####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 111 ( 444), selected 93 , name T0630TS328_1-D1 # Molecule2: number of CA atoms 99 ( 813), selected 93 , name T0630-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0630TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 13 - 38 3.86 32.24 LCS_AVERAGE: 23.80 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 13 - 26 1.75 34.03 LCS_AVERAGE: 8.69 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 88 - 96 0.84 29.73 LCS_AVERAGE: 5.26 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 93 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 13 L 13 3 14 26 3 5 8 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT I 14 I 14 6 14 26 3 5 8 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT E 15 E 15 6 14 26 3 5 8 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT I 16 I 16 6 14 26 3 5 8 11 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT F 17 F 17 6 14 26 3 5 8 11 13 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT R 18 R 18 7 14 26 1 5 8 11 13 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT P 19 P 19 7 14 26 1 4 8 11 13 17 19 20 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT F 20 F 20 7 14 26 3 5 7 11 13 14 19 21 22 22 22 24 25 25 26 26 26 26 26 26 LCS_GDT Y 21 Y 21 7 14 26 3 5 8 11 13 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT R 22 R 22 7 14 26 3 5 8 11 13 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT H 23 H 23 7 14 26 3 5 8 11 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT W 24 W 24 7 14 26 3 5 8 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT A 25 A 25 6 14 26 3 5 8 14 14 16 18 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT I 26 I 26 5 14 26 3 5 7 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT Y 27 Y 27 5 13 26 3 5 8 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT V 28 V 28 5 13 26 3 5 8 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT G 29 G 29 5 13 26 3 5 7 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT D 30 D 30 3 13 26 3 3 7 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT G 31 G 31 5 13 26 3 5 6 8 14 16 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT Y 32 Y 32 5 13 26 4 5 7 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT V 33 V 33 5 13 26 4 5 8 14 14 17 19 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT V 34 V 34 5 13 26 4 5 5 7 8 14 16 18 18 21 23 24 25 25 26 26 26 26 26 26 LCS_GDT H 35 H 35 5 13 26 4 5 8 14 14 16 18 21 22 22 23 24 25 25 26 26 26 26 26 26 LCS_GDT L 36 L 36 5 13 26 4 4 7 14 14 16 17 18 20 21 23 24 25 25 26 26 26 26 26 26 LCS_GDT A 37 A 37 5 9 26 4 4 5 7 8 12 16 18 18 21 22 24 25 25 26 26 26 26 26 26 LCS_GDT P 38 P 38 5 9 26 4 4 5 6 8 9 9 9 15 19 20 21 23 24 26 26 26 26 26 26 LCS_GDT K 57 K 57 3 4 23 3 3 4 4 5 6 8 9 11 12 16 22 25 31 36 39 43 44 49 49 LCS_GDT A 58 A 58 3 6 23 3 3 4 4 7 7 9 12 15 19 21 25 29 31 36 39 43 44 49 49 LCS_GDT I 59 I 59 5 6 23 3 4 5 5 6 8 11 14 18 20 22 26 30 31 36 39 42 44 49 49 LCS_GDT V 60 V 60 5 6 23 3 4 5 6 6 7 11 12 15 20 22 26 30 32 36 39 43 44 49 49 LCS_GDT K 61 K 61 5 6 23 3 4 5 7 9 10 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT K 62 K 62 5 6 23 3 4 5 7 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT E 63 E 63 5 8 23 3 3 5 6 8 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT L 64 L 64 7 8 23 7 7 7 7 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT L 65 L 65 7 8 23 7 7 7 7 7 11 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT Y 66 Y 66 7 8 23 7 7 7 7 7 10 14 16 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT D 67 D 67 7 8 23 7 7 7 7 8 10 14 16 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT V 68 V 68 7 8 23 7 7 7 7 7 10 14 16 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT A 69 A 69 7 8 23 7 7 7 7 9 10 14 16 19 22 23 29 31 33 36 39 43 44 49 49 LCS_GDT G 70 G 70 7 8 23 7 7 7 7 9 9 12 15 18 20 22 26 30 31 36 39 43 44 49 49 LCS_GDT S 71 S 71 5 8 23 4 4 6 6 9 10 14 16 18 20 23 26 31 33 36 39 43 44 49 49 LCS_GDT D 72 D 72 5 7 23 4 4 6 6 9 10 14 16 19 22 23 26 31 33 36 39 43 44 49 49 LCS_GDT K 73 K 73 5 7 23 4 4 6 6 8 10 14 16 19 22 23 26 31 33 36 39 43 44 49 49 LCS_GDT Y 74 Y 74 5 7 23 4 4 6 6 8 10 14 16 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT Q 75 Q 75 5 7 23 3 4 5 6 7 9 12 16 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT V 76 V 76 5 7 23 3 4 5 6 7 8 9 15 17 22 24 25 29 32 34 39 43 44 49 49 LCS_GDT N 77 N 77 5 7 23 3 4 5 6 7 9 11 15 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT N 78 N 78 4 7 23 3 3 3 5 6 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT K 79 K 79 4 7 23 3 4 5 6 7 8 10 15 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT H 80 H 80 3 5 23 3 3 3 4 5 6 8 9 12 14 15 20 25 29 33 37 40 42 45 49 LCS_GDT D 81 D 81 3 5 23 3 3 3 4 7 8 8 10 12 14 16 20 23 25 30 32 33 36 40 45 LCS_GDT D 82 D 82 4 6 19 3 3 4 5 7 8 8 10 12 14 15 16 18 20 23 27 32 35 36 40 LCS_GDT K 83 K 83 4 6 19 3 3 4 5 6 6 6 7 7 9 12 13 16 17 19 22 24 26 27 31 LCS_GDT Y 84 Y 84 4 6 19 3 3 4 5 6 6 6 7 8 12 13 15 18 20 22 23 27 31 35 41 LCS_GDT S 85 S 85 4 6 19 3 4 4 5 6 7 10 11 12 14 15 16 18 20 23 27 33 35 37 41 LCS_GDT P 86 P 86 4 9 19 3 4 5 8 9 10 11 12 14 16 16 17 18 21 25 31 33 35 37 41 LCS_GDT L 87 L 87 4 9 19 3 4 4 5 6 7 9 10 13 16 16 17 18 22 25 31 33 35 37 41 LCS_GDT P 88 P 88 9 10 19 4 8 9 9 9 10 11 12 14 16 16 18 18 22 25 31 33 35 37 41 LCS_GDT C 89 C 89 9 10 19 6 8 9 9 9 10 11 12 14 16 18 24 27 28 31 36 38 41 45 47 LCS_GDT S 90 S 90 9 10 19 6 8 9 9 9 10 11 15 18 22 24 26 29 32 36 38 41 42 45 49 LCS_GDT K 91 K 91 9 10 19 6 8 9 9 9 10 11 12 14 17 21 23 29 30 32 35 38 42 45 47 LCS_GDT I 92 I 92 9 10 19 6 8 9 9 9 10 11 15 17 22 24 25 29 32 36 38 41 42 45 49 LCS_GDT I 93 I 93 9 10 18 6 8 9 9 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT Q 94 Q 94 9 10 18 6 8 9 9 9 10 12 17 18 19 21 24 28 32 34 39 42 44 49 49 LCS_GDT R 95 R 95 9 10 18 4 8 9 9 9 10 11 12 14 16 16 19 22 26 27 31 36 37 41 45 LCS_GDT A 96 A 96 9 10 22 4 5 9 9 9 10 10 12 14 16 18 22 24 28 33 39 42 44 49 49 LCS_GDT E 97 E 97 4 10 25 4 4 5 6 7 9 12 15 17 18 21 24 28 31 36 39 43 44 49 49 LCS_GDT E 98 E 98 4 5 25 4 4 5 5 7 9 10 11 13 16 19 22 25 27 30 33 39 41 44 47 LCS_GDT L 99 L 99 4 5 25 3 3 4 5 7 7 9 12 15 16 19 22 25 28 34 37 40 44 49 49 LCS_GDT V 100 V 100 4 6 25 3 3 5 6 9 9 10 13 15 16 21 23 26 29 34 39 40 44 49 49 LCS_GDT G 101 G 101 4 6 25 3 4 4 6 9 9 10 13 15 16 21 23 26 29 34 39 40 44 49 49 LCS_GDT Q 102 Q 102 4 6 25 3 4 4 6 9 9 12 13 15 18 21 24 28 32 36 39 43 44 49 49 LCS_GDT E 103 E 103 4 6 25 3 4 4 5 9 9 12 13 17 18 21 24 28 32 36 39 43 44 49 49 LCS_GDT V 104 V 104 4 6 25 3 4 5 6 6 9 15 17 19 22 27 28 31 33 36 39 43 44 49 49 LCS_GDT L 105 L 105 3 6 25 3 3 4 6 9 10 13 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT Y 106 Y 106 3 6 25 1 3 4 5 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT K 107 K 107 4 6 25 1 4 4 5 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT L 108 L 108 4 6 25 3 4 4 7 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT T 109 T 109 4 6 25 3 4 4 7 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT S 110 S 110 4 6 25 3 4 4 7 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT E 111 E 111 4 5 25 3 3 4 6 6 8 13 16 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT N 112 N 112 4 5 25 3 3 4 6 8 10 14 16 19 22 24 29 31 33 36 39 43 44 49 49 LCS_GDT C 113 C 113 3 4 25 3 3 7 7 9 11 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT E 114 E 114 3 4 25 3 3 7 7 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT H 115 H 115 3 4 25 3 4 7 7 9 12 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT F 116 F 116 3 6 25 3 4 7 7 9 11 15 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT V 117 V 117 5 6 25 3 4 5 6 6 6 7 9 11 12 16 19 22 26 29 33 38 42 45 47 LCS_GDT N 118 N 118 5 6 25 3 4 5 6 6 8 9 9 12 15 18 22 26 29 33 38 41 44 46 49 LCS_GDT E 119 E 119 5 6 25 3 4 7 7 7 11 13 17 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT L 120 L 120 5 6 25 3 4 5 6 8 10 14 16 19 22 27 29 31 33 36 39 43 44 49 49 LCS_GDT R 121 R 121 5 6 25 1 3 5 6 8 10 14 16 18 20 22 26 30 33 36 39 43 44 49 49 LCS_GDT Y 122 Y 122 3 4 21 0 3 4 4 4 5 5 15 17 20 22 26 30 31 36 39 43 44 49 49 LCS_GDT G 123 G 123 3 4 9 0 3 4 4 4 4 5 8 9 10 11 11 18 24 28 30 37 39 44 46 LCS_AVERAGE LCS_A: 12.58 ( 5.26 8.69 23.80 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 9 14 14 17 19 21 22 22 27 29 31 33 36 39 43 44 49 49 GDT PERCENT_AT 7.07 8.08 9.09 14.14 14.14 17.17 19.19 21.21 22.22 22.22 27.27 29.29 31.31 33.33 36.36 39.39 43.43 44.44 49.49 49.49 GDT RMS_LOCAL 0.31 0.57 0.84 1.52 1.52 2.25 2.44 2.78 2.81 2.81 4.16 4.50 4.71 4.96 5.32 5.55 5.93 6.01 6.56 6.56 GDT RMS_ALL_AT 26.59 28.79 29.73 33.97 33.97 32.82 32.38 32.78 32.59 32.59 22.10 22.19 22.20 22.26 22.39 22.16 22.32 22.40 22.34 22.34 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 13 L 13 1.119 4 0.024 0.024 1.340 81.429 40.714 LGA I 14 I 14 2.717 4 0.615 0.615 5.905 48.690 24.345 LGA E 15 E 15 2.892 5 0.221 0.221 2.892 62.857 27.937 LGA I 16 I 16 2.776 4 0.132 0.132 3.966 50.119 25.060 LGA F 17 F 17 2.667 7 0.339 0.339 2.667 59.048 21.472 LGA R 18 R 18 2.487 7 0.016 0.016 3.254 57.262 20.823 LGA P 19 P 19 3.582 3 0.064 0.064 3.582 55.833 31.905 LGA F 20 F 20 4.887 7 0.280 0.280 5.424 31.548 11.472 LGA Y 21 Y 21 3.346 8 0.094 0.094 3.607 59.881 19.960 LGA R 22 R 22 1.431 7 0.036 0.036 2.394 73.095 26.580 LGA H 23 H 23 2.230 6 0.181 0.181 2.230 72.976 29.190 LGA W 24 W 24 2.029 10 0.205 0.205 2.781 60.952 17.415 LGA A 25 A 25 4.024 1 0.165 0.165 4.024 46.786 37.429 LGA I 26 I 26 2.701 4 0.062 0.062 3.310 55.476 27.738 LGA Y 27 Y 27 1.012 8 0.106 0.106 1.389 85.952 28.651 LGA V 28 V 28 0.493 3 0.602 0.602 1.926 86.190 49.252 LGA G 29 G 29 3.014 0 0.321 0.321 3.533 53.810 53.810 LGA D 30 D 30 2.190 4 0.139 0.139 2.619 64.881 32.440 LGA G 31 G 31 3.782 0 0.696 0.696 4.033 48.810 48.810 LGA Y 32 Y 32 2.175 8 0.073 0.073 4.294 62.024 20.675 LGA V 33 V 33 2.292 3 0.120 0.120 4.664 53.095 30.340 LGA V 34 V 34 6.717 3 0.148 0.148 6.717 20.595 11.769 LGA H 35 H 35 3.914 6 0.216 0.216 7.597 24.524 9.810 LGA L 36 L 36 6.430 4 0.064 0.064 6.430 28.214 14.107 LGA A 37 A 37 7.872 1 0.078 0.078 10.466 4.643 3.714 LGA P 38 P 38 10.977 3 0.433 0.433 14.835 0.119 0.068 LGA K 57 K 57 49.785 5 0.182 0.182 51.412 0.000 0.000 LGA A 58 A 58 45.468 1 0.084 0.084 47.037 0.000 0.000 LGA I 59 I 59 40.486 4 0.600 0.600 42.343 0.000 0.000 LGA V 60 V 60 36.103 3 0.274 0.274 37.799 0.000 0.000 LGA K 61 K 61 35.104 5 0.062 0.062 35.104 0.000 0.000 LGA K 62 K 62 33.705 5 0.590 0.590 34.707 0.000 0.000 LGA E 63 E 63 31.714 5 0.650 0.650 31.939 0.000 0.000 LGA L 64 L 64 31.453 4 0.616 0.616 32.953 0.000 0.000 LGA L 65 L 65 33.485 4 0.057 0.057 35.750 0.000 0.000 LGA Y 66 Y 66 36.535 8 0.023 0.023 37.651 0.000 0.000 LGA D 67 D 67 35.290 4 0.105 0.105 36.647 0.000 0.000 LGA V 68 V 68 35.351 3 0.067 0.067 37.850 0.000 0.000 LGA A 69 A 69 38.618 1 0.060 0.060 41.248 0.000 0.000 LGA G 70 G 70 40.858 0 0.468 0.468 40.858 0.000 0.000 LGA S 71 S 71 39.981 2 0.301 0.301 41.025 0.000 0.000 LGA D 72 D 72 39.678 4 0.137 0.137 40.009 0.000 0.000 LGA K 73 K 73 41.430 5 0.330 0.330 41.855 0.000 0.000 LGA Y 74 Y 74 38.170 8 0.129 0.129 39.040 0.000 0.000 LGA Q 75 Q 75 36.412 5 0.075 0.075 37.259 0.000 0.000 LGA V 76 V 76 30.953 3 0.662 0.662 32.727 0.000 0.000 LGA N 77 N 77 34.020 4 0.341 0.341 34.257 0.000 0.000 LGA N 78 N 78 34.192 4 0.540 0.540 34.420 0.000 0.000 LGA K 79 K 79 36.455 5 0.725 0.725 36.455 0.000 0.000 LGA H 80 H 80 30.553 6 0.537 0.537 32.645 0.000 0.000 LGA D 81 D 81 27.602 4 0.633 0.633 28.789 0.000 0.000 LGA D 82 D 82 24.953 4 0.414 0.414 26.563 0.000 0.000 LGA K 83 K 83 21.936 5 0.044 0.044 23.611 0.000 0.000 LGA Y 84 Y 84 21.134 8 0.626 0.626 21.840 0.000 0.000 LGA S 85 S 85 19.731 2 0.066 0.066 20.032 0.000 0.000 LGA P 86 P 86 21.467 3 0.056 0.056 21.852 0.000 0.000 LGA L 87 L 87 23.756 4 0.699 0.699 24.188 0.000 0.000 LGA P 88 P 88 22.111 3 0.520 0.520 23.046 0.000 0.000 LGA C 89 C 89 25.678 2 0.075 0.075 27.458 0.000 0.000 LGA S 90 S 90 28.536 2 0.055 0.055 28.536 0.000 0.000 LGA K 91 K 91 23.811 5 0.045 0.045 25.150 0.000 0.000 LGA I 92 I 92 24.505 4 0.066 0.066 27.519 0.000 0.000 LGA I 93 I 93 31.059 4 0.034 0.034 32.787 0.000 0.000 LGA Q 94 Q 94 30.290 5 0.094 0.094 30.524 0.000 0.000 LGA R 95 R 95 26.918 7 0.235 0.235 29.762 0.000 0.000 LGA A 96 A 96 33.048 1 0.558 0.558 34.623 0.000 0.000 LGA E 97 E 97 36.243 5 0.063 0.063 38.818 0.000 0.000 LGA E 98 E 98 38.842 5 0.376 0.376 42.292 0.000 0.000 LGA L 99 L 99 43.077 4 0.714 0.714 44.379 0.000 0.000 LGA V 100 V 100 46.995 3 0.263 0.263 47.606 0.000 0.000 LGA G 101 G 101 49.972 0 0.570 0.570 53.049 0.000 0.000 LGA Q 102 Q 102 50.053 5 0.181 0.181 50.053 0.000 0.000 LGA E 103 E 103 50.595 5 0.648 0.648 51.166 0.000 0.000 LGA V 104 V 104 48.882 3 0.351 0.351 52.088 0.000 0.000 LGA L 105 L 105 49.040 4 0.629 0.629 50.025 0.000 0.000 LGA Y 106 Y 106 51.762 8 0.536 0.536 52.226 0.000 0.000 LGA K 107 K 107 53.726 5 0.446 0.446 53.726 0.000 0.000 LGA L 108 L 108 52.566 4 0.206 0.206 54.429 0.000 0.000 LGA T 109 T 109 51.693 3 0.066 0.066 51.693 0.000 0.000 LGA S 110 S 110 50.249 2 0.594 0.594 51.270 0.000 0.000 LGA E 111 E 111 48.422 5 0.338 0.338 49.277 0.000 0.000 LGA N 112 N 112 45.250 4 0.752 0.752 46.630 0.000 0.000 LGA C 113 C 113 44.428 2 0.576 0.576 44.497 0.000 0.000 LGA E 114 E 114 44.646 5 0.113 0.113 44.900 0.000 0.000 LGA H 115 H 115 44.738 6 0.597 0.597 44.854 0.000 0.000 LGA F 116 F 116 43.465 7 0.584 0.584 44.053 0.000 0.000 LGA V 117 V 117 44.540 3 0.435 0.435 44.540 0.000 0.000 LGA N 118 N 118 44.106 4 0.205 0.205 44.598 0.000 0.000 LGA E 119 E 119 41.894 5 0.042 0.042 42.830 0.000 0.000 LGA L 120 L 120 39.206 4 0.607 0.607 40.455 0.000 0.000 LGA R 121 R 121 37.551 7 0.844 0.844 38.323 0.000 0.000 LGA Y 122 Y 122 32.583 8 0.701 0.701 34.746 0.000 0.000 LGA G 123 G 123 31.960 0 0.103 0.103 32.190 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 93 372 372 100.00 769 372 48.37 99 SUMMARY(RMSD_GDC): 18.371 18.285 18.285 13.624 6.722 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 111 99 4.0 21 2.78 20.707 17.333 0.729 LGA_LOCAL RMSD: 2.781 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 32.778 Number of assigned atoms: 93 Std_ASGN_ATOMS RMSD: 18.371 Standard rmsd on all 93 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.674418 * X + 0.493602 * Y + -0.549105 * Z + -102.721039 Y_new = -0.004202 * X + 0.746247 * Y + 0.665656 * Z + -43.649654 Z_new = 0.738337 * X + -0.446623 * Y + 0.505357 * Z + -46.823978 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.006231 -0.830602 -0.723780 [DEG: -0.3570 -47.5900 -41.4695 ] ZXZ: -2.451847 1.041001 2.114814 [DEG: -140.4805 59.6450 121.1699 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0630TS328_1-D1 REMARK 2: T0630-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0630TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 111 99 4.0 21 2.78 17.333 18.37 REMARK ---------------------------------------------------------- MOLECULE T0630TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0630 REMARK MODEL 1 REMARK PARENT 1y56_A ATOM 1 N LEU 13 -9.469 35.213 11.528 1.00 3.00 N ATOM 2 CA LEU 13 -8.318 35.016 12.407 1.00 3.00 C ATOM 3 C LEU 13 -8.397 33.650 13.077 1.00 3.00 C ATOM 4 O LEU 13 -9.453 33.249 13.580 1.00 3.00 O ATOM 5 N ILE 14 -7.276 32.938 13.084 1.00 3.00 N ATOM 6 CA ILE 14 -7.253 31.577 13.595 1.00 3.00 C ATOM 7 C ILE 14 -6.851 31.495 15.072 1.00 3.00 C ATOM 8 O ILE 14 -6.890 30.429 15.683 1.00 3.00 O ATOM 9 N GLU 15 -6.487 32.630 15.652 1.00 3.00 N ATOM 10 CA GLU 15 -6.136 32.658 17.051 1.00 3.00 C ATOM 11 C GLU 15 -4.641 32.527 16.790 1.00 3.00 C ATOM 12 O GLU 15 -4.224 31.901 15.817 1.00 3.00 O ATOM 13 N ILE 16 -3.856 33.176 17.645 1.00 3.00 N ATOM 14 CA ILE 16 -2.405 33.166 17.532 1.00 3.00 C ATOM 15 C ILE 16 -1.793 33.841 18.753 1.00 3.00 C ATOM 16 O ILE 16 -2.450 34.639 19.430 1.00 3.00 O ATOM 17 N PHE 17 -0.553 33.480 19.062 1.00 3.00 N ATOM 18 CA PHE 17 0.153 34.076 20.182 1.00 3.00 C ATOM 19 C PHE 17 1.641 33.968 19.897 1.00 3.00 C ATOM 20 O PHE 17 2.083 33.033 19.229 1.00 3.00 O ATOM 21 N ARG 18 2.397 34.984 20.322 1.00 3.00 N ATOM 22 CA ARG 18 3.832 35.022 20.104 1.00 3.00 C ATOM 23 C ARG 18 4.510 36.016 21.040 1.00 3.00 C ATOM 24 O ARG 18 3.837 36.832 21.682 1.00 3.00 O ATOM 25 N PRO 19 5.822 35.925 21.148 1.00 3.00 N ATOM 26 CA PRO 19 6.593 36.787 22.034 1.00 3.00 C ATOM 27 C PRO 19 7.633 37.587 21.258 1.00 3.00 C ATOM 28 O PRO 19 8.231 37.083 20.305 1.00 3.00 O ATOM 29 N PHE 20 7.847 38.833 21.672 1.00 3.00 N ATOM 30 CA PHE 20 8.849 39.693 21.043 1.00 3.00 C ATOM 31 C PHE 20 7.770 40.279 20.141 1.00 3.00 C ATOM 32 O PHE 20 7.867 41.434 19.742 1.00 3.00 O ATOM 33 N TYR 21 6.770 39.466 19.802 1.00 3.00 N ATOM 34 CA TYR 21 5.594 39.890 19.032 1.00 3.00 C ATOM 35 C TYR 21 4.476 38.836 19.175 1.00 3.00 C ATOM 36 O TYR 21 4.699 37.757 19.731 1.00 3.00 O ATOM 37 N ARG 22 3.282 39.147 18.677 1.00 3.00 N ATOM 38 CA ARG 22 2.219 38.159 18.590 1.00 3.00 C ATOM 39 C ARG 22 1.995 37.761 17.151 1.00 3.00 C ATOM 40 O ARG 22 2.010 38.602 16.240 1.00 3.00 O ATOM 41 N HIS 23 1.782 36.469 16.953 1.00 3.00 N ATOM 42 CA HIS 23 1.375 35.960 15.662 1.00 3.00 C ATOM 43 C HIS 23 -0.154 35.774 15.559 1.00 3.00 C ATOM 44 O HIS 23 -0.756 35.001 16.305 1.00 3.00 O ATOM 45 N TRP 24 -0.781 36.503 14.649 1.00 3.00 N ATOM 46 CA TRP 24 -2.186 36.299 14.378 1.00 3.00 C ATOM 47 C TRP 24 -2.284 35.792 12.961 1.00 3.00 C ATOM 48 O TRP 24 -2.305 36.588 12.020 1.00 3.00 O ATOM 49 N ALA 25 -2.313 34.464 12.793 1.00 3.00 N ATOM 50 CA ALA 25 -2.536 33.909 11.464 1.00 3.00 C ATOM 51 C ALA 25 -3.969 34.142 11.014 1.00 3.00 C ATOM 52 O ALA 25 -4.910 34.022 11.790 1.00 3.00 O ATOM 53 N ILE 26 -4.124 34.469 9.748 1.00 3.00 N ATOM 54 CA ILE 26 -5.389 34.935 9.236 1.00 3.00 C ATOM 55 C ILE 26 -5.647 34.264 7.890 1.00 3.00 C ATOM 56 O ILE 26 -4.710 34.038 7.123 1.00 3.00 O ATOM 57 N TYR 27 -6.904 33.910 7.618 1.00 3.00 N ATOM 58 CA TYR 27 -7.268 33.306 6.322 1.00 3.00 C ATOM 59 C TYR 27 -8.226 34.190 5.526 1.00 3.00 C ATOM 60 O TYR 27 -9.292 34.556 6.017 1.00 3.00 O ATOM 61 N VAL 28 -7.845 34.532 4.301 1.00 3.00 N ATOM 62 CA VAL 28 -8.725 35.305 3.430 1.00 3.00 C ATOM 63 C VAL 28 -8.788 34.657 2.058 1.00 3.00 C ATOM 64 O VAL 28 -7.760 34.360 1.461 1.00 3.00 O ATOM 65 N GLY 29 -9.998 34.451 1.554 1.00 3.00 N ATOM 66 CA GLY 29 -10.190 33.646 0.346 1.00 3.00 C ATOM 67 C GLY 29 -9.683 32.261 0.663 1.00 3.00 C ATOM 68 O GLY 29 -10.299 31.526 1.435 1.00 3.00 O ATOM 69 N ASP 30 -8.533 31.913 0.104 1.00 3.00 N ATOM 70 CA ASP 30 -7.854 30.695 0.534 1.00 3.00 C ATOM 71 C ASP 30 -6.345 30.895 0.777 1.00 3.00 C ATOM 72 O ASP 30 -5.613 29.925 0.963 1.00 3.00 O ATOM 73 N GLY 31 -5.884 32.145 0.756 1.00 3.00 N ATOM 74 CA GLY 31 -4.516 32.462 1.119 1.00 3.00 C ATOM 75 C GLY 31 -4.414 32.524 2.632 1.00 3.00 C ATOM 76 O GLY 31 -5.311 33.020 3.296 1.00 3.00 O ATOM 77 N TYR 32 -3.326 32.007 3.178 1.00 3.00 N ATOM 78 CA TYR 32 -3.020 32.225 4.579 1.00 3.00 C ATOM 79 C TYR 32 -2.166 33.483 4.687 1.00 3.00 C ATOM 80 O TYR 32 -1.233 33.644 3.914 1.00 3.00 O ATOM 81 N VAL 33 -2.492 34.376 5.620 1.00 3.00 N ATOM 82 CA VAL 33 -1.675 35.559 5.887 1.00 3.00 C ATOM 83 C VAL 33 -1.265 35.528 7.347 1.00 3.00 C ATOM 84 O VAL 33 -2.100 35.300 8.231 1.00 3.00 O ATOM 85 N VAL 34 0.022 35.756 7.598 1.00 3.00 N ATOM 86 CA VAL 34 0.545 35.828 8.959 1.00 3.00 C ATOM 87 C VAL 34 0.763 37.268 9.381 1.00 3.00 C ATOM 88 O VAL 34 1.579 37.988 8.794 1.00 3.00 O ATOM 89 N HIS 35 0.041 37.691 10.405 1.00 3.00 N ATOM 90 CA HIS 35 0.210 39.043 10.887 1.00 3.00 C ATOM 91 C HIS 35 1.018 39.021 12.173 1.00 3.00 C ATOM 92 O HIS 35 0.617 38.407 13.167 1.00 3.00 O ATOM 93 N LEU 36 2.177 39.671 12.126 1.00 3.00 N ATOM 94 CA LEU 36 3.055 39.791 13.277 1.00 3.00 C ATOM 95 C LEU 36 2.817 41.182 13.823 1.00 3.00 C ATOM 96 O LEU 36 3.042 42.166 13.127 1.00 3.00 O ATOM 97 N ALA 37 2.334 41.265 15.058 1.00 3.00 N ATOM 98 CA ALA 37 2.037 42.557 15.668 1.00 3.00 C ATOM 99 C ALA 37 2.603 42.683 17.082 1.00 3.00 C ATOM 100 O ALA 37 2.752 41.680 17.784 1.00 3.00 O ATOM 101 N PRO 38 2.917 43.915 17.485 1.00 3.00 N ATOM 102 CA PRO 38 3.425 44.196 18.831 1.00 3.00 C ATOM 103 C PRO 38 2.347 43.534 19.667 1.00 3.00 C ATOM 104 O PRO 38 2.298 42.292 19.752 1.00 3.00 O ATOM 105 N PRO 39 1.482 44.322 20.284 1.00 3.00 N ATOM 106 CA PRO 39 0.423 43.766 21.096 1.00 3.00 C ATOM 107 C PRO 39 -0.925 44.398 20.802 1.00 3.00 C ATOM 108 O PRO 39 -1.026 45.584 20.486 1.00 3.00 O ATOM 109 N SER 40 -1.968 43.593 20.912 1.00 3.00 N ATOM 110 CA SER 40 -3.332 44.066 20.706 1.00 3.00 C ATOM 111 C SER 40 -4.095 43.846 22.013 1.00 3.00 C ATOM 112 O SER 40 -4.662 42.778 22.246 1.00 3.00 O ATOM 113 N GLU 41 -4.068 44.847 22.885 1.00 9.00 N ATOM 114 CA GLU 41 -4.768 44.718 24.144 1.00 9.00 C ATOM 115 C GLU 41 -6.170 45.202 23.896 1.00 9.00 C ATOM 116 O GLU 41 -6.664 46.181 24.479 1.00 9.00 O ATOM 117 N VAL 42 -6.800 44.478 22.977 1.00 3.00 N ATOM 118 CA VAL 42 -8.138 44.780 22.559 1.00 3.00 C ATOM 119 C VAL 42 -8.403 44.467 21.099 1.00 3.00 C ATOM 120 O VAL 42 -8.361 45.354 20.251 1.00 3.00 O ATOM 121 N ALA 43 -8.621 43.194 20.780 1.00 3.00 N ATOM 122 CA ALA 43 -8.988 42.836 19.421 1.00 3.00 C ATOM 123 C ALA 43 -10.474 42.567 19.627 1.00 3.00 C ATOM 124 O ALA 43 -10.867 41.505 20.121 1.00 3.00 O ATOM 125 N GLY 44 -11.285 43.563 19.275 1.00 3.00 N ATOM 126 CA GLY 44 -12.729 43.475 19.436 1.00 3.00 C ATOM 127 C GLY 44 -13.732 42.542 18.785 1.00 3.00 C ATOM 128 O GLY 44 -14.236 42.766 17.674 1.00 3.00 O ATOM 129 N ALA 45 -14.023 41.485 19.527 1.00 3.00 N ATOM 130 CA ALA 45 -14.359 40.208 18.941 1.00 3.00 C ATOM 131 C ALA 45 -15.864 39.985 18.903 1.00 3.00 C ATOM 132 O ALA 45 -16.363 39.204 18.103 1.00 3.00 O ATOM 133 N GLY 46 -16.577 40.699 19.769 1.00 3.00 N ATOM 134 CA GLY 46 -18.028 40.707 19.764 1.00 3.00 C ATOM 135 C GLY 46 -18.698 39.721 20.691 1.00 3.00 C ATOM 136 O GLY 46 -18.045 38.880 21.334 1.00 3.00 O ATOM 137 N ALA 47 -20.020 39.862 20.755 1.00 3.00 N ATOM 138 CA ALA 47 -20.907 38.935 21.432 1.00 3.00 C ATOM 139 C ALA 47 -21.630 38.119 20.380 1.00 3.00 C ATOM 140 O ALA 47 -21.743 38.534 19.227 1.00 3.00 O ATOM 141 N ALA 48 -22.131 36.959 20.766 1.00 3.00 N ATOM 142 CA ALA 48 -22.953 36.180 19.857 1.00 3.00 C ATOM 143 C ALA 48 -24.360 36.018 20.448 1.00 3.00 C ATOM 144 O ALA 48 -24.523 36.073 21.669 1.00 3.00 O ATOM 145 N SER 49 -25.365 35.863 19.579 1.00 3.00 N ATOM 146 CA SER 49 -26.756 35.686 19.998 1.00 3.00 C ATOM 147 C SER 49 -26.921 34.361 20.706 1.00 3.00 C ATOM 148 O SER 49 -26.401 33.340 20.255 1.00 3.00 O ATOM 149 N VAL 50 -27.640 34.385 21.823 1.00 3.00 N ATOM 150 CA VAL 50 -27.897 33.181 22.607 1.00 3.00 C ATOM 151 C VAL 50 -28.849 32.276 21.855 1.00 3.00 C ATOM 152 O VAL 50 -29.710 32.755 21.123 1.00 3.00 O ATOM 153 N MET 51 -28.710 30.969 22.020 1.00 3.00 N ATOM 154 CA MET 51 -29.679 30.101 21.377 1.00 3.00 C ATOM 155 C MET 51 -30.762 29.600 22.351 1.00 3.00 C ATOM 156 O MET 51 -30.457 29.089 23.433 1.00 3.00 O ATOM 157 N SER 52 -32.022 29.800 21.945 1.00 3.00 N ATOM 158 CA SER 52 -33.207 29.378 22.702 1.00 3.00 C ATOM 159 C SER 52 -33.476 27.909 22.523 1.00 3.00 C ATOM 160 O SER 52 -33.366 27.363 21.421 1.00 3.00 O ATOM 161 N ALA 53 -33.835 27.280 23.629 1.00 3.00 N ATOM 162 CA ALA 53 -34.158 25.884 23.647 1.00 3.00 C ATOM 163 C ALA 53 -35.674 25.721 23.579 1.00 3.00 C ATOM 164 O ALA 53 -36.394 26.044 24.529 1.00 3.00 O ATOM 165 N LEU 54 -36.165 25.266 22.432 1.00 3.00 N ATOM 166 CA LEU 54 -37.571 24.848 22.279 1.00 3.00 C ATOM 167 C LEU 54 -37.562 23.694 21.300 1.00 3.00 C ATOM 168 O LEU 54 -36.500 23.377 20.782 1.00 3.00 O ATOM 169 N THR 55 -38.709 23.079 21.025 1.00 3.00 N ATOM 170 CA THR 55 -38.692 21.828 20.259 1.00 3.00 C ATOM 171 C THR 55 -37.889 22.323 19.060 1.00 3.00 C ATOM 172 O THR 55 -36.740 21.913 18.849 1.00 3.00 O ATOM 173 N ASP 56 -38.488 23.193 18.257 1.00 3.00 N ATOM 174 CA ASP 56 -37.799 23.667 17.072 1.00 3.00 C ATOM 175 C ASP 56 -38.460 24.893 16.518 1.00 3.00 C ATOM 176 O ASP 56 -39.557 25.277 16.939 1.00 3.00 O ATOM 177 N LYS 57 -37.779 25.490 15.535 1.00 3.00 N ATOM 178 CA LYS 57 -38.242 26.675 14.835 1.00 3.00 C ATOM 179 C LYS 57 -37.407 26.871 13.567 1.00 3.00 C ATOM 180 O LYS 57 -36.343 26.277 13.431 1.00 3.00 O ATOM 181 N ALA 58 -37.913 27.697 12.662 1.00 3.00 N ATOM 182 CA ALA 58 -37.162 28.067 11.470 1.00 3.00 C ATOM 183 C ALA 58 -35.868 28.670 12.095 1.00 3.00 C ATOM 184 O ALA 58 -35.953 29.399 13.118 1.00 3.00 O ATOM 185 N ILE 59 -34.697 28.345 11.531 1.00 3.00 N ATOM 186 CA ILE 59 -33.400 28.777 12.082 1.00 3.00 C ATOM 187 C ILE 59 -33.333 30.228 12.574 1.00 3.00 C ATOM 188 O ILE 59 -32.735 30.486 13.605 1.00 3.00 O ATOM 189 N VAL 60 -33.949 31.146 11.853 1.00 3.00 N ATOM 190 CA VAL 60 -33.891 32.550 12.271 1.00 3.00 C ATOM 191 C VAL 60 -33.450 33.027 13.637 1.00 3.00 C ATOM 192 O VAL 60 -34.280 33.451 14.445 1.00 3.00 O ATOM 193 N LYS 61 -32.151 32.949 13.897 1.00 3.00 N ATOM 194 CA LYS 61 -31.544 33.607 15.036 1.00 3.00 C ATOM 195 C LYS 61 -31.555 35.112 14.761 1.00 3.00 C ATOM 196 O LYS 61 -31.513 35.532 13.597 1.00 3.00 O ATOM 197 N LYS 62 -31.606 35.924 15.817 1.00 3.00 N ATOM 198 CA LYS 62 -31.753 37.379 15.666 1.00 3.00 C ATOM 199 C LYS 62 -30.875 37.958 14.570 1.00 3.00 C ATOM 200 O LYS 62 -31.375 38.556 13.634 1.00 3.00 O ATOM 201 N GLU 63 -29.563 37.777 14.701 1.00 3.00 N ATOM 202 CA GLU 63 -28.576 38.299 13.738 1.00 3.00 C ATOM 203 C GLU 63 -28.819 37.923 12.266 1.00 3.00 C ATOM 204 O GLU 63 -28.534 38.724 11.370 1.00 3.00 O ATOM 205 N LEU 64 -29.340 36.724 12.019 1.00 3.00 N ATOM 206 CA LEU 64 -29.532 36.276 10.653 1.00 3.00 C ATOM 207 C LEU 64 -30.759 36.928 10.044 1.00 3.00 C ATOM 208 O LEU 64 -30.760 37.290 8.861 1.00 3.00 O ATOM 209 N LEU 65 -31.793 37.084 10.865 1.00 3.00 N ATOM 210 CA LEU 65 -33.015 37.744 10.445 1.00 3.00 C ATOM 211 C LEU 65 -32.731 39.197 10.087 1.00 3.00 C ATOM 212 O LEU 65 -33.172 39.681 9.048 1.00 3.00 O ATOM 213 N TYR 66 -31.983 39.888 10.937 1.00 3.00 N ATOM 214 CA TYR 66 -31.588 41.261 10.657 1.00 3.00 C ATOM 215 C TYR 66 -30.693 41.337 9.424 1.00 3.00 C ATOM 216 O TYR 66 -30.832 42.240 8.604 1.00 3.00 O ATOM 217 N ASP 67 -29.792 40.375 9.271 1.00 3.00 N ATOM 218 CA ASP 67 -28.916 40.398 8.111 1.00 3.00 C ATOM 219 C ASP 67 -29.710 40.345 6.816 1.00 3.00 C ATOM 220 O ASP 67 -29.548 41.213 5.959 1.00 3.00 O ATOM 221 N VAL 68 -30.573 39.339 6.674 1.00 3.00 N ATOM 222 CA VAL 68 -31.315 39.159 5.428 1.00 3.00 C ATOM 223 C VAL 68 -32.239 40.348 5.129 1.00 3.00 C ATOM 224 O VAL 68 -32.416 40.731 3.979 1.00 3.00 O ATOM 225 N ALA 69 -32.821 40.921 6.177 1.00 3.00 N ATOM 226 CA ALA 69 -33.723 42.048 6.033 1.00 3.00 C ATOM 227 C ALA 69 -32.961 43.318 5.677 1.00 3.00 C ATOM 228 O ALA 69 -33.296 43.989 4.693 1.00 3.00 O ATOM 229 N GLY 70 -31.931 43.630 6.468 1.00 3.00 N ATOM 230 CA GLY 70 -31.232 44.904 6.366 1.00 3.00 C ATOM 231 C GLY 70 -30.021 44.936 5.435 1.00 3.00 C ATOM 232 O GLY 70 -29.818 45.941 4.758 1.00 3.00 O ATOM 233 N SER 71 -29.229 43.863 5.384 1.00 3.00 N ATOM 234 CA SER 71 -28.033 43.848 4.524 1.00 3.00 C ATOM 235 C SER 71 -28.395 43.497 3.082 1.00 3.00 C ATOM 236 O SER 71 -28.145 44.265 2.159 1.00 3.00 O ATOM 237 N ASP 72 -28.956 42.310 2.909 1.00 3.00 N ATOM 238 CA ASP 72 -29.646 41.907 1.692 1.00 3.00 C ATOM 239 C ASP 72 -31.007 42.476 1.950 1.00 3.00 C ATOM 240 O ASP 72 -31.296 42.871 3.079 1.00 3.00 O ATOM 241 N LYS 73 -31.874 42.563 0.968 1.00 3.00 N ATOM 242 CA LYS 73 -33.165 43.076 1.369 1.00 3.00 C ATOM 243 C LYS 73 -34.205 42.041 1.073 1.00 3.00 C ATOM 244 O LYS 73 -34.921 42.104 0.072 1.00 3.00 O ATOM 245 N TYR 74 -34.241 41.056 1.959 1.00 3.00 N ATOM 246 CA TYR 74 -35.086 39.889 1.816 1.00 3.00 C ATOM 247 C TYR 74 -35.778 39.570 3.148 1.00 3.00 C ATOM 248 O TYR 74 -35.144 39.585 4.205 1.00 3.00 O ATOM 249 N GLN 75 -37.079 39.299 3.085 1.00 3.00 N ATOM 250 CA GLN 75 -37.866 38.954 4.268 1.00 3.00 C ATOM 251 C GLN 75 -37.605 37.520 4.716 1.00 3.00 C ATOM 252 O GLN 75 -37.398 36.643 3.881 1.00 3.00 O ATOM 253 N VAL 76 -37.576 37.284 6.040 1.00 3.00 N ATOM 254 CA VAL 76 -37.559 35.926 6.569 1.00 3.00 C ATOM 255 C VAL 76 -38.755 35.104 6.112 1.00 3.00 C ATOM 256 O VAL 76 -38.631 33.898 5.945 1.00 3.00 O ATOM 257 N ASN 77 -39.895 35.751 5.910 1.00 3.00 N ATOM 258 CA ASN 77 -41.107 35.074 5.457 1.00 3.00 C ATOM 259 C ASN 77 -42.220 36.086 5.288 1.00 3.00 C ATOM 260 O ASN 77 -42.040 37.256 5.636 1.00 3.00 O ATOM 261 N ASN 78 -43.366 35.655 4.757 1.00 3.00 N ATOM 262 CA ASN 78 -44.484 36.574 4.543 1.00 3.00 C ATOM 263 C ASN 78 -45.308 36.887 5.765 1.00 3.00 C ATOM 264 O ASN 78 -45.420 38.065 6.143 1.00 3.00 O ATOM 265 N LYS 79 -45.909 35.858 6.351 1.00 3.00 N ATOM 266 CA LYS 79 -46.660 35.975 7.602 1.00 3.00 C ATOM 267 C LYS 79 -45.590 35.396 8.502 1.00 3.00 C ATOM 268 O LYS 79 -45.094 34.299 8.211 1.00 3.00 O ATOM 269 N HIS 80 -45.192 36.103 9.542 1.00 3.00 N ATOM 270 CA HIS 80 -44.118 35.579 10.375 1.00 3.00 C ATOM 271 C HIS 80 -44.596 35.032 11.703 1.00 3.00 C ATOM 272 O HIS 80 -45.087 35.758 12.538 1.00 3.00 O ATOM 273 N ASP 81 -44.420 33.715 11.863 1.00 9.00 N ATOM 274 CA ASP 81 -44.784 32.969 13.054 1.00 9.00 C ATOM 275 C ASP 81 -43.948 33.425 14.276 1.00 9.00 C ATOM 276 O ASP 81 -42.718 33.428 14.235 1.00 9.00 O ATOM 277 N ASP 82 -44.647 33.795 15.363 1.00 9.00 N ATOM 278 CA ASP 82 -44.058 34.277 16.610 1.00 9.00 C ATOM 279 C ASP 82 -42.696 34.956 16.491 1.00 9.00 C ATOM 280 O ASP 82 -41.800 34.656 17.261 1.00 9.00 O ATOM 281 N LYS 83 -42.563 35.889 15.553 1.00 3.00 N ATOM 282 CA LYS 83 -41.286 36.588 15.351 1.00 3.00 C ATOM 283 C LYS 83 -40.789 37.432 16.522 1.00 3.00 C ATOM 284 O LYS 83 -39.615 37.790 16.539 1.00 3.00 O ATOM 285 N TYR 84 -41.635 37.762 17.491 1.00 3.00 N ATOM 286 CA TYR 84 -41.149 38.552 18.610 1.00 3.00 C ATOM 287 C TYR 84 -40.574 37.664 19.691 1.00 3.00 C ATOM 288 O TYR 84 -40.126 38.166 20.722 1.00 3.00 O ATOM 289 N SER 85 -40.517 36.351 19.441 1.00 3.00 N ATOM 290 CA SER 85 -39.967 35.378 20.413 1.00 3.00 C ATOM 291 C SER 85 -38.629 35.741 21.093 1.00 3.00 C ATOM 292 O SER 85 -37.704 36.170 20.419 1.00 3.00 O ATOM 293 N PRO 86 -38.531 35.562 22.407 1.00 3.00 N ATOM 294 CA PRO 86 -37.310 35.915 23.140 1.00 3.00 C ATOM 295 C PRO 86 -37.429 37.247 23.867 1.00 3.00 C ATOM 296 O PRO 86 -38.366 38.004 23.634 1.00 3.00 O ATOM 297 N LEU 87 -36.477 37.533 24.746 1.00 3.00 N ATOM 298 CA LEU 87 -36.556 38.711 25.607 1.00 3.00 C ATOM 299 C LEU 87 -36.040 40.003 24.965 1.00 3.00 C ATOM 300 O LEU 87 -36.164 41.076 25.546 1.00 3.00 O ATOM 301 N PRO 88 -35.457 39.908 23.775 1.00 3.00 N ATOM 302 CA PRO 88 -35.044 41.106 23.048 1.00 3.00 C ATOM 303 C PRO 88 -35.829 41.196 21.748 1.00 3.00 C ATOM 304 O PRO 88 -35.338 41.716 20.746 1.00 3.00 O ATOM 305 N CYS 89 -37.063 40.704 21.798 1.00 3.00 N ATOM 306 CA CYS 89 -37.956 40.648 20.652 1.00 3.00 C ATOM 307 C CYS 89 -38.303 42.016 20.084 1.00 3.00 C ATOM 308 O CYS 89 -38.626 42.130 18.904 1.00 3.00 O ATOM 309 N SER 90 -38.245 43.054 20.907 1.00 3.00 N ATOM 310 CA SER 90 -38.532 44.409 20.427 1.00 3.00 C ATOM 311 C SER 90 -37.562 44.905 19.364 1.00 3.00 C ATOM 312 O SER 90 -37.976 45.595 18.438 1.00 3.00 O ATOM 313 N LYS 91 -36.283 44.561 19.493 1.00 3.00 N ATOM 314 CA LYS 91 -35.290 44.956 18.502 1.00 3.00 C ATOM 315 C LYS 91 -35.738 44.453 17.142 1.00 3.00 C ATOM 316 O LYS 91 -35.729 45.193 16.163 1.00 3.00 O ATOM 317 N ILE 92 -36.172 43.197 17.110 1.00 3.00 N ATOM 318 CA ILE 92 -36.642 42.557 15.893 1.00 3.00 C ATOM 319 C ILE 92 -37.965 43.155 15.399 1.00 3.00 C ATOM 320 O ILE 92 -38.098 43.476 14.218 1.00 3.00 O ATOM 321 N ILE 93 -38.934 43.309 16.301 1.00 3.00 N ATOM 322 CA ILE 93 -40.248 43.848 15.945 1.00 3.00 C ATOM 323 C ILE 93 -40.134 45.228 15.295 1.00 3.00 C ATOM 324 O ILE 93 -40.801 45.516 14.316 1.00 3.00 O ATOM 325 N GLN 94 -39.256 46.064 15.822 1.00 3.00 N ATOM 326 CA GLN 94 -38.984 47.369 15.241 1.00 3.00 C ATOM 327 C GLN 94 -38.490 47.331 13.804 1.00 3.00 C ATOM 328 O GLN 94 -38.818 48.210 13.016 1.00 3.00 O ATOM 329 N ARG 95 -37.692 46.325 13.475 1.00 3.00 N ATOM 330 CA ARG 95 -37.249 46.115 12.111 1.00 3.00 C ATOM 331 C ARG 95 -38.548 45.694 11.451 1.00 3.00 C ATOM 332 O ARG 95 -38.574 45.378 10.275 1.00 3.00 O ATOM 333 N ALA 96 -39.633 45.663 12.226 1.00 3.00 N ATOM 334 CA ALA 96 -40.964 45.260 11.722 1.00 3.00 C ATOM 335 C ALA 96 -41.163 43.780 11.289 1.00 3.00 C ATOM 336 O ALA 96 -40.775 43.361 10.187 1.00 3.00 O ATOM 337 N GLU 97 -41.800 43.031 12.185 1.00 3.00 N ATOM 338 CA GLU 97 -42.101 41.619 12.019 1.00 3.00 C ATOM 339 C GLU 97 -43.386 41.310 11.232 1.00 3.00 C ATOM 340 O GLU 97 -43.548 40.197 10.726 1.00 3.00 O ATOM 341 N GLU 98 -44.306 42.287 11.147 1.00 3.00 N ATOM 342 CA GLU 98 -45.583 42.145 10.424 1.00 3.00 C ATOM 343 C GLU 98 -46.343 40.871 10.772 1.00 3.00 C ATOM 344 O GLU 98 -46.970 40.274 9.894 1.00 3.00 O ATOM 345 N LEU 99 -46.280 40.460 12.029 1.00 3.00 N ATOM 346 CA LEU 99 -46.948 39.234 12.449 1.00 3.00 C ATOM 347 C LEU 99 -46.515 38.851 13.848 1.00 3.00 C ATOM 348 O LEU 99 -45.441 39.251 14.306 1.00 3.00 O ATOM 349 N VAL 100 -47.341 38.053 14.516 1.00 3.00 N ATOM 350 CA VAL 100 -47.055 37.663 15.895 1.00 3.00 C ATOM 351 C VAL 100 -45.934 37.572 16.920 1.00 3.00 C ATOM 352 O VAL 100 -44.866 37.041 16.635 1.00 3.00 O ATOM 353 N GLY 101 -46.209 38.051 18.128 1.00 3.00 N ATOM 354 CA GLY 101 -45.267 38.046 19.245 1.00 3.00 C ATOM 355 C GLY 101 -45.640 36.907 20.214 1.00 3.00 C ATOM 356 O GLY 101 -46.640 36.976 20.912 1.00 3.00 O ATOM 357 N GLN 102 -44.848 35.838 20.215 1.00 3.00 N ATOM 358 CA GLN 102 -45.105 34.675 21.077 1.00 3.00 C ATOM 359 C GLN 102 -44.092 34.670 22.212 1.00 3.00 C ATOM 360 O GLN 102 -42.965 34.208 22.027 1.00 3.00 O ATOM 361 N GLU 103 -44.487 35.153 23.400 1.00 3.00 N ATOM 362 CA GLU 103 -43.502 35.327 24.459 1.00 3.00 C ATOM 363 C GLU 103 -42.818 34.024 24.892 1.00 3.00 C ATOM 364 O GLU 103 -41.679 34.058 25.362 1.00 3.00 O ATOM 365 N VAL 104 -43.492 32.890 24.724 1.00 3.00 N ATOM 366 CA VAL 104 -42.980 31.622 25.243 1.00 3.00 C ATOM 367 C VAL 104 -43.233 30.439 24.305 1.00 3.00 C ATOM 368 O VAL 104 -44.278 29.790 24.369 1.00 3.00 O ATOM 369 N LEU 105 -42.261 30.155 23.447 1.00 3.00 N ATOM 370 CA LEU 105 -42.407 29.113 22.445 1.00 3.00 C ATOM 371 C LEU 105 -42.076 27.729 23.002 1.00 3.00 C ATOM 372 O LEU 105 -41.018 27.532 23.620 1.00 3.00 O ATOM 373 N TYR 106 -42.996 26.785 22.773 1.00 3.00 N ATOM 374 CA TYR 106 -42.781 25.364 23.063 1.00 3.00 C ATOM 375 C TYR 106 -42.277 24.590 21.835 1.00 3.00 C ATOM 376 O TYR 106 -41.322 23.816 21.930 1.00 3.00 O ATOM 377 N LYS 107 -42.906 24.802 20.684 1.00 3.00 N ATOM 378 CA LYS 107 -42.605 23.994 19.504 1.00 3.00 C ATOM 379 C LYS 107 -41.995 23.032 18.499 1.00 3.00 C ATOM 380 O LYS 107 -40.942 22.456 18.762 1.00 3.00 O ATOM 381 N LEU 108 -42.645 22.886 17.343 1.00 3.00 N ATOM 382 CA LEU 108 -42.189 21.993 16.270 1.00 3.00 C ATOM 383 C LEU 108 -42.786 22.374 14.911 1.00 3.00 C ATOM 384 O LEU 108 -43.831 23.022 14.844 1.00 3.00 O ATOM 385 N THR 109 -42.116 21.962 13.841 1.00 3.00 N ATOM 386 CA THR 109 -42.579 22.252 12.493 1.00 3.00 C ATOM 387 C THR 109 -42.040 21.249 11.470 1.00 3.00 C ATOM 388 O THR 109 -40.993 20.643 11.665 1.00 3.00 O ATOM 389 N SER 110 -42.814 21.035 10.402 1.00 3.00 N ATOM 390 CA SER 110 -42.431 20.122 9.337 1.00 3.00 C ATOM 391 C SER 110 -42.461 20.862 8.022 1.00 3.00 C ATOM 392 O SER 110 -43.352 21.682 7.778 1.00 3.00 O ATOM 393 N GLU 111 -41.522 20.514 7.141 1.00 3.00 N ATOM 394 CA GLU 111 -41.404 21.089 5.796 1.00 3.00 C ATOM 395 C GLU 111 -41.199 22.592 5.715 1.00 3.00 C ATOM 396 O GLU 111 -41.692 23.252 4.801 1.00 3.00 O ATOM 397 N ASN 112 -40.433 23.120 6.663 1.00 3.00 N ATOM 398 CA ASN 112 -40.135 24.545 6.689 1.00 3.00 C ATOM 399 C ASN 112 -41.098 24.685 7.862 1.00 3.00 C ATOM 400 O ASN 112 -41.977 23.845 8.039 1.00 3.00 O ATOM 401 N CYS 113 -40.959 25.754 8.644 1.00 3.00 N ATOM 402 CA CYS 113 -41.949 26.037 9.691 1.00 3.00 C ATOM 403 C CYS 113 -43.291 26.418 9.056 1.00 3.00 C ATOM 404 O CYS 113 -43.315 27.058 8.008 1.00 3.00 O ATOM 405 N GLU 114 -44.391 25.986 9.669 1.00 3.00 N ATOM 406 CA GLU 114 -45.719 26.449 9.258 1.00 3.00 C ATOM 407 C GLU 114 -46.663 26.735 10.432 1.00 3.00 C ATOM 408 O GLU 114 -47.689 27.389 10.257 1.00 3.00 O ATOM 409 N HIS 115 -46.285 26.269 11.623 1.00 3.00 N ATOM 410 CA HIS 115 -46.968 26.604 12.876 1.00 3.00 C ATOM 411 C HIS 115 -45.979 26.754 14.042 1.00 3.00 C ATOM 412 O HIS 115 -44.992 26.018 14.112 1.00 3.00 O ATOM 413 N PHE 116 -46.238 27.687 14.960 1.00 3.00 N ATOM 414 CA PHE 116 -45.618 27.613 16.267 1.00 3.00 C ATOM 415 C PHE 116 -46.951 27.207 16.896 1.00 3.00 C ATOM 416 O PHE 116 -47.642 28.042 17.484 1.00 3.00 O ATOM 417 N VAL 117 -47.305 25.942 16.712 1.00 3.00 N ATOM 418 CA VAL 117 -48.562 25.359 17.174 1.00 3.00 C ATOM 419 C VAL 117 -49.726 26.253 16.734 1.00 3.00 C ATOM 420 O VAL 117 -49.794 26.612 15.551 1.00 3.00 O ATOM 421 N ASN 118 -50.616 26.631 17.656 1.00 3.00 N ATOM 422 CA ASN 118 -51.769 27.450 17.274 1.00 3.00 C ATOM 423 C ASN 118 -51.615 28.944 17.462 1.00 3.00 C ATOM 424 O ASN 118 -52.549 29.686 17.171 1.00 3.00 O ATOM 425 N GLU 119 -50.461 29.385 17.939 1.00 3.00 N ATOM 426 CA GLU 119 -50.205 30.818 18.133 1.00 3.00 C ATOM 427 C GLU 119 -49.775 31.525 16.849 1.00 3.00 C ATOM 428 O GLU 119 -50.173 32.661 16.592 1.00 3.00 O ATOM 429 N LEU 120 -48.942 30.868 16.051 1.00 3.00 N ATOM 430 CA LEU 120 -48.469 31.426 14.767 1.00 3.00 C ATOM 431 C LEU 120 -48.722 30.375 13.672 1.00 3.00 C ATOM 432 O LEU 120 -48.345 29.219 13.824 1.00 3.00 O ATOM 433 N ARG 121 -49.348 30.788 12.584 1.00 3.00 N ATOM 434 CA ARG 121 -49.655 29.878 11.476 1.00 3.00 C ATOM 435 C ARG 121 -48.722 30.989 11.047 1.00 3.00 C ATOM 436 O ARG 121 -49.077 32.157 11.135 1.00 3.00 O ATOM 437 N TYR 122 -47.521 30.613 10.607 1.00 3.00 N ATOM 438 CA TYR 122 -46.450 31.555 10.205 1.00 3.00 C ATOM 439 C TYR 122 -45.453 30.858 9.258 1.00 3.00 C ATOM 440 O TYR 122 -45.458 29.627 9.145 1.00 3.00 O ATOM 441 N GLY 123 -44.595 31.633 8.596 1.00 3.00 N ATOM 442 CA GLY 123 -43.594 31.078 7.670 1.00 3.00 C ATOM 443 C GLY 123 -42.220 30.954 8.261 1.00 3.00 C ATOM 444 O GLY 123 -41.351 30.279 7.699 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 372 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 83.65 42.6 148 76.7 193 ARMSMC SECONDARY STRUCTURE . . 73.21 48.1 81 75.0 108 ARMSMC SURFACE . . . . . . . . 86.62 42.3 97 80.2 121 ARMSMC BURIED . . . . . . . . 77.69 43.1 51 70.8 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 84 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 75 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 37 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 18.37 (Number of atoms: 93) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 18.37 93 93.9 99 CRMSCA CRN = ALL/NP . . . . . 0.1975 CRMSCA SECONDARY STRUCTURE . . 18.85 54 100.0 54 CRMSCA SURFACE . . . . . . . . 17.43 60 95.2 63 CRMSCA BURIED . . . . . . . . 19.96 33 91.7 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 18.29 372 76.1 489 CRMSMC SECONDARY STRUCTURE . . 18.77 216 80.3 269 CRMSMC SURFACE . . . . . . . . 17.30 240 77.2 311 CRMSMC BURIED . . . . . . . . 19.95 132 74.2 178 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 417 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 351 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 252 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 281 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 136 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 18.29 372 45.8 813 CRMSALL SECONDARY STRUCTURE . . 18.77 216 46.2 468 CRMSALL SURFACE . . . . . . . . 17.30 240 45.0 533 CRMSALL BURIED . . . . . . . . 19.95 132 47.1 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.034 0.655 0.327 93 93.9 99 ERRCA SECONDARY STRUCTURE . . 14.350 0.653 0.327 54 100.0 54 ERRCA SURFACE . . . . . . . . 13.149 0.642 0.321 60 95.2 63 ERRCA BURIED . . . . . . . . 15.642 0.678 0.339 33 91.7 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.923 0.651 0.325 372 76.1 489 ERRMC SECONDARY STRUCTURE . . 14.234 0.648 0.324 216 80.3 269 ERRMC SURFACE . . . . . . . . 12.996 0.638 0.319 240 77.2 311 ERRMC BURIED . . . . . . . . 15.607 0.674 0.337 132 74.2 178 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 417 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 351 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 252 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 281 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 136 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.923 0.651 0.325 372 45.8 813 ERRALL SECONDARY STRUCTURE . . 14.234 0.648 0.324 216 46.2 468 ERRALL SURFACE . . . . . . . . 12.996 0.638 0.319 240 45.0 533 ERRALL BURIED . . . . . . . . 15.607 0.674 0.337 132 47.1 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 2 11 93 99 DISTCA CA (P) 0.00 0.00 1.01 2.02 11.11 99 DISTCA CA (RMS) 0.00 0.00 2.53 3.77 7.12 DISTCA ALL (N) 0 0 3 12 49 372 813 DISTALL ALL (P) 0.00 0.00 0.37 1.48 6.03 813 DISTALL ALL (RMS) 0.00 0.00 2.52 4.05 7.21 DISTALL END of the results output