####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 331), selected 38 , name T0630TS301_1-D1 # Molecule2: number of CA atoms 99 ( 813), selected 38 , name T0630-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0630TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 7 - 65 1.78 1.78 LCS_AVERAGE: 38.38 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 7 - 65 1.78 1.78 LCS_AVERAGE: 38.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 22 - 38 0.86 1.96 LCS_AVERAGE: 11.11 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 38 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 7 E 7 10 38 38 3 3 13 20 29 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT P 8 P 8 11 38 38 4 28 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT K 9 K 9 11 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT P 10 P 10 11 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT G 11 G 11 11 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT D 12 D 12 11 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 13 L 13 11 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 14 I 14 11 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT E 15 E 15 11 38 38 15 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 16 I 16 11 38 38 14 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT F 17 F 17 11 38 38 15 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT R 18 R 18 11 38 38 2 4 7 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT P 19 P 19 3 38 38 3 3 11 24 30 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT F 20 F 20 3 38 38 3 3 18 29 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT Y 21 Y 21 3 38 38 3 3 5 7 12 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT R 22 R 22 15 38 38 6 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT H 23 H 23 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT W 24 W 24 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT A 25 A 25 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 26 I 26 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT Y 27 Y 27 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT V 28 V 28 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT G 29 G 29 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT D 30 D 30 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT G 31 G 31 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT Y 32 Y 32 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT V 33 V 33 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT V 34 V 34 15 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT H 35 H 35 15 38 38 20 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT P 38 P 38 15 38 38 3 10 24 30 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT A 58 A 58 4 38 38 3 8 16 20 25 34 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT I 59 I 59 7 38 38 12 27 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT V 60 V 60 7 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT K 61 K 61 7 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT K 62 K 62 7 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT E 63 E 63 7 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 64 L 64 7 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_GDT L 65 L 65 7 38 38 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 LCS_AVERAGE LCS_A: 29.29 ( 11.11 38.38 38.38 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 23 29 31 31 33 35 37 38 38 38 38 38 38 38 38 38 38 38 38 38 GDT PERCENT_AT 23.23 29.29 31.31 31.31 33.33 35.35 37.37 38.38 38.38 38.38 38.38 38.38 38.38 38.38 38.38 38.38 38.38 38.38 38.38 38.38 GDT RMS_LOCAL 0.28 0.46 0.57 0.57 0.91 1.37 1.59 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 GDT RMS_ALL_AT 2.04 2.15 2.08 2.08 1.98 1.84 1.81 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 # Checking swapping # possible swapping detected: E 7 E 7 # possible swapping detected: F 20 F 20 # possible swapping detected: Y 21 Y 21 # possible swapping detected: Y 32 Y 32 # possible swapping detected: E 63 E 63 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 7 E 7 3.237 0 0.562 1.117 11.752 65.119 32.116 LGA P 8 P 8 0.847 0 0.138 0.368 2.723 86.071 77.007 LGA K 9 K 9 0.542 0 0.044 0.688 1.956 90.476 85.556 LGA P 10 P 10 0.471 0 0.040 0.057 0.780 95.238 95.918 LGA G 11 G 11 0.877 0 0.033 0.033 1.018 88.214 88.214 LGA D 12 D 12 0.875 0 0.036 0.102 0.878 90.476 90.476 LGA L 13 L 13 1.077 0 0.031 0.133 1.368 81.429 81.429 LGA I 14 I 14 1.136 0 0.065 0.175 1.283 81.429 86.012 LGA E 15 E 15 1.887 0 0.127 0.833 2.528 66.905 68.413 LGA I 16 I 16 1.920 0 0.054 0.122 2.269 75.000 70.893 LGA F 17 F 17 2.231 0 0.319 1.307 7.284 64.762 45.108 LGA R 18 R 18 2.555 0 0.028 0.984 14.044 59.167 26.537 LGA P 19 P 19 3.785 0 0.288 0.373 6.163 32.262 37.075 LGA F 20 F 20 3.331 0 0.643 0.472 7.212 48.571 30.693 LGA Y 21 Y 21 3.739 0 0.048 1.378 13.571 52.381 19.643 LGA R 22 R 22 2.113 0 0.644 1.246 13.860 72.976 31.212 LGA H 23 H 23 0.734 0 0.048 0.181 1.052 88.214 90.524 LGA W 24 W 24 0.119 0 0.034 1.146 6.859 97.619 68.299 LGA A 25 A 25 0.240 0 0.052 0.053 0.613 100.000 98.095 LGA I 26 I 26 0.111 0 0.046 0.143 0.936 100.000 97.619 LGA Y 27 Y 27 0.267 0 0.050 0.160 0.542 100.000 99.206 LGA V 28 V 28 0.165 0 0.075 1.404 2.694 100.000 87.755 LGA G 29 G 29 0.373 0 0.043 0.043 0.446 100.000 100.000 LGA D 30 D 30 0.591 0 0.029 0.087 1.142 92.857 90.536 LGA G 31 G 31 0.504 0 0.061 0.061 0.755 90.476 90.476 LGA Y 32 Y 32 0.484 0 0.096 0.144 0.992 97.619 95.238 LGA V 33 V 33 0.477 0 0.021 0.032 0.726 95.238 95.918 LGA V 34 V 34 0.631 0 0.039 0.132 0.735 95.238 93.197 LGA H 35 H 35 1.142 0 0.069 1.061 3.031 81.429 76.667 LGA P 38 P 38 2.707 0 0.171 0.218 3.062 55.357 57.211 LGA A 58 A 58 4.843 0 0.139 0.190 6.193 38.214 34.000 LGA I 59 I 59 0.874 0 0.147 0.248 3.912 81.786 71.845 LGA V 60 V 60 0.934 0 0.044 0.198 1.328 85.952 84.014 LGA K 61 K 61 1.478 0 0.027 0.858 3.197 83.690 75.185 LGA K 62 K 62 0.993 0 0.057 0.723 4.788 83.690 67.407 LGA E 63 E 63 1.062 0 0.035 0.829 2.536 88.214 80.794 LGA L 64 L 64 1.037 0 0.078 1.358 3.112 81.429 75.417 LGA L 65 L 65 0.954 0 0.037 0.046 1.390 85.952 84.821 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 38 152 152 100.00 318 318 100.00 99 SUMMARY(RMSD_GDC): 1.782 1.748 3.646 31.045 28.086 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 99 4.0 38 1.78 34.343 36.067 2.019 LGA_LOCAL RMSD: 1.782 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.782 Number of assigned atoms: 38 Std_ASGN_ATOMS RMSD: 1.782 Standard rmsd on all 38 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.428031 * X + -0.399105 * Y + -0.810867 * Z + -6.793197 Y_new = -0.196790 * X + -0.916840 * Y + 0.347386 * Z + 38.568066 Z_new = -0.882079 * X + 0.010878 * Y + -0.470976 * Z + 9.587460 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.430938 1.080257 3.118499 [DEG: -24.6909 61.8942 178.6768 ] ZXZ: -1.975555 2.061193 -1.558464 [DEG: -113.1909 118.0976 -89.2934 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0630TS301_1-D1 REMARK 2: T0630-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0630TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 99 4.0 38 1.78 36.067 1.78 REMARK ---------------------------------------------------------- MOLECULE T0630TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0630 REMARK MODEL 1 REMARK PARENT N/A ATOM 40 N GLU 7 -9.326 22.999 10.292 1.00 0.00 N ATOM 41 CA GLU 7 -10.664 23.563 10.187 1.00 0.00 C ATOM 42 CB GLU 7 -11.472 23.269 11.454 1.00 0.00 C ATOM 43 CG GLU 7 -11.727 21.792 11.699 1.00 0.00 C ATOM 44 CD GLU 7 -12.562 21.542 12.940 1.00 0.00 C ATOM 45 OE1 GLU 7 -12.847 22.516 13.670 1.00 0.00 O ATOM 46 OE2 GLU 7 -12.928 20.375 13.185 1.00 0.00 O ATOM 47 O GLU 7 -11.789 25.702 10.081 1.00 0.00 O ATOM 48 C GLU 7 -10.716 25.078 9.935 1.00 0.00 C ATOM 49 N PRO 8 -9.593 25.648 9.495 1.00 0.00 N ATOM 50 CA PRO 8 -9.528 27.072 9.236 1.00 0.00 C ATOM 51 CB PRO 8 -8.089 27.296 8.765 1.00 0.00 C ATOM 52 CG PRO 8 -7.640 25.957 8.284 1.00 0.00 C ATOM 53 CD PRO 8 -8.356 24.945 9.135 1.00 0.00 C ATOM 54 O PRO 8 -10.662 26.822 7.141 1.00 0.00 O ATOM 55 C PRO 8 -10.532 27.481 8.173 1.00 0.00 C ATOM 56 N LYS 9 -11.229 28.579 8.440 1.00 0.00 N ATOM 57 CA LYS 9 -12.196 29.164 7.509 1.00 0.00 C ATOM 58 CB LYS 9 -13.623 28.956 8.018 1.00 0.00 C ATOM 59 CG LYS 9 -14.032 27.499 8.146 1.00 0.00 C ATOM 60 CD LYS 9 -15.450 27.369 8.679 1.00 0.00 C ATOM 61 CE LYS 9 -15.855 25.910 8.816 1.00 0.00 C ATOM 62 NZ LYS 9 -15.083 25.214 9.883 1.00 0.00 N ATOM 63 O LYS 9 -11.283 31.309 8.135 1.00 0.00 O ATOM 64 C LYS 9 -11.911 30.657 7.304 1.00 0.00 C ATOM 65 N PRO 10 -12.356 31.173 6.168 1.00 0.00 N ATOM 66 CA PRO 10 -12.320 32.586 5.894 1.00 0.00 C ATOM 67 CB PRO 10 -13.231 32.752 4.675 1.00 0.00 C ATOM 68 CG PRO 10 -13.130 31.449 3.955 1.00 0.00 C ATOM 69 CD PRO 10 -13.082 30.387 5.019 1.00 0.00 C ATOM 70 O PRO 10 -13.863 33.065 7.679 1.00 0.00 O ATOM 71 C PRO 10 -12.836 33.387 7.096 1.00 0.00 C ATOM 72 N GLY 11 -12.101 34.440 7.436 1.00 0.00 N ATOM 73 CA GLY 11 -12.408 35.286 8.574 1.00 0.00 C ATOM 74 O GLY 11 -11.626 35.740 10.792 1.00 0.00 O ATOM 75 C GLY 11 -11.747 34.893 9.875 1.00 0.00 C ATOM 76 N ASP 12 -11.325 33.625 9.986 1.00 0.00 N ATOM 77 CA ASP 12 -10.707 33.182 11.214 1.00 0.00 C ATOM 78 CB ASP 12 -10.354 31.696 11.129 1.00 0.00 C ATOM 79 CG ASP 12 -11.569 30.799 11.276 1.00 0.00 C ATOM 80 OD1 ASP 12 -12.631 31.303 11.698 1.00 0.00 O ATOM 81 OD2 ASP 12 -11.458 29.594 10.968 1.00 0.00 O ATOM 82 O ASP 12 -8.787 34.461 10.541 1.00 0.00 O ATOM 83 C ASP 12 -9.461 34.031 11.480 1.00 0.00 C ATOM 84 N LEU 13 -9.204 34.328 12.755 1.00 0.00 N ATOM 85 CA LEU 13 -7.973 35.048 13.126 1.00 0.00 C ATOM 86 CB LEU 13 -8.234 35.984 14.307 1.00 0.00 C ATOM 87 CG LEU 13 -9.124 37.199 14.025 1.00 0.00 C ATOM 88 CD1 LEU 13 -9.142 38.139 15.218 1.00 0.00 C ATOM 89 CD2 LEU 13 -8.648 37.933 12.779 1.00 0.00 C ATOM 90 O LEU 13 -7.129 33.040 14.169 1.00 0.00 O ATOM 91 C LEU 13 -6.883 34.031 13.459 1.00 0.00 C ATOM 92 N ILE 14 -5.694 34.279 12.924 1.00 0.00 N ATOM 93 CA ILE 14 -4.552 33.378 13.118 1.00 0.00 C ATOM 94 CB ILE 14 -4.004 32.860 11.776 1.00 0.00 C ATOM 95 CG1 ILE 14 -5.154 32.479 10.842 1.00 0.00 C ATOM 96 CG2 ILE 14 -3.050 31.698 12.002 1.00 0.00 C ATOM 97 CD1 ILE 14 -6.076 31.420 11.408 1.00 0.00 C ATOM 98 O ILE 14 -3.215 35.298 13.648 1.00 0.00 O ATOM 99 C ILE 14 -3.482 34.121 13.902 1.00 0.00 C ATOM 100 N GLU 15 -2.885 33.417 14.864 1.00 0.00 N ATOM 101 CA GLU 15 -1.961 33.995 15.813 1.00 0.00 C ATOM 102 CB GLU 15 -2.473 33.807 17.242 1.00 0.00 C ATOM 103 CG GLU 15 -3.783 34.523 17.532 1.00 0.00 C ATOM 104 CD GLU 15 -4.250 34.326 18.960 1.00 0.00 C ATOM 105 OE1 GLU 15 -3.685 33.458 19.657 1.00 0.00 O ATOM 106 OE2 GLU 15 -5.185 35.040 19.383 1.00 0.00 O ATOM 107 O GLU 15 -0.420 32.238 15.345 1.00 0.00 O ATOM 108 C GLU 15 -0.571 33.403 15.690 1.00 0.00 C ATOM 109 N ILE 16 0.430 34.243 15.944 1.00 0.00 N ATOM 110 CA ILE 16 1.826 33.817 15.912 1.00 0.00 C ATOM 111 CB ILE 16 2.574 34.419 14.709 1.00 0.00 C ATOM 112 CG1 ILE 16 1.927 33.968 13.399 1.00 0.00 C ATOM 113 CG2 ILE 16 4.050 34.058 14.766 1.00 0.00 C ATOM 114 CD1 ILE 16 2.456 34.688 12.177 1.00 0.00 C ATOM 115 O ILE 16 2.255 35.328 17.728 1.00 0.00 O ATOM 116 C ILE 16 2.474 34.212 17.217 1.00 0.00 C ATOM 117 N PHE 17 3.288 33.299 17.768 1.00 0.00 N ATOM 118 CA PHE 17 3.898 33.521 19.059 1.00 0.00 C ATOM 119 CB PHE 17 3.260 32.616 20.114 1.00 0.00 C ATOM 120 CG PHE 17 3.486 31.151 19.871 1.00 0.00 C ATOM 121 CD1 PHE 17 4.577 30.502 20.425 1.00 0.00 C ATOM 122 CD2 PHE 17 2.607 30.420 19.092 1.00 0.00 C ATOM 123 CE1 PHE 17 4.785 29.155 20.201 1.00 0.00 C ATOM 124 CE2 PHE 17 2.814 29.071 18.870 1.00 0.00 C ATOM 125 CZ PHE 17 3.897 28.439 19.420 1.00 0.00 C ATOM 126 O PHE 17 5.916 32.493 18.204 1.00 0.00 O ATOM 127 C PHE 17 5.406 33.283 19.010 1.00 0.00 C ATOM 128 N ARG 18 6.102 33.965 19.889 1.00 0.00 N ATOM 129 CA ARG 18 7.551 33.798 20.050 1.00 0.00 C ATOM 130 CB ARG 18 8.083 34.737 21.135 1.00 0.00 C ATOM 131 CG ARG 18 9.591 34.691 21.311 1.00 0.00 C ATOM 132 CD ARG 18 10.059 35.709 22.338 1.00 0.00 C ATOM 133 NE ARG 18 11.505 35.664 22.534 1.00 0.00 N ATOM 134 CZ ARG 18 12.169 36.434 23.393 1.00 0.00 C ATOM 135 NH1 ARG 18 13.485 36.324 23.503 1.00 0.00 H ATOM 136 NH2 ARG 18 11.511 37.311 24.138 1.00 0.00 H ATOM 137 O ARG 18 7.090 31.550 20.862 1.00 0.00 O ATOM 138 C ARG 18 7.935 32.363 20.388 1.00 0.00 C ATOM 139 N PRO 19 5.629 30.826 23.151 1.00 0.00 N ATOM 140 CA PRO 19 5.706 31.974 24.032 1.00 0.00 C ATOM 141 CB PRO 19 7.052 32.616 23.685 1.00 0.00 C ATOM 142 CG PRO 19 7.859 31.503 23.104 1.00 0.00 C ATOM 143 CD PRO 19 6.892 30.643 22.338 1.00 0.00 C ATOM 144 O PRO 19 3.470 32.647 23.504 1.00 0.00 O ATOM 145 C PRO 19 4.591 32.991 23.856 1.00 0.00 C ATOM 146 N PHE 20 4.887 34.265 24.124 1.00 0.00 N ATOM 147 CA PHE 20 3.831 35.246 24.052 1.00 0.00 C ATOM 148 CB PHE 20 4.273 36.559 24.703 1.00 0.00 C ATOM 149 CG PHE 20 4.353 36.493 26.201 1.00 0.00 C ATOM 150 CD1 PHE 20 5.581 36.461 26.842 1.00 0.00 C ATOM 151 CD2 PHE 20 3.204 36.464 26.970 1.00 0.00 C ATOM 152 CE1 PHE 20 5.654 36.402 28.221 1.00 0.00 C ATOM 153 CE2 PHE 20 3.279 36.404 28.349 1.00 0.00 C ATOM 154 CZ PHE 20 4.497 36.374 28.975 1.00 0.00 C ATOM 155 O PHE 20 4.259 35.392 21.679 1.00 0.00 O ATOM 156 C PHE 20 3.436 35.469 22.586 1.00 0.00 C ATOM 157 N TYR 21 2.147 35.703 22.390 1.00 0.00 N ATOM 158 CA TYR 21 1.576 36.038 21.084 1.00 0.00 C ATOM 159 CB TYR 21 0.049 35.957 21.130 1.00 0.00 C ATOM 160 CG TYR 21 -0.485 34.548 21.264 1.00 0.00 C ATOM 161 CD1 TYR 21 -1.118 34.133 22.428 1.00 0.00 C ATOM 162 CD2 TYR 21 -0.354 33.637 20.222 1.00 0.00 C ATOM 163 CE1 TYR 21 -1.609 32.847 22.558 1.00 0.00 C ATOM 164 CE2 TYR 21 -0.838 32.347 20.335 1.00 0.00 C ATOM 165 CZ TYR 21 -1.469 31.957 21.515 1.00 0.00 C ATOM 166 OH TYR 21 -1.958 30.677 21.641 1.00 0.00 H ATOM 167 O TYR 21 2.037 38.281 21.603 1.00 0.00 O ATOM 168 C TYR 21 2.067 37.417 20.746 1.00 0.00 C ATOM 169 N ARG 22 2.559 37.608 19.526 1.00 0.00 N ATOM 170 CA ARG 22 2.926 38.943 19.062 1.00 0.00 C ATOM 171 CB ARG 22 4.441 39.141 19.136 1.00 0.00 C ATOM 172 CG ARG 22 5.238 38.149 18.303 1.00 0.00 C ATOM 173 CD ARG 22 6.730 38.290 18.552 1.00 0.00 C ATOM 174 NE ARG 22 7.510 37.349 17.754 1.00 0.00 N ATOM 175 CZ ARG 22 8.823 37.183 17.866 1.00 0.00 C ATOM 176 NH1 ARG 22 9.449 36.302 17.097 1.00 0.00 H ATOM 177 NH2 ARG 22 9.509 37.896 18.751 1.00 0.00 H ATOM 178 O ARG 22 2.868 40.313 17.130 1.00 0.00 O ATOM 179 C ARG 22 2.476 39.282 17.638 1.00 0.00 C ATOM 180 N HIS 23 1.682 38.442 16.983 1.00 0.00 N ATOM 181 CA HIS 23 1.156 38.798 15.667 1.00 0.00 C ATOM 182 CB HIS 23 2.139 38.389 14.568 1.00 0.00 C ATOM 183 CG HIS 23 1.723 38.817 13.195 1.00 0.00 C ATOM 184 CD2 HIS 23 1.321 38.138 11.971 1.00 0.00 C ATOM 185 ND1 HIS 23 1.645 40.140 12.820 1.00 0.00 N ATOM 186 CE1 HIS 23 1.245 40.210 11.537 1.00 0.00 C ATOM 187 NE2 HIS 23 1.050 39.010 11.023 1.00 0.00 N ATOM 188 O HIS 23 -0.459 37.042 15.936 1.00 0.00 O ATOM 189 C HIS 23 -0.195 38.142 15.439 1.00 0.00 C ATOM 190 N TRP 24 -1.047 38.829 14.681 1.00 0.00 N ATOM 191 CA TRP 24 -2.338 38.306 14.317 1.00 0.00 C ATOM 192 CB TRP 24 -3.423 38.860 15.245 1.00 0.00 C ATOM 193 CG TRP 24 -3.249 38.453 16.676 1.00 0.00 C ATOM 194 CD1 TRP 24 -3.856 37.407 17.311 1.00 0.00 C ATOM 195 CD2 TRP 24 -2.415 39.086 17.654 1.00 0.00 C ATOM 196 CE2 TRP 24 -2.565 38.370 18.854 1.00 0.00 C ATOM 197 CE3 TRP 24 -1.553 40.187 17.629 1.00 0.00 C ATOM 198 NE1 TRP 24 -3.452 37.348 18.622 1.00 0.00 N ATOM 199 CZ2 TRP 24 -1.887 38.719 20.023 1.00 0.00 C ATOM 200 CZ3 TRP 24 -0.883 40.530 18.788 1.00 0.00 C ATOM 201 CH2 TRP 24 -1.053 39.799 19.970 1.00 0.00 H ATOM 202 O TRP 24 -2.183 39.773 12.388 1.00 0.00 O ATOM 203 C TRP 24 -2.595 38.677 12.857 1.00 0.00 C ATOM 204 N ALA 25 -3.222 37.746 12.154 1.00 0.00 N ATOM 205 CA ALA 25 -3.621 37.941 10.763 1.00 0.00 C ATOM 206 CB ALA 25 -2.607 37.301 9.828 1.00 0.00 C ATOM 207 O ALA 25 -5.518 36.629 11.411 1.00 0.00 O ATOM 208 C ALA 25 -5.025 37.341 10.565 1.00 0.00 C ATOM 209 N ILE 26 -5.710 37.682 9.487 1.00 0.00 N ATOM 210 CA ILE 26 -7.003 37.052 9.191 1.00 0.00 C ATOM 211 CB ILE 26 -8.106 38.102 8.971 1.00 0.00 C ATOM 212 CG1 ILE 26 -9.459 37.420 8.763 1.00 0.00 C ATOM 213 CG2 ILE 26 -7.748 39.015 7.808 1.00 0.00 C ATOM 214 CD1 ILE 26 -10.640 38.361 8.863 1.00 0.00 C ATOM 215 O ILE 26 -6.386 36.594 6.942 1.00 0.00 O ATOM 216 C ILE 26 -6.877 36.161 7.989 1.00 0.00 C ATOM 217 N TYR 27 -7.350 34.927 8.141 1.00 0.00 N ATOM 218 CA TYR 27 -7.381 33.947 7.067 1.00 0.00 C ATOM 219 CB TYR 27 -7.758 32.568 7.612 1.00 0.00 C ATOM 220 CG TYR 27 -7.536 31.438 6.631 1.00 0.00 C ATOM 221 CD1 TYR 27 -6.288 31.229 6.060 1.00 0.00 C ATOM 222 CD2 TYR 27 -8.576 30.589 6.277 1.00 0.00 C ATOM 223 CE1 TYR 27 -6.076 30.199 5.161 1.00 0.00 C ATOM 224 CE2 TYR 27 -8.383 29.555 5.380 1.00 0.00 C ATOM 225 CZ TYR 27 -7.118 29.366 4.822 1.00 0.00 C ATOM 226 OH TYR 27 -6.910 28.341 3.927 1.00 0.00 H ATOM 227 O TYR 27 -9.490 34.783 6.308 1.00 0.00 O ATOM 228 C TYR 27 -8.360 34.384 5.993 1.00 0.00 C ATOM 229 N VAL 28 -7.944 34.318 4.736 1.00 0.00 N ATOM 230 CA VAL 28 -8.826 34.754 3.620 1.00 0.00 C ATOM 231 CB VAL 28 -8.212 35.935 2.845 1.00 0.00 C ATOM 232 CG1 VAL 28 -8.066 37.149 3.751 1.00 0.00 C ATOM 233 CG2 VAL 28 -6.867 35.543 2.253 1.00 0.00 C ATOM 234 O VAL 28 -9.695 33.832 1.566 1.00 0.00 O ATOM 235 C VAL 28 -9.124 33.613 2.648 1.00 0.00 C ATOM 236 N GLY 29 -8.779 32.391 3.062 1.00 0.00 N ATOM 237 CA GLY 29 -8.972 31.188 2.228 1.00 0.00 C ATOM 238 O GLY 29 -6.996 31.779 0.994 1.00 0.00 O ATOM 239 C GLY 29 -7.868 30.928 1.223 1.00 0.00 C ATOM 240 N ASP 30 -7.909 29.728 0.629 1.00 0.00 N ATOM 241 CA ASP 30 -6.912 29.278 -0.348 1.00 0.00 C ATOM 242 CB ASP 30 -7.045 30.066 -1.652 1.00 0.00 C ATOM 243 CG ASP 30 -8.390 29.863 -2.321 1.00 0.00 C ATOM 244 OD1 ASP 30 -8.963 28.762 -2.180 1.00 0.00 O ATOM 245 OD2 ASP 30 -8.870 30.805 -2.986 1.00 0.00 O ATOM 246 O ASP 30 -4.568 29.646 -0.612 1.00 0.00 O ATOM 247 C ASP 30 -5.469 29.397 0.161 1.00 0.00 C ATOM 248 N GLY 31 -5.265 29.280 1.468 1.00 0.00 N ATOM 249 CA GLY 31 -3.913 29.285 2.025 1.00 0.00 C ATOM 250 O GLY 31 -2.152 30.765 2.677 1.00 0.00 O ATOM 251 C GLY 31 -3.322 30.664 2.287 1.00 0.00 C ATOM 252 N TYR 32 -4.111 31.724 2.068 1.00 0.00 N ATOM 253 CA TYR 32 -3.612 33.108 2.222 1.00 0.00 C ATOM 254 CB TYR 32 -3.900 33.924 0.959 1.00 0.00 C ATOM 255 CG TYR 32 -3.148 33.448 -0.262 1.00 0.00 C ATOM 256 CD1 TYR 32 -3.679 32.462 -1.085 1.00 0.00 C ATOM 257 CD2 TYR 32 -1.912 33.986 -0.592 1.00 0.00 C ATOM 258 CE1 TYR 32 -3.000 32.021 -2.204 1.00 0.00 C ATOM 259 CE2 TYR 32 -1.217 33.558 -1.706 1.00 0.00 C ATOM 260 CZ TYR 32 -1.773 32.566 -2.514 1.00 0.00 C ATOM 261 OH TYR 32 -1.094 32.128 -3.628 1.00 0.00 H ATOM 262 O TYR 32 -5.226 33.391 3.986 1.00 0.00 O ATOM 263 C TYR 32 -4.213 33.828 3.432 1.00 0.00 C ATOM 264 N VAL 33 -3.557 34.903 3.848 1.00 0.00 N ATOM 265 CA VAL 33 -4.016 35.701 4.987 1.00 0.00 C ATOM 266 CB VAL 33 -3.315 35.279 6.290 1.00 0.00 C ATOM 267 CG1 VAL 33 -3.632 33.828 6.622 1.00 0.00 C ATOM 268 CG2 VAL 33 -1.812 35.487 6.179 1.00 0.00 C ATOM 269 O VAL 33 -2.947 37.513 3.863 1.00 0.00 O ATOM 270 C VAL 33 -3.773 37.169 4.689 1.00 0.00 C ATOM 271 N VAL 34 -4.533 38.025 5.357 1.00 0.00 N ATOM 272 CA VAL 34 -4.378 39.439 5.221 1.00 0.00 C ATOM 273 CB VAL 34 -5.656 40.097 4.667 1.00 0.00 C ATOM 274 CG1 VAL 34 -5.494 41.607 4.602 1.00 0.00 C ATOM 275 CG2 VAL 34 -5.994 39.533 3.296 1.00 0.00 C ATOM 276 O VAL 34 -4.495 39.481 7.595 1.00 0.00 O ATOM 277 C VAL 34 -4.006 39.989 6.599 1.00 0.00 C ATOM 278 N HIS 35 -3.088 40.972 6.624 1.00 0.00 N ATOM 279 CA HIS 35 -2.627 41.576 7.864 1.00 0.00 C ATOM 280 CB HIS 35 -1.648 40.644 8.582 1.00 0.00 C ATOM 281 CG HIS 35 -0.392 40.378 7.813 1.00 0.00 C ATOM 282 CD2 HIS 35 0.136 40.777 6.515 1.00 0.00 C ATOM 283 ND1 HIS 35 0.623 39.583 8.298 1.00 0.00 N ATOM 284 CE1 HIS 35 1.612 39.533 7.388 1.00 0.00 C ATOM 285 NE2 HIS 35 1.327 40.247 6.316 1.00 0.00 N ATOM 286 O HIS 35 -1.618 43.314 6.530 1.00 0.00 O ATOM 287 C HIS 35 -1.968 42.918 7.657 1.00 0.00 C ATOM 291 N PRO 38 4.173 44.762 9.945 1.00 0.00 N ATOM 292 CA PRO 38 5.321 45.339 10.649 1.00 0.00 C ATOM 293 CB PRO 38 6.428 44.298 10.464 1.00 0.00 C ATOM 294 CG PRO 38 5.701 43.027 10.174 1.00 0.00 C ATOM 295 CD PRO 38 4.478 43.416 9.392 1.00 0.00 C ATOM 296 O PRO 38 5.242 46.954 8.871 1.00 0.00 O ATOM 297 C PRO 38 5.661 46.678 10.001 1.00 0.00 C ATOM 298 N PRO 39 6.440 47.503 10.688 1.00 0.00 N ATOM 299 CA PRO 39 6.724 48.856 10.222 1.00 0.00 C ATOM 300 CB PRO 39 7.676 49.419 11.279 1.00 0.00 C ATOM 301 CG PRO 39 7.363 48.644 12.514 1.00 0.00 C ATOM 302 CD PRO 39 7.039 47.248 12.059 1.00 0.00 C ATOM 303 O PRO 39 7.239 49.931 8.149 1.00 0.00 O ATOM 304 C PRO 39 7.379 48.943 8.839 1.00 0.00 C ATOM 305 N SER 40 8.106 47.894 8.461 1.00 0.00 N ATOM 306 CA SER 40 8.799 47.890 7.186 1.00 0.00 C ATOM 307 CB SER 40 9.813 46.746 7.132 1.00 0.00 C ATOM 308 OG SER 40 9.163 45.486 7.132 1.00 0.00 O ATOM 309 O SER 40 8.149 47.962 4.902 1.00 0.00 O ATOM 310 C SER 40 7.788 47.771 6.052 1.00 0.00 C ATOM 314 N ALA 58 6.538 47.430 6.361 1.00 0.00 N ATOM 315 CA ALA 58 5.595 47.060 5.337 1.00 0.00 C ATOM 316 CB ALA 58 5.407 45.551 5.309 1.00 0.00 C ATOM 317 O ALA 58 4.070 48.712 6.262 1.00 0.00 O ATOM 318 C ALA 58 4.217 47.730 5.500 1.00 0.00 C ATOM 319 N ILE 59 3.262 47.263 4.695 1.00 0.00 N ATOM 320 CA ILE 59 1.928 47.821 4.632 1.00 0.00 C ATOM 321 CB ILE 59 1.738 48.690 3.374 1.00 0.00 C ATOM 322 CG1 ILE 59 1.902 47.844 2.111 1.00 0.00 C ATOM 323 CG2 ILE 59 2.696 49.872 3.394 1.00 0.00 C ATOM 324 CD1 ILE 59 1.533 48.571 0.837 1.00 0.00 C ATOM 325 O ILE 59 1.311 45.515 4.536 1.00 0.00 O ATOM 326 C ILE 59 0.935 46.691 4.669 1.00 0.00 C ATOM 327 N VAL 60 -0.338 47.043 4.809 1.00 0.00 N ATOM 328 CA VAL 60 -1.400 46.049 4.723 1.00 0.00 C ATOM 329 CB VAL 60 -2.793 46.707 4.761 1.00 0.00 C ATOM 330 CG1 VAL 60 -3.879 45.669 4.516 1.00 0.00 C ATOM 331 CG2 VAL 60 -3.013 47.413 6.089 1.00 0.00 C ATOM 332 O VAL 60 -1.088 45.791 2.315 1.00 0.00 O ATOM 333 C VAL 60 -1.197 45.236 3.429 1.00 0.00 C ATOM 334 N LYS 61 -1.184 43.924 3.591 1.00 0.00 N ATOM 335 CA LYS 61 -0.784 43.021 2.528 1.00 0.00 C ATOM 336 CB LYS 61 0.738 42.879 2.489 1.00 0.00 C ATOM 337 CG LYS 61 1.334 42.249 3.737 1.00 0.00 C ATOM 338 CD LYS 61 2.850 42.161 3.642 1.00 0.00 C ATOM 339 CE LYS 61 3.442 41.496 4.873 1.00 0.00 C ATOM 340 NZ LYS 61 4.926 41.393 4.789 1.00 0.00 N ATOM 341 O LYS 61 -1.850 41.253 3.770 1.00 0.00 O ATOM 342 C LYS 61 -1.421 41.653 2.678 1.00 0.00 C ATOM 343 N LYS 62 -1.394 40.903 1.576 1.00 0.00 N ATOM 344 CA LYS 62 -1.857 39.529 1.555 1.00 0.00 C ATOM 345 CB LYS 62 -2.945 39.347 0.495 1.00 0.00 C ATOM 346 CG LYS 62 -4.219 40.126 0.774 1.00 0.00 C ATOM 347 CD LYS 62 -5.263 39.884 -0.304 1.00 0.00 C ATOM 348 CE LYS 62 -6.518 40.703 -0.054 1.00 0.00 C ATOM 349 NZ LYS 62 -7.532 40.510 -1.126 1.00 0.00 N ATOM 350 O LYS 62 0.067 38.805 0.307 1.00 0.00 O ATOM 351 C LYS 62 -0.653 38.614 1.289 1.00 0.00 C ATOM 352 N GLU 63 -0.446 37.620 2.131 1.00 0.00 N ATOM 353 CA GLU 63 0.653 36.649 1.973 1.00 0.00 C ATOM 354 CB GLU 63 1.844 37.037 2.850 1.00 0.00 C ATOM 355 CG GLU 63 2.470 38.374 2.487 1.00 0.00 C ATOM 356 CD GLU 63 3.667 38.710 3.354 1.00 0.00 C ATOM 357 OE1 GLU 63 3.704 38.263 4.519 1.00 0.00 O ATOM 358 OE2 GLU 63 4.573 39.421 2.867 1.00 0.00 O ATOM 359 O GLU 63 -0.846 35.011 2.952 1.00 0.00 O ATOM 360 C GLU 63 0.201 35.222 2.314 1.00 0.00 C ATOM 361 N LEU 64 0.990 34.227 1.904 1.00 0.00 N ATOM 362 CA LEU 64 0.579 32.881 2.260 1.00 0.00 C ATOM 363 CB LEU 64 1.388 31.849 1.473 1.00 0.00 C ATOM 364 CG LEU 64 1.012 30.382 1.693 1.00 0.00 C ATOM 365 CD1 LEU 64 -0.388 30.101 1.171 1.00 0.00 C ATOM 366 CD2 LEU 64 2.020 29.461 1.024 1.00 0.00 C ATOM 367 O LEU 64 1.672 33.230 4.340 1.00 0.00 O ATOM 368 C LEU 64 0.737 32.657 3.735 1.00 0.00 C ATOM 369 N LEU 65 -0.101 31.786 4.304 1.00 0.00 N ATOM 370 CA LEU 65 0.081 31.346 5.679 1.00 0.00 C ATOM 371 CB LEU 65 -1.083 30.454 6.116 1.00 0.00 C ATOM 372 CG LEU 65 -0.993 29.861 7.523 1.00 0.00 C ATOM 373 CD1 LEU 65 -0.723 30.951 8.549 1.00 0.00 C ATOM 374 CD2 LEU 65 -2.269 29.109 7.872 1.00 0.00 C ATOM 375 O LEU 65 2.123 30.751 6.813 1.00 0.00 O ATOM 376 C LEU 65 1.413 30.603 5.821 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 318 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 53.17 78.6 56 29.0 193 ARMSMC SECONDARY STRUCTURE . . 43.58 81.1 37 34.3 108 ARMSMC SURFACE . . . . . . . . 81.12 52.2 23 19.0 121 ARMSMC BURIED . . . . . . . . 14.51 97.0 33 45.8 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.12 69.2 26 31.0 84 ARMSSC1 RELIABLE SIDE CHAINS . 64.55 69.6 23 30.7 75 ARMSSC1 SECONDARY STRUCTURE . . 82.61 64.7 17 34.0 50 ARMSSC1 SURFACE . . . . . . . . 80.62 58.3 12 21.8 55 ARMSSC1 BURIED . . . . . . . . 59.67 78.6 14 48.3 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.63 82.6 23 38.3 60 ARMSSC2 RELIABLE SIDE CHAINS . 55.43 85.0 20 43.5 46 ARMSSC2 SECONDARY STRUCTURE . . 61.08 85.7 14 37.8 37 ARMSSC2 SURFACE . . . . . . . . 45.17 91.7 12 29.3 41 ARMSSC2 BURIED . . . . . . . . 70.44 72.7 11 57.9 19 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 25.12 60.0 5 25.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 25.12 60.0 5 27.8 18 ARMSSC3 SECONDARY STRUCTURE . . 32.03 33.3 3 25.0 12 ARMSSC3 SURFACE . . . . . . . . 17.74 75.0 4 25.0 16 ARMSSC3 BURIED . . . . . . . . 43.56 0.0 1 25.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.89 33.3 3 42.9 7 ARMSSC4 RELIABLE SIDE CHAINS . 91.89 33.3 3 42.9 7 ARMSSC4 SECONDARY STRUCTURE . . 61.78 50.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 91.89 33.3 3 50.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.78 (Number of atoms: 38) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.78 38 38.4 99 CRMSCA CRN = ALL/NP . . . . . 0.0469 CRMSCA SECONDARY STRUCTURE . . 1.41 25 46.3 54 CRMSCA SURFACE . . . . . . . . 2.12 18 28.6 63 CRMSCA BURIED . . . . . . . . 1.41 20 55.6 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.92 187 38.2 489 CRMSMC SECONDARY STRUCTURE . . 1.54 124 46.1 269 CRMSMC SURFACE . . . . . . . . 2.34 89 28.6 311 CRMSMC BURIED . . . . . . . . 1.45 98 55.1 178 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.78 166 39.8 417 CRMSSC RELIABLE SIDE CHAINS . 5.09 144 41.0 351 CRMSSC SECONDARY STRUCTURE . . 4.88 124 49.2 252 CRMSSC SURFACE . . . . . . . . 6.23 90 32.0 281 CRMSSC BURIED . . . . . . . . 1.97 76 55.9 136 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.66 318 39.1 813 CRMSALL SECONDARY STRUCTURE . . 3.74 224 47.9 468 CRMSALL SURFACE . . . . . . . . 4.85 162 30.4 533 CRMSALL BURIED . . . . . . . . 1.68 156 55.7 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.351 1.000 0.500 38 38.4 99 ERRCA SECONDARY STRUCTURE . . 1.111 1.000 0.500 25 46.3 54 ERRCA SURFACE . . . . . . . . 1.763 1.000 0.500 18 28.6 63 ERRCA BURIED . . . . . . . . 0.980 1.000 0.500 20 55.6 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.432 1.000 0.500 187 38.2 489 ERRMC SECONDARY STRUCTURE . . 1.183 1.000 0.500 124 46.1 269 ERRMC SURFACE . . . . . . . . 1.872 1.000 0.500 89 28.6 311 ERRMC BURIED . . . . . . . . 1.032 1.000 0.500 98 55.1 178 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.247 1.000 0.500 166 39.8 417 ERRSC RELIABLE SIDE CHAINS . 3.527 1.000 0.500 144 41.0 351 ERRSC SECONDARY STRUCTURE . . 3.224 1.000 0.500 124 49.2 252 ERRSC SURFACE . . . . . . . . 4.759 1.000 0.500 90 32.0 281 ERRSC BURIED . . . . . . . . 1.455 1.000 0.500 76 55.9 136 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.332 1.000 0.500 318 39.1 813 ERRALL SECONDARY STRUCTURE . . 2.274 1.000 0.500 224 47.9 468 ERRALL SURFACE . . . . . . . . 3.408 1.000 0.500 162 30.4 533 ERRALL BURIED . . . . . . . . 1.214 1.000 0.500 156 55.7 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 21 29 33 38 38 38 99 DISTCA CA (P) 21.21 29.29 33.33 38.38 38.38 99 DISTCA CA (RMS) 0.64 0.91 1.20 1.78 1.78 DISTCA ALL (N) 129 209 246 277 303 318 813 DISTALL ALL (P) 15.87 25.71 30.26 34.07 37.27 813 DISTALL ALL (RMS) 0.62 0.99 1.31 1.76 2.61 DISTALL END of the results output