####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 34 ( 282), selected 32 , name T0630TS171_1-D1 # Molecule2: number of CA atoms 99 ( 813), selected 32 , name T0630-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0630TS171_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 7 - 38 2.06 2.06 LCS_AVERAGE: 32.32 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 7 - 37 1.93 2.10 LONGEST_CONTINUOUS_SEGMENT: 31 8 - 38 1.98 2.08 LCS_AVERAGE: 31.31 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 22 - 37 0.72 2.22 LCS_AVERAGE: 11.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 32 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 7 E 7 5 31 32 3 4 12 22 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT P 8 P 8 9 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT K 9 K 9 9 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT P 10 P 10 9 31 32 10 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT G 11 G 11 9 31 32 4 16 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT D 12 D 12 9 31 32 13 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT L 13 L 13 9 31 32 4 18 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT I 14 I 14 9 31 32 5 18 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT E 15 E 15 9 31 32 5 16 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT I 16 I 16 9 31 32 4 18 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT F 17 F 17 9 31 32 3 5 19 25 26 28 28 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT R 18 R 18 4 31 32 3 4 5 24 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT P 19 P 19 4 31 32 3 11 16 19 24 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT F 20 F 20 4 31 32 3 4 4 13 20 27 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT Y 21 Y 21 3 31 32 3 3 4 6 8 24 29 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT R 22 R 22 16 31 32 7 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT H 23 H 23 16 31 32 11 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT W 24 W 24 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT A 25 A 25 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT I 26 I 26 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT Y 27 Y 27 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT V 28 V 28 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT G 29 G 29 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT D 30 D 30 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT G 31 G 31 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT Y 32 Y 32 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT V 33 V 33 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT V 34 V 34 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT H 35 H 35 16 31 32 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT L 36 L 36 16 31 32 3 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT A 37 A 37 16 31 32 3 13 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT P 38 P 38 5 31 32 3 3 6 13 21 27 30 31 32 32 32 32 32 32 32 32 32 32 32 32 LCS_AVERAGE LCS_A: 25.12 ( 11.71 31.31 32.32 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 19 24 25 26 28 30 31 32 32 32 32 32 32 32 32 32 32 32 32 GDT PERCENT_AT 14.14 19.19 24.24 25.25 26.26 28.28 30.30 31.31 32.32 32.32 32.32 32.32 32.32 32.32 32.32 32.32 32.32 32.32 32.32 32.32 GDT RMS_LOCAL 0.30 0.58 0.80 0.90 1.03 1.31 1.81 1.93 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 GDT RMS_ALL_AT 2.20 2.23 2.37 2.31 2.22 2.32 2.07 2.07 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 # Checking swapping # possible swapping detected: E 7 E 7 # possible swapping detected: F 17 F 17 # possible swapping detected: F 20 F 20 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 7 E 7 3.342 0 0.660 1.175 11.759 63.095 30.741 LGA P 8 P 8 0.701 0 0.116 0.254 2.495 90.833 84.490 LGA K 9 K 9 0.688 0 0.110 1.204 6.544 90.476 69.841 LGA P 10 P 10 1.060 0 0.689 0.648 3.459 73.571 76.939 LGA G 11 G 11 1.344 0 0.077 0.077 1.419 85.952 85.952 LGA D 12 D 12 0.890 0 0.080 0.219 1.095 92.857 90.536 LGA L 13 L 13 1.759 0 0.097 0.945 4.140 72.857 66.369 LGA I 14 I 14 1.797 0 0.108 1.437 5.476 72.857 64.167 LGA E 15 E 15 2.623 0 0.100 0.774 3.590 57.262 59.206 LGA I 16 I 16 2.649 0 0.091 1.104 4.563 53.571 50.595 LGA F 17 F 17 4.663 0 0.488 1.044 13.528 45.476 18.485 LGA R 18 R 18 2.336 0 0.139 1.394 8.434 69.048 37.792 LGA P 19 P 19 3.324 0 0.643 0.625 6.377 40.357 39.048 LGA F 20 F 20 3.605 0 0.696 1.305 8.397 42.500 29.307 LGA Y 21 Y 21 4.079 0 0.242 0.474 13.494 47.143 18.611 LGA R 22 R 22 2.472 0 0.612 1.409 15.614 70.833 29.091 LGA H 23 H 23 1.302 0 0.027 0.291 1.603 79.286 80.571 LGA W 24 W 24 0.814 0 0.086 0.600 3.219 90.476 80.170 LGA A 25 A 25 0.673 0 0.066 0.096 0.960 90.476 90.476 LGA I 26 I 26 0.696 0 0.034 0.100 0.738 92.857 91.667 LGA Y 27 Y 27 0.429 0 0.091 0.235 0.577 97.619 97.619 LGA V 28 V 28 0.241 0 0.174 0.579 2.518 90.595 83.265 LGA G 29 G 29 0.601 0 0.085 0.085 0.601 97.619 97.619 LGA D 30 D 30 0.524 0 0.049 1.228 4.304 92.857 78.571 LGA G 31 G 31 0.733 0 0.087 0.087 0.733 90.476 90.476 LGA Y 32 Y 32 0.655 0 0.076 1.310 6.767 92.857 66.706 LGA V 33 V 33 0.609 0 0.060 1.050 3.031 90.476 82.177 LGA V 34 V 34 0.939 0 0.048 1.228 3.388 90.476 80.884 LGA H 35 H 35 0.890 0 0.076 1.050 2.393 90.476 80.000 LGA L 36 L 36 1.290 0 0.094 1.060 2.246 83.690 81.726 LGA A 37 A 37 1.264 0 0.142 0.203 1.880 81.548 79.810 LGA P 38 P 38 4.116 0 0.139 0.181 6.674 45.119 34.626 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 32 128 128 100.00 268 268 100.00 99 SUMMARY(RMSD_GDC): 2.059 1.975 4.123 24.905 21.692 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 34 99 4.0 31 1.93 27.020 29.120 1.526 LGA_LOCAL RMSD: 1.932 Number of atoms: 31 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.073 Number of assigned atoms: 32 Std_ASGN_ATOMS RMSD: 2.059 Standard rmsd on all 32 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.525732 * X + 0.760208 * Y + 0.381694 * Z + 5.880819 Y_new = 0.148691 * X + -0.359674 * Y + 0.921154 * Z + 30.992826 Z_new = 0.837554 * X + 0.541035 * Y + 0.076056 * Z + -37.360527 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.865964 -0.992791 1.431136 [DEG: 164.2077 -56.8827 81.9981 ] ZXZ: 2.748765 1.494667 0.997259 [DEG: 157.4926 85.6381 57.1388 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0630TS171_1-D1 REMARK 2: T0630-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0630TS171_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 34 99 4.0 31 1.93 29.120 2.06 REMARK ---------------------------------------------------------- MOLECULE T0630TS171_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0630 REMARK MODEL 1 REMARK PARENT 2hbw_A ATOM 39 N GLU 7 -9.125 24.063 10.454 1.00 0.00 N ATOM 40 CA GLU 7 -10.451 24.579 10.649 1.00 0.00 C ATOM 41 CB GLU 7 -10.919 24.527 12.110 1.00 0.00 C ATOM 42 CG GLU 7 -11.247 23.102 12.564 1.00 0.00 C ATOM 43 CD GLU 7 -11.946 23.185 13.913 1.00 0.00 C ATOM 44 OE1 GLU 7 -11.937 24.292 14.516 1.00 0.00 O ATOM 45 OE2 GLU 7 -12.503 22.144 14.354 1.00 0.00 O ATOM 46 C GLU 7 -10.662 25.979 10.128 1.00 0.00 C ATOM 47 O GLU 7 -11.807 26.302 9.819 1.00 0.00 O ATOM 48 N PRO 8 -9.699 26.853 9.989 1.00 0.00 N ATOM 49 CA PRO 8 -10.050 28.198 9.649 1.00 0.00 C ATOM 50 CD PRO 8 -8.532 26.860 10.843 1.00 0.00 C ATOM 51 CB PRO 8 -8.769 29.017 9.773 1.00 0.00 C ATOM 52 CG PRO 8 -8.037 28.312 10.920 1.00 0.00 C ATOM 53 C PRO 8 -10.808 28.464 8.402 1.00 0.00 C ATOM 54 O PRO 8 -10.699 27.722 7.424 1.00 0.00 O ATOM 55 N LYS 9 -11.620 29.536 8.489 1.00 0.00 N ATOM 56 CA LYS 9 -12.427 30.078 7.442 1.00 0.00 C ATOM 57 CB LYS 9 -13.919 30.186 7.795 1.00 0.00 C ATOM 58 CG LYS 9 -14.583 28.830 8.042 1.00 0.00 C ATOM 59 CD LYS 9 -16.015 28.918 8.581 1.00 0.00 C ATOM 60 CE LYS 9 -16.125 29.513 9.985 1.00 0.00 C ATOM 61 NZ LYS 9 -16.073 30.991 9.917 1.00 0.00 N ATOM 62 C LYS 9 -11.921 31.476 7.240 1.00 0.00 C ATOM 63 O LYS 9 -11.023 31.920 7.951 1.00 0.00 O ATOM 64 N PRO 10 -12.480 32.183 6.294 1.00 0.00 N ATOM 65 CA PRO 10 -11.991 33.502 5.958 1.00 0.00 C ATOM 66 CD PRO 10 -13.039 31.510 5.130 1.00 0.00 C ATOM 67 CB PRO 10 -12.653 33.859 4.630 1.00 0.00 C ATOM 68 CG PRO 10 -12.870 32.492 3.958 1.00 0.00 C ATOM 69 C PRO 10 -12.116 34.576 6.999 1.00 0.00 C ATOM 70 O PRO 10 -11.577 35.662 6.816 1.00 0.00 O ATOM 71 N GLY 11 -12.931 34.386 8.031 1.00 0.00 N ATOM 72 CA GLY 11 -13.043 35.366 9.075 1.00 0.00 C ATOM 73 C GLY 11 -11.925 35.300 10.064 1.00 0.00 C ATOM 74 O GLY 11 -11.554 36.307 10.668 1.00 0.00 O ATOM 75 N ASP 12 -11.400 34.080 10.277 1.00 0.00 N ATOM 76 CA ASP 12 -10.538 33.750 11.377 1.00 0.00 C ATOM 77 CB ASP 12 -10.267 32.242 11.470 1.00 0.00 C ATOM 78 CG ASP 12 -11.598 31.556 11.741 1.00 0.00 C ATOM 79 OD1 ASP 12 -12.578 32.277 12.071 1.00 0.00 O ATOM 80 OD2 ASP 12 -11.654 30.305 11.616 1.00 0.00 O ATOM 81 C ASP 12 -9.215 34.441 11.325 1.00 0.00 C ATOM 82 O ASP 12 -8.768 34.925 10.286 1.00 0.00 O ATOM 83 N LEU 13 -8.572 34.512 12.512 1.00 0.00 N ATOM 84 CA LEU 13 -7.278 35.108 12.653 1.00 0.00 C ATOM 85 CB LEU 13 -7.167 36.107 13.820 1.00 0.00 C ATOM 86 CG LEU 13 -8.029 37.368 13.644 1.00 0.00 C ATOM 87 CD1 LEU 13 -7.579 38.178 12.418 1.00 0.00 C ATOM 88 CD2 LEU 13 -9.527 37.030 13.632 1.00 0.00 C ATOM 89 C LEU 13 -6.302 34.012 12.927 1.00 0.00 C ATOM 90 O LEU 13 -6.647 32.982 13.502 1.00 0.00 O ATOM 91 N ILE 14 -5.044 34.210 12.486 1.00 0.00 N ATOM 92 CA ILE 14 -4.007 33.253 12.726 1.00 0.00 C ATOM 93 CB ILE 14 -3.326 32.759 11.482 1.00 0.00 C ATOM 94 CG2 ILE 14 -4.362 32.023 10.617 1.00 0.00 C ATOM 95 CG1 ILE 14 -2.623 33.915 10.754 1.00 0.00 C ATOM 96 CD1 ILE 14 -1.677 33.445 9.650 1.00 0.00 C ATOM 97 C ILE 14 -2.970 33.960 13.542 1.00 0.00 C ATOM 98 O ILE 14 -2.717 35.145 13.335 1.00 0.00 O ATOM 99 N GLU 15 -2.362 33.257 14.519 1.00 0.00 N ATOM 100 CA GLU 15 -1.377 33.889 15.354 1.00 0.00 C ATOM 101 CB GLU 15 -1.610 33.712 16.865 1.00 0.00 C ATOM 102 CG GLU 15 -2.796 34.471 17.455 1.00 0.00 C ATOM 103 CD GLU 15 -2.819 34.144 18.945 1.00 0.00 C ATOM 104 OE1 GLU 15 -2.029 33.255 19.364 1.00 0.00 O ATOM 105 OE2 GLU 15 -3.619 34.778 19.681 1.00 0.00 O ATOM 106 C GLU 15 -0.050 33.243 15.127 1.00 0.00 C ATOM 107 O GLU 15 0.037 32.023 14.999 1.00 0.00 O ATOM 108 N ILE 16 1.024 34.055 15.052 1.00 0.00 N ATOM 109 CA ILE 16 2.335 33.484 14.934 1.00 0.00 C ATOM 110 CB ILE 16 2.828 33.388 13.523 1.00 0.00 C ATOM 111 CG2 ILE 16 3.045 34.818 13.006 1.00 0.00 C ATOM 112 CG1 ILE 16 4.094 32.516 13.467 1.00 0.00 C ATOM 113 CD1 ILE 16 4.513 32.128 12.050 1.00 0.00 C ATOM 114 C ILE 16 3.305 34.364 15.655 1.00 0.00 C ATOM 115 O ILE 16 3.145 35.584 15.661 1.00 0.00 O ATOM 116 N PHE 17 4.318 33.753 16.312 1.00 0.00 N ATOM 117 CA PHE 17 5.374 34.512 16.915 1.00 0.00 C ATOM 118 CB PHE 17 4.933 35.751 17.714 1.00 0.00 C ATOM 119 CG PHE 17 6.033 36.760 17.586 1.00 0.00 C ATOM 120 CD1 PHE 17 6.080 37.559 16.467 1.00 0.00 C ATOM 121 CD2 PHE 17 7.006 36.929 18.537 1.00 0.00 C ATOM 122 CE1 PHE 17 7.065 38.504 16.293 1.00 0.00 C ATOM 123 CE2 PHE 17 7.996 37.871 18.368 1.00 0.00 C ATOM 124 CZ PHE 17 8.035 38.665 17.249 1.00 0.00 C ATOM 125 C PHE 17 6.051 33.586 17.875 1.00 0.00 C ATOM 126 O PHE 17 6.096 32.375 17.677 1.00 0.00 O ATOM 127 N ARG 18 6.609 34.173 18.945 1.00 0.00 N ATOM 128 CA ARG 18 7.276 33.506 20.018 1.00 0.00 C ATOM 129 CB ARG 18 8.062 34.489 20.902 1.00 0.00 C ATOM 130 CG ARG 18 9.148 35.251 20.143 1.00 0.00 C ATOM 131 CD ARG 18 10.063 34.360 19.301 1.00 0.00 C ATOM 132 NE ARG 18 9.644 34.497 17.879 1.00 0.00 N ATOM 133 CZ ARG 18 10.416 33.953 16.891 1.00 0.00 C ATOM 134 NH1 ARG 18 11.534 33.235 17.203 1.00 0.00 N ATOM 135 NH2 ARG 18 10.072 34.124 15.583 1.00 0.00 N ATOM 136 C ARG 18 6.199 32.877 20.843 1.00 0.00 C ATOM 137 O ARG 18 5.061 32.771 20.387 1.00 0.00 O ATOM 138 N PRO 19 6.497 32.418 22.029 1.00 0.00 N ATOM 139 CA PRO 19 5.462 31.834 22.826 1.00 0.00 C ATOM 140 CD PRO 19 7.798 31.850 22.351 1.00 0.00 C ATOM 141 CB PRO 19 6.160 31.300 24.072 1.00 0.00 C ATOM 142 CG PRO 19 7.555 30.909 23.547 1.00 0.00 C ATOM 143 C PRO 19 4.394 32.850 23.054 1.00 0.00 C ATOM 144 O PRO 19 3.277 32.467 23.400 1.00 0.00 O ATOM 145 N PHE 20 4.720 34.147 22.900 1.00 0.00 N ATOM 146 CA PHE 20 3.697 35.143 22.979 1.00 0.00 C ATOM 147 CB PHE 20 4.161 36.481 23.583 1.00 0.00 C ATOM 148 CG PHE 20 5.182 37.120 22.709 1.00 0.00 C ATOM 149 CD1 PHE 20 6.492 36.703 22.751 1.00 0.00 C ATOM 150 CD2 PHE 20 4.824 38.144 21.866 1.00 0.00 C ATOM 151 CE1 PHE 20 7.442 37.302 21.958 1.00 0.00 C ATOM 152 CE2 PHE 20 5.765 38.751 21.070 1.00 0.00 C ATOM 153 CZ PHE 20 7.074 38.328 21.121 1.00 0.00 C ATOM 154 C PHE 20 3.259 35.382 21.571 1.00 0.00 C ATOM 155 O PHE 20 4.017 35.136 20.633 1.00 0.00 O ATOM 156 N TYR 21 2.007 35.838 21.375 1.00 0.00 N ATOM 157 CA TYR 21 1.528 36.042 20.037 1.00 0.00 C ATOM 158 CB TYR 21 0.082 35.532 19.850 1.00 0.00 C ATOM 159 CG TYR 21 -0.759 36.016 20.987 1.00 0.00 C ATOM 160 CD1 TYR 21 -0.707 35.353 22.191 1.00 0.00 C ATOM 161 CD2 TYR 21 -1.584 37.113 20.876 1.00 0.00 C ATOM 162 CE1 TYR 21 -1.461 35.767 23.264 1.00 0.00 C ATOM 163 CE2 TYR 21 -2.342 37.535 21.947 1.00 0.00 C ATOM 164 CZ TYR 21 -2.282 36.862 23.143 1.00 0.00 C ATOM 165 OH TYR 21 -3.057 37.288 24.243 1.00 0.00 O ATOM 166 C TYR 21 1.618 37.496 19.711 1.00 0.00 C ATOM 167 O TYR 21 0.729 38.287 20.018 1.00 0.00 O ATOM 168 N ARG 22 2.765 37.887 19.126 1.00 0.00 N ATOM 169 CA ARG 22 2.996 39.247 18.747 1.00 0.00 C ATOM 170 CB ARG 22 4.477 39.568 18.511 1.00 0.00 C ATOM 171 CG ARG 22 4.780 41.062 18.646 1.00 0.00 C ATOM 172 CD ARG 22 6.171 41.467 18.160 1.00 0.00 C ATOM 173 NE ARG 22 5.993 42.170 16.857 1.00 0.00 N ATOM 174 CZ ARG 22 7.047 42.336 16.007 1.00 0.00 C ATOM 175 NH1 ARG 22 8.269 41.819 16.328 1.00 0.00 N ATOM 176 NH2 ARG 22 6.875 43.019 14.837 1.00 0.00 N ATOM 177 C ARG 22 2.241 39.606 17.500 1.00 0.00 C ATOM 178 O ARG 22 1.712 40.710 17.391 1.00 0.00 O ATOM 179 N HIS 23 2.158 38.673 16.525 1.00 0.00 N ATOM 180 CA HIS 23 1.621 39.042 15.242 1.00 0.00 C ATOM 181 ND1 HIS 23 2.500 40.728 12.560 1.00 0.00 N ATOM 182 CG HIS 23 2.276 39.388 12.790 1.00 0.00 C ATOM 183 CB HIS 23 2.592 38.708 14.090 1.00 0.00 C ATOM 184 NE2 HIS 23 1.667 39.894 10.675 1.00 0.00 N ATOM 185 CD2 HIS 23 1.765 38.893 11.626 1.00 0.00 C ATOM 186 CE1 HIS 23 2.120 40.977 11.281 1.00 0.00 C ATOM 187 C HIS 23 0.336 38.314 14.994 1.00 0.00 C ATOM 188 O HIS 23 0.092 37.246 15.551 1.00 0.00 O ATOM 189 N TRP 24 -0.535 38.912 14.149 1.00 0.00 N ATOM 190 CA TRP 24 -1.794 38.310 13.815 1.00 0.00 C ATOM 191 CB TRP 24 -3.011 39.010 14.444 1.00 0.00 C ATOM 192 CG TRP 24 -3.083 38.965 15.953 1.00 0.00 C ATOM 193 CD2 TRP 24 -4.241 39.366 16.706 1.00 0.00 C ATOM 194 CD1 TRP 24 -2.143 38.580 16.867 1.00 0.00 C ATOM 195 NE1 TRP 24 -2.642 38.724 18.141 1.00 0.00 N ATOM 196 CE2 TRP 24 -3.931 39.206 18.056 1.00 0.00 C ATOM 197 CE3 TRP 24 -5.459 39.835 16.301 1.00 0.00 C ATOM 198 CZ2 TRP 24 -4.840 39.517 19.028 1.00 0.00 C ATOM 199 CZ3 TRP 24 -6.375 40.141 17.284 1.00 0.00 C ATOM 200 CH2 TRP 24 -6.070 39.986 18.620 1.00 0.00 C ATOM 201 C TRP 24 -1.977 38.478 12.341 1.00 0.00 C ATOM 202 O TRP 24 -1.375 39.354 11.724 1.00 0.00 O ATOM 203 N ALA 25 -2.816 37.623 11.731 1.00 0.00 N ATOM 204 CA ALA 25 -3.071 37.743 10.330 1.00 0.00 C ATOM 205 CB ALA 25 -2.167 36.842 9.472 1.00 0.00 C ATOM 206 C ALA 25 -4.488 37.317 10.131 1.00 0.00 C ATOM 207 O ALA 25 -5.065 36.640 10.981 1.00 0.00 O ATOM 208 N ILE 26 -5.106 37.723 9.006 1.00 0.00 N ATOM 209 CA ILE 26 -6.471 37.327 8.809 1.00 0.00 C ATOM 210 CB ILE 26 -7.394 38.481 8.513 1.00 0.00 C ATOM 211 CG2 ILE 26 -7.029 39.101 7.156 1.00 0.00 C ATOM 212 CG1 ILE 26 -8.859 38.032 8.635 1.00 0.00 C ATOM 213 CD1 ILE 26 -9.847 39.194 8.650 1.00 0.00 C ATOM 214 C ILE 26 -6.510 36.352 7.678 1.00 0.00 C ATOM 215 O ILE 26 -6.028 36.617 6.579 1.00 0.00 O ATOM 216 N TYR 27 -7.105 35.176 7.944 1.00 0.00 N ATOM 217 CA TYR 27 -7.151 34.095 7.002 1.00 0.00 C ATOM 218 CB TYR 27 -7.555 32.796 7.719 1.00 0.00 C ATOM 219 CG TYR 27 -7.538 31.632 6.796 1.00 0.00 C ATOM 220 CD1 TYR 27 -6.366 30.954 6.552 1.00 0.00 C ATOM 221 CD2 TYR 27 -8.700 31.210 6.192 1.00 0.00 C ATOM 222 CE1 TYR 27 -6.353 29.869 5.711 1.00 0.00 C ATOM 223 CE2 TYR 27 -8.690 30.125 5.350 1.00 0.00 C ATOM 224 CZ TYR 27 -7.516 29.453 5.109 1.00 0.00 C ATOM 225 OH TYR 27 -7.502 28.338 4.245 1.00 0.00 O ATOM 226 C TYR 27 -8.168 34.412 5.939 1.00 0.00 C ATOM 227 O TYR 27 -9.343 34.618 6.239 1.00 0.00 O ATOM 228 N VAL 28 -7.700 34.523 4.668 1.00 0.00 N ATOM 229 CA VAL 28 -8.533 34.803 3.525 1.00 0.00 C ATOM 230 CB VAL 28 -7.785 35.396 2.363 1.00 0.00 C ATOM 231 CG1 VAL 28 -6.930 34.311 1.690 1.00 0.00 C ATOM 232 CG2 VAL 28 -8.813 36.044 1.420 1.00 0.00 C ATOM 233 C VAL 28 -9.258 33.590 3.022 1.00 0.00 C ATOM 234 O VAL 28 -10.417 33.674 2.617 1.00 0.00 O ATOM 235 N GLY 29 -8.573 32.425 3.009 1.00 0.00 N ATOM 236 CA GLY 29 -9.136 31.217 2.483 1.00 0.00 C ATOM 237 C GLY 29 -8.097 30.677 1.559 1.00 0.00 C ATOM 238 O GLY 29 -7.152 31.382 1.217 1.00 0.00 O ATOM 239 N ASP 30 -8.248 29.404 1.147 1.00 0.00 N ATOM 240 CA ASP 30 -7.345 28.729 0.258 1.00 0.00 C ATOM 241 CB ASP 30 -7.430 29.187 -1.224 1.00 0.00 C ATOM 242 CG ASP 30 -6.998 30.639 -1.421 1.00 0.00 C ATOM 243 OD1 ASP 30 -5.893 31.015 -0.948 1.00 0.00 O ATOM 244 OD2 ASP 30 -7.776 31.394 -2.068 1.00 0.00 O ATOM 245 C ASP 30 -5.943 28.810 0.783 1.00 0.00 C ATOM 246 O ASP 30 -4.981 28.849 0.017 1.00 0.00 O ATOM 247 N GLY 31 -5.799 28.818 2.125 1.00 0.00 N ATOM 248 CA GLY 31 -4.518 28.771 2.774 1.00 0.00 C ATOM 249 C GLY 31 -3.870 30.121 2.760 1.00 0.00 C ATOM 250 O GLY 31 -2.748 30.271 3.246 1.00 0.00 O ATOM 251 N TYR 32 -4.560 31.152 2.237 1.00 0.00 N ATOM 252 CA TYR 32 -3.940 32.441 2.118 1.00 0.00 C ATOM 253 CB TYR 32 -4.343 33.184 0.824 1.00 0.00 C ATOM 254 CG TYR 32 -3.396 34.321 0.619 1.00 0.00 C ATOM 255 CD1 TYR 32 -2.147 34.090 0.086 1.00 0.00 C ATOM 256 CD2 TYR 32 -3.750 35.610 0.940 1.00 0.00 C ATOM 257 CE1 TYR 32 -1.263 35.126 -0.115 1.00 0.00 C ATOM 258 CE2 TYR 32 -2.870 36.649 0.742 1.00 0.00 C ATOM 259 CZ TYR 32 -1.623 36.410 0.214 1.00 0.00 C ATOM 260 OH TYR 32 -0.718 37.473 0.007 1.00 0.00 O ATOM 261 C TYR 32 -4.340 33.283 3.294 1.00 0.00 C ATOM 262 O TYR 32 -5.483 33.227 3.748 1.00 0.00 O ATOM 263 N VAL 33 -3.373 34.038 3.861 1.00 0.00 N ATOM 264 CA VAL 33 -3.710 34.914 4.944 1.00 0.00 C ATOM 265 CB VAL 33 -3.222 34.442 6.280 1.00 0.00 C ATOM 266 CG1 VAL 33 -3.645 35.481 7.330 1.00 0.00 C ATOM 267 CG2 VAL 33 -3.772 33.032 6.546 1.00 0.00 C ATOM 268 C VAL 33 -3.044 36.224 4.659 1.00 0.00 C ATOM 269 O VAL 33 -1.956 36.270 4.083 1.00 0.00 O ATOM 270 N VAL 34 -3.699 37.338 5.043 1.00 0.00 N ATOM 271 CA VAL 34 -3.123 38.622 4.788 1.00 0.00 C ATOM 272 CB VAL 34 -4.036 39.547 4.039 1.00 0.00 C ATOM 273 CG1 VAL 34 -4.316 38.931 2.653 1.00 0.00 C ATOM 274 CG2 VAL 34 -5.289 39.805 4.887 1.00 0.00 C ATOM 275 C VAL 34 -2.825 39.249 6.109 1.00 0.00 C ATOM 276 O VAL 34 -3.628 39.190 7.043 1.00 0.00 O ATOM 277 N HIS 35 -1.633 39.857 6.223 1.00 0.00 N ATOM 278 CA HIS 35 -1.266 40.460 7.462 1.00 0.00 C ATOM 279 ND1 HIS 35 2.163 40.359 7.545 1.00 0.00 N ATOM 280 CG HIS 35 1.066 39.537 7.412 1.00 0.00 C ATOM 281 CB HIS 35 -0.192 39.665 8.217 1.00 0.00 C ATOM 282 NE2 HIS 35 2.651 38.905 5.936 1.00 0.00 N ATOM 283 CD2 HIS 35 1.381 38.655 6.426 1.00 0.00 C ATOM 284 CE1 HIS 35 3.081 39.936 6.639 1.00 0.00 C ATOM 285 C HIS 35 -0.690 41.789 7.150 1.00 0.00 C ATOM 286 O HIS 35 -0.131 42.003 6.075 1.00 0.00 O ATOM 287 N LEU 36 -0.842 42.730 8.095 1.00 0.00 N ATOM 288 CA LEU 36 -0.269 44.014 7.891 1.00 0.00 C ATOM 289 CB LEU 36 -1.115 45.173 8.468 1.00 0.00 C ATOM 290 CG LEU 36 -1.388 45.130 9.989 1.00 0.00 C ATOM 291 CD1 LEU 36 -0.137 45.454 10.823 1.00 0.00 C ATOM 292 CD2 LEU 36 -2.583 46.025 10.355 1.00 0.00 C ATOM 293 C LEU 36 1.050 43.968 8.572 1.00 0.00 C ATOM 294 O LEU 36 1.193 43.374 9.639 1.00 0.00 O ATOM 295 N ALA 37 2.075 44.541 7.926 1.00 0.00 N ATOM 296 CA ALA 37 3.348 44.597 8.563 1.00 0.00 C ATOM 297 CB ALA 37 4.511 44.194 7.639 1.00 0.00 C ATOM 298 C ALA 37 3.510 46.035 8.929 1.00 0.00 C ATOM 299 O ALA 37 3.268 46.922 8.112 1.00 0.00 O ATOM 300 N PRO 38 3.883 46.281 10.153 1.00 0.00 N ATOM 301 CA PRO 38 4.018 47.646 10.584 1.00 0.00 C ATOM 302 CD PRO 38 3.418 45.424 11.233 1.00 0.00 C ATOM 303 CB PRO 38 4.010 47.608 12.110 1.00 0.00 C ATOM 304 CG PRO 38 3.173 46.357 12.430 1.00 0.00 C ATOM 305 C PRO 38 5.220 48.304 9.998 1.00 0.00 C ATOM 306 O PRO 38 6.174 47.613 9.645 1.00 0.00 O ATOM 307 N PRO 39 5.166 49.602 9.871 1.00 0.00 N ATOM 308 CA PRO 39 6.277 50.341 9.345 1.00 0.00 C ATOM 309 CD PRO 39 3.896 50.267 9.618 1.00 0.00 C ATOM 310 CB PRO 39 5.750 51.746 9.070 1.00 0.00 C ATOM 311 CG PRO 39 4.250 51.522 8.800 1.00 0.00 C ATOM 312 C PRO 39 7.431 50.292 10.289 1.00 0.00 C ATOM 313 O PRO 39 8.562 50.503 9.853 1.00 0.00 O ATOM 314 N SER 40 7.167 50.045 11.587 1.00 0.00 N ATOM 315 CA SER 40 8.235 49.964 12.536 1.00 0.00 C ATOM 316 CB SER 40 7.916 50.638 13.881 1.00 0.00 C ATOM 317 OG SER 40 6.855 49.956 14.529 1.00 0.00 O ATOM 318 C SER 40 8.446 48.482 12.811 1.00 0.00 C ATOM 319 O SER 40 9.051 48.151 13.866 1.00 0.00 O ATOM 320 OXT SER 40 7.996 47.660 11.969 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 268 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 61.37 72.6 62 32.1 193 ARMSMC SECONDARY STRUCTURE . . 44.28 73.8 42 38.9 108 ARMSMC SURFACE . . . . . . . . 88.66 54.2 24 19.8 121 ARMSMC BURIED . . . . . . . . 34.35 84.2 38 52.8 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.50 48.1 27 32.1 84 ARMSSC1 RELIABLE SIDE CHAINS . 71.96 54.2 24 32.0 75 ARMSSC1 SECONDARY STRUCTURE . . 80.72 38.9 18 36.0 50 ARMSSC1 SURFACE . . . . . . . . 74.46 41.7 12 21.8 55 ARMSSC1 BURIED . . . . . . . . 78.09 53.3 15 51.7 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.48 62.5 24 40.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 59.00 70.0 20 43.5 46 ARMSSC2 SECONDARY STRUCTURE . . 77.00 53.3 15 40.5 37 ARMSSC2 SURFACE . . . . . . . . 62.94 66.7 12 29.3 41 ARMSSC2 BURIED . . . . . . . . 77.28 58.3 12 63.2 19 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.29 20.0 5 25.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 79.29 20.0 5 27.8 18 ARMSSC3 SECONDARY STRUCTURE . . 78.69 0.0 3 25.0 12 ARMSSC3 SURFACE . . . . . . . . 86.43 25.0 4 25.0 16 ARMSSC3 BURIED . . . . . . . . 39.47 0.0 1 25.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.68 33.3 3 42.9 7 ARMSSC4 RELIABLE SIDE CHAINS . 94.68 33.3 3 42.9 7 ARMSSC4 SECONDARY STRUCTURE . . 52.33 50.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 94.68 33.3 3 50.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.06 (Number of atoms: 32) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.06 32 32.3 99 CRMSCA CRN = ALL/NP . . . . . 0.0643 CRMSCA SECONDARY STRUCTURE . . 1.85 21 38.9 54 CRMSCA SURFACE . . . . . . . . 2.89 13 20.6 63 CRMSCA BURIED . . . . . . . . 1.20 19 52.8 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.24 157 32.1 489 CRMSMC SECONDARY STRUCTURE . . 1.93 104 38.7 269 CRMSMC SURFACE . . . . . . . . 3.15 64 20.6 311 CRMSMC BURIED . . . . . . . . 1.27 93 52.2 178 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.44 140 33.6 417 CRMSSC RELIABLE SIDE CHAINS . 5.77 122 34.8 351 CRMSSC SECONDARY STRUCTURE . . 5.49 103 40.9 252 CRMSSC SURFACE . . . . . . . . 7.60 67 23.8 281 CRMSSC BURIED . . . . . . . . 1.94 73 53.7 136 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.16 268 33.0 813 CRMSALL SECONDARY STRUCTURE . . 4.22 187 40.0 468 CRMSALL SURFACE . . . . . . . . 5.98 119 22.3 533 CRMSALL BURIED . . . . . . . . 1.62 149 53.2 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.627 1.000 0.500 32 32.3 99 ERRCA SECONDARY STRUCTURE . . 1.469 1.000 0.500 21 38.9 54 ERRCA SURFACE . . . . . . . . 2.474 1.000 0.500 13 20.6 63 ERRCA BURIED . . . . . . . . 1.048 1.000 0.500 19 52.8 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.697 1.000 0.500 157 32.1 489 ERRMC SECONDARY STRUCTURE . . 1.506 1.000 0.500 104 38.7 269 ERRMC SURFACE . . . . . . . . 2.575 1.000 0.500 64 20.6 311 ERRMC BURIED . . . . . . . . 1.092 1.000 0.500 93 52.2 178 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.014 1.000 0.500 140 33.6 417 ERRSC RELIABLE SIDE CHAINS . 4.320 1.000 0.500 122 34.8 351 ERRSC SECONDARY STRUCTURE . . 3.908 1.000 0.500 103 40.9 252 ERRSC SURFACE . . . . . . . . 6.629 1.000 0.500 67 23.8 281 ERRSC BURIED . . . . . . . . 1.614 1.000 0.500 73 53.7 136 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.835 1.000 0.500 268 33.0 813 ERRALL SECONDARY STRUCTURE . . 2.764 1.000 0.500 187 40.0 468 ERRALL SURFACE . . . . . . . . 4.719 1.000 0.500 119 22.3 533 ERRALL BURIED . . . . . . . . 1.330 1.000 0.500 149 53.2 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 14 22 26 32 32 32 99 DISTCA CA (P) 14.14 22.22 26.26 32.32 32.32 99 DISTCA CA (RMS) 0.66 0.93 1.25 2.06 2.06 DISTCA ALL (N) 93 154 187 221 254 268 813 DISTALL ALL (P) 11.44 18.94 23.00 27.18 31.24 813 DISTALL ALL (RMS) 0.67 1.05 1.40 2.03 3.16 DISTALL END of the results output