####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 111 ( 444), selected 93 , name T0630AL396_1-D1 # Molecule2: number of CA atoms 99 ( 813), selected 93 , name T0630-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0630AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 97 - 123 4.97 16.93 LCS_AVERAGE: 24.41 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 88 - 103 1.67 17.58 LCS_AVERAGE: 11.53 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 88 - 100 0.45 17.40 LCS_AVERAGE: 8.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 93 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 7 E 7 9 13 25 3 7 9 10 12 18 21 21 24 26 27 30 33 33 35 37 41 47 50 53 LCS_GDT P 8 P 8 9 13 25 4 7 9 10 14 18 21 21 24 26 27 30 33 33 35 37 41 47 50 53 LCS_GDT K 9 K 9 9 13 25 6 7 9 10 14 18 21 21 24 26 27 29 33 33 35 37 40 47 50 53 LCS_GDT P 10 P 10 9 13 25 6 7 9 11 14 18 21 21 24 26 27 30 33 33 35 37 40 47 50 53 LCS_GDT G 11 G 11 9 13 25 6 7 9 11 14 18 21 21 24 26 27 30 33 33 35 37 40 47 50 53 LCS_GDT D 12 D 12 9 13 25 6 7 9 11 14 18 21 21 24 26 27 30 33 33 35 37 41 47 50 53 LCS_GDT L 13 L 13 9 13 25 6 7 9 11 14 18 21 21 24 26 27 30 33 33 35 37 41 47 50 53 LCS_GDT I 14 I 14 9 13 25 6 7 9 11 14 18 21 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT E 15 E 15 9 13 25 4 7 9 10 13 18 21 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT I 16 I 16 9 13 25 3 6 8 10 12 16 19 21 23 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT F 17 F 17 6 13 25 4 6 8 10 12 16 19 21 22 25 27 30 33 33 35 38 41 47 50 53 LCS_GDT R 18 R 18 6 13 25 4 6 7 10 12 14 19 21 22 25 27 30 33 33 35 37 41 47 50 53 LCS_GDT P 19 P 19 5 13 25 3 4 6 8 10 12 15 16 22 24 26 28 30 32 35 37 41 47 50 53 LCS_GDT F 20 F 20 4 10 25 3 5 6 9 11 13 17 21 22 25 27 30 33 33 35 37 41 47 50 53 LCS_GDT Y 21 Y 21 5 10 25 3 5 5 8 11 13 19 21 23 25 27 30 33 33 35 38 41 47 50 53 LCS_GDT R 22 R 22 5 10 25 4 5 6 9 12 16 19 21 23 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT H 23 H 23 5 10 25 4 5 9 11 14 18 21 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT W 24 W 24 5 7 25 4 5 5 8 12 18 21 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT A 25 A 25 5 7 25 4 5 5 7 12 15 19 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT I 26 I 26 4 7 25 3 4 5 14 15 16 21 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT Y 27 Y 27 4 7 25 3 4 4 8 12 16 19 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT V 28 V 28 4 7 25 3 4 4 6 8 18 21 21 24 26 27 30 33 33 35 37 41 47 50 53 LCS_GDT G 29 G 29 4 7 25 3 3 4 7 12 16 19 21 22 25 26 28 30 33 34 37 41 47 50 53 LCS_GDT D 30 D 30 3 7 25 3 3 4 7 12 16 19 21 22 25 26 28 29 32 33 36 41 47 50 53 LCS_GDT A 37 A 37 0 0 25 0 0 0 0 1 1 8 8 9 11 12 16 18 27 34 37 39 43 46 48 LCS_GDT P 38 P 38 0 0 15 0 0 0 0 0 0 0 0 2 14 19 22 26 27 34 37 39 43 46 48 LCS_GDT K 57 K 57 12 13 18 0 3 3 11 13 13 13 13 15 21 23 29 33 33 35 37 41 47 50 53 LCS_GDT A 58 A 58 12 13 18 3 7 11 12 13 13 13 15 18 21 26 29 33 33 35 37 41 47 50 53 LCS_GDT I 59 I 59 12 13 18 4 10 11 12 13 13 15 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT V 60 V 60 12 13 18 6 10 11 12 13 18 21 21 24 26 27 30 33 33 35 38 40 47 50 53 LCS_GDT K 61 K 61 12 13 18 6 10 11 12 14 18 21 21 24 26 27 30 33 33 35 38 40 47 50 53 LCS_GDT K 62 K 62 12 13 18 6 10 11 12 14 18 21 21 24 26 27 30 33 33 35 37 39 44 47 52 LCS_GDT E 63 E 63 12 13 18 6 10 11 12 14 18 21 21 24 26 27 30 33 33 35 37 40 47 50 53 LCS_GDT L 64 L 64 12 13 18 6 10 11 12 14 18 21 21 24 26 27 30 33 33 35 37 41 47 50 53 LCS_GDT L 65 L 65 12 13 18 6 10 11 12 14 18 21 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT Y 66 Y 66 12 13 18 6 10 11 12 14 18 21 21 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT D 67 D 67 12 13 18 6 10 11 12 13 13 21 21 24 26 27 30 33 33 35 38 40 47 50 53 LCS_GDT V 68 V 68 12 13 18 4 10 11 12 13 13 15 19 24 26 27 30 33 33 35 38 41 47 50 53 LCS_GDT A 69 A 69 12 13 18 3 4 6 12 13 15 17 19 22 26 26 29 31 33 35 38 40 47 50 53 LCS_GDT G 70 G 70 3 13 18 3 3 4 5 6 7 12 14 15 15 21 24 26 29 34 36 39 44 47 48 LCS_GDT S 71 S 71 3 6 18 3 3 4 5 6 6 8 10 12 15 15 17 19 22 29 31 33 35 38 41 LCS_GDT D 72 D 72 4 6 21 3 3 4 5 6 12 13 14 15 17 19 24 25 29 32 34 37 39 42 44 LCS_GDT K 73 K 73 4 6 21 1 3 4 8 9 13 15 19 22 24 26 28 31 33 35 37 39 44 47 47 LCS_GDT Y 74 Y 74 4 4 23 0 3 4 6 6 13 14 15 19 23 26 28 31 33 35 37 39 44 48 53 LCS_GDT Q 75 Q 75 4 4 23 3 3 4 4 6 9 11 16 17 19 22 24 29 32 35 38 40 44 48 53 LCS_GDT V 76 V 76 3 5 23 3 4 4 6 8 10 12 16 18 20 22 25 30 33 35 38 41 47 50 53 LCS_GDT N 77 N 77 4 6 23 3 4 4 6 8 9 12 16 18 23 26 29 32 33 35 38 41 47 50 53 LCS_GDT N 78 N 78 4 6 24 3 4 4 6 7 9 11 16 18 20 22 25 30 32 34 38 41 47 50 53 LCS_GDT K 79 K 79 4 7 25 3 4 4 6 8 9 11 16 18 20 22 25 30 32 34 38 40 44 47 52 LCS_GDT H 80 H 80 5 7 25 4 5 5 6 8 9 11 15 18 20 22 25 30 32 34 38 40 44 47 48 LCS_GDT D 81 D 81 5 7 25 4 5 5 6 8 9 11 16 17 20 22 24 27 30 34 38 40 44 47 48 LCS_GDT D 82 D 82 5 7 25 4 5 5 6 7 7 10 11 14 17 19 23 26 30 34 38 40 44 47 48 LCS_GDT K 83 K 83 5 7 25 4 5 5 6 6 7 9 10 11 12 15 21 27 30 34 38 40 44 47 48 LCS_GDT Y 84 Y 84 5 7 25 3 5 5 6 7 9 11 16 17 20 22 24 27 30 34 38 40 44 47 48 LCS_GDT S 85 S 85 4 7 25 3 3 4 6 7 9 11 16 17 20 22 24 27 30 34 38 40 44 47 48 LCS_GDT P 86 P 86 4 5 25 3 3 4 5 7 9 12 16 17 19 22 24 27 30 34 38 40 44 47 48 LCS_GDT L 87 L 87 4 14 25 3 3 4 4 6 9 12 16 18 20 22 24 27 30 34 38 40 44 47 48 LCS_GDT P 88 P 88 13 16 25 11 13 13 14 15 15 17 17 18 19 21 24 27 30 34 36 39 44 47 47 LCS_GDT C 89 C 89 13 16 25 11 13 13 14 15 15 17 17 18 19 21 24 26 30 33 36 39 44 47 47 LCS_GDT S 90 S 90 13 16 25 11 13 13 14 15 15 17 17 18 19 21 23 26 30 32 36 39 44 47 47 LCS_GDT K 91 K 91 13 16 25 11 13 13 14 15 15 17 17 18 20 22 24 27 30 34 38 40 44 47 48 LCS_GDT I 92 I 92 13 16 25 11 13 13 14 15 15 17 17 18 20 22 24 27 30 34 38 40 44 47 48 LCS_GDT I 93 I 93 13 16 25 11 13 13 14 15 15 17 17 18 20 21 24 26 30 34 38 40 44 47 48 LCS_GDT Q 94 Q 94 13 16 25 11 13 13 14 15 15 17 17 18 20 21 23 26 30 34 38 40 44 47 48 LCS_GDT R 95 R 95 13 16 25 11 13 13 14 15 15 17 17 18 20 22 25 27 30 34 38 41 47 50 53 LCS_GDT A 96 A 96 13 16 25 11 13 13 14 15 15 17 17 19 25 26 28 29 31 34 38 41 47 50 53 LCS_GDT E 97 E 97 13 16 27 11 13 13 14 15 15 17 17 18 20 22 24 26 30 34 37 40 43 47 51 LCS_GDT E 98 E 98 13 16 27 11 13 13 14 15 15 17 17 19 25 26 28 29 31 34 37 41 46 50 53 LCS_GDT L 99 L 99 13 16 27 11 13 13 14 15 15 17 19 22 25 26 28 30 32 34 37 41 47 50 53 LCS_GDT V 100 V 100 13 16 27 8 13 13 14 15 15 17 17 18 20 22 25 30 32 34 36 39 44 47 53 LCS_GDT G 101 G 101 4 16 27 3 4 4 7 11 15 17 17 18 19 21 23 26 30 31 36 37 40 41 44 LCS_GDT Q 102 Q 102 4 16 27 7 7 9 14 15 15 17 17 18 20 22 24 30 32 33 36 39 44 47 50 LCS_GDT E 103 E 103 4 16 27 3 4 4 10 13 15 16 16 18 20 22 24 26 30 31 36 37 40 42 44 LCS_GDT V 104 V 104 4 6 27 3 4 4 5 8 9 11 14 16 20 22 24 26 30 31 36 37 38 39 44 LCS_GDT L 105 L 105 4 6 27 3 4 4 5 6 7 11 14 18 20 22 24 25 28 31 36 37 38 39 44 LCS_GDT Y 106 Y 106 4 6 27 3 4 4 5 6 7 11 14 16 20 22 24 26 30 31 36 37 38 39 44 LCS_GDT K 107 K 107 4 6 27 3 4 4 5 8 9 11 14 16 20 22 24 26 30 31 36 37 38 39 44 LCS_GDT L 108 L 108 4 6 27 3 4 4 5 6 8 11 14 16 20 22 24 26 30 31 36 37 38 39 44 LCS_GDT T 109 T 109 9 15 27 7 7 11 14 14 15 16 16 17 18 20 22 25 28 31 36 37 44 47 53 LCS_GDT S 110 S 110 9 15 27 7 7 11 14 14 15 16 16 18 19 22 24 25 28 31 36 37 40 47 53 LCS_GDT E 111 E 111 10 15 27 7 7 11 14 14 15 16 16 18 19 22 24 25 28 31 36 37 40 44 53 LCS_GDT N 112 N 112 11 15 27 7 7 11 14 14 15 16 16 18 19 22 24 25 28 31 36 38 44 47 53 LCS_GDT C 113 C 113 11 15 27 7 7 11 14 14 15 16 16 18 19 22 24 25 28 31 36 37 44 47 53 LCS_GDT E 114 E 114 11 15 27 8 9 11 14 14 15 16 16 18 19 22 24 26 30 31 36 37 40 47 53 LCS_GDT H 115 H 115 11 15 27 8 9 11 14 14 15 16 16 18 19 22 24 26 30 31 36 38 44 48 53 LCS_GDT F 116 F 116 11 15 27 8 9 11 14 14 15 16 16 18 20 22 24 29 31 33 36 40 44 50 53 LCS_GDT V 117 V 117 11 15 27 8 9 11 14 14 15 16 16 18 20 22 24 30 32 34 37 41 47 50 53 LCS_GDT N 118 N 118 11 15 27 8 9 11 14 14 15 16 16 18 20 22 24 26 32 34 37 41 47 50 53 LCS_GDT E 119 E 119 11 15 27 8 9 11 14 14 15 16 16 18 22 23 28 30 32 34 37 41 47 50 53 LCS_GDT L 120 L 120 11 15 27 8 9 11 14 14 15 16 17 19 22 24 26 30 32 34 37 41 47 50 53 LCS_GDT R 121 R 121 11 15 27 8 9 11 14 14 15 16 16 18 20 22 25 30 32 34 37 41 46 50 53 LCS_GDT Y 122 Y 122 11 15 27 5 9 11 14 14 15 16 16 18 20 22 25 30 32 34 37 41 47 50 53 LCS_GDT G 123 G 123 10 15 27 3 3 3 9 11 14 15 17 21 25 26 28 29 31 32 36 39 44 47 53 LCS_AVERAGE LCS_A: 14.68 ( 8.09 11.53 24.41 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 13 13 14 15 18 21 21 24 26 27 30 33 33 35 38 41 47 50 53 GDT PERCENT_AT 11.11 13.13 13.13 14.14 15.15 18.18 21.21 21.21 24.24 26.26 27.27 30.30 33.33 33.33 35.35 38.38 41.41 47.47 50.51 53.54 GDT RMS_LOCAL 0.34 0.45 0.45 0.92 1.17 2.08 2.33 2.33 2.80 3.01 3.16 4.00 4.40 4.19 4.65 5.75 6.30 6.69 6.91 7.26 GDT RMS_ALL_AT 17.38 17.40 17.40 17.48 17.53 16.42 16.48 16.48 16.32 16.35 16.19 15.97 15.54 16.37 15.39 15.34 13.05 13.38 13.27 13.21 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 7 E 7 2.976 5 0.122 0.122 6.056 35.952 15.979 LGA P 8 P 8 2.643 3 0.191 0.191 3.200 57.262 32.721 LGA K 9 K 9 2.819 5 0.088 0.088 2.819 65.000 28.889 LGA P 10 P 10 1.100 3 0.026 0.026 1.578 83.810 47.891 LGA G 11 G 11 1.245 0 0.017 0.017 1.675 81.548 81.548 LGA D 12 D 12 1.104 4 0.056 0.056 1.104 88.214 44.107 LGA L 13 L 13 1.029 4 0.045 0.045 1.218 85.952 42.976 LGA I 14 I 14 0.727 4 0.190 0.190 1.479 85.952 42.976 LGA E 15 E 15 3.131 5 0.131 0.131 5.123 44.524 19.788 LGA I 16 I 16 5.653 4 0.126 0.126 6.684 20.833 10.417 LGA F 17 F 17 9.400 7 0.243 0.243 12.002 1.548 0.563 LGA R 18 R 18 10.908 7 0.036 0.036 11.869 0.119 0.043 LGA P 19 P 19 14.485 3 0.419 0.419 14.485 0.000 0.000 LGA F 20 F 20 12.679 7 0.641 0.641 13.495 0.000 0.000 LGA Y 21 Y 21 8.241 8 0.568 0.568 9.170 11.429 3.810 LGA R 22 R 22 5.635 7 0.018 0.018 6.808 28.810 10.476 LGA H 23 H 23 1.336 6 0.114 0.114 3.786 61.667 24.667 LGA W 24 W 24 2.947 10 0.027 0.027 2.947 66.905 19.116 LGA A 25 A 25 4.726 1 0.162 0.162 4.726 34.286 27.429 LGA I 26 I 26 3.648 4 0.169 0.169 5.473 35.952 17.976 LGA Y 27 Y 27 4.981 8 0.022 0.022 4.981 38.810 12.937 LGA V 28 V 28 3.291 3 0.618 0.618 5.556 36.429 20.816 LGA G 29 G 29 6.985 0 0.032 0.032 7.266 16.667 16.667 LGA D 30 D 30 9.733 4 0.543 0.543 12.017 0.476 0.238 LGA A 37 A 37 17.219 1 0.649 0.649 18.879 0.000 0.000 LGA P 38 P 38 22.934 3 0.624 0.624 22.934 0.000 0.000 LGA K 57 K 57 9.337 5 0.622 0.622 11.414 0.476 0.212 LGA A 58 A 58 10.101 1 0.655 0.655 10.101 1.548 1.238 LGA I 59 I 59 5.974 4 0.126 0.126 7.475 18.690 9.345 LGA V 60 V 60 3.381 3 0.103 0.103 3.938 57.738 32.993 LGA K 61 K 61 1.959 5 0.053 0.053 2.612 68.929 30.635 LGA K 62 K 62 1.049 5 0.055 0.055 1.750 79.286 35.238 LGA E 63 E 63 1.560 5 0.058 0.058 1.560 79.286 35.238 LGA L 64 L 64 0.921 4 0.053 0.053 1.843 81.548 40.774 LGA L 65 L 65 2.444 4 0.065 0.065 3.222 63.095 31.548 LGA Y 66 Y 66 1.419 8 0.231 0.231 1.976 77.143 25.714 LGA D 67 D 67 3.481 4 0.196 0.196 4.586 43.929 21.964 LGA V 68 V 68 4.996 3 0.588 0.588 6.647 27.024 15.442 LGA A 69 A 69 5.559 1 0.624 0.624 8.897 13.810 11.048 LGA G 70 G 70 12.816 0 0.295 0.295 13.118 0.000 0.000 LGA S 71 S 71 15.488 2 0.153 0.153 15.488 0.000 0.000 LGA D 72 D 72 13.432 4 0.672 0.672 14.072 0.000 0.000 LGA K 73 K 73 7.094 5 0.375 0.375 9.173 11.548 5.132 LGA Y 74 Y 74 7.633 8 0.540 0.540 9.119 5.833 1.944 LGA Q 75 Q 75 9.896 5 0.647 0.647 11.058 1.310 0.582 LGA V 76 V 76 11.747 3 0.655 0.655 12.334 0.000 0.000 LGA N 77 N 77 10.663 4 0.531 0.531 11.647 0.000 0.000 LGA N 78 N 78 13.589 4 0.419 0.419 16.852 0.000 0.000 LGA K 79 K 79 15.622 5 0.610 0.610 17.005 0.000 0.000 LGA H 80 H 80 18.751 6 0.211 0.211 21.867 0.000 0.000 LGA D 81 D 81 25.353 4 0.152 0.152 27.397 0.000 0.000 LGA D 82 D 82 25.134 4 0.043 0.043 25.983 0.000 0.000 LGA K 83 K 83 21.926 5 0.132 0.132 23.071 0.000 0.000 LGA Y 84 Y 84 24.471 8 0.641 0.641 26.586 0.000 0.000 LGA S 85 S 85 29.048 2 0.636 0.636 29.048 0.000 0.000 LGA P 86 P 86 25.325 3 0.177 0.177 26.553 0.000 0.000 LGA L 87 L 87 24.548 4 0.613 0.613 24.643 0.000 0.000 LGA P 88 P 88 25.234 3 0.660 0.660 25.389 0.000 0.000 LGA C 89 C 89 23.960 2 0.053 0.053 25.022 0.000 0.000 LGA S 90 S 90 26.386 2 0.025 0.025 26.386 0.000 0.000 LGA K 91 K 91 21.083 5 0.013 0.013 23.191 0.000 0.000 LGA I 92 I 92 15.728 4 0.064 0.064 18.052 0.000 0.000 LGA I 93 I 93 19.399 4 0.027 0.027 20.013 0.000 0.000 LGA Q 94 Q 94 21.740 5 0.014 0.014 21.740 0.000 0.000 LGA R 95 R 95 15.203 7 0.048 0.048 17.292 0.000 0.000 LGA A 96 A 96 14.077 1 0.017 0.017 16.780 0.000 0.000 LGA E 97 E 97 21.166 5 0.048 0.048 23.833 0.000 0.000 LGA E 98 E 98 21.912 5 0.059 0.059 23.204 0.000 0.000 LGA L 99 L 99 18.916 4 0.194 0.194 21.680 0.000 0.000 LGA V 100 V 100 22.777 3 0.597 0.597 26.999 0.000 0.000 LGA G 101 G 101 28.964 0 0.127 0.127 31.328 0.000 0.000 LGA Q 102 Q 102 27.219 5 0.578 0.578 27.741 0.000 0.000 LGA E 103 E 103 27.993 5 0.578 0.578 29.187 0.000 0.000 LGA V 104 V 104 28.068 3 0.746 0.746 31.661 0.000 0.000 LGA L 105 L 105 30.053 4 0.156 0.156 31.715 0.000 0.000 LGA Y 106 Y 106 28.478 8 0.157 0.157 28.670 0.000 0.000 LGA K 107 K 107 30.318 5 0.137 0.137 30.318 0.000 0.000 LGA L 108 L 108 27.450 4 0.270 0.270 28.716 0.000 0.000 LGA T 109 T 109 15.852 3 0.598 0.598 17.162 0.000 0.000 LGA S 110 S 110 14.069 2 0.048 0.048 14.662 0.000 0.000 LGA E 111 E 111 14.346 5 0.059 0.059 15.020 0.000 0.000 LGA N 112 N 112 16.068 4 0.028 0.028 16.599 0.000 0.000 LGA C 113 C 113 15.453 2 0.162 0.162 15.534 0.000 0.000 LGA E 114 E 114 15.162 5 0.119 0.119 15.427 0.000 0.000 LGA H 115 H 115 16.503 6 0.113 0.113 17.315 0.000 0.000 LGA F 116 F 116 16.824 7 0.085 0.085 16.824 0.000 0.000 LGA V 117 V 117 15.930 3 0.041 0.041 17.185 0.000 0.000 LGA N 118 N 118 17.322 4 0.042 0.042 19.213 0.000 0.000 LGA E 119 E 119 19.401 5 0.040 0.040 20.759 0.000 0.000 LGA L 120 L 120 18.899 4 0.035 0.035 20.611 0.000 0.000 LGA R 121 R 121 19.915 7 0.070 0.070 22.446 0.000 0.000 LGA Y 122 Y 122 21.586 8 0.037 0.037 23.795 0.000 0.000 LGA G 123 G 123 23.566 0 0.194 0.194 23.566 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 93 372 372 100.00 765 372 48.63 99 SUMMARY(RMSD_GDC): 12.404 12.320 12.320 16.296 8.294 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 111 99 4.0 21 2.33 21.717 19.324 0.866 LGA_LOCAL RMSD: 2.325 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.476 Number of assigned atoms: 93 Std_ASGN_ATOMS RMSD: 12.404 Standard rmsd on all 93 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.875504 * X + 0.102158 * Y + 0.472289 * Z + -18.455471 Y_new = 0.281828 * X + -0.901893 * Y + -0.327355 * Z + 52.407207 Z_new = 0.392512 * X + 0.419705 * Y + -0.818402 * Z + 15.359692 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.311429 -0.403362 2.667730 [DEG: 17.8436 -23.1109 152.8497 ] ZXZ: 0.964700 2.529421 0.751931 [DEG: 55.2732 144.9251 43.0825 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0630AL396_1-D1 REMARK 2: T0630-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0630AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 111 99 4.0 21 2.33 19.324 12.40 REMARK ---------------------------------------------------------- MOLECULE T0630AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1khc_A ATOM 25 N GLU 7 -5.204 24.975 5.529 1.00 0.00 N ATOM 26 CA GLU 7 -6.084 25.513 6.567 1.00 0.00 C ATOM 27 C GLU 7 -6.547 26.957 6.365 1.00 0.00 C ATOM 28 O GLU 7 -5.974 27.707 5.572 1.00 0.00 O ATOM 29 N PRO 8 -7.598 27.320 7.097 1.00 0.00 N ATOM 30 CA PRO 8 -8.180 28.660 7.089 1.00 0.00 C ATOM 31 C PRO 8 -9.028 29.065 5.890 1.00 0.00 C ATOM 32 O PRO 8 -8.632 28.898 4.730 1.00 0.00 O ATOM 33 N LYS 9 -10.203 29.606 6.198 1.00 0.00 N ATOM 34 CA LYS 9 -11.130 30.063 5.182 1.00 0.00 C ATOM 35 C LYS 9 -11.522 31.500 5.463 1.00 0.00 C ATOM 36 O LYS 9 -11.139 32.062 6.487 1.00 0.00 O ATOM 37 N PRO 10 -12.291 32.097 4.561 1.00 0.00 N ATOM 38 CA PRO 10 -12.716 33.476 4.729 1.00 0.00 C ATOM 39 C PRO 10 -13.434 33.650 6.068 1.00 0.00 C ATOM 40 O PRO 10 -14.260 32.824 6.454 1.00 0.00 O ATOM 41 N GLY 11 -13.086 34.717 6.782 1.00 0.00 N ATOM 42 CA GLY 11 -13.699 34.991 8.068 1.00 0.00 C ATOM 43 C GLY 11 -12.938 34.458 9.267 1.00 0.00 C ATOM 44 O GLY 11 -13.179 34.895 10.391 1.00 0.00 O ATOM 45 N ASP 12 -12.022 33.519 9.047 1.00 0.00 N ATOM 46 CA ASP 12 -11.257 32.944 10.151 1.00 0.00 C ATOM 47 C ASP 12 -10.342 33.959 10.828 1.00 0.00 C ATOM 48 O ASP 12 -9.636 34.720 10.163 1.00 0.00 O ATOM 49 N LEU 13 -10.372 33.964 12.157 1.00 0.00 N ATOM 50 CA LEU 13 -9.535 34.851 12.956 1.00 0.00 C ATOM 51 C LEU 13 -8.201 34.131 13.146 1.00 0.00 C ATOM 52 O LEU 13 -8.163 32.951 13.505 1.00 0.00 O ATOM 53 N ILE 14 -7.109 34.843 12.913 1.00 0.00 N ATOM 54 CA ILE 14 -5.794 34.240 13.001 1.00 0.00 C ATOM 55 C ILE 14 -4.751 35.203 13.536 1.00 0.00 C ATOM 56 O ILE 14 -5.037 36.371 13.772 1.00 0.00 O ATOM 57 N GLU 15 -3.539 34.686 13.734 1.00 0.00 N ATOM 58 CA GLU 15 -2.394 35.488 14.155 1.00 0.00 C ATOM 59 C GLU 15 -1.418 35.342 12.986 1.00 0.00 C ATOM 60 O GLU 15 -1.296 34.255 12.403 1.00 0.00 O ATOM 61 N ILE 16 -0.723 36.423 12.649 1.00 0.00 N ATOM 62 CA ILE 16 0.247 36.366 11.568 1.00 0.00 C ATOM 63 C ILE 16 1.459 37.183 11.962 1.00 0.00 C ATOM 64 O ILE 16 1.344 38.097 12.775 1.00 0.00 O ATOM 65 N PHE 17 2.621 36.863 11.408 1.00 0.00 N ATOM 66 CA PHE 17 3.824 37.612 11.740 1.00 0.00 C ATOM 67 C PHE 17 3.996 38.813 10.805 1.00 0.00 C ATOM 68 O PHE 17 3.909 38.687 9.582 1.00 0.00 O ATOM 69 N ARG 18 4.218 39.978 11.406 1.00 0.00 N ATOM 70 CA ARG 18 4.402 41.237 10.681 1.00 0.00 C ATOM 71 C ARG 18 4.917 42.272 11.682 1.00 0.00 C ATOM 72 O ARG 18 4.782 42.084 12.894 1.00 0.00 O ATOM 73 N PRO 19 5.492 43.364 11.179 1.00 0.00 N ATOM 74 CA PRO 19 6.032 44.416 12.043 1.00 0.00 C ATOM 75 C PRO 19 7.134 43.807 12.907 1.00 0.00 C ATOM 76 O PRO 19 7.218 44.075 14.107 1.00 0.00 O ATOM 77 N PHE 20 7.969 42.979 12.282 1.00 0.00 N ATOM 78 CA PHE 20 9.048 42.320 12.999 1.00 0.00 C ATOM 79 C PHE 20 8.786 40.831 13.160 1.00 0.00 C ATOM 80 O PHE 20 8.373 40.157 12.211 1.00 0.00 O ATOM 81 N TYR 21 9.033 40.317 14.363 1.00 0.00 N ATOM 82 CA TYR 21 8.806 38.907 14.636 1.00 0.00 C ATOM 83 C TYR 21 7.662 38.757 15.622 1.00 0.00 C ATOM 84 O TYR 21 7.580 37.782 16.375 1.00 0.00 O ATOM 85 N ARG 22 6.770 39.741 15.613 1.00 0.00 N ATOM 86 CA ARG 22 5.630 39.741 16.510 1.00 0.00 C ATOM 87 C ARG 22 4.389 39.191 15.831 1.00 0.00 C ATOM 88 O ARG 22 4.180 39.383 14.631 1.00 0.00 O ATOM 89 N HIS 23 3.571 38.498 16.608 1.00 0.00 N ATOM 90 CA HIS 23 2.334 37.945 16.092 1.00 0.00 C ATOM 91 C HIS 23 1.263 39.018 16.251 1.00 0.00 C ATOM 92 O HIS 23 1.086 39.583 17.332 1.00 0.00 O ATOM 93 N TRP 24 0.564 39.311 15.165 1.00 0.00 N ATOM 94 CA TRP 24 -0.489 40.308 15.201 1.00 0.00 C ATOM 95 C TRP 24 -1.789 39.660 14.759 1.00 0.00 C ATOM 96 O TRP 24 -1.797 38.788 13.888 1.00 0.00 O ATOM 97 N ALA 25 -2.911 40.079 15.360 1.00 0.00 N ATOM 98 CA ALA 25 -4.228 39.528 15.027 1.00 0.00 C ATOM 99 C ALA 25 -4.752 40.000 13.676 1.00 0.00 C ATOM 100 O ALA 25 -4.542 41.148 13.276 1.00 0.00 O ATOM 101 N ILE 26 -5.446 39.106 12.981 1.00 0.00 N ATOM 102 CA ILE 26 -5.991 39.414 11.670 1.00 0.00 C ATOM 103 C ILE 26 -7.149 38.483 11.354 1.00 0.00 C ATOM 104 O ILE 26 -7.446 37.562 12.115 1.00 0.00 O ATOM 105 N TYR 27 -7.809 38.743 10.232 1.00 0.00 N ATOM 106 CA TYR 27 -8.912 37.909 9.788 1.00 0.00 C ATOM 107 C TYR 27 -8.691 37.581 8.323 1.00 0.00 C ATOM 108 O TYR 27 -8.296 38.443 7.538 1.00 0.00 O ATOM 109 N VAL 28 -8.923 36.328 7.962 1.00 0.00 N ATOM 110 CA VAL 28 -8.761 35.924 6.578 1.00 0.00 C ATOM 111 C VAL 28 -9.899 36.555 5.787 1.00 0.00 C ATOM 112 O VAL 28 -11.063 36.477 6.181 1.00 0.00 O ATOM 113 N GLY 29 -9.558 37.204 4.680 1.00 0.00 N ATOM 114 CA GLY 29 -10.570 37.847 3.851 1.00 0.00 C ATOM 115 C GLY 29 -10.466 37.393 2.409 1.00 0.00 C ATOM 116 O GLY 29 -9.496 36.737 2.011 1.00 0.00 O ATOM 117 N ASP 30 -11.481 37.735 1.624 1.00 0.00 N ATOM 118 CA ASP 30 -11.474 37.386 0.216 1.00 0.00 C ATOM 119 C ASP 30 -10.563 38.382 -0.483 1.00 0.00 C ATOM 120 O ASP 30 -10.451 39.540 -0.064 1.00 0.00 O ATOM 121 N ALA 37 -9.902 37.926 -1.539 1.00 0.00 N ATOM 122 CA ALA 37 -9.017 38.785 -2.303 1.00 0.00 C ATOM 123 C ALA 37 -9.784 40.003 -2.803 1.00 0.00 C ATOM 124 O ALA 37 -9.201 41.060 -3.063 1.00 0.00 O ATOM 125 N PRO 38 -11.096 39.847 -2.938 1.00 0.00 N ATOM 126 CA PRO 38 -11.945 40.922 -3.431 1.00 0.00 C ATOM 127 C PRO 38 -11.838 42.177 -2.570 1.00 0.00 C ATOM 128 O PRO 38 -12.011 43.294 -3.058 1.00 0.00 O ATOM 129 N PRO 39 -11.528 41.989 -1.292 1.00 0.00 N ATOM 130 CA PRO 39 -11.411 43.094 -0.346 1.00 0.00 C ATOM 131 C PRO 39 -10.084 43.837 -0.413 1.00 0.00 C ATOM 132 O PRO 39 -9.977 44.974 0.044 1.00 0.00 O ATOM 133 N SER 40 -9.080 43.201 -1.000 1.00 0.00 N ATOM 134 CA SER 40 -7.739 43.766 -1.059 1.00 0.00 C ATOM 135 C SER 40 -7.412 44.742 -2.175 1.00 0.00 C ATOM 136 O SER 40 -6.510 45.564 -2.023 1.00 0.00 O ATOM 137 N GLU 41 -8.124 44.640 -3.293 1.00 0.00 N ATOM 138 CA GLU 41 -7.867 45.492 -4.448 1.00 0.00 C ATOM 139 C GLU 41 -6.600 45.007 -5.140 1.00 0.00 C ATOM 140 O GLU 41 -5.934 45.765 -5.845 1.00 0.00 O ATOM 141 N VAL 42 -6.263 43.742 -4.928 1.00 0.00 N ATOM 142 CA VAL 42 -5.077 43.164 -5.538 1.00 0.00 C ATOM 143 C VAL 42 -5.482 42.064 -6.518 1.00 0.00 C ATOM 144 O VAL 42 -6.142 42.323 -7.525 1.00 0.00 O ATOM 145 N ALA 43 -5.076 40.838 -6.225 1.00 0.00 N ATOM 146 CA ALA 43 -5.399 39.702 -7.072 1.00 0.00 C ATOM 147 C ALA 43 -5.671 38.523 -6.157 1.00 0.00 C ATOM 148 O ALA 43 -5.447 38.598 -4.948 1.00 0.00 O ATOM 149 N GLY 44 -6.157 37.435 -6.733 1.00 0.00 N ATOM 150 CA GLY 44 -6.425 36.244 -5.955 1.00 0.00 C ATOM 151 C GLY 44 -5.098 35.805 -5.339 1.00 0.00 C ATOM 152 O GLY 44 -4.034 36.019 -5.926 1.00 0.00 O ATOM 153 N ALA 45 -5.155 35.213 -4.150 1.00 0.00 N ATOM 154 CA ALA 45 -3.943 34.754 -3.481 1.00 0.00 C ATOM 155 C ALA 45 -3.288 33.604 -4.252 1.00 0.00 C ATOM 156 O ALA 45 -3.963 32.827 -4.939 1.00 0.00 O ATOM 157 N GLY 46 -1.969 33.504 -4.144 1.00 0.00 N ATOM 158 CA GLY 46 -1.227 32.439 -4.810 1.00 0.00 C ATOM 159 C GLY 46 -1.677 31.119 -4.184 1.00 0.00 C ATOM 160 O GLY 46 -2.219 31.105 -3.079 1.00 0.00 O ATOM 161 N ALA 47 -1.480 29.992 -4.887 1.00 0.00 N ATOM 162 CA ALA 47 -1.907 28.725 -4.287 1.00 0.00 C ATOM 163 C ALA 47 -1.306 28.496 -2.895 1.00 0.00 C ATOM 164 O ALA 47 -0.114 28.713 -2.674 1.00 0.00 O ATOM 165 N ALA 48 -2.154 28.082 -1.957 1.00 0.00 N ATOM 166 CA ALA 48 -1.702 27.822 -0.600 1.00 0.00 C ATOM 167 C ALA 48 -1.572 29.048 0.286 1.00 0.00 C ATOM 168 O ALA 48 -1.233 28.929 1.466 1.00 0.00 O ATOM 169 N SER 49 -1.837 30.225 -0.275 1.00 0.00 N ATOM 170 CA SER 49 -1.737 31.466 0.475 1.00 0.00 C ATOM 171 C SER 49 -3.117 32.036 0.787 1.00 0.00 C ATOM 172 O SER 49 -4.130 31.574 0.250 1.00 0.00 O ATOM 173 N VAL 50 -3.145 33.039 1.660 1.00 0.00 N ATOM 174 CA VAL 50 -4.389 33.680 2.080 1.00 0.00 C ATOM 175 C VAL 50 -4.208 35.184 2.212 1.00 0.00 C ATOM 176 O VAL 50 -3.111 35.664 2.485 1.00 0.00 O ATOM 177 N MET 51 -5.290 35.926 2.013 1.00 0.00 N ATOM 178 CA MET 51 -5.247 37.366 2.203 1.00 0.00 C ATOM 179 C MET 51 -5.805 37.552 3.602 1.00 0.00 C ATOM 180 O MET 51 -6.814 36.938 3.962 1.00 0.00 O ATOM 181 N SER 52 -5.128 38.358 4.406 1.00 0.00 N ATOM 182 CA SER 52 -5.598 38.629 5.754 1.00 0.00 C ATOM 183 C SER 52 -5.646 40.130 5.963 1.00 0.00 C ATOM 184 O SER 52 -4.834 40.871 5.401 1.00 0.00 O ATOM 185 N ALA 53 -6.615 40.584 6.748 1.00 0.00 N ATOM 186 CA ALA 53 -6.706 41.998 7.062 1.00 0.00 C ATOM 187 C ALA 53 -6.366 42.134 8.546 1.00 0.00 C ATOM 188 O ALA 53 -7.040 41.555 9.406 1.00 0.00 O ATOM 189 N LEU 54 -5.298 42.874 8.830 1.00 0.00 N ATOM 190 CA LEU 54 -4.840 43.088 10.204 1.00 0.00 C ATOM 191 C LEU 54 -5.830 43.911 11.008 1.00 0.00 C ATOM 192 O LEU 54 -6.324 44.940 10.535 1.00 0.00 O ATOM 193 N THR 55 -6.120 43.457 12.224 1.00 0.00 N ATOM 194 CA THR 55 -7.021 44.193 13.097 1.00 0.00 C ATOM 195 C THR 55 -6.240 45.425 13.533 1.00 0.00 C ATOM 196 O THR 55 -5.018 45.363 13.692 1.00 0.00 O ATOM 197 N ASP 56 -6.930 46.546 13.703 1.00 0.00 N ATOM 198 CA ASP 56 -6.242 47.759 14.093 1.00 0.00 C ATOM 199 C ASP 56 -6.036 48.671 12.901 1.00 0.00 C ATOM 200 O ASP 56 -6.831 49.586 12.689 1.00 0.00 O ATOM 201 N LYS 57 -4.992 48.430 12.108 1.00 0.00 N ATOM 202 CA LYS 57 -4.737 49.276 10.939 1.00 0.00 C ATOM 203 C LYS 57 -5.519 48.894 9.676 1.00 0.00 C ATOM 204 O LYS 57 -5.554 49.653 8.708 1.00 0.00 O ATOM 205 N ALA 58 -6.148 47.723 9.689 1.00 0.00 N ATOM 206 CA ALA 58 -6.944 47.301 8.547 1.00 0.00 C ATOM 207 C ALA 58 -6.217 47.089 7.230 1.00 0.00 C ATOM 208 O ALA 58 -6.854 47.015 6.180 1.00 0.00 O ATOM 209 N ILE 59 -4.893 46.990 7.278 1.00 0.00 N ATOM 210 CA ILE 59 -4.102 46.764 6.071 1.00 0.00 C ATOM 211 C ILE 59 -4.208 45.294 5.669 1.00 0.00 C ATOM 212 O ILE 59 -4.655 44.461 6.459 1.00 0.00 O ATOM 213 N VAL 60 -3.796 44.975 4.444 1.00 0.00 N ATOM 214 CA VAL 60 -3.872 43.608 3.951 1.00 0.00 C ATOM 215 C VAL 60 -2.511 43.006 3.654 1.00 0.00 C ATOM 216 O VAL 60 -1.594 43.704 3.222 1.00 0.00 O ATOM 217 N LYS 61 -2.402 41.697 3.864 1.00 0.00 N ATOM 218 CA LYS 61 -1.169 40.967 3.597 1.00 0.00 C ATOM 219 C LYS 61 -1.501 39.601 3.006 1.00 0.00 C ATOM 220 O LYS 61 -2.492 38.976 3.401 1.00 0.00 O ATOM 221 N LYS 62 -0.684 39.146 2.054 1.00 0.00 N ATOM 222 CA LYS 62 -0.857 37.816 1.472 1.00 0.00 C ATOM 223 C LYS 62 0.138 36.953 2.231 1.00 0.00 C ATOM 224 O LYS 62 1.341 37.217 2.198 1.00 0.00 O ATOM 225 N GLU 63 -0.364 35.937 2.924 1.00 0.00 N ATOM 226 CA GLU 63 0.480 35.057 3.732 1.00 0.00 C ATOM 227 C GLU 63 0.125 33.595 3.494 1.00 0.00 C ATOM 228 O GLU 63 -1.045 33.258 3.307 1.00 0.00 O ATOM 229 N LEU 64 1.137 32.732 3.512 1.00 0.00 N ATOM 230 CA LEU 64 0.933 31.299 3.320 1.00 0.00 C ATOM 231 C LEU 64 0.091 30.754 4.474 1.00 0.00 C ATOM 232 O LEU 64 0.255 31.169 5.621 1.00 0.00 O ATOM 233 N LEU 65 -0.820 29.837 4.175 1.00 0.00 N ATOM 234 CA LEU 65 -1.654 29.254 5.222 1.00 0.00 C ATOM 235 C LEU 65 -0.760 28.590 6.270 1.00 0.00 C ATOM 236 O LEU 65 -1.113 28.517 7.450 1.00 0.00 O ATOM 237 N TYR 66 0.403 28.119 5.822 1.00 0.00 N ATOM 238 CA TYR 66 1.376 27.445 6.680 1.00 0.00 C ATOM 239 C TYR 66 2.153 28.396 7.594 1.00 0.00 C ATOM 240 O TYR 66 3.014 27.958 8.364 1.00 0.00 O ATOM 241 N ASP 67 1.860 29.691 7.507 1.00 0.00 N ATOM 242 CA ASP 67 2.537 30.686 8.339 1.00 0.00 C ATOM 243 C ASP 67 1.547 31.396 9.259 1.00 0.00 C ATOM 244 O ASP 67 1.904 32.322 9.988 1.00 0.00 O ATOM 245 N VAL 68 0.295 30.953 9.212 1.00 0.00 N ATOM 246 CA VAL 68 -0.748 31.534 10.043 1.00 0.00 C ATOM 247 C VAL 68 -1.165 30.542 11.113 1.00 0.00 C ATOM 248 O VAL 68 -1.060 29.327 10.924 1.00 0.00 O ATOM 249 N ALA 69 -1.632 31.067 12.240 1.00 0.00 N ATOM 250 CA ALA 69 -2.116 30.221 13.319 1.00 0.00 C ATOM 251 C ALA 69 -3.507 30.718 13.708 1.00 0.00 C ATOM 252 O ALA 69 -3.824 31.899 13.542 1.00 0.00 O ATOM 253 N GLY 70 -4.339 29.812 14.207 1.00 0.00 N ATOM 254 CA GLY 70 -5.687 30.173 14.622 1.00 0.00 C ATOM 255 C GLY 70 -5.618 31.134 15.808 1.00 0.00 C ATOM 256 O GLY 70 -4.748 31.008 16.670 1.00 0.00 O ATOM 257 N SER 71 -6.521 32.105 15.851 1.00 0.00 N ATOM 258 CA SER 71 -6.542 33.038 16.969 1.00 0.00 C ATOM 259 C SER 71 -6.785 32.252 18.269 1.00 0.00 C ATOM 260 O SER 71 -6.352 32.662 19.350 1.00 0.00 O ATOM 261 N ASP 72 -7.477 31.121 18.143 1.00 0.00 N ATOM 262 CA ASP 72 -7.774 30.274 19.286 1.00 0.00 C ATOM 263 C ASP 72 -6.564 29.914 20.130 1.00 0.00 C ATOM 264 O ASP 72 -6.709 29.615 21.315 1.00 0.00 O ATOM 265 N LYS 73 -5.380 29.889 19.521 1.00 0.00 N ATOM 266 CA LYS 73 -4.151 29.625 20.265 1.00 0.00 C ATOM 267 C LYS 73 -3.807 31.034 20.750 1.00 0.00 C ATOM 268 O LYS 73 -2.808 31.646 20.353 1.00 0.00 O ATOM 269 N TYR 74 -4.680 31.545 21.612 1.00 0.00 N ATOM 270 CA TYR 74 -4.562 32.895 22.117 1.00 0.00 C ATOM 271 C TYR 74 -3.392 33.213 23.024 1.00 0.00 C ATOM 272 O TYR 74 -2.542 34.041 22.679 1.00 0.00 O ATOM 273 N GLN 75 -3.358 32.579 24.192 1.00 0.00 N ATOM 274 CA GLN 75 -2.290 32.824 25.150 1.00 0.00 C ATOM 275 C GLN 75 -0.909 32.501 24.563 1.00 0.00 C ATOM 276 O GLN 75 0.095 33.107 24.940 1.00 0.00 O ATOM 277 N VAL 76 -0.867 31.571 23.617 1.00 0.00 N ATOM 278 CA VAL 76 0.396 31.191 22.997 1.00 0.00 C ATOM 279 C VAL 76 1.013 32.308 22.166 1.00 0.00 C ATOM 280 O VAL 76 2.235 32.453 22.129 1.00 0.00 O ATOM 281 N ASN 77 0.179 33.110 21.510 1.00 0.00 N ATOM 282 CA ASN 77 0.698 34.160 20.642 1.00 0.00 C ATOM 283 C ASN 77 0.526 35.600 21.103 1.00 0.00 C ATOM 284 O ASN 77 1.177 36.500 20.578 1.00 0.00 O ATOM 285 N ASN 78 -0.348 35.822 22.077 1.00 0.00 N ATOM 286 CA ASN 78 -0.544 37.157 22.615 1.00 0.00 C ATOM 287 C ASN 78 0.804 37.509 23.247 1.00 0.00 C ATOM 288 O ASN 78 1.480 36.635 23.791 1.00 0.00 O ATOM 289 N LYS 79 1.205 38.772 23.157 1.00 0.00 N ATOM 290 CA LYS 79 2.469 39.211 23.734 1.00 0.00 C ATOM 291 C LYS 79 2.193 40.335 24.724 1.00 0.00 C ATOM 292 O LYS 79 1.943 41.472 24.327 1.00 0.00 O ATOM 293 N HIS 80 2.235 40.022 26.014 1.00 0.00 N ATOM 294 CA HIS 80 1.952 41.020 27.039 1.00 0.00 C ATOM 295 C HIS 80 2.898 42.211 26.999 1.00 0.00 C ATOM 296 O HIS 80 2.474 43.350 27.193 1.00 0.00 O ATOM 297 N ASP 81 4.177 41.961 26.745 1.00 0.00 N ATOM 298 CA ASP 81 5.145 43.056 26.681 1.00 0.00 C ATOM 299 C ASP 81 4.763 44.017 25.552 1.00 0.00 C ATOM 300 O ASP 81 4.751 45.233 25.744 1.00 0.00 O ATOM 301 N ASP 82 4.434 43.472 24.383 1.00 0.00 N ATOM 302 CA ASP 82 4.042 44.305 23.247 1.00 0.00 C ATOM 303 C ASP 82 2.757 45.059 23.573 1.00 0.00 C ATOM 304 O ASP 82 2.633 46.247 23.286 1.00 0.00 O ATOM 305 N LYS 83 1.805 44.359 24.185 1.00 0.00 N ATOM 306 CA LYS 83 0.521 44.951 24.567 1.00 0.00 C ATOM 307 C LYS 83 0.729 46.187 25.446 1.00 0.00 C ATOM 308 O LYS 83 0.132 47.237 25.216 1.00 0.00 O ATOM 309 N TYR 84 1.588 46.058 26.451 1.00 0.00 N ATOM 310 CA TYR 84 1.853 47.163 27.366 1.00 0.00 C ATOM 311 C TYR 84 2.637 48.309 26.731 1.00 0.00 C ATOM 312 O TYR 84 2.492 49.467 27.129 1.00 0.00 O ATOM 313 N SER 85 3.451 47.987 25.733 1.00 0.00 N ATOM 314 CA SER 85 4.274 48.989 25.065 1.00 0.00 C ATOM 315 C SER 85 3.589 49.780 23.951 1.00 0.00 C ATOM 316 O SER 85 3.802 50.984 23.826 1.00 0.00 O ATOM 317 N PRO 86 2.760 49.115 23.155 1.00 0.00 N ATOM 318 CA PRO 86 2.116 49.776 22.027 1.00 0.00 C ATOM 319 C PRO 86 0.615 50.002 22.100 1.00 0.00 C ATOM 320 O PRO 86 -0.155 49.077 22.350 1.00 0.00 O ATOM 321 N LEU 87 0.211 51.244 21.852 1.00 0.00 N ATOM 322 CA LEU 87 -1.197 51.607 21.828 1.00 0.00 C ATOM 323 C LEU 87 -1.842 50.886 20.651 1.00 0.00 C ATOM 324 O LEU 87 -2.983 50.435 20.734 1.00 0.00 O ATOM 325 N PRO 88 -1.097 50.787 19.551 1.00 0.00 N ATOM 326 CA PRO 88 -1.587 50.130 18.342 1.00 0.00 C ATOM 327 C PRO 88 -1.917 48.650 18.560 1.00 0.00 C ATOM 328 O PRO 88 -2.880 48.135 17.989 1.00 0.00 O ATOM 329 N CYS 89 -1.114 47.969 19.374 1.00 0.00 N ATOM 330 CA CYS 89 -1.352 46.557 19.649 1.00 0.00 C ATOM 331 C CYS 89 -2.611 46.428 20.498 1.00 0.00 C ATOM 332 O CYS 89 -3.421 45.523 20.294 1.00 0.00 O ATOM 333 N SER 90 -2.777 47.340 21.450 1.00 0.00 N ATOM 334 CA SER 90 -3.948 47.301 22.311 1.00 0.00 C ATOM 335 C SER 90 -5.205 47.567 21.487 1.00 0.00 C ATOM 336 O SER 90 -6.223 46.900 21.672 1.00 0.00 O ATOM 337 N LYS 91 -5.127 48.526 20.569 1.00 0.00 N ATOM 338 CA LYS 91 -6.267 48.844 19.713 1.00 0.00 C ATOM 339 C LYS 91 -6.584 47.640 18.819 1.00 0.00 C ATOM 340 O LYS 91 -7.745 47.307 18.602 1.00 0.00 O ATOM 341 N ILE 92 -5.543 46.992 18.305 1.00 0.00 N ATOM 342 CA ILE 92 -5.724 45.815 17.459 1.00 0.00 C ATOM 343 C ILE 92 -6.442 44.723 18.250 1.00 0.00 C ATOM 344 O ILE 92 -7.373 44.090 17.752 1.00 0.00 O ATOM 345 N ILE 93 -5.995 44.514 19.487 1.00 0.00 N ATOM 346 CA ILE 93 -6.562 43.499 20.375 1.00 0.00 C ATOM 347 C ILE 93 -8.033 43.749 20.681 1.00 0.00 C ATOM 348 O ILE 93 -8.828 42.814 20.751 1.00 0.00 O ATOM 349 N GLN 94 -8.385 45.015 20.877 1.00 0.00 N ATOM 350 CA GLN 94 -9.764 45.377 21.161 1.00 0.00 C ATOM 351 C GLN 94 -10.685 44.986 20.008 1.00 0.00 C ATOM 352 O GLN 94 -11.705 44.332 20.212 1.00 0.00 O ATOM 353 N ARG 95 -10.322 45.394 18.796 1.00 0.00 N ATOM 354 CA ARG 95 -11.132 45.084 17.633 1.00 0.00 C ATOM 355 C ARG 95 -11.175 43.592 17.377 1.00 0.00 C ATOM 356 O ARG 95 -12.189 43.079 16.917 1.00 0.00 O ATOM 357 N ALA 96 -10.077 42.902 17.686 1.00 0.00 N ATOM 358 CA ALA 96 -10.006 41.454 17.502 1.00 0.00 C ATOM 359 C ALA 96 -10.975 40.749 18.446 1.00 0.00 C ATOM 360 O ALA 96 -11.755 39.891 18.031 1.00 0.00 O ATOM 361 N GLU 97 -10.914 41.114 19.724 1.00 0.00 N ATOM 362 CA GLU 97 -11.767 40.498 20.727 1.00 0.00 C ATOM 363 C GLU 97 -13.206 40.978 20.628 1.00 0.00 C ATOM 364 O GLU 97 -14.112 40.314 21.117 1.00 0.00 O ATOM 365 N GLU 98 -13.416 42.126 19.987 1.00 0.00 N ATOM 366 CA GLU 98 -14.765 42.639 19.782 1.00 0.00 C ATOM 367 C GLU 98 -15.407 41.710 18.753 1.00 0.00 C ATOM 368 O GLU 98 -16.555 41.293 18.902 1.00 0.00 O ATOM 369 N LEU 99 -14.650 41.378 17.711 1.00 0.00 N ATOM 370 CA LEU 99 -15.150 40.478 16.686 1.00 0.00 C ATOM 371 C LEU 99 -15.370 39.098 17.302 1.00 0.00 C ATOM 372 O LEU 99 -16.360 38.427 17.011 1.00 0.00 O ATOM 373 N VAL 100 -14.441 38.681 18.158 1.00 0.00 N ATOM 374 CA VAL 100 -14.534 37.381 18.815 1.00 0.00 C ATOM 375 C VAL 100 -15.778 37.266 19.691 1.00 0.00 C ATOM 376 O VAL 100 -16.516 36.278 19.614 1.00 0.00 O ATOM 377 N GLY 101 -16.021 38.269 20.526 1.00 0.00 N ATOM 378 CA GLY 101 -17.178 38.206 21.399 1.00 0.00 C ATOM 379 C GLY 101 -18.493 38.266 20.616 1.00 0.00 C ATOM 380 O GLY 101 -19.484 37.681 21.034 1.00 0.00 O ATOM 381 N GLN 102 -18.511 38.956 19.478 1.00 0.00 N ATOM 382 CA GLN 102 -19.739 39.013 18.689 1.00 0.00 C ATOM 383 C GLN 102 -20.017 37.612 18.144 1.00 0.00 C ATOM 384 O GLN 102 -21.151 37.142 18.160 1.00 0.00 O ATOM 385 N GLU 103 -18.972 36.940 17.674 1.00 0.00 N ATOM 386 CA GLU 103 -19.121 35.596 17.128 1.00 0.00 C ATOM 387 C GLU 103 -19.585 34.568 18.161 1.00 0.00 C ATOM 388 O GLU 103 -20.513 33.790 17.911 1.00 0.00 O ATOM 389 N VAL 104 -18.941 34.587 19.325 1.00 0.00 N ATOM 390 CA VAL 104 -19.223 33.635 20.392 1.00 0.00 C ATOM 391 C VAL 104 -20.437 33.934 21.260 1.00 0.00 C ATOM 392 O VAL 104 -20.828 33.104 22.076 1.00 0.00 O ATOM 393 N LEU 105 -21.031 35.107 21.096 1.00 0.00 N ATOM 394 CA LEU 105 -22.183 35.453 21.911 1.00 0.00 C ATOM 395 C LEU 105 -21.794 35.785 23.342 1.00 0.00 C ATOM 396 O LEU 105 -22.602 35.645 24.262 1.00 0.00 O ATOM 397 N TYR 106 -20.551 36.222 23.536 1.00 0.00 N ATOM 398 CA TYR 106 -20.054 36.581 24.866 1.00 0.00 C ATOM 399 C TYR 106 -20.406 38.042 25.124 1.00 0.00 C ATOM 400 O TYR 106 -20.089 38.922 24.322 1.00 0.00 O ATOM 401 N LYS 107 -21.061 38.301 26.248 1.00 0.00 N ATOM 402 CA LYS 107 -21.485 39.662 26.559 1.00 0.00 C ATOM 403 C LYS 107 -20.515 40.436 27.446 1.00 0.00 C ATOM 404 O LYS 107 -19.984 39.903 28.421 1.00 0.00 O ATOM 405 N LEU 108 -20.276 41.692 27.074 1.00 0.00 N ATOM 406 CA LEU 108 -19.417 42.586 27.839 1.00 0.00 C ATOM 407 C LEU 108 -20.199 43.883 27.973 1.00 0.00 C ATOM 408 O LEU 108 -21.165 44.097 27.250 1.00 0.00 O ATOM 409 N THR 109 -10.079 51.966 26.215 1.00 0.00 N ATOM 410 CA THR 109 -9.941 50.680 25.540 1.00 0.00 C ATOM 411 C THR 109 -9.252 49.679 26.464 1.00 0.00 C ATOM 412 O THR 109 -9.608 48.504 26.491 1.00 0.00 O ATOM 413 N SER 110 -8.271 50.151 27.222 1.00 0.00 N ATOM 414 CA SER 110 -7.548 49.289 28.146 1.00 0.00 C ATOM 415 C SER 110 -8.497 48.731 29.201 1.00 0.00 C ATOM 416 O SER 110 -8.423 47.557 29.552 1.00 0.00 O ATOM 417 N GLU 111 -9.386 49.584 29.704 1.00 0.00 N ATOM 418 CA GLU 111 -10.356 49.187 30.717 1.00 0.00 C ATOM 419 C GLU 111 -11.334 48.168 30.140 1.00 0.00 C ATOM 420 O GLU 111 -11.654 47.168 30.779 1.00 0.00 O ATOM 421 N ASN 112 -11.808 48.427 28.925 1.00 0.00 N ATOM 422 CA ASN 112 -12.746 47.522 28.267 1.00 0.00 C ATOM 423 C ASN 112 -12.083 46.185 27.970 1.00 0.00 C ATOM 424 O ASN 112 -12.717 45.136 28.048 1.00 0.00 O ATOM 425 N CYS 113 -10.801 46.239 27.629 1.00 0.00 N ATOM 426 CA CYS 113 -10.045 45.038 27.302 1.00 0.00 C ATOM 427 C CYS 113 -9.813 44.106 28.483 1.00 0.00 C ATOM 428 O CYS 113 -9.693 42.896 28.296 1.00 0.00 O ATOM 429 N GLU 114 -9.746 44.653 29.696 1.00 0.00 N ATOM 430 CA GLU 114 -9.483 43.818 30.865 1.00 0.00 C ATOM 431 C GLU 114 -10.338 42.543 30.924 1.00 0.00 C ATOM 432 O GLU 114 -9.800 41.435 30.940 1.00 0.00 O ATOM 433 N HIS 115 -11.676 42.679 30.980 1.00 0.00 N ATOM 434 CA HIS 115 -12.493 41.461 31.031 1.00 0.00 C ATOM 435 C HIS 115 -12.473 40.645 29.731 1.00 0.00 C ATOM 436 O HIS 115 -12.687 39.437 29.748 1.00 0.00 O ATOM 437 N PHE 116 -12.213 41.309 28.609 1.00 0.00 N ATOM 438 CA PHE 116 -12.168 40.629 27.321 1.00 0.00 C ATOM 439 C PHE 116 -10.942 39.722 27.245 1.00 0.00 C ATOM 440 O PHE 116 -11.013 38.617 26.715 1.00 0.00 O ATOM 441 N VAL 117 -9.817 40.191 27.779 1.00 0.00 N ATOM 442 CA VAL 117 -8.587 39.402 27.777 1.00 0.00 C ATOM 443 C VAL 117 -8.695 38.243 28.770 1.00 0.00 C ATOM 444 O VAL 117 -8.145 37.173 28.540 1.00 0.00 O ATOM 445 N ASN 118 -9.404 38.460 29.878 1.00 0.00 N ATOM 446 CA ASN 118 -9.585 37.406 30.873 1.00 0.00 C ATOM 447 C ASN 118 -10.365 36.271 30.219 1.00 0.00 C ATOM 448 O ASN 118 -10.065 35.092 30.421 1.00 0.00 O ATOM 449 N GLU 119 -11.369 36.642 29.431 1.00 0.00 N ATOM 450 CA GLU 119 -12.197 35.679 28.710 1.00 0.00 C ATOM 451 C GLU 119 -11.335 34.924 27.683 1.00 0.00 C ATOM 452 O GLU 119 -11.378 33.697 27.593 1.00 0.00 O ATOM 453 N LEU 120 -10.539 35.670 26.922 1.00 0.00 N ATOM 454 CA LEU 120 -9.668 35.085 25.908 1.00 0.00 C ATOM 455 C LEU 120 -8.604 34.165 26.507 1.00 0.00 C ATOM 456 O LEU 120 -8.454 33.018 26.083 1.00 0.00 O ATOM 457 N ARG 121 -7.860 34.668 27.485 1.00 0.00 N ATOM 458 CA ARG 121 -6.820 33.872 28.118 1.00 0.00 C ATOM 459 C ARG 121 -7.406 32.663 28.830 1.00 0.00 C ATOM 460 O ARG 121 -6.735 31.646 28.985 1.00 0.00 O ATOM 461 N TYR 122 -8.661 32.780 29.256 1.00 0.00 N ATOM 462 CA TYR 122 -9.324 31.692 29.960 1.00 0.00 C ATOM 463 C TYR 122 -9.812 30.594 29.045 1.00 0.00 C ATOM 464 O TYR 122 -10.357 29.587 29.504 1.00 0.00 O ATOM 465 N GLY 123 -9.621 30.787 27.741 1.00 0.00 N ATOM 466 CA GLY 123 -10.043 29.785 26.782 1.00 0.00 C ATOM 467 C GLY 123 -11.370 30.068 26.102 1.00 0.00 C ATOM 468 O GLY 123 -11.990 29.158 25.552 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 372 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 67.09 59.6 146 75.6 193 ARMSMC SECONDARY STRUCTURE . . 53.39 59.2 71 65.7 108 ARMSMC SURFACE . . . . . . . . 70.57 60.8 97 80.2 121 ARMSMC BURIED . . . . . . . . 59.60 57.1 49 68.1 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 84 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 75 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 37 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.40 (Number of atoms: 93) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.40 93 93.9 99 CRMSCA CRN = ALL/NP . . . . . 0.1334 CRMSCA SECONDARY STRUCTURE . . 11.18 49 90.7 54 CRMSCA SURFACE . . . . . . . . 13.63 61 96.8 63 CRMSCA BURIED . . . . . . . . 9.64 32 88.9 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.32 372 76.1 489 CRMSMC SECONDARY STRUCTURE . . 10.88 196 72.9 269 CRMSMC SURFACE . . . . . . . . 13.46 244 78.5 311 CRMSMC BURIED . . . . . . . . 9.78 128 71.9 178 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 417 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 351 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 252 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 281 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 136 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.32 372 45.8 813 CRMSALL SECONDARY STRUCTURE . . 10.88 196 41.9 468 CRMSALL SURFACE . . . . . . . . 13.46 244 45.8 533 CRMSALL BURIED . . . . . . . . 9.78 128 45.7 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.171 1.000 0.500 93 93.9 99 ERRCA SECONDARY STRUCTURE . . 10.181 1.000 0.500 49 90.7 54 ERRCA SURFACE . . . . . . . . 12.438 1.000 0.500 61 96.8 63 ERRCA BURIED . . . . . . . . 8.756 1.000 0.500 32 88.9 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.134 1.000 0.500 372 76.1 489 ERRMC SECONDARY STRUCTURE . . 9.919 1.000 0.500 196 72.9 269 ERRMC SURFACE . . . . . . . . 12.292 1.000 0.500 244 78.5 311 ERRMC BURIED . . . . . . . . 8.928 1.000 0.500 128 71.9 178 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 417 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 351 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 252 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 281 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 136 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.134 1.000 0.500 372 45.8 813 ERRALL SECONDARY STRUCTURE . . 9.919 1.000 0.500 196 41.9 468 ERRALL SURFACE . . . . . . . . 12.292 1.000 0.500 244 45.8 533 ERRALL BURIED . . . . . . . . 8.928 1.000 0.500 128 45.7 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 7 13 42 93 99 DISTCA CA (P) 0.00 1.01 7.07 13.13 42.42 99 DISTCA CA (RMS) 0.00 1.03 2.49 3.49 6.76 DISTCA ALL (N) 1 4 17 50 166 372 813 DISTALL ALL (P) 0.12 0.49 2.09 6.15 20.42 813 DISTALL ALL (RMS) 0.98 1.49 2.43 3.64 6.74 DISTALL END of the results output