####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # ERROR! Check molecule: 1 and the amino acid number 14 and name ILE # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 14 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 40 and name SER # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 40 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 41 and name GLU # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 41 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 48 and name ALA # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 48 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 50 and name VAL # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 50 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 53 and name ALA # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 53 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 54 and name LEU # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 54 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 56 and name ASP # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 56 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 57 and name LYS # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 57 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 14 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 57 (molecule: 1) # Only one atom (first) is used for calculations. # Molecule1: number of CA atoms 52 ( 244), selected 34 , name T0630AL285_1-D1 # Molecule2: number of CA atoms 99 ( 813), selected 34 , name T0630-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0630AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 7 - 58 4.09 4.09 LCS_AVERAGE: 34.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 7 - 38 2.00 4.71 LCS_AVERAGE: 30.42 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 22 - 38 0.79 4.83 LCS_AVERAGE: 12.33 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 34 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 7 E 7 10 32 34 3 6 13 21 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT P 8 P 8 10 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT K 9 K 9 10 32 34 16 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT P 10 P 10 10 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT G 11 G 11 10 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT D 12 D 12 10 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT L 13 L 13 10 32 34 5 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT I 14 I 14 10 32 34 10 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT E 15 E 15 10 32 34 10 21 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT I 16 I 16 10 32 34 7 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT F 17 F 17 10 32 34 3 13 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT R 18 R 18 4 32 34 1 3 4 24 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT P 19 P 19 4 32 34 1 5 9 12 17 25 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT F 20 F 20 4 32 34 2 4 5 5 11 25 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT Y 21 Y 21 4 32 34 0 3 5 5 8 11 28 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT R 22 R 22 17 32 34 12 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT H 23 H 23 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT W 24 W 24 17 32 34 16 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT A 25 A 25 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT I 26 I 26 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT Y 27 Y 27 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT V 28 V 28 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT G 29 G 29 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT D 30 D 30 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT G 31 G 31 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT Y 32 Y 32 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT V 33 V 33 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT V 34 V 34 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT H 35 H 35 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT L 36 L 36 17 32 34 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT A 37 A 37 17 32 34 6 20 24 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT P 38 P 38 17 32 34 6 18 23 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 LCS_GDT K 57 K 57 0 0 34 0 0 0 4 8 9 9 10 11 13 13 14 15 18 19 21 29 30 30 34 LCS_GDT A 58 A 58 0 0 34 0 0 0 2 5 9 9 12 14 16 22 26 31 32 33 33 33 33 33 34 LCS_AVERAGE LCS_A: 25.70 ( 12.33 30.42 34.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 22 25 26 27 29 29 31 32 32 32 32 32 32 33 33 33 33 33 34 GDT PERCENT_AT 17.17 22.22 25.25 26.26 27.27 29.29 29.29 31.31 32.32 32.32 32.32 32.32 32.32 32.32 33.33 33.33 33.33 33.33 33.33 34.34 GDT RMS_LOCAL 0.30 0.50 0.66 0.78 0.95 1.26 1.26 1.90 2.00 2.00 2.00 2.00 2.00 2.00 3.00 3.00 3.00 3.00 3.00 4.09 GDT RMS_ALL_AT 4.99 5.07 5.19 5.12 5.04 4.86 4.86 4.69 4.71 4.71 4.71 4.71 4.71 4.71 4.29 4.29 4.29 4.29 4.29 4.09 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 7 E 7 2.933 5 0.632 0.632 2.933 68.929 30.635 LGA P 8 P 8 0.625 3 0.150 0.150 1.139 88.214 50.408 LGA K 9 K 9 0.675 5 0.037 0.037 0.714 90.476 40.212 LGA P 10 P 10 0.688 3 0.055 0.055 0.825 90.476 51.701 LGA G 11 G 11 1.120 0 0.059 0.059 1.302 83.690 83.690 LGA D 12 D 12 0.892 4 0.084 0.084 0.892 92.857 46.429 LGA L 13 L 13 1.544 4 0.038 0.038 2.039 70.833 35.417 LGA I 14 I 14 1.949 4 0.047 0.047 2.041 70.833 35.417 LGA E 15 E 15 2.754 5 0.100 0.100 3.603 51.905 23.069 LGA I 16 I 16 2.846 4 0.108 0.108 2.901 59.048 29.524 LGA F 17 F 17 4.165 7 0.445 0.445 4.165 45.119 16.407 LGA R 18 R 18 2.484 7 0.074 0.074 2.484 64.762 23.550 LGA P 19 P 19 4.167 3 0.622 0.622 6.723 29.762 17.007 LGA F 20 F 20 4.313 7 0.654 0.654 5.053 37.619 13.680 LGA Y 21 Y 21 4.283 8 0.072 0.072 4.314 51.071 17.024 LGA R 22 R 22 2.619 7 0.662 0.662 2.619 62.857 22.857 LGA H 23 H 23 1.400 6 0.025 0.025 1.618 79.286 31.714 LGA W 24 W 24 0.856 10 0.026 0.026 1.013 88.214 25.204 LGA A 25 A 25 0.665 1 0.057 0.057 0.700 92.857 74.286 LGA I 26 I 26 0.568 4 0.067 0.067 0.676 92.857 46.429 LGA Y 27 Y 27 0.330 8 0.066 0.066 0.385 100.000 33.333 LGA V 28 V 28 0.478 3 0.103 0.103 1.471 92.976 53.129 LGA G 29 G 29 0.582 0 0.022 0.022 0.582 97.619 97.619 LGA D 30 D 30 0.312 4 0.038 0.038 0.425 100.000 50.000 LGA G 31 G 31 0.557 0 0.045 0.045 0.852 92.857 92.857 LGA Y 32 Y 32 0.682 8 0.057 0.057 0.682 95.238 31.746 LGA V 33 V 33 0.825 3 0.032 0.032 0.948 90.476 51.701 LGA V 34 V 34 0.694 3 0.062 0.062 0.694 90.476 51.701 LGA H 35 H 35 0.977 6 0.070 0.070 1.145 85.952 34.381 LGA L 36 L 36 1.311 4 0.047 0.047 1.480 81.429 40.714 LGA A 37 A 37 0.699 1 0.068 0.068 0.798 95.238 76.190 LGA P 38 P 38 0.966 3 0.241 0.241 2.168 77.381 44.218 LGA K 57 K 57 20.524 5 0.611 0.611 21.153 0.000 0.000 LGA A 58 A 58 14.016 1 0.580 0.580 16.556 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 34 136 136 100.00 282 136 48.23 99 SUMMARY(RMSD_GDC): 4.086 4.025 4.025 25.367 13.861 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 52 99 4.0 31 1.90 28.283 29.420 1.553 LGA_LOCAL RMSD: 1.896 Number of atoms: 31 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.686 Number of assigned atoms: 34 Std_ASGN_ATOMS RMSD: 4.086 Standard rmsd on all 34 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.817760 * X + 0.318013 * Y + 0.479726 * Z + 29.467447 Y_new = 0.514622 * X + 0.030743 * Y + 0.856866 * Z + 10.103061 Z_new = 0.257746 * X + 0.947588 * Y + -0.188797 * Z + -11.219893 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.579902 -0.260689 1.767460 [DEG: 147.8175 -14.9364 101.2680 ] ZXZ: 2.631210 1.760733 0.265577 [DEG: 150.7572 100.8826 15.2164 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0630AL285_1-D1 REMARK 2: T0630-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0630AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 52 99 4.0 31 1.90 29.420 4.09 REMARK ---------------------------------------------------------- MOLECULE T0630AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2hbwA ATOM 17 N GLU 7 -8.345 23.733 10.419 1.00 0.00 N ATOM 18 CA GLU 7 -9.716 24.177 10.609 1.00 0.00 C ATOM 19 C GLU 7 -9.974 25.631 10.190 1.00 0.00 C ATOM 20 O GLU 7 -11.121 26.058 10.211 1.00 0.00 O ATOM 21 N PRO 8 -8.936 26.350 9.802 1.00 0.00 N ATOM 22 CA PRO 8 -9.099 27.754 9.442 1.00 0.00 C ATOM 23 C PRO 8 -10.158 27.907 8.375 1.00 0.00 C ATOM 24 O PRO 8 -10.162 27.195 7.360 1.00 0.00 O ATOM 25 N LYS 9 -10.963 28.922 8.546 1.00 0.00 N ATOM 26 CA LYS 9 -12.010 29.319 7.586 1.00 0.00 C ATOM 27 C LYS 9 -12.002 30.853 7.448 1.00 0.00 C ATOM 28 O LYS 9 -11.502 31.562 8.336 1.00 0.00 O ATOM 29 N PRO 10 -12.513 31.382 6.347 1.00 0.00 N ATOM 30 CA PRO 10 -12.436 32.823 6.132 1.00 0.00 C ATOM 31 C PRO 10 -13.020 33.577 7.333 1.00 0.00 C ATOM 32 O PRO 10 -14.120 33.300 7.807 1.00 0.00 O ATOM 33 N GLY 11 -12.286 34.579 7.766 1.00 0.00 N ATOM 34 CA GLY 11 -12.684 35.399 8.908 1.00 0.00 C ATOM 35 C GLY 11 -12.129 34.971 10.239 1.00 0.00 C ATOM 36 O GLY 11 -12.358 35.653 11.241 1.00 0.00 O ATOM 37 N ASP 12 -11.446 33.843 10.303 1.00 0.00 N ATOM 38 CA ASP 12 -10.682 33.436 11.469 1.00 0.00 C ATOM 39 C ASP 12 -9.370 34.209 11.525 1.00 0.00 C ATOM 40 O ASP 12 -8.890 34.792 10.548 1.00 0.00 O ATOM 41 N LEU 13 -8.806 34.280 12.735 1.00 0.00 N ATOM 42 CA LEU 13 -7.516 34.926 12.981 1.00 0.00 C ATOM 43 C LEU 13 -6.399 33.878 12.946 1.00 0.00 C ATOM 44 O LEU 13 -6.530 32.751 13.428 1.00 0.00 O ATOM 45 N ILE 14 -5.272 34.287 12.364 1.00 0.00 N ATOM 46 N ILE 14 -5.270 34.266 12.355 1.00 0.00 N ATOM 47 CA ILE 14 -4.049 33.514 12.271 1.00 0.00 C ATOM 48 CA ILE 14 -4.084 33.423 12.339 1.00 0.00 C ATOM 49 C ILE 14 -3.039 34.200 13.184 1.00 0.00 C ATOM 50 C ILE 14 -2.943 34.138 13.085 1.00 0.00 C ATOM 51 O ILE 14 -2.841 35.412 13.097 1.00 0.00 O ATOM 52 O ILE 14 -2.611 35.299 12.838 1.00 0.00 O ATOM 53 N GLU 15 -2.393 33.420 14.053 1.00 0.00 N ATOM 54 CA GLU 15 -1.443 33.937 15.010 1.00 0.00 C ATOM 55 C GLU 15 -0.038 33.430 14.754 1.00 0.00 C ATOM 56 O GLU 15 0.172 32.274 14.394 1.00 0.00 O ATOM 57 N ILE 16 0.931 34.300 15.024 1.00 0.00 N ATOM 58 CA ILE 16 2.355 34.059 14.821 1.00 0.00 C ATOM 59 C ILE 16 3.099 34.618 16.020 1.00 0.00 C ATOM 60 O ILE 16 2.636 35.607 16.615 1.00 0.00 O ATOM 61 N PHE 17 4.225 34.032 16.394 1.00 0.00 N ATOM 62 CA PHE 17 4.991 34.608 17.474 1.00 0.00 C ATOM 63 C PHE 17 6.056 33.687 17.983 1.00 0.00 C ATOM 64 O PHE 17 6.629 32.865 17.288 1.00 0.00 O ATOM 65 N ARG 18 6.368 33.884 19.267 1.00 0.00 N ATOM 66 CA ARG 18 7.440 33.225 19.954 1.00 0.00 C ATOM 67 C ARG 18 6.831 32.049 20.703 1.00 0.00 C ATOM 68 O ARG 18 5.638 31.851 20.694 1.00 0.00 O ATOM 69 N PRO 19 6.434 32.055 23.743 1.00 0.00 N ATOM 70 CA PRO 19 5.755 32.688 24.849 1.00 0.00 C ATOM 71 C PRO 19 4.410 33.205 24.418 1.00 0.00 C ATOM 72 O PRO 19 3.452 33.074 25.158 1.00 0.00 O ATOM 73 N PHE 20 4.318 33.829 23.277 1.00 0.00 N ATOM 74 CA PHE 20 3.124 34.590 22.972 1.00 0.00 C ATOM 75 C PHE 20 3.058 34.925 21.497 1.00 0.00 C ATOM 76 O PHE 20 4.052 34.990 20.781 1.00 0.00 O ATOM 77 N TYR 21 1.834 35.182 21.058 1.00 0.00 N ATOM 78 CA TYR 21 1.630 35.770 19.724 1.00 0.00 C ATOM 79 C TYR 21 2.143 37.196 19.719 1.00 0.00 C ATOM 80 O TYR 21 1.829 37.965 20.638 1.00 0.00 O ATOM 81 N ARG 22 2.897 37.525 18.676 1.00 0.00 N ATOM 82 CA ARG 22 3.365 38.869 18.402 1.00 0.00 C ATOM 83 C ARG 22 2.856 39.388 17.080 1.00 0.00 C ATOM 84 O ARG 22 3.132 40.529 16.736 1.00 0.00 O ATOM 85 N HIS 23 2.095 38.606 16.329 1.00 0.00 N ATOM 86 CA HIS 23 1.610 39.010 15.040 1.00 0.00 C ATOM 87 C HIS 23 0.306 38.272 14.788 1.00 0.00 C ATOM 88 O HIS 23 0.076 37.182 15.311 1.00 0.00 O ATOM 89 N TRP 24 -0.555 38.860 13.961 1.00 0.00 N ATOM 90 CA TRP 24 -1.880 38.319 13.657 1.00 0.00 C ATOM 91 C TRP 24 -2.266 38.775 12.251 1.00 0.00 C ATOM 92 O TRP 24 -1.911 39.862 11.800 1.00 0.00 O ATOM 93 N ALA 25 -3.026 37.908 11.573 1.00 0.00 N ATOM 94 CA ALA 25 -3.663 38.238 10.309 1.00 0.00 C ATOM 95 C ALA 25 -5.056 37.632 10.230 1.00 0.00 C ATOM 96 O ALA 25 -5.470 36.856 11.090 1.00 0.00 O ATOM 97 N ILE 26 -5.767 38.021 9.185 1.00 0.00 N ATOM 98 CA ILE 26 -7.163 37.599 8.947 1.00 0.00 C ATOM 99 C ILE 26 -7.193 36.626 7.826 1.00 0.00 C ATOM 100 O ILE 26 -6.777 36.910 6.690 1.00 0.00 O ATOM 101 N TYR 27 -7.635 35.401 8.098 1.00 0.00 N ATOM 102 CA TYR 27 -7.626 34.337 7.096 1.00 0.00 C ATOM 103 C TYR 27 -8.721 34.620 6.049 1.00 0.00 C ATOM 104 O TYR 27 -9.852 34.953 6.330 1.00 0.00 O ATOM 105 N VAL 28 -8.322 34.383 4.789 1.00 0.00 N ATOM 106 CA VAL 28 -9.178 34.606 3.610 1.00 0.00 C ATOM 107 C VAL 28 -9.643 33.320 2.951 1.00 0.00 C ATOM 108 O VAL 28 -10.653 33.346 2.265 1.00 0.00 O ATOM 109 N GLY 29 -8.934 32.242 3.095 1.00 0.00 N ATOM 110 CA GLY 29 -9.167 31.011 2.383 1.00 0.00 C ATOM 111 C GLY 29 -7.963 30.631 1.555 1.00 0.00 C ATOM 112 O GLY 29 -7.107 31.439 1.201 1.00 0.00 O ATOM 113 N ASP 30 -7.893 29.346 1.210 1.00 0.00 N ATOM 114 CA ASP 30 -6.848 28.827 0.310 1.00 0.00 C ATOM 115 C ASP 30 -5.439 29.101 0.841 1.00 0.00 C ATOM 116 O ASP 30 -4.511 29.279 0.069 1.00 0.00 O ATOM 117 N GLY 31 -5.285 29.094 2.159 1.00 0.00 N ATOM 118 CA GLY 31 -4.006 29.366 2.779 1.00 0.00 C ATOM 119 C GLY 31 -3.666 30.858 2.881 1.00 0.00 C ATOM 120 O GLY 31 -2.634 31.154 3.493 1.00 0.00 O ATOM 121 N TYR 32 -4.444 31.724 2.278 1.00 0.00 N ATOM 122 CA TYR 32 -4.140 33.135 2.194 1.00 0.00 C ATOM 123 C TYR 32 -4.670 33.867 3.393 1.00 0.00 C ATOM 124 O TYR 32 -5.760 33.554 3.907 1.00 0.00 O ATOM 125 N VAL 33 -3.973 34.937 3.777 1.00 0.00 N ATOM 126 CA VAL 33 -4.405 35.815 4.845 1.00 0.00 C ATOM 127 C VAL 33 -3.943 37.241 4.530 1.00 0.00 C ATOM 128 O VAL 33 -2.960 37.447 3.803 1.00 0.00 O ATOM 129 N VAL 34 -4.660 38.186 5.099 1.00 0.00 N ATOM 130 CA VAL 34 -4.350 39.600 4.980 1.00 0.00 C ATOM 131 C VAL 34 -3.855 40.099 6.323 1.00 0.00 C ATOM 132 O VAL 34 -4.336 39.717 7.386 1.00 0.00 O ATOM 133 N HIS 35 -2.830 40.959 6.300 1.00 0.00 N ATOM 134 CA HIS 35 -2.233 41.471 7.515 1.00 0.00 C ATOM 135 C HIS 35 -1.477 42.752 7.223 1.00 0.00 C ATOM 136 O HIS 35 -1.053 42.956 6.100 1.00 0.00 O ATOM 137 N LEU 36 -1.270 43.561 8.264 1.00 0.00 N ATOM 138 CA LEU 36 -0.235 44.601 8.191 1.00 0.00 C ATOM 139 C LEU 36 1.032 44.045 8.785 1.00 0.00 C ATOM 140 O LEU 36 0.991 43.407 9.839 1.00 0.00 O ATOM 141 N ALA 37 2.163 44.260 8.115 1.00 0.00 N ATOM 142 CA ALA 37 3.418 43.727 8.582 1.00 0.00 C ATOM 143 C ALA 37 4.533 44.763 8.460 1.00 0.00 C ATOM 144 O ALA 37 4.492 45.642 7.630 1.00 0.00 O ATOM 145 N PRO 38 5.538 44.591 9.321 1.00 0.00 N ATOM 146 CA PRO 38 6.628 45.567 9.442 1.00 0.00 C ATOM 147 C PRO 38 7.678 45.424 8.405 1.00 0.00 C ATOM 148 O PRO 38 7.578 44.820 7.361 1.00 0.00 O ATOM 149 N PRO 39 8.724 46.170 8.636 1.00 0.00 N ATOM 150 CA PRO 39 9.780 46.431 7.678 1.00 0.00 C ATOM 151 C PRO 39 10.759 45.308 7.561 1.00 0.00 C ATOM 152 O PRO 39 11.183 44.935 6.417 1.00 0.00 O ATOM 153 N SER 40 11.171 44.783 8.738 1.00 0.00 N ATOM 154 N SER 40 11.382 44.838 8.629 1.00 0.00 N ATOM 155 CA SER 40 12.280 43.849 8.740 1.00 0.00 C ATOM 156 CA SER 40 12.524 43.962 8.325 1.00 0.00 C ATOM 157 C SER 40 12.016 42.528 7.963 1.00 0.00 C ATOM 158 C SER 40 12.028 42.778 7.492 1.00 0.00 C ATOM 159 O SER 40 12.876 42.003 7.255 1.00 0.00 O ATOM 160 O SER 40 12.479 42.446 6.414 1.00 0.00 O ATOM 161 N GLU 41 10.845 41.971 8.174 1.00 0.00 N ATOM 162 N GLU 41 10.993 42.170 8.030 1.00 0.00 N ATOM 163 CA GLU 41 10.428 40.734 7.523 1.00 0.00 C ATOM 164 CA GLU 41 10.509 40.881 7.576 1.00 0.00 C ATOM 165 C GLU 41 9.212 40.869 6.661 1.00 0.00 C ATOM 166 C GLU 41 9.321 40.963 6.602 1.00 0.00 C ATOM 167 O GLU 41 8.869 39.919 5.959 1.00 0.00 O ATOM 168 O GLU 41 9.144 40.109 5.737 1.00 0.00 O ATOM 169 N VAL 42 8.516 42.013 6.753 1.00 0.00 N ATOM 170 CA VAL 42 7.249 42.172 6.094 1.00 0.00 C ATOM 171 C VAL 42 7.234 43.213 4.982 1.00 0.00 C ATOM 172 O VAL 42 8.234 43.465 4.309 1.00 0.00 O ATOM 173 N ALA 43 6.057 43.775 4.792 1.00 0.00 N ATOM 174 CA ALA 43 5.728 44.590 3.634 1.00 0.00 C ATOM 175 C ALA 43 5.662 46.070 3.958 1.00 0.00 C ATOM 176 O ALA 43 5.358 46.884 3.083 1.00 0.00 O ATOM 177 N GLY 44 5.933 46.463 5.210 1.00 0.00 N ATOM 178 CA GLY 44 5.713 47.828 5.691 1.00 0.00 C ATOM 179 C GLY 44 4.318 48.309 5.338 1.00 0.00 C ATOM 180 O GLY 44 4.133 49.398 4.791 1.00 0.00 O ATOM 181 N ALA 45 3.326 47.523 5.739 1.00 0.00 N ATOM 182 CA ALA 45 1.950 47.841 5.499 1.00 0.00 C ATOM 183 C ALA 45 1.126 46.617 5.172 1.00 0.00 C ATOM 184 O ALA 45 1.564 45.477 5.420 1.00 0.00 O ATOM 185 N GLY 46 -0.057 46.824 4.628 1.00 0.00 N ATOM 186 CA GLY 46 -1.047 45.768 4.452 1.00 0.00 C ATOM 187 C GLY 46 -0.801 45.002 3.177 1.00 0.00 C ATOM 188 O GLY 46 -0.549 45.558 2.098 1.00 0.00 O ATOM 189 N ALA 47 -0.879 43.674 3.251 1.00 0.00 N ATOM 190 CA ALA 47 -0.695 42.822 2.089 1.00 0.00 C ATOM 191 C ALA 47 -1.196 41.401 2.360 1.00 0.00 C ATOM 192 O ALA 47 -1.701 41.106 3.465 1.00 0.00 O ATOM 193 N ALA 48 -1.029 40.583 1.341 1.00 0.00 N ATOM 194 N ALA 48 -1.100 40.551 1.350 1.00 0.00 N ATOM 195 CA ALA 48 -1.494 39.220 1.317 1.00 0.00 C ATOM 196 CA ALA 48 -1.622 39.179 1.384 1.00 0.00 C ATOM 197 C ALA 48 -0.299 38.286 1.408 1.00 0.00 C ATOM 198 C ALA 48 -0.447 38.206 1.316 1.00 0.00 C ATOM 199 O ALA 48 0.706 38.459 0.685 1.00 0.00 O ATOM 200 O ALA 48 0.408 38.288 0.430 1.00 0.00 O ATOM 201 N SER 49 -0.423 37.279 2.275 1.00 0.00 N ATOM 202 CA SER 49 0.554 36.221 2.348 1.00 0.00 C ATOM 203 C SER 49 -0.129 34.860 2.426 1.00 0.00 C ATOM 204 O SER 49 -1.344 34.761 2.559 1.00 0.00 O ATOM 205 N VAL 50 0.663 33.804 2.268 1.00 0.00 N ATOM 206 N VAL 50 0.708 33.819 2.392 1.00 0.00 N ATOM 207 CA VAL 50 0.150 32.440 2.318 1.00 0.00 C ATOM 208 CA VAL 50 0.279 32.424 2.241 1.00 0.00 C ATOM 209 C VAL 50 0.859 31.648 3.383 1.00 0.00 C ATOM 210 C VAL 50 0.920 31.566 3.324 1.00 0.00 C ATOM 211 O VAL 50 2.065 31.818 3.605 1.00 0.00 O ATOM 212 O VAL 50 2.137 31.642 3.530 1.00 0.00 O ATOM 213 N MET 51 0.129 30.730 4.003 1.00 0.00 N ATOM 214 CA MET 51 0.669 29.814 4.998 1.00 0.00 C ATOM 215 C MET 51 1.311 28.608 4.309 1.00 0.00 C ATOM 216 O MET 51 0.791 27.496 4.314 1.00 0.00 O ATOM 217 N SER 52 2.455 28.855 3.694 1.00 0.00 N ATOM 218 CA SER 52 3.181 27.840 2.972 1.00 0.00 C ATOM 219 C SER 52 4.625 28.196 2.841 1.00 0.00 C ATOM 220 O SER 52 4.970 29.345 2.550 1.00 0.00 O ATOM 221 N ALA 53 5.495 27.204 3.006 1.00 0.00 N ATOM 222 N ALA 53 5.490 27.175 2.885 1.00 0.00 N ATOM 223 CA ALA 53 6.901 27.379 2.712 1.00 0.00 C ATOM 224 CA ALA 53 6.900 27.335 2.482 1.00 0.00 C ATOM 225 C ALA 53 7.218 27.589 1.226 1.00 0.00 C ATOM 226 C ALA 53 7.025 27.522 0.981 1.00 0.00 C ATOM 227 O ALA 53 8.325 28.000 0.871 1.00 0.00 O ATOM 228 O ALA 53 8.122 27.776 0.495 1.00 0.00 O ATOM 229 N LEU 54 6.238 27.275 0.382 1.00 0.00 N ATOM 230 N LEU 54 5.930 27.383 0.248 1.00 0.00 N ATOM 231 CA LEU 54 6.260 27.592 -1.079 1.00 0.00 C ATOM 232 CA LEU 54 6.066 27.543 -1.161 1.00 0.00 C ATOM 233 C LEU 54 5.945 29.028 -1.477 1.00 0.00 C ATOM 234 C LEU 54 5.665 28.967 -1.560 1.00 0.00 C ATOM 235 O LEU 54 6.136 29.394 -2.643 1.00 0.00 O ATOM 236 O LEU 54 5.708 29.312 -2.746 1.00 0.00 O ATOM 237 N THR 55 5.411 29.821 -0.562 1.00 0.00 N ATOM 238 CA THR 55 5.174 31.229 -0.799 1.00 0.00 C ATOM 239 C THR 55 6.445 32.018 -1.058 1.00 0.00 C ATOM 240 O THR 55 7.547 31.464 -1.033 1.00 0.00 O ATOM 241 N ASP 56 6.342 33.323 -1.233 1.00 0.00 N ATOM 242 N ASP 56 6.269 33.289 -1.335 1.00 0.00 N ATOM 243 CA ASP 56 7.500 34.191 -1.400 1.00 0.00 C ATOM 244 CA ASP 56 7.365 34.157 -1.530 1.00 0.00 C ATOM 245 C ASP 56 8.259 34.421 -0.072 1.00 0.00 C ATOM 246 C ASP 56 8.090 34.326 -0.203 1.00 0.00 C ATOM 247 O ASP 56 7.921 33.833 0.958 1.00 0.00 O ATOM 248 O ASP 56 7.688 33.847 0.859 1.00 0.00 O ATOM 249 N LYS 57 9.291 35.258 -0.064 1.00 0.00 N ATOM 250 N LYS 57 9.222 35.009 -0.256 1.00 0.00 N ATOM 251 CA LYS 57 10.183 35.282 1.083 1.00 0.00 C ATOM 252 CA LYS 57 10.062 35.200 0.961 1.00 0.00 C ATOM 253 C LYS 57 9.428 35.822 2.301 1.00 0.00 C ATOM 254 C LYS 57 9.318 35.723 2.215 1.00 0.00 C ATOM 255 O LYS 57 9.699 35.414 3.408 1.00 0.00 O ATOM 256 O LYS 57 9.494 35.198 3.299 1.00 0.00 O ATOM 257 N ALA 58 8.536 36.790 2.074 1.00 0.00 N ATOM 258 CA ALA 58 7.746 37.338 3.184 1.00 0.00 C ATOM 259 C ALA 58 6.856 36.244 3.776 1.00 0.00 C ATOM 260 O ALA 58 6.804 36.043 4.980 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 144 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 55.38 74.6 63 32.6 193 ARMSMC SECONDARY STRUCTURE . . 43.57 78.6 42 38.9 108 ARMSMC SURFACE . . . . . . . . 85.68 48.0 25 20.7 121 ARMSMC BURIED . . . . . . . . 15.99 92.1 38 52.8 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 84 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 75 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 37 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 18 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.59 (Number of atoms: 36) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.59 36 36.4 99 CRMSCA CRN = ALL/NP . . . . . 0.1275 CRMSCA SECONDARY STRUCTURE . . 3.32 22 40.7 54 CRMSCA SURFACE . . . . . . . . 5.84 15 23.8 63 CRMSCA BURIED . . . . . . . . 3.43 21 58.3 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.50 144 29.4 489 CRMSMC SECONDARY STRUCTURE . . 3.28 88 32.7 269 CRMSMC SURFACE . . . . . . . . 5.53 60 19.3 311 CRMSMC BURIED . . . . . . . . 3.58 84 47.2 178 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 417 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 351 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 252 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 281 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 136 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.50 144 17.7 813 CRMSALL SECONDARY STRUCTURE . . 3.28 88 18.8 468 CRMSALL SURFACE . . . . . . . . 5.53 60 11.3 533 CRMSALL BURIED . . . . . . . . 3.58 84 30.0 280 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.736 1.000 0.500 36 36.4 99 ERRCA SECONDARY STRUCTURE . . 2.967 1.000 0.500 22 40.7 54 ERRCA SURFACE . . . . . . . . 4.763 1.000 0.500 15 23.8 63 ERRCA BURIED . . . . . . . . 3.002 1.000 0.500 21 58.3 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.677 1.000 0.500 144 29.4 489 ERRMC SECONDARY STRUCTURE . . 2.896 1.000 0.500 88 32.7 269 ERRMC SURFACE . . . . . . . . 4.555 1.000 0.500 60 19.3 311 ERRMC BURIED . . . . . . . . 3.050 1.000 0.500 84 47.2 178 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 417 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 351 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 252 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 281 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 136 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.677 1.000 0.500 144 17.7 813 ERRALL SECONDARY STRUCTURE . . 2.896 1.000 0.500 88 18.8 468 ERRALL SURFACE . . . . . . . . 4.555 1.000 0.500 60 11.3 533 ERRALL BURIED . . . . . . . . 3.050 1.000 0.500 84 30.0 280 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 2 7 17 29 33 34 99 DISTCA CA (P) 2.02 7.07 17.17 29.29 33.33 99 DISTCA CA (RMS) 0.94 1.38 2.09 2.98 3.67 DISTCA ALL (N) 4 35 69 113 133 136 813 DISTALL ALL (P) 0.49 4.31 8.49 13.90 16.36 813 DISTALL ALL (RMS) 0.93 1.46 2.03 2.90 3.81 DISTALL END of the results output