####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 56 ( 224), selected 56 , name T0629TS328_1-D1 # Molecule2: number of CA atoms 57 ( 436), selected 56 , name T0629-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0629TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 18 - 40 5.00 14.22 LCS_AVERAGE: 32.42 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 24 - 34 1.99 19.01 LONGEST_CONTINUOUS_SEGMENT: 11 25 - 35 1.93 18.95 LCS_AVERAGE: 11.53 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 26 - 31 0.81 22.31 LONGEST_CONTINUOUS_SEGMENT: 6 27 - 32 1.00 20.76 LONGEST_CONTINUOUS_SEGMENT: 6 28 - 33 0.92 20.59 LONGEST_CONTINUOUS_SEGMENT: 6 29 - 34 0.99 20.29 LCS_AVERAGE: 7.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 56 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 5 5 15 4 4 6 7 8 8 8 10 11 13 13 15 16 19 21 22 23 25 25 26 LCS_GDT S 2 S 2 5 5 15 4 4 6 7 8 8 8 10 11 14 14 15 17 19 21 24 25 26 28 30 LCS_GDT Y 3 Y 3 5 5 15 4 4 6 7 8 8 8 10 11 14 15 16 18 19 21 25 25 28 29 30 LCS_GDT P 4 P 4 5 5 17 4 4 5 7 8 9 9 10 11 14 14 16 16 19 21 24 25 26 26 30 LCS_GDT I 5 I 5 5 6 17 3 3 6 7 8 9 9 10 11 14 14 16 17 19 21 24 25 26 28 30 LCS_GDT G 6 G 6 5 7 17 3 3 5 5 8 9 10 11 13 15 17 17 18 20 23 25 27 30 32 33 LCS_GDT A 7 A 7 5 7 17 4 4 5 6 7 9 9 10 11 15 17 17 21 24 27 28 29 32 32 33 LCS_GDT P 8 P 8 5 7 17 4 4 5 6 7 9 9 11 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT I 9 I 9 5 7 17 4 4 5 6 7 9 9 10 11 13 13 17 20 23 25 27 29 32 32 33 LCS_GDT P 10 P 10 5 7 17 4 4 5 6 7 9 9 10 11 13 13 16 16 18 21 24 27 30 30 32 LCS_GDT W 11 W 11 5 7 17 3 4 5 6 7 9 9 10 11 13 13 16 16 16 19 23 25 27 29 32 LCS_GDT P 12 P 12 4 7 17 3 4 4 6 7 9 9 10 11 13 13 16 16 16 17 21 23 26 28 32 LCS_GDT S 13 S 13 3 6 17 3 3 4 4 6 7 8 10 11 13 13 16 16 16 18 23 25 27 29 32 LCS_GDT D 14 D 14 4 6 17 3 4 4 6 7 7 8 9 10 11 13 16 16 16 17 18 20 26 26 29 LCS_GDT S 15 S 15 4 6 17 3 4 4 6 7 7 8 9 10 11 13 16 16 16 19 23 25 27 29 32 LCS_GDT V 16 V 16 4 6 17 3 4 4 5 5 6 8 9 10 11 13 16 16 16 19 23 25 27 29 32 LCS_GDT P 17 P 17 4 6 17 3 4 6 7 8 8 8 9 10 11 13 16 17 19 22 25 28 30 31 33 LCS_GDT A 18 A 18 4 6 23 3 3 4 6 7 7 8 9 10 12 15 16 20 24 26 27 29 32 32 33 LCS_GDT G 19 G 19 4 6 23 3 3 4 6 7 7 8 9 11 13 17 19 22 24 27 28 29 32 32 33 LCS_GDT F 20 F 20 4 6 23 3 3 4 5 6 8 9 10 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT A 21 A 21 4 6 23 3 3 4 5 7 8 9 11 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT L 22 L 22 4 6 23 3 3 4 5 8 9 10 11 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT M 23 M 23 3 7 23 3 3 4 5 7 9 10 11 13 15 17 17 20 23 27 28 29 32 32 33 LCS_GDT E 24 E 24 4 11 23 4 4 5 6 8 9 12 13 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT G 25 G 25 4 11 23 4 4 5 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT Q 26 Q 26 6 11 23 4 6 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT T 27 T 27 6 11 23 4 6 7 10 10 10 11 13 14 14 17 19 22 24 27 28 29 32 32 33 LCS_GDT F 28 F 28 6 11 23 4 6 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT D 29 D 29 6 11 23 4 6 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT K 30 K 30 6 11 23 3 6 7 10 10 10 12 13 14 14 17 19 21 24 27 28 29 32 32 33 LCS_GDT S 31 S 31 6 11 23 4 6 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT A 32 A 32 6 11 23 4 5 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT Y 33 Y 33 6 11 23 4 5 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT P 34 P 34 6 11 23 4 4 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT K 35 K 35 4 11 23 3 4 5 6 8 10 11 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT L 36 L 36 4 8 23 3 4 4 6 7 9 11 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT A 37 A 37 4 6 23 3 4 4 4 6 6 9 12 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT V 38 V 38 4 5 23 3 4 4 6 8 9 12 13 14 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT A 39 A 39 4 5 23 3 4 4 5 8 10 12 13 14 14 17 19 22 24 27 28 29 32 32 33 LCS_GDT Y 40 Y 40 4 5 23 3 4 4 5 7 9 10 12 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT P 41 P 41 4 5 21 1 4 4 5 7 8 9 12 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT S 42 S 42 4 5 21 0 4 4 5 8 9 10 12 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT G 43 G 43 4 4 21 3 4 4 4 5 6 6 8 9 12 14 15 16 19 20 25 25 28 32 33 LCS_GDT V 44 V 44 4 4 21 3 4 4 4 4 6 6 7 10 13 14 17 19 20 21 24 25 28 32 33 LCS_GDT I 45 I 45 3 4 21 3 3 3 3 5 6 6 7 7 10 11 19 20 22 22 24 28 31 32 33 LCS_GDT P 46 P 46 3 3 21 3 3 3 3 5 6 7 11 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT D 47 D 47 3 3 21 3 3 3 3 4 6 8 11 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT M 48 M 48 3 3 13 3 3 3 4 5 6 8 11 13 15 17 19 22 24 27 28 29 32 32 33 LCS_GDT R 49 R 49 3 3 13 3 3 3 3 3 5 6 11 13 15 17 18 22 23 25 28 29 32 32 33 LCS_GDT F 209 F 209 5 5 8 4 5 6 7 8 8 8 8 9 10 11 12 14 15 17 19 23 26 28 31 LCS_GDT N 210 N 210 5 5 7 4 5 5 5 8 8 8 8 9 10 11 12 16 16 17 18 23 26 28 31 LCS_GDT Y 211 Y 211 5 5 7 4 5 5 5 5 5 5 5 7 7 7 12 14 15 16 17 20 21 23 31 LCS_GDT I 212 I 212 5 5 7 4 5 5 5 5 5 5 5 7 10 10 11 14 17 17 20 24 27 28 31 LCS_GDT V 213 V 213 5 5 7 3 5 5 5 5 5 5 5 7 10 10 11 13 17 17 18 18 20 22 25 LCS_GDT R 214 R 214 3 3 7 3 3 3 3 3 4 5 5 7 10 10 11 13 17 17 18 18 20 22 25 LCS_GDT L 215 L 215 3 3 7 3 3 3 3 3 4 5 5 7 10 10 12 12 17 17 18 18 20 22 25 LCS_AVERAGE LCS_A: 17.25 ( 7.80 11.53 32.42 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 7 10 10 10 12 13 14 15 17 19 22 24 27 28 29 32 32 33 GDT PERCENT_AT 7.02 10.53 12.28 17.54 17.54 17.54 21.05 22.81 24.56 26.32 29.82 33.33 38.60 42.11 47.37 49.12 50.88 56.14 56.14 57.89 GDT RMS_LOCAL 0.13 0.81 0.84 1.35 1.35 1.35 2.53 2.57 2.94 3.46 3.79 4.35 4.92 5.12 5.51 5.63 5.76 6.14 6.14 6.32 GDT RMS_ALL_AT 15.21 22.31 20.02 19.65 19.65 19.65 16.12 16.26 16.56 14.69 14.81 16.38 13.50 13.50 13.21 13.20 13.18 13.16 13.16 13.18 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 1 S 1 28.690 2 0.600 0.600 31.226 0.000 0.000 LGA S 2 S 2 32.029 2 0.021 0.021 32.474 0.000 0.000 LGA Y 3 Y 3 27.356 8 0.133 0.133 28.479 0.000 0.000 LGA P 4 P 4 24.777 3 0.673 0.673 26.148 0.000 0.000 LGA I 5 I 5 19.980 4 0.626 0.626 22.162 0.000 0.000 LGA G 6 G 6 17.029 0 0.641 0.641 17.776 0.000 0.000 LGA A 7 A 7 15.401 1 0.052 0.052 16.166 0.000 0.000 LGA P 8 P 8 13.321 3 0.060 0.060 13.818 0.000 0.000 LGA I 9 I 9 12.598 4 0.077 0.077 13.903 0.000 0.000 LGA P 10 P 10 14.615 3 0.165 0.165 14.757 0.000 0.000 LGA W 11 W 11 16.183 10 0.620 0.620 17.873 0.000 0.000 LGA P 12 P 12 18.379 3 0.528 0.528 18.379 0.000 0.000 LGA S 13 S 13 16.272 2 0.534 0.534 16.885 0.000 0.000 LGA D 14 D 14 19.459 4 0.603 0.603 19.459 0.000 0.000 LGA S 15 S 15 15.894 2 0.171 0.171 17.073 0.000 0.000 LGA V 16 V 16 15.658 3 0.623 0.623 15.658 0.000 0.000 LGA P 17 P 17 13.887 3 0.075 0.075 13.887 0.119 0.068 LGA A 18 A 18 9.996 1 0.187 0.187 12.070 0.119 0.095 LGA G 19 G 19 10.068 0 0.745 0.745 10.150 0.476 0.476 LGA F 20 F 20 11.581 7 0.116 0.116 11.581 0.000 0.000 LGA A 21 A 21 8.456 1 0.104 0.104 11.659 1.310 1.048 LGA L 22 L 22 11.581 4 0.684 0.684 11.581 0.000 0.000 LGA M 23 M 23 9.837 4 0.338 0.338 10.390 5.119 2.560 LGA E 24 E 24 3.507 5 0.216 0.216 6.005 55.833 24.815 LGA G 25 G 25 0.820 0 0.060 0.060 2.415 75.357 75.357 LGA Q 26 Q 26 1.648 5 0.077 0.077 3.184 71.429 31.746 LGA T 27 T 27 2.755 3 0.242 0.242 2.864 65.000 37.143 LGA F 28 F 28 1.075 7 0.078 0.078 3.372 71.429 25.974 LGA D 29 D 29 2.106 4 0.188 0.188 2.106 75.119 37.560 LGA K 30 K 30 3.558 5 0.631 0.631 4.564 45.476 20.212 LGA S 31 S 31 1.268 2 0.383 0.383 1.731 79.405 52.937 LGA A 32 A 32 1.933 1 0.158 0.158 3.118 67.262 53.810 LGA Y 33 Y 33 3.461 8 0.391 0.391 4.076 46.905 15.635 LGA P 34 P 34 3.968 3 0.067 0.067 5.058 36.071 20.612 LGA K 35 K 35 6.408 5 0.424 0.424 7.480 17.619 7.831 LGA L 36 L 36 6.393 4 0.668 0.668 6.569 16.190 8.095 LGA A 37 A 37 6.671 1 0.558 0.558 6.692 18.571 14.857 LGA V 38 V 38 2.273 3 0.081 0.081 4.576 54.524 31.156 LGA A 39 A 39 2.504 1 0.184 0.184 6.191 43.333 34.667 LGA Y 40 Y 40 9.130 8 0.268 0.268 9.749 5.119 1.706 LGA P 41 P 41 12.550 3 0.669 0.669 15.557 0.000 0.000 LGA S 42 S 42 14.647 2 0.641 0.641 16.920 0.000 0.000 LGA G 43 G 43 16.076 0 0.661 0.661 16.076 0.000 0.000 LGA V 44 V 44 15.768 3 0.672 0.672 16.340 0.000 0.000 LGA I 45 I 45 13.975 4 0.611 0.611 14.511 0.000 0.000 LGA P 46 P 46 13.402 3 0.652 0.652 13.402 0.000 0.000 LGA D 47 D 47 10.330 4 0.604 0.604 11.834 0.000 0.000 LGA M 48 M 48 11.362 4 0.037 0.037 13.810 0.000 0.000 LGA R 49 R 49 15.171 7 0.613 0.613 19.555 0.000 0.000 LGA F 209 F 209 33.993 7 0.033 0.033 36.322 0.000 0.000 LGA N 210 N 210 29.815 4 0.151 0.151 30.982 0.000 0.000 LGA Y 211 Y 211 29.539 8 0.121 0.121 29.781 0.000 0.000 LGA I 212 I 212 24.776 4 0.631 0.631 26.512 0.000 0.000 LGA V 213 V 213 26.826 3 0.674 0.674 27.050 0.000 0.000 LGA R 214 R 214 28.069 7 0.637 0.637 28.069 0.000 0.000 LGA L 215 L 215 22.326 4 0.297 0.297 24.191 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 56 224 224 100.00 430 224 52.09 57 SUMMARY(RMSD_GDC): 12.976 12.890 12.890 14.944 8.743 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 56 57 4.0 13 2.57 25.000 20.780 0.486 LGA_LOCAL RMSD: 2.572 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.263 Number of assigned atoms: 56 Std_ASGN_ATOMS RMSD: 12.976 Standard rmsd on all 56 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.799016 * X + -0.554580 * Y + -0.232413 * Z + 94.228546 Y_new = 0.019621 * X + 0.362258 * Y + -0.931871 * Z + 49.265621 Z_new = 0.600990 * X + -0.749140 * Y + -0.278568 * Z + -38.282848 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.117041 -0.644739 -1.926803 [DEG: 178.5933 -36.9408 -110.3977 ] ZXZ: -0.244418 1.853099 2.465487 [DEG: -14.0041 106.1748 141.2620 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0629TS328_1-D1 REMARK 2: T0629-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0629TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 56 57 4.0 13 2.57 20.780 12.98 REMARK ---------------------------------------------------------- MOLECULE T0629TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0629 REMARK MODEL 1 REMARK PARENT 1hne_E ATOM 1 N SER 1 44.111 -16.713 -23.503 1.00 3.00 N ATOM 2 CA SER 1 44.867 -16.043 -22.454 1.00 3.00 C ATOM 3 C SER 1 46.346 -16.065 -22.653 1.00 3.00 C ATOM 4 O SER 1 47.068 -15.864 -21.678 1.00 3.00 O ATOM 5 N SER 2 46.819 -16.201 -23.891 1.00 3.00 N ATOM 6 CA SER 2 48.240 -16.191 -24.215 1.00 3.00 C ATOM 7 C SER 2 48.877 -14.830 -23.984 1.00 3.00 C ATOM 8 O SER 2 50.110 -14.757 -23.746 1.00 3.00 O ATOM 9 N TYR 3 48.089 -13.771 -24.073 1.00 3.00 N ATOM 10 CA TYR 3 48.587 -12.387 -23.939 1.00 3.00 C ATOM 11 C TYR 3 47.757 -11.673 -22.898 1.00 3.00 C ATOM 12 O TYR 3 46.912 -10.830 -23.269 1.00 3.00 O ATOM 13 N PRO 4 48.051 -11.937 -21.630 1.00 3.00 N ATOM 14 CA PRO 4 47.211 -11.432 -20.520 1.00 3.00 C ATOM 15 C PRO 4 47.196 -9.957 -20.294 1.00 3.00 C ATOM 16 O PRO 4 46.395 -9.499 -19.443 1.00 3.00 O ATOM 17 N ILE 5 48.032 -9.256 -21.012 1.00 3.00 N ATOM 18 CA ILE 5 48.069 -7.781 -20.923 1.00 3.00 C ATOM 19 C ILE 5 47.115 -7.193 -21.974 1.00 3.00 C ATOM 20 O ILE 5 46.901 -5.993 -21.923 1.00 3.00 O ATOM 21 N GLY 6 46.534 -8.019 -22.820 1.00 3.00 N ATOM 22 CA GLY 6 45.628 -7.518 -23.891 1.00 3.00 C ATOM 23 C GLY 6 44.311 -7.047 -23.309 1.00 3.00 C ATOM 24 O GLY 6 43.663 -7.742 -22.517 1.00 3.00 O ATOM 25 N ALA 7 43.886 -5.824 -23.699 1.00 3.00 N ATOM 26 CA ALA 7 42.623 -5.223 -23.213 1.00 3.00 C ATOM 27 C ALA 7 41.665 -4.894 -24.367 1.00 3.00 C ATOM 28 O ALA 7 42.173 -4.521 -25.438 1.00 3.00 O ATOM 29 N PRO 8 40.404 -4.911 -24.050 1.00 3.00 N ATOM 30 CA PRO 8 39.358 -4.533 -25.048 1.00 3.00 C ATOM 31 C PRO 8 38.662 -3.282 -24.530 1.00 3.00 C ATOM 32 O PRO 8 38.183 -3.353 -23.371 1.00 3.00 O ATOM 33 N ILE 9 38.547 -2.228 -25.323 1.00 3.00 N ATOM 34 CA ILE 9 37.797 -1.007 -24.919 1.00 3.00 C ATOM 35 C ILE 9 36.420 -1.149 -25.567 1.00 3.00 C ATOM 36 O ILE 9 36.379 -1.401 -26.796 1.00 3.00 O ATOM 37 N PRO 10 35.338 -1.010 -24.798 1.00 3.00 N ATOM 38 CA PRO 10 33.972 -1.211 -25.339 1.00 3.00 C ATOM 39 C PRO 10 33.063 -0.028 -25.043 1.00 3.00 C ATOM 40 O PRO 10 33.315 0.674 -24.055 1.00 3.00 O ATOM 41 N TRP 11 32.027 0.155 -25.864 1.00 3.00 N ATOM 42 CA TRP 11 31.064 1.258 -25.657 1.00 3.00 C ATOM 43 C TRP 11 29.718 0.835 -25.133 1.00 3.00 C ATOM 44 O TRP 11 29.115 1.518 -24.247 1.00 3.00 O ATOM 45 N PRO 12 29.238 -0.250 -25.644 1.00 3.00 N ATOM 46 CA PRO 12 27.931 -0.841 -25.172 1.00 3.00 C ATOM 47 C PRO 12 28.480 -2.100 -24.473 1.00 3.00 C ATOM 48 O PRO 12 28.807 -2.223 -23.293 1.00 3.00 O ATOM 49 N SER 13 28.716 -3.018 -25.340 1.00 3.00 N ATOM 50 CA SER 13 29.272 -4.346 -25.194 1.00 3.00 C ATOM 51 C SER 13 29.849 -4.582 -26.625 1.00 3.00 C ATOM 52 O SER 13 29.873 -5.703 -27.116 1.00 3.00 O ATOM 53 N ASP 14 30.214 -3.431 -27.197 1.00 3.00 N ATOM 54 CA ASP 14 30.817 -3.453 -28.529 1.00 3.00 C ATOM 55 C ASP 14 32.258 -2.920 -28.445 1.00 3.00 C ATOM 56 O ASP 14 32.478 -1.779 -28.104 1.00 3.00 O ATOM 57 N SER 15 33.145 -3.825 -28.795 1.00 3.00 N ATOM 58 CA SER 15 34.608 -3.537 -28.852 1.00 3.00 C ATOM 59 C SER 15 34.869 -2.464 -29.876 1.00 3.00 C ATOM 60 O SER 15 34.262 -2.559 -31.020 1.00 3.00 O ATOM 61 N VAL 16 35.736 -1.514 -29.603 1.00 3.00 N ATOM 62 CA VAL 16 36.054 -0.502 -30.650 1.00 3.00 C ATOM 63 C VAL 16 37.552 -0.241 -30.770 1.00 3.00 C ATOM 64 O VAL 16 37.964 0.394 -31.744 1.00 3.00 O ATOM 65 N PRO 17 38.307 -0.620 -29.746 1.00 3.00 N ATOM 66 CA PRO 17 39.772 -0.352 -29.777 1.00 3.00 C ATOM 67 C PRO 17 40.436 -1.288 -28.779 1.00 3.00 C ATOM 68 O PRO 17 39.722 -1.675 -27.839 1.00 3.00 O ATOM 69 N ALA 18 41.737 -1.548 -29.012 1.00 3.00 N ATOM 70 CA ALA 18 42.417 -2.394 -27.986 1.00 3.00 C ATOM 71 C ALA 18 43.192 -1.428 -27.089 1.00 3.00 C ATOM 72 O ALA 18 43.119 -0.171 -27.167 1.00 3.00 O ATOM 73 N GLY 19 43.905 -2.041 -26.150 1.00 3.00 N ATOM 74 CA GLY 19 44.734 -1.342 -25.178 1.00 3.00 C ATOM 75 C GLY 19 45.692 -2.357 -24.538 1.00 3.00 C ATOM 76 O GLY 19 45.496 -3.554 -24.790 1.00 3.00 O ATOM 77 N PHE 20 46.612 -1.848 -23.748 1.00 3.00 N ATOM 78 CA PHE 20 47.585 -2.733 -23.050 1.00 3.00 C ATOM 79 C PHE 20 47.604 -2.420 -21.542 1.00 3.00 C ATOM 80 O PHE 20 47.628 -1.228 -21.222 1.00 3.00 O ATOM 81 N ALA 21 47.589 -3.442 -20.706 1.00 3.00 N ATOM 82 CA ALA 21 47.676 -3.173 -19.224 1.00 3.00 C ATOM 83 C ALA 21 49.164 -2.905 -18.941 1.00 3.00 C ATOM 84 O ALA 21 50.054 -3.765 -19.199 1.00 3.00 O ATOM 85 N LEU 22 49.413 -1.745 -18.348 1.00 3.00 N ATOM 86 CA LEU 22 50.821 -1.292 -18.088 1.00 3.00 C ATOM 87 C LEU 22 51.135 -1.218 -16.610 1.00 3.00 C ATOM 88 O LEU 22 52.300 -1.086 -16.221 1.00 3.00 O ATOM 89 N MET 23 50.084 -1.292 -15.825 1.00 3.00 N ATOM 90 CA MET 23 50.156 -1.250 -14.335 1.00 3.00 C ATOM 91 C MET 23 48.815 -1.810 -13.942 1.00 3.00 C ATOM 92 O MET 23 47.940 -1.942 -14.833 1.00 3.00 O ATOM 93 N GLU 24 48.616 -2.114 -12.688 1.00 3.00 N ATOM 94 CA GLU 24 47.331 -2.665 -12.233 1.00 3.00 C ATOM 95 C GLU 24 46.203 -1.681 -12.444 1.00 3.00 C ATOM 96 O GLU 24 45.075 -2.178 -12.579 1.00 3.00 O ATOM 97 N GLY 25 46.490 -0.383 -12.412 1.00 3.00 N ATOM 98 CA GLY 25 45.388 0.608 -12.550 1.00 3.00 C ATOM 99 C GLY 25 45.527 1.543 -13.739 1.00 3.00 C ATOM 100 O GLY 25 44.916 2.648 -13.704 1.00 3.00 O ATOM 101 N GLN 26 46.307 1.163 -14.716 1.00 3.00 N ATOM 102 CA GLN 26 46.528 1.974 -15.928 1.00 3.00 C ATOM 103 C GLN 26 46.653 1.078 -17.183 1.00 3.00 C ATOM 104 O GLN 26 47.376 0.079 -17.219 1.00 3.00 O ATOM 105 N THR 27 46.043 1.577 -18.231 1.00 3.00 N ATOM 106 CA THR 27 46.018 0.921 -19.554 1.00 3.00 C ATOM 107 C THR 27 45.170 2.100 -20.057 1.00 3.00 C ATOM 108 O THR 27 44.432 2.608 -19.201 1.00 3.00 O ATOM 109 N PHE 28 45.363 2.560 -21.240 1.00 3.00 N ATOM 110 CA PHE 28 44.675 3.706 -21.867 1.00 3.00 C ATOM 111 C PHE 28 44.789 3.352 -23.360 1.00 3.00 C ATOM 112 O PHE 28 45.613 2.488 -23.713 1.00 3.00 O ATOM 113 N ASP 29 44.025 3.929 -24.124 1.00 3.00 N ATOM 114 CA ASP 29 44.208 3.866 -25.583 1.00 3.00 C ATOM 115 C ASP 29 44.304 5.276 -26.151 1.00 3.00 C ATOM 116 O ASP 29 43.782 6.228 -25.550 1.00 3.00 O ATOM 117 N LYS 30 44.972 5.374 -27.273 1.00 3.00 N ATOM 118 CA LYS 30 45.135 6.659 -27.984 1.00 3.00 C ATOM 119 C LYS 30 44.244 6.698 -29.221 1.00 3.00 C ATOM 120 O LYS 30 43.832 5.648 -29.748 1.00 3.00 O ATOM 121 N SER 31 44.007 7.940 -29.618 1.00 3.00 N ATOM 122 CA SER 31 43.198 8.309 -30.786 1.00 3.00 C ATOM 123 C SER 31 42.075 7.298 -30.983 1.00 3.00 C ATOM 124 O SER 31 41.714 6.975 -32.120 1.00 3.00 O ATOM 125 N ALA 32 41.526 6.885 -29.793 1.00 3.00 N ATOM 126 CA ALA 32 40.430 5.861 -29.861 1.00 3.00 C ATOM 127 C ALA 32 39.496 6.579 -28.891 1.00 3.00 C ATOM 128 O ALA 32 38.316 6.170 -28.799 1.00 3.00 O ATOM 129 N TYR 33 40.001 7.574 -28.229 1.00 3.00 N ATOM 130 CA TYR 33 39.231 8.273 -27.154 1.00 3.00 C ATOM 131 C TYR 33 38.929 9.708 -27.482 1.00 3.00 C ATOM 132 O TYR 33 38.191 10.379 -26.751 1.00 3.00 O ATOM 133 N PRO 34 39.381 10.200 -28.623 1.00 3.00 N ATOM 134 CA PRO 34 39.232 11.525 -29.144 1.00 3.00 C ATOM 135 C PRO 34 37.813 12.068 -29.187 1.00 3.00 C ATOM 136 O PRO 34 37.616 13.190 -28.638 1.00 3.00 O ATOM 137 N LYS 35 36.929 11.366 -29.843 1.00 3.00 N ATOM 138 CA LYS 35 35.516 11.834 -29.972 1.00 3.00 C ATOM 139 C LYS 35 34.594 10.745 -29.445 1.00 3.00 C ATOM 140 O LYS 35 33.633 10.294 -30.124 1.00 3.00 O ATOM 141 N LEU 36 34.931 10.282 -28.258 1.00 3.00 N ATOM 142 CA LEU 36 34.122 9.204 -27.624 1.00 3.00 C ATOM 143 C LEU 36 33.690 9.733 -26.264 1.00 3.00 C ATOM 144 O LEU 36 34.358 10.650 -25.748 1.00 3.00 O ATOM 145 N ALA 37 32.599 9.149 -25.789 1.00 3.00 N ATOM 146 CA ALA 37 32.079 9.546 -24.451 1.00 3.00 C ATOM 147 C ALA 37 32.846 8.706 -23.430 1.00 3.00 C ATOM 148 O ALA 37 32.384 7.596 -23.114 1.00 3.00 O ATOM 149 N VAL 38 33.962 9.223 -22.974 1.00 3.00 N ATOM 150 CA VAL 38 34.863 8.556 -22.047 1.00 3.00 C ATOM 151 C VAL 38 34.209 7.923 -20.828 1.00 3.00 C ATOM 152 O VAL 38 34.614 6.806 -20.457 1.00 3.00 O ATOM 153 N ALA 39 33.258 8.633 -20.267 1.00 3.00 N ATOM 154 CA ALA 39 32.551 8.128 -19.076 1.00 3.00 C ATOM 155 C ALA 39 31.668 6.960 -19.457 1.00 3.00 C ATOM 156 O ALA 39 31.056 6.344 -18.538 1.00 3.00 O ATOM 157 N TYR 40 31.608 6.615 -20.746 1.00 3.00 N ATOM 158 CA TYR 40 30.790 5.458 -21.182 1.00 3.00 C ATOM 159 C TYR 40 31.622 4.460 -20.368 1.00 3.00 C ATOM 160 O TYR 40 32.794 4.222 -20.664 1.00 3.00 O ATOM 161 N PRO 41 31.013 3.893 -19.335 1.00 3.00 N ATOM 162 CA PRO 41 31.698 2.936 -18.478 1.00 3.00 C ATOM 163 C PRO 41 32.236 1.744 -19.276 1.00 3.00 C ATOM 164 O PRO 41 31.667 1.326 -20.280 1.00 3.00 O ATOM 165 N SER 42 33.348 1.222 -18.781 1.00 3.00 N ATOM 166 CA SER 42 34.042 0.115 -19.395 1.00 3.00 C ATOM 167 C SER 42 33.331 -1.201 -19.203 1.00 3.00 C ATOM 168 O SER 42 33.041 -1.575 -18.084 1.00 3.00 O ATOM 169 N GLY 43 33.056 -1.915 -20.276 1.00 9.00 N ATOM 170 CA GLY 43 32.430 -3.213 -20.116 1.00 9.00 C ATOM 171 C GLY 43 33.498 -4.147 -19.517 1.00 9.00 C ATOM 172 O GLY 43 34.664 -3.779 -19.442 1.00 9.00 O ATOM 173 N VAL 44 33.104 -5.338 -19.035 1.00 3.00 N ATOM 174 CA VAL 44 34.120 -6.233 -18.468 1.00 3.00 C ATOM 175 C VAL 44 34.983 -7.030 -19.438 1.00 3.00 C ATOM 176 O VAL 44 36.131 -7.337 -19.110 1.00 3.00 O ATOM 177 N ILE 45 34.472 -7.408 -20.611 1.00 3.00 N ATOM 178 CA ILE 45 35.322 -8.169 -21.542 1.00 3.00 C ATOM 179 C ILE 45 36.504 -7.281 -21.898 1.00 3.00 C ATOM 180 O ILE 45 37.605 -7.762 -22.095 1.00 3.00 O ATOM 181 N PRO 46 36.260 -5.984 -21.942 1.00 9.00 N ATOM 182 CA PRO 46 37.270 -4.984 -22.256 1.00 9.00 C ATOM 183 C PRO 46 38.109 -4.602 -21.047 1.00 9.00 C ATOM 184 O PRO 46 39.277 -4.219 -21.198 1.00 9.00 O ATOM 185 N ASP 47 37.537 -4.645 -19.860 1.00 9.00 N ATOM 186 CA ASP 47 38.292 -4.293 -18.677 1.00 9.00 C ATOM 187 C ASP 47 39.289 -5.393 -18.441 1.00 9.00 C ATOM 188 O ASP 47 40.380 -5.146 -17.940 1.00 9.00 O ATOM 189 N MET 48 38.926 -6.618 -18.822 1.00 3.00 N ATOM 190 CA MET 48 39.796 -7.779 -18.609 1.00 3.00 C ATOM 191 C MET 48 40.542 -8.317 -19.814 1.00 3.00 C ATOM 192 O MET 48 41.360 -9.232 -19.675 1.00 3.00 O ATOM 193 N ARG 49 40.246 -7.813 -21.007 1.00 3.00 N ATOM 194 CA ARG 49 40.904 -8.315 -22.185 1.00 3.00 C ATOM 195 C ARG 49 40.180 -9.504 -22.770 1.00 3.00 C ATOM 196 O ARG 49 40.004 -9.623 -23.993 1.00 3.00 O ATOM 833 N PHE 209 52.435 2.245 -36.293 1.00 3.00 N ATOM 834 CA PHE 209 52.256 2.133 -34.835 1.00 3.00 C ATOM 835 C PHE 209 52.925 3.352 -34.170 1.00 3.00 C ATOM 836 O PHE 209 53.944 3.888 -34.730 1.00 3.00 O ATOM 837 N ASN 210 52.374 3.722 -33.010 1.00 3.00 N ATOM 838 CA ASN 210 53.000 4.794 -32.197 1.00 3.00 C ATOM 839 C ASN 210 54.224 4.067 -31.574 1.00 3.00 C ATOM 840 O ASN 210 54.031 2.953 -31.094 1.00 3.00 O ATOM 841 N TYR 211 55.386 4.715 -31.609 1.00 3.00 N ATOM 842 CA TYR 211 56.635 4.102 -31.121 1.00 3.00 C ATOM 843 C TYR 211 56.769 4.221 -29.615 1.00 3.00 C ATOM 844 O TYR 211 57.260 5.282 -29.121 1.00 3.00 O ATOM 845 N ILE 212 56.371 3.195 -28.903 1.00 3.00 N ATOM 846 CA ILE 212 56.365 3.307 -27.430 1.00 3.00 C ATOM 847 C ILE 212 57.716 3.635 -26.835 1.00 3.00 C ATOM 848 O ILE 212 57.714 4.374 -25.808 1.00 3.00 O ATOM 849 N VAL 213 58.787 3.136 -27.391 1.00 3.00 N ATOM 850 CA VAL 213 60.130 3.422 -26.836 1.00 3.00 C ATOM 851 C VAL 213 60.373 4.924 -26.704 1.00 3.00 C ATOM 852 O VAL 213 61.134 5.348 -25.792 1.00 3.00 O ATOM 853 N ARG 214 59.799 5.723 -27.603 1.00 3.00 N ATOM 854 CA ARG 214 59.973 7.167 -27.537 1.00 3.00 C ATOM 855 C ARG 214 59.175 7.838 -26.417 1.00 3.00 C ATOM 856 O ARG 214 59.381 9.074 -26.228 1.00 3.00 O ATOM 857 N LEU 215 58.303 7.133 -25.719 1.00 3.00 N ATOM 858 CA LEU 215 57.438 7.761 -24.685 1.00 3.00 C ATOM 859 C LEU 215 57.634 7.173 -23.303 1.00 3.00 C ATOM 860 O LEU 215 56.848 7.449 -22.350 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 224 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.17 39.2 97 86.6 112 ARMSMC SECONDARY STRUCTURE . . 71.42 50.0 24 70.6 34 ARMSMC SURFACE . . . . . . . . 81.41 40.0 75 89.3 84 ARMSMC BURIED . . . . . . . . 96.90 36.4 22 78.6 28 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 42 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 31 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.98 (Number of atoms: 56) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.98 56 98.2 57 CRMSCA CRN = ALL/NP . . . . . 0.2317 CRMSCA SECONDARY STRUCTURE . . 12.27 17 100.0 17 CRMSCA SURFACE . . . . . . . . 13.54 42 97.7 43 CRMSCA BURIED . . . . . . . . 11.13 14 100.0 14 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.89 224 79.7 281 CRMSMC SECONDARY STRUCTURE . . 12.39 68 80.0 85 CRMSMC SURFACE . . . . . . . . 13.41 168 78.9 213 CRMSMC BURIED . . . . . . . . 11.21 56 82.4 68 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 208 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 190 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 72 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 160 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 48 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.89 224 51.4 436 CRMSALL SECONDARY STRUCTURE . . 12.39 68 48.6 140 CRMSALL SURFACE . . . . . . . . 13.41 168 50.6 332 CRMSALL BURIED . . . . . . . . 11.21 56 53.8 104 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.076 0.475 0.246 56 98.2 57 ERRCA SECONDARY STRUCTURE . . 7.654 0.468 0.234 17 100.0 17 ERRCA SURFACE . . . . . . . . 8.543 0.486 0.254 42 97.7 43 ERRCA BURIED . . . . . . . . 6.678 0.445 0.222 14 100.0 14 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.998 0.470 0.245 224 79.7 281 ERRMC SECONDARY STRUCTURE . . 7.756 0.473 0.242 68 80.0 85 ERRMC SURFACE . . . . . . . . 8.434 0.479 0.250 168 78.9 213 ERRMC BURIED . . . . . . . . 6.691 0.441 0.227 56 82.4 68 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 208 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 190 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 72 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 160 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 48 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.998 0.470 0.245 224 51.4 436 ERRALL SECONDARY STRUCTURE . . 7.756 0.473 0.242 68 48.6 140 ERRALL SURFACE . . . . . . . . 8.434 0.479 0.250 168 50.6 332 ERRALL BURIED . . . . . . . . 6.691 0.441 0.227 56 53.8 104 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 4 11 31 56 57 DISTCA CA (P) 1.75 1.75 7.02 19.30 54.39 57 DISTCA CA (RMS) 0.95 0.95 2.08 3.65 6.44 DISTCA ALL (N) 1 5 17 41 120 224 436 DISTALL ALL (P) 0.23 1.15 3.90 9.40 27.52 436 DISTALL ALL (RMS) 0.95 1.37 2.25 3.55 6.10 DISTALL END of the results output