####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 46 ( 342), selected 46 , name T0629TS301_1-D1 # Molecule2: number of CA atoms 57 ( 436), selected 46 , name T0629-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0629TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 46 3 - 48 1.79 1.79 LCS_AVERAGE: 80.70 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 46 3 - 48 1.79 1.79 LCS_AVERAGE: 80.70 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 20 - 38 0.90 2.95 LCS_AVERAGE: 25.21 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 46 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Y 3 Y 3 13 46 46 10 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 4 P 4 13 46 46 7 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT I 5 I 5 13 46 46 6 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT G 6 G 6 13 46 46 5 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT A 7 A 7 13 46 46 5 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 8 P 8 13 46 46 5 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT I 9 I 9 13 46 46 6 17 29 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 10 P 10 13 46 46 5 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT W 11 W 11 13 46 46 5 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 12 P 12 13 46 46 7 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT S 13 S 13 13 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT D 14 D 14 13 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT S 15 S 15 13 46 46 3 14 31 39 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT V 16 V 16 12 46 46 3 14 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 17 P 17 9 46 46 3 5 30 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT A 18 A 18 9 46 46 5 17 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT G 19 G 19 9 46 46 2 14 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT F 20 F 20 19 46 46 6 16 29 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT A 21 A 21 19 46 46 6 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT L 22 L 22 19 46 46 6 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT M 23 M 23 19 46 46 7 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT E 24 E 24 19 46 46 6 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT G 25 G 25 19 46 46 4 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT Q 26 Q 26 19 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT T 27 T 27 19 46 46 4 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT F 28 F 28 19 46 46 8 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT D 29 D 29 19 46 46 9 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT K 30 K 30 19 46 46 9 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT S 31 S 31 19 46 46 9 16 28 36 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT A 32 A 32 19 46 46 9 17 28 36 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT Y 33 Y 33 19 46 46 9 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 34 P 34 19 46 46 10 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT K 35 K 35 19 46 46 9 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT L 36 L 36 19 46 46 9 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT A 37 A 37 19 46 46 9 19 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT V 38 V 38 19 46 46 9 14 26 35 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT A 39 A 39 16 46 46 3 10 17 27 40 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT Y 40 Y 40 16 46 46 3 10 27 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 41 P 41 16 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT S 42 S 42 16 46 46 9 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT G 43 G 43 3 46 46 3 3 4 5 5 25 31 39 43 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT V 44 V 44 5 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT I 45 I 45 5 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT P 46 P 46 5 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT D 47 D 47 5 46 46 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_GDT M 48 M 48 5 46 46 6 18 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 LCS_AVERAGE LCS_A: 62.20 ( 25.21 80.70 80.70 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 20 32 40 44 45 45 45 45 45 46 46 46 46 46 46 46 46 46 46 GDT PERCENT_AT 17.54 35.09 56.14 70.18 77.19 78.95 78.95 78.95 78.95 78.95 80.70 80.70 80.70 80.70 80.70 80.70 80.70 80.70 80.70 80.70 GDT RMS_LOCAL 0.39 0.78 1.01 1.23 1.40 1.46 1.46 1.46 1.46 1.46 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 GDT RMS_ALL_AT 1.97 1.82 1.81 1.80 1.80 1.81 1.81 1.81 1.81 1.81 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 # Checking swapping # possible swapping detected: Y 3 Y 3 # possible swapping detected: D 14 D 14 # possible swapping detected: D 29 D 29 # possible swapping detected: Y 33 Y 33 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Y 3 Y 3 1.153 0 0.025 1.259 8.186 83.690 51.706 LGA P 4 P 4 0.418 0 0.019 0.179 0.642 97.619 95.918 LGA I 5 I 5 0.799 0 0.023 0.219 2.155 88.333 81.726 LGA G 6 G 6 1.698 0 0.070 0.070 2.028 75.119 75.119 LGA A 7 A 7 1.093 0 0.027 0.040 1.782 92.976 88.952 LGA P 8 P 8 0.908 0 0.067 0.086 1.295 83.690 84.014 LGA I 9 I 9 1.848 0 0.249 1.141 3.558 77.143 64.524 LGA P 10 P 10 1.034 0 0.225 0.246 1.965 83.690 79.048 LGA W 11 W 11 1.036 0 0.033 0.046 1.714 83.690 79.014 LGA P 12 P 12 1.270 0 0.081 0.076 1.592 79.286 80.204 LGA S 13 S 13 1.355 0 0.107 0.783 1.690 81.429 80.000 LGA D 14 D 14 1.358 0 0.043 1.190 6.525 79.286 57.619 LGA S 15 S 15 2.298 0 0.276 0.651 3.580 72.976 64.206 LGA V 16 V 16 1.501 0 0.079 0.127 2.332 77.143 71.837 LGA P 17 P 17 1.923 0 0.687 0.608 3.897 65.476 62.993 LGA A 18 A 18 1.358 0 0.060 0.086 3.111 75.476 70.381 LGA G 19 G 19 1.904 0 0.092 0.092 1.904 79.405 79.405 LGA F 20 F 20 2.091 0 0.064 0.310 3.233 68.810 62.900 LGA A 21 A 21 1.475 0 0.027 0.038 1.688 79.286 79.714 LGA L 22 L 22 0.866 0 0.016 0.202 1.095 85.952 88.214 LGA M 23 M 23 1.113 0 0.157 0.882 3.715 88.214 78.988 LGA E 24 E 24 0.980 0 0.130 0.334 1.692 85.952 80.582 LGA G 25 G 25 0.904 0 0.654 0.654 3.542 76.429 76.429 LGA Q 26 Q 26 0.755 0 0.165 1.428 7.601 85.952 58.148 LGA T 27 T 27 1.528 0 0.061 0.109 1.728 77.143 76.531 LGA F 28 F 28 1.674 0 0.048 0.047 1.674 72.857 81.602 LGA D 29 D 29 1.610 0 0.101 1.066 5.085 77.143 61.012 LGA K 30 K 30 1.369 0 0.034 0.679 2.108 77.143 76.772 LGA S 31 S 31 2.515 0 0.018 0.642 5.336 60.952 54.524 LGA A 32 A 32 2.480 0 0.097 0.101 2.738 68.810 66.476 LGA Y 33 Y 33 0.968 0 0.046 0.064 3.484 92.976 74.405 LGA P 34 P 34 0.562 0 0.051 0.084 0.876 90.476 90.476 LGA K 35 K 35 0.995 0 0.047 0.298 1.751 83.810 84.550 LGA L 36 L 36 1.282 0 0.065 1.398 3.792 79.286 73.452 LGA A 37 A 37 1.046 0 0.126 0.143 1.428 83.690 85.048 LGA V 38 V 38 2.557 0 0.081 0.120 4.010 61.071 54.490 LGA A 39 A 39 3.083 0 0.047 0.061 3.444 53.571 52.857 LGA Y 40 Y 40 2.040 0 0.522 1.434 6.081 63.095 54.643 LGA P 41 P 41 0.296 0 0.564 0.686 3.095 80.476 83.469 LGA S 42 S 42 0.786 0 0.189 0.204 4.517 63.929 59.603 LGA G 43 G 43 7.355 0 0.298 0.298 9.216 13.214 13.214 LGA V 44 V 44 0.457 0 0.103 1.054 2.296 95.238 87.211 LGA I 45 I 45 0.532 0 0.144 0.177 1.096 92.857 90.536 LGA P 46 P 46 0.628 0 0.057 0.104 1.304 95.238 89.320 LGA D 47 D 47 0.232 0 0.054 0.080 1.377 95.238 91.726 LGA M 48 M 48 1.202 0 0.109 0.733 1.584 81.548 78.274 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 46 184 184 100.00 342 342 100.00 57 SUMMARY(RMSD_GDC): 1.789 1.862 2.276 63.277 59.155 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 46 57 4.0 45 1.46 66.228 73.838 2.886 LGA_LOCAL RMSD: 1.459 Number of atoms: 45 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.805 Number of assigned atoms: 46 Std_ASGN_ATOMS RMSD: 1.789 Standard rmsd on all 46 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.919037 * X + 0.097977 * Y + -0.381800 * Z + 40.776157 Y_new = -0.068761 * X + 0.993614 * Y + 0.089464 * Z + 6.757053 Z_new = 0.388127 * X + -0.055967 * Y + 0.919905 * Z + -4.663488 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.074679 -0.398598 -0.060766 [DEG: -4.2788 -22.8380 -3.4816 ] ZXZ: -1.800964 0.402958 1.714008 [DEG: -103.1877 23.0878 98.2054 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0629TS301_1-D1 REMARK 2: T0629-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0629TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 46 57 4.0 45 1.46 73.838 1.79 REMARK ---------------------------------------------------------- MOLECULE T0629TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0629 REMARK MODEL 1 REMARK PARENT N/A ATOM 2 N TYR 3 24.215 0.916 -21.599 1.00 0.00 N ATOM 3 CA TYR 3 25.358 0.780 -20.721 1.00 0.00 C ATOM 4 CB TYR 3 25.829 -0.675 -20.677 1.00 0.00 C ATOM 5 CG TYR 3 24.859 -1.614 -19.998 1.00 0.00 C ATOM 6 CD1 TYR 3 23.965 -2.374 -20.744 1.00 0.00 C ATOM 7 CD2 TYR 3 24.837 -1.737 -18.616 1.00 0.00 C ATOM 8 CE1 TYR 3 23.074 -3.236 -20.131 1.00 0.00 C ATOM 9 CE2 TYR 3 23.954 -2.593 -17.986 1.00 0.00 C ATOM 10 CZ TYR 3 23.068 -3.344 -18.757 1.00 0.00 C ATOM 11 OH TYR 3 22.182 -4.201 -18.146 1.00 0.00 H ATOM 12 O TYR 3 27.167 1.413 -22.165 1.00 0.00 O ATOM 13 C TYR 3 26.467 1.720 -21.224 1.00 0.00 C ATOM 14 N PRO 4 26.644 2.847 -20.575 1.00 0.00 N ATOM 15 CA PRO 4 27.596 3.837 -21.057 1.00 0.00 C ATOM 16 CB PRO 4 27.200 5.120 -20.324 1.00 0.00 C ATOM 17 CG PRO 4 26.571 4.647 -19.056 1.00 0.00 C ATOM 18 CD PRO 4 25.860 3.366 -19.396 1.00 0.00 C ATOM 19 O PRO 4 29.397 2.934 -19.716 1.00 0.00 O ATOM 20 C PRO 4 29.060 3.512 -20.775 1.00 0.00 C ATOM 21 N ILE 5 29.915 3.872 -21.725 1.00 0.00 N ATOM 22 CA ILE 5 31.369 3.820 -21.482 1.00 0.00 C ATOM 23 CB ILE 5 32.160 4.379 -22.679 1.00 0.00 C ATOM 24 CG1 ILE 5 31.950 3.502 -23.915 1.00 0.00 C ATOM 25 CG2 ILE 5 33.635 4.514 -22.325 1.00 0.00 C ATOM 26 CD1 ILE 5 32.505 4.098 -25.189 1.00 0.00 C ATOM 27 O ILE 5 31.188 5.742 -19.993 1.00 0.00 O ATOM 28 C ILE 5 31.665 4.600 -20.202 1.00 0.00 C ATOM 29 N GLY 6 32.402 3.974 -19.294 1.00 0.00 N ATOM 30 CA GLY 6 32.629 4.529 -17.992 1.00 0.00 C ATOM 31 O GLY 6 32.281 3.823 -15.734 1.00 0.00 O ATOM 32 C GLY 6 31.980 3.679 -16.911 1.00 0.00 C ATOM 33 N ALA 7 31.083 2.799 -17.306 1.00 0.00 N ATOM 34 CA ALA 7 30.447 1.930 -16.323 1.00 0.00 C ATOM 35 CB ALA 7 29.242 1.232 -16.932 1.00 0.00 C ATOM 36 O ALA 7 32.260 0.363 -16.501 1.00 0.00 O ATOM 37 C ALA 7 31.412 0.898 -15.775 1.00 0.00 C ATOM 38 N PRO 8 31.234 0.597 -14.491 1.00 0.00 N ATOM 39 CA PRO 8 32.002 -0.420 -13.783 1.00 0.00 C ATOM 40 CB PRO 8 32.717 0.358 -12.677 1.00 0.00 C ATOM 41 CG PRO 8 31.818 1.517 -12.395 1.00 0.00 C ATOM 42 CD PRO 8 31.194 1.890 -13.710 1.00 0.00 C ATOM 43 O PRO 8 30.052 -1.221 -12.505 1.00 0.00 O ATOM 44 C PRO 8 31.059 -1.500 -13.210 1.00 0.00 C ATOM 45 N ILE 9 31.419 -2.759 -13.429 1.00 0.00 N ATOM 46 CA ILE 9 30.702 -3.858 -12.821 1.00 0.00 C ATOM 47 CB ILE 9 29.659 -4.454 -13.786 1.00 0.00 C ATOM 48 CG1 ILE 9 30.344 -5.016 -15.032 1.00 0.00 C ATOM 49 CG2 ILE 9 28.606 -3.414 -14.138 1.00 0.00 C ATOM 50 CD1 ILE 9 29.422 -5.805 -15.933 1.00 0.00 C ATOM 51 O ILE 9 32.923 -4.677 -12.408 1.00 0.00 O ATOM 52 C ILE 9 31.717 -4.914 -12.378 1.00 0.00 C ATOM 53 N PRO 10 31.244 -6.065 -11.963 1.00 0.00 N ATOM 54 CA PRO 10 32.143 -7.132 -11.591 1.00 0.00 C ATOM 55 CB PRO 10 31.637 -7.580 -10.217 1.00 0.00 C ATOM 56 CG PRO 10 30.165 -7.335 -10.262 1.00 0.00 C ATOM 57 CD PRO 10 29.976 -6.081 -11.072 1.00 0.00 C ATOM 58 O PRO 10 31.180 -8.220 -13.488 1.00 0.00 O ATOM 59 C PRO 10 32.052 -8.232 -12.625 1.00 0.00 C ATOM 60 N TRP 11 32.969 -9.194 -12.530 1.00 0.00 N ATOM 61 CA TRP 11 33.104 -10.218 -13.533 1.00 0.00 C ATOM 62 CB TRP 11 34.136 -9.803 -14.585 1.00 0.00 C ATOM 63 CG TRP 11 34.336 -10.825 -15.663 1.00 0.00 C ATOM 64 CD1 TRP 11 35.482 -11.513 -15.936 1.00 0.00 C ATOM 65 CD2 TRP 11 33.362 -11.272 -16.612 1.00 0.00 C ATOM 66 CE2 TRP 11 33.988 -12.232 -17.430 1.00 0.00 C ATOM 67 CE3 TRP 11 32.021 -10.955 -16.852 1.00 0.00 C ATOM 68 NE1 TRP 11 35.284 -12.363 -16.997 1.00 0.00 N ATOM 69 CZ2 TRP 11 33.319 -12.878 -18.469 1.00 0.00 C ATOM 70 CZ3 TRP 11 31.363 -11.600 -17.883 1.00 0.00 C ATOM 71 CH2 TRP 11 32.009 -12.550 -18.679 1.00 0.00 H ATOM 72 O TRP 11 34.405 -11.568 -12.050 1.00 0.00 O ATOM 73 C TRP 11 33.499 -11.522 -12.876 1.00 0.00 C ATOM 74 N PRO 12 32.827 -12.572 -13.285 1.00 0.00 N ATOM 75 CA PRO 12 32.983 -13.889 -12.684 1.00 0.00 C ATOM 76 CB PRO 12 31.562 -14.459 -12.666 1.00 0.00 C ATOM 77 CG PRO 12 30.917 -13.889 -13.885 1.00 0.00 C ATOM 78 CD PRO 12 31.455 -12.495 -14.029 1.00 0.00 C ATOM 79 O PRO 12 34.142 -15.960 -12.904 1.00 0.00 O ATOM 80 C PRO 12 33.910 -14.868 -13.422 1.00 0.00 C ATOM 81 N SER 13 34.428 -14.528 -14.600 1.00 0.00 N ATOM 82 CA SER 13 35.158 -15.507 -15.420 1.00 0.00 C ATOM 83 CB SER 13 34.587 -15.551 -16.838 1.00 0.00 C ATOM 84 OG SER 13 33.239 -15.988 -16.831 1.00 0.00 O ATOM 85 O SER 13 37.017 -14.172 -14.782 1.00 0.00 O ATOM 86 C SER 13 36.632 -15.131 -15.427 1.00 0.00 C ATOM 87 N ASP 14 37.478 -15.857 -16.127 1.00 0.00 N ATOM 88 CA ASP 14 38.892 -15.562 -15.965 1.00 0.00 C ATOM 89 CB ASP 14 39.707 -16.856 -15.913 1.00 0.00 C ATOM 90 CG ASP 14 39.269 -17.864 -16.958 1.00 0.00 C ATOM 91 OD1 ASP 14 38.916 -17.440 -18.080 1.00 0.00 O ATOM 92 OD2 ASP 14 39.278 -19.075 -16.657 1.00 0.00 O ATOM 93 O ASP 14 40.529 -14.106 -16.914 1.00 0.00 O ATOM 94 C ASP 14 39.436 -14.679 -17.066 1.00 0.00 C ATOM 95 N SER 15 38.694 -14.599 -18.160 1.00 0.00 N ATOM 96 CA SER 15 39.093 -13.858 -19.350 1.00 0.00 C ATOM 97 CB SER 15 39.682 -14.804 -20.399 1.00 0.00 C ATOM 98 OG SER 15 38.692 -15.679 -20.909 1.00 0.00 O ATOM 99 O SER 15 36.739 -13.420 -19.483 1.00 0.00 O ATOM 100 C SER 15 37.861 -13.110 -19.891 1.00 0.00 C ATOM 101 N VAL 16 38.075 -12.070 -20.664 1.00 0.00 N ATOM 102 CA VAL 16 36.965 -11.252 -21.205 1.00 0.00 C ATOM 103 CB VAL 16 37.229 -9.747 -21.022 1.00 0.00 C ATOM 104 CG1 VAL 16 36.108 -8.929 -21.647 1.00 0.00 C ATOM 105 CG2 VAL 16 37.384 -9.410 -19.548 1.00 0.00 C ATOM 106 O VAL 16 37.680 -11.674 -23.409 1.00 0.00 O ATOM 107 C VAL 16 36.747 -11.569 -22.653 1.00 0.00 C ATOM 108 N PRO 17 35.517 -11.746 -23.052 1.00 0.00 N ATOM 109 CA PRO 17 35.217 -12.114 -24.441 1.00 0.00 C ATOM 110 CB PRO 17 33.781 -12.643 -24.381 1.00 0.00 C ATOM 111 CG PRO 17 33.140 -11.856 -23.288 1.00 0.00 C ATOM 112 CD PRO 17 34.169 -11.736 -22.200 1.00 0.00 C ATOM 113 O PRO 17 35.331 -11.189 -26.646 1.00 0.00 O ATOM 114 C PRO 17 35.308 -10.948 -25.447 1.00 0.00 C ATOM 115 N ALA 18 35.354 -9.706 -24.974 1.00 0.00 N ATOM 116 CA ALA 18 35.473 -8.574 -25.897 1.00 0.00 C ATOM 117 CB ALA 18 34.096 -8.094 -26.329 1.00 0.00 C ATOM 118 O ALA 18 36.295 -7.226 -24.086 1.00 0.00 O ATOM 119 C ALA 18 36.242 -7.413 -25.313 1.00 0.00 C ATOM 120 N GLY 19 36.836 -6.611 -26.177 1.00 0.00 N ATOM 121 CA GLY 19 37.628 -5.469 -25.727 1.00 0.00 C ATOM 122 O GLY 19 37.336 -3.120 -25.178 1.00 0.00 O ATOM 123 C GLY 19 36.783 -4.199 -25.418 1.00 0.00 C ATOM 124 N PHE 20 35.226 -4.108 -22.735 1.00 0.00 N ATOM 125 CA PHE 20 35.459 -4.060 -21.300 1.00 0.00 C ATOM 126 CB PHE 20 34.518 -5.021 -20.574 1.00 0.00 C ATOM 127 CG PHE 20 33.089 -4.561 -20.540 1.00 0.00 C ATOM 128 CD1 PHE 20 32.095 -5.289 -21.170 1.00 0.00 C ATOM 129 CD2 PHE 20 32.736 -3.398 -19.877 1.00 0.00 C ATOM 130 CE1 PHE 20 30.781 -4.864 -21.140 1.00 0.00 C ATOM 131 CE2 PHE 20 31.423 -2.972 -19.847 1.00 0.00 C ATOM 132 CZ PHE 20 30.445 -3.700 -20.475 1.00 0.00 C ATOM 133 O PHE 20 37.519 -5.177 -21.698 1.00 0.00 O ATOM 134 C PHE 20 36.910 -4.400 -20.987 1.00 0.00 C ATOM 135 N ALA 21 37.402 -3.862 -19.885 1.00 0.00 N ATOM 136 CA ALA 21 38.737 -4.148 -19.393 1.00 0.00 C ATOM 137 CB ALA 21 39.699 -3.042 -19.798 1.00 0.00 C ATOM 138 O ALA 21 37.879 -3.722 -17.184 1.00 0.00 O ATOM 139 C ALA 21 38.735 -4.314 -17.902 1.00 0.00 C ATOM 140 N LEU 22 39.701 -5.091 -17.412 1.00 0.00 N ATOM 141 CA LEU 22 39.842 -5.260 -15.991 1.00 0.00 C ATOM 142 CB LEU 22 40.872 -6.348 -15.680 1.00 0.00 C ATOM 143 CG LEU 22 40.516 -7.765 -16.129 1.00 0.00 C ATOM 144 CD1 LEU 22 41.675 -8.717 -15.873 1.00 0.00 C ATOM 145 CD2 LEU 22 39.263 -8.255 -15.419 1.00 0.00 C ATOM 146 O LEU 22 40.988 -3.222 -16.016 1.00 0.00 O ATOM 147 C LEU 22 40.234 -3.952 -15.395 1.00 0.00 C ATOM 148 N MET 23 39.730 -3.633 -14.196 1.00 0.00 N ATOM 149 CA MET 23 40.162 -2.445 -13.450 1.00 0.00 C ATOM 150 CB MET 23 39.039 -1.946 -12.540 1.00 0.00 C ATOM 151 CG MET 23 37.987 -1.111 -13.249 1.00 0.00 C ATOM 152 SD MET 23 36.707 -2.117 -14.026 1.00 0.00 S ATOM 153 CE MET 23 35.556 -2.307 -12.668 1.00 0.00 C ATOM 154 O MET 23 41.371 -2.851 -11.416 1.00 0.00 O ATOM 155 C MET 23 41.424 -2.781 -12.635 1.00 0.00 C ATOM 156 N GLU 24 42.496 -3.113 -13.328 1.00 0.00 N ATOM 157 CA GLU 24 43.783 -3.418 -12.684 1.00 0.00 C ATOM 158 CB GLU 24 44.257 -4.821 -13.072 1.00 0.00 C ATOM 159 CG GLU 24 43.344 -5.938 -12.591 1.00 0.00 C ATOM 160 CD GLU 24 43.862 -7.314 -12.966 1.00 0.00 C ATOM 161 OE1 GLU 24 44.888 -7.390 -13.673 1.00 0.00 O ATOM 162 OE2 GLU 24 43.241 -8.315 -12.553 1.00 0.00 O ATOM 163 O GLU 24 46.006 -2.751 -13.280 1.00 0.00 O ATOM 164 C GLU 24 44.862 -2.380 -13.055 1.00 0.00 C ATOM 165 N GLY 25 44.489 -1.100 -13.114 1.00 0.00 N ATOM 166 CA GLY 25 45.369 -0.023 -13.548 1.00 0.00 C ATOM 167 O GLY 25 45.299 -0.704 -15.818 1.00 0.00 O ATOM 168 C GLY 25 45.898 -0.124 -14.949 1.00 0.00 C ATOM 169 N GLN 26 47.027 0.470 -15.254 1.00 0.00 N ATOM 170 CA GLN 26 47.402 0.416 -16.653 1.00 0.00 C ATOM 171 CB GLN 26 47.209 -0.997 -17.206 1.00 0.00 C ATOM 172 CG GLN 26 48.083 -2.048 -16.541 1.00 0.00 C ATOM 173 CD GLN 26 49.559 -1.839 -16.818 1.00 0.00 C ATOM 174 OE1 GLN 26 49.990 -1.835 -17.971 1.00 0.00 O ATOM 175 NE2 GLN 26 50.340 -1.664 -15.758 1.00 0.00 N ATOM 176 O GLN 26 45.838 2.201 -16.741 1.00 0.00 O ATOM 177 C GLN 26 46.540 1.451 -17.384 1.00 0.00 C ATOM 178 N THR 27 46.592 1.449 -18.710 1.00 0.00 N ATOM 179 CA THR 27 45.963 2.460 -19.526 1.00 0.00 C ATOM 180 CB THR 27 46.980 3.510 -20.008 1.00 0.00 C ATOM 181 CG2 THR 27 47.573 4.259 -18.825 1.00 0.00 C ATOM 182 OG1 THR 27 48.042 2.863 -20.720 1.00 0.00 O ATOM 183 O THR 27 45.451 0.661 -20.965 1.00 0.00 O ATOM 184 C THR 27 45.289 1.848 -20.700 1.00 0.00 C ATOM 185 N PHE 28 44.521 2.660 -21.405 1.00 0.00 N ATOM 186 CA PHE 28 43.987 2.320 -22.721 1.00 0.00 C ATOM 187 CB PHE 28 42.462 2.219 -22.670 1.00 0.00 C ATOM 188 CG PHE 28 41.780 3.513 -22.327 1.00 0.00 C ATOM 189 CD1 PHE 28 41.394 4.394 -23.321 1.00 0.00 C ATOM 190 CD2 PHE 28 41.525 3.849 -21.007 1.00 0.00 C ATOM 191 CE1 PHE 28 40.766 5.586 -23.004 1.00 0.00 C ATOM 192 CE2 PHE 28 40.899 5.040 -20.691 1.00 0.00 C ATOM 193 CZ PHE 28 40.519 5.906 -21.683 1.00 0.00 C ATOM 194 O PHE 28 44.896 4.446 -23.199 1.00 0.00 O ATOM 195 C PHE 28 44.470 3.396 -23.657 1.00 0.00 C ATOM 196 N ASP 29 44.388 3.115 -24.942 1.00 0.00 N ATOM 197 CA ASP 29 44.763 4.059 -25.967 1.00 0.00 C ATOM 198 CB ASP 29 45.239 3.324 -27.222 1.00 0.00 C ATOM 199 CG ASP 29 46.563 2.616 -27.016 1.00 0.00 C ATOM 200 OD1 ASP 29 47.249 2.917 -26.017 1.00 0.00 O ATOM 201 OD2 ASP 29 46.916 1.761 -27.856 1.00 0.00 O ATOM 202 O ASP 29 42.467 4.411 -26.500 1.00 0.00 O ATOM 203 C ASP 29 43.567 4.936 -26.250 1.00 0.00 C ATOM 204 N LYS 30 43.770 6.259 -26.217 1.00 0.00 N ATOM 205 CA LYS 30 42.695 7.185 -26.559 1.00 0.00 C ATOM 206 CB LYS 30 43.166 8.633 -26.409 1.00 0.00 C ATOM 207 CG LYS 30 43.388 9.067 -24.968 1.00 0.00 C ATOM 208 CD LYS 30 43.859 10.510 -24.892 1.00 0.00 C ATOM 209 CE LYS 30 44.070 10.949 -23.452 1.00 0.00 C ATOM 210 NZ LYS 30 44.570 12.346 -23.364 1.00 0.00 N ATOM 211 O LYS 30 41.010 7.216 -28.195 1.00 0.00 O ATOM 212 C LYS 30 42.183 6.966 -27.954 1.00 0.00 C ATOM 213 N SER 31 43.027 6.495 -28.884 1.00 0.00 N ATOM 214 CA SER 31 42.564 6.261 -30.246 1.00 0.00 C ATOM 215 CB SER 31 43.754 6.096 -31.194 1.00 0.00 C ATOM 216 OG SER 31 44.565 4.999 -30.808 1.00 0.00 O ATOM 217 O SER 31 40.665 5.027 -31.077 1.00 0.00 O ATOM 218 C SER 31 41.649 5.020 -30.340 1.00 0.00 C ATOM 219 N ALA 32 41.958 4.001 -29.560 1.00 0.00 N ATOM 220 CA ALA 32 41.176 2.765 -29.474 1.00 0.00 C ATOM 221 CB ALA 32 41.976 1.679 -28.773 1.00 0.00 C ATOM 222 O ALA 32 38.797 2.612 -29.103 1.00 0.00 O ATOM 223 C ALA 32 39.865 3.072 -28.733 1.00 0.00 C ATOM 224 N TYR 33 39.949 3.969 -27.755 1.00 0.00 N ATOM 225 CA TYR 33 38.824 4.278 -26.838 1.00 0.00 C ATOM 226 CB TYR 33 39.091 3.698 -25.448 1.00 0.00 C ATOM 227 CG TYR 33 39.288 2.199 -25.437 1.00 0.00 C ATOM 228 CD1 TYR 33 40.559 1.651 -25.321 1.00 0.00 C ATOM 229 CD2 TYR 33 38.204 1.338 -25.544 1.00 0.00 C ATOM 230 CE1 TYR 33 40.750 0.281 -25.311 1.00 0.00 C ATOM 231 CE2 TYR 33 38.375 -0.032 -25.536 1.00 0.00 C ATOM 232 CZ TYR 33 39.661 -0.557 -25.417 1.00 0.00 C ATOM 233 OH TYR 33 39.847 -1.920 -25.407 1.00 0.00 H ATOM 234 O TYR 33 38.723 6.389 -25.645 1.00 0.00 O ATOM 235 C TYR 33 38.559 5.783 -26.713 1.00 0.00 C ATOM 236 N PRO 34 38.108 6.389 -27.800 1.00 0.00 N ATOM 237 CA PRO 34 37.951 7.857 -27.826 1.00 0.00 C ATOM 238 CB PRO 34 37.566 8.161 -29.275 1.00 0.00 C ATOM 239 CG PRO 34 36.906 6.913 -29.756 1.00 0.00 C ATOM 240 CD PRO 34 37.658 5.774 -29.129 1.00 0.00 C ATOM 241 O PRO 34 37.029 9.489 -26.358 1.00 0.00 O ATOM 242 C PRO 34 36.887 8.397 -26.877 1.00 0.00 C ATOM 243 N LYS 35 35.825 7.634 -26.623 1.00 0.00 N ATOM 244 CA LYS 35 34.797 8.089 -25.670 1.00 0.00 C ATOM 245 CB LYS 35 33.510 7.277 -25.840 1.00 0.00 C ATOM 246 CG LYS 35 32.764 7.563 -27.132 1.00 0.00 C ATOM 247 CD LYS 35 31.506 6.716 -27.242 1.00 0.00 C ATOM 248 CE LYS 35 30.757 7.004 -28.533 1.00 0.00 C ATOM 249 NZ LYS 35 29.545 6.150 -28.676 1.00 0.00 N ATOM 250 O LYS 35 35.013 8.848 -23.333 1.00 0.00 O ATOM 251 C LYS 35 35.288 7.989 -24.191 1.00 0.00 C ATOM 252 N LEU 36 36.036 6.942 -23.894 1.00 0.00 N ATOM 253 CA LEU 36 36.640 6.821 -22.584 1.00 0.00 C ATOM 254 CB LEU 36 37.379 5.488 -22.455 1.00 0.00 C ATOM 255 CG LEU 36 36.510 4.231 -22.413 1.00 0.00 C ATOM 256 CD1 LEU 36 37.372 2.979 -22.468 1.00 0.00 C ATOM 257 CD2 LEU 36 35.639 4.220 -21.167 1.00 0.00 C ATOM 258 O LEU 36 37.597 8.635 -21.327 1.00 0.00 O ATOM 259 C LEU 36 37.587 8.027 -22.385 1.00 0.00 C ATOM 260 N ALA 37 38.378 8.339 -23.406 1.00 0.00 N ATOM 261 CA ALA 37 39.339 9.411 -23.255 1.00 0.00 C ATOM 262 CB ALA 37 40.209 9.520 -24.498 1.00 0.00 C ATOM 263 O ALA 37 39.012 11.493 -22.094 1.00 0.00 O ATOM 264 C ALA 37 38.623 10.733 -22.984 1.00 0.00 C ATOM 265 N VAL 38 37.581 10.997 -23.736 1.00 0.00 N ATOM 266 CA VAL 38 36.866 12.246 -23.563 1.00 0.00 C ATOM 267 CB VAL 38 35.868 12.490 -24.710 1.00 0.00 C ATOM 268 CG1 VAL 38 35.007 13.710 -24.417 1.00 0.00 C ATOM 269 CG2 VAL 38 36.603 12.656 -26.031 1.00 0.00 C ATOM 270 O VAL 38 36.083 13.412 -21.645 1.00 0.00 O ATOM 271 C VAL 38 36.117 12.333 -22.247 1.00 0.00 C ATOM 272 N ALA 39 35.547 11.224 -21.766 1.00 0.00 N ATOM 273 CA ALA 39 34.717 11.259 -20.567 1.00 0.00 C ATOM 274 CB ALA 39 33.736 10.098 -20.566 1.00 0.00 C ATOM 275 O ALA 39 35.129 11.855 -18.320 1.00 0.00 O ATOM 276 C ALA 39 35.506 11.228 -19.331 1.00 0.00 C ATOM 277 N TYR 40 36.578 10.434 -19.355 1.00 0.00 N ATOM 278 CA TYR 40 37.358 10.188 -18.163 1.00 0.00 C ATOM 279 CB TYR 40 37.572 8.687 -17.962 1.00 0.00 C ATOM 280 CG TYR 40 38.357 8.341 -16.717 1.00 0.00 C ATOM 281 CD1 TYR 40 37.753 8.361 -15.465 1.00 0.00 C ATOM 282 CD2 TYR 40 39.700 7.995 -16.797 1.00 0.00 C ATOM 283 CE1 TYR 40 38.464 8.046 -14.323 1.00 0.00 C ATOM 284 CE2 TYR 40 40.426 7.678 -15.665 1.00 0.00 C ATOM 285 CZ TYR 40 39.795 7.706 -14.421 1.00 0.00 C ATOM 286 OH TYR 40 40.504 7.392 -13.285 1.00 0.00 H ATOM 287 O TYR 40 39.291 11.166 -17.058 1.00 0.00 O ATOM 288 C TYR 40 38.742 10.870 -18.134 1.00 0.00 C ATOM 289 N PRO 41 39.309 11.096 -19.306 1.00 0.00 N ATOM 290 CA PRO 41 40.604 11.766 -19.343 1.00 0.00 C ATOM 291 CB PRO 41 40.305 13.179 -18.840 1.00 0.00 C ATOM 292 CG PRO 41 39.110 13.018 -17.962 1.00 0.00 C ATOM 293 CD PRO 41 38.283 11.927 -18.579 1.00 0.00 C ATOM 294 O PRO 41 41.643 9.812 -18.377 1.00 0.00 O ATOM 295 C PRO 41 41.606 11.062 -18.459 1.00 0.00 C ATOM 296 N SER 42 42.410 11.853 -17.765 1.00 0.00 N ATOM 297 CA SER 42 43.463 11.317 -16.912 1.00 0.00 C ATOM 298 CB SER 42 44.736 12.156 -17.040 1.00 0.00 C ATOM 299 OG SER 42 44.516 13.486 -16.604 1.00 0.00 O ATOM 300 O SER 42 43.933 11.167 -14.592 1.00 0.00 O ATOM 301 C SER 42 43.075 11.241 -15.451 1.00 0.00 C ATOM 302 N GLY 43 41.772 11.159 -15.191 1.00 0.00 N ATOM 303 CA GLY 43 41.235 11.000 -13.855 1.00 0.00 C ATOM 304 O GLY 43 42.223 10.005 -11.895 1.00 0.00 O ATOM 305 C GLY 43 41.968 9.894 -13.104 1.00 0.00 C ATOM 306 N VAL 44 44.579 6.464 -17.994 1.00 0.00 N ATOM 307 CA VAL 44 44.614 5.439 -16.980 1.00 0.00 C ATOM 308 CB VAL 44 45.169 5.983 -15.651 1.00 0.00 C ATOM 309 CG1 VAL 44 46.600 6.467 -15.828 1.00 0.00 C ATOM 310 CG2 VAL 44 44.284 7.103 -15.123 1.00 0.00 C ATOM 311 O VAL 44 42.222 5.398 -16.890 1.00 0.00 O ATOM 312 C VAL 44 43.272 4.791 -16.695 1.00 0.00 C ATOM 313 N ILE 45 43.330 3.527 -16.299 1.00 0.00 N ATOM 314 CA ILE 45 42.162 2.780 -15.857 1.00 0.00 C ATOM 315 CB ILE 45 42.095 1.393 -16.518 1.00 0.00 C ATOM 316 CG1 ILE 45 41.967 1.531 -18.037 1.00 0.00 C ATOM 317 CG2 ILE 45 40.956 0.576 -15.927 1.00 0.00 C ATOM 318 CD1 ILE 45 42.146 0.230 -18.787 1.00 0.00 C ATOM 319 O ILE 45 43.290 2.665 -13.804 1.00 0.00 O ATOM 320 C ILE 45 42.206 2.671 -14.379 1.00 0.00 C ATOM 321 N PRO 46 41.052 2.583 -13.736 1.00 0.00 N ATOM 322 CA PRO 46 41.047 2.431 -12.292 1.00 0.00 C ATOM 323 CB PRO 46 39.560 2.399 -11.930 1.00 0.00 C ATOM 324 CG PRO 46 38.884 3.098 -13.060 1.00 0.00 C ATOM 325 CD PRO 46 39.610 2.675 -14.306 1.00 0.00 C ATOM 326 O PRO 46 41.873 0.214 -12.694 1.00 0.00 O ATOM 327 C PRO 46 41.755 1.146 -11.919 1.00 0.00 C ATOM 328 N ASP 47 42.299 1.139 -10.725 1.00 0.00 N ATOM 329 CA ASP 47 43.003 -0.032 -10.246 1.00 0.00 C ATOM 330 CB ASP 47 44.474 0.298 -9.983 1.00 0.00 C ATOM 331 CG ASP 47 45.314 -0.939 -9.732 1.00 0.00 C ATOM 332 OD1 ASP 47 44.734 -1.991 -9.391 1.00 0.00 O ATOM 333 OD2 ASP 47 46.550 -0.857 -9.881 1.00 0.00 O ATOM 334 O ASP 47 42.338 0.257 -8.005 1.00 0.00 O ATOM 335 C ASP 47 42.224 -0.395 -9.039 1.00 0.00 C ATOM 336 N MET 48 41.373 -1.394 -9.170 1.00 0.00 N ATOM 337 CA MET 48 40.592 -1.775 -8.039 1.00 0.00 C ATOM 338 CB MET 48 39.117 -1.905 -8.425 1.00 0.00 C ATOM 339 CG MET 48 38.499 -0.626 -8.962 1.00 0.00 C ATOM 340 SD MET 48 36.841 -0.876 -9.623 1.00 0.00 S ATOM 341 CE MET 48 35.957 -1.365 -8.145 1.00 0.00 C ATOM 342 O MET 48 40.464 -3.783 -6.751 1.00 0.00 O ATOM 343 C MET 48 41.168 -3.113 -7.489 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 342 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 53.53 72.2 90 80.4 112 ARMSMC SECONDARY STRUCTURE . . 29.96 83.3 24 70.6 34 ARMSMC SURFACE . . . . . . . . 57.03 70.6 68 81.0 84 ARMSMC BURIED . . . . . . . . 40.87 77.3 22 78.6 28 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.01 63.9 36 78.3 46 ARMSSC1 RELIABLE SIDE CHAINS . 68.03 63.6 33 78.6 42 ARMSSC1 SECONDARY STRUCTURE . . 55.55 77.8 9 64.3 14 ARMSSC1 SURFACE . . . . . . . . 65.27 65.5 29 80.6 36 ARMSSC1 BURIED . . . . . . . . 78.33 57.1 7 70.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 44.90 67.9 28 80.0 35 ARMSSC2 RELIABLE SIDE CHAINS . 41.60 69.2 26 83.9 31 ARMSSC2 SECONDARY STRUCTURE . . 40.73 75.0 8 66.7 12 ARMSSC2 SURFACE . . . . . . . . 40.64 71.4 21 80.8 26 ARMSSC2 BURIED . . . . . . . . 55.77 57.1 7 77.8 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.67 33.3 6 60.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 79.01 40.0 5 55.6 9 ARMSSC3 SECONDARY STRUCTURE . . 29.16 100.0 1 33.3 3 ARMSSC3 SURFACE . . . . . . . . 88.14 20.0 5 55.6 9 ARMSSC3 BURIED . . . . . . . . 14.37 100.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 25.54 50.0 2 50.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 25.54 50.0 2 50.0 4 ARMSSC4 SECONDARY STRUCTURE . . 34.46 0.0 1 50.0 2 ARMSSC4 SURFACE . . . . . . . . 25.54 50.0 2 50.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.79 (Number of atoms: 46) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.79 46 80.7 57 CRMSCA CRN = ALL/NP . . . . . 0.0389 CRMSCA SECONDARY STRUCTURE . . 1.68 12 70.6 17 CRMSCA SURFACE . . . . . . . . 1.50 35 81.4 43 CRMSCA BURIED . . . . . . . . 2.49 11 78.6 14 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.86 226 80.4 281 CRMSMC SECONDARY STRUCTURE . . 1.72 60 70.6 85 CRMSMC SURFACE . . . . . . . . 1.68 173 81.2 213 CRMSMC BURIED . . . . . . . . 2.36 53 77.9 68 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 2.68 158 76.0 208 CRMSSC RELIABLE SIDE CHAINS . 2.58 146 76.8 190 CRMSSC SECONDARY STRUCTURE . . 2.12 46 63.9 72 CRMSSC SURFACE . . . . . . . . 2.76 121 75.6 160 CRMSSC BURIED . . . . . . . . 2.41 37 77.1 48 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.28 342 78.4 436 CRMSALL SECONDARY STRUCTURE . . 1.90 94 67.1 140 CRMSALL SURFACE . . . . . . . . 2.22 261 78.6 332 CRMSALL BURIED . . . . . . . . 2.46 81 77.9 104 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.446 1.000 0.500 46 80.7 57 ERRCA SECONDARY STRUCTURE . . 1.504 1.000 0.500 12 70.6 17 ERRCA SURFACE . . . . . . . . 1.324 1.000 0.500 35 81.4 43 ERRCA BURIED . . . . . . . . 1.834 1.000 0.500 11 78.6 14 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.528 1.000 0.500 226 80.4 281 ERRMC SECONDARY STRUCTURE . . 1.537 1.000 0.500 60 70.6 85 ERRMC SURFACE . . . . . . . . 1.460 1.000 0.500 173 81.2 213 ERRMC BURIED . . . . . . . . 1.751 1.000 0.500 53 77.9 68 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.201 1.000 0.500 158 76.0 208 ERRSC RELIABLE SIDE CHAINS . 2.125 1.000 0.500 146 76.8 190 ERRSC SECONDARY STRUCTURE . . 1.870 1.000 0.500 46 63.9 72 ERRSC SURFACE . . . . . . . . 2.250 1.000 0.500 121 75.6 160 ERRSC BURIED . . . . . . . . 2.039 1.000 0.500 37 77.1 48 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.824 1.000 0.500 342 78.4 436 ERRALL SECONDARY STRUCTURE . . 1.681 1.000 0.500 94 67.1 140 ERRALL SURFACE . . . . . . . . 1.796 1.000 0.500 261 78.6 332 ERRALL BURIED . . . . . . . . 1.916 1.000 0.500 81 77.9 104 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 39 44 45 46 46 57 DISTCA CA (P) 29.82 68.42 77.19 78.95 80.70 57 DISTCA CA (RMS) 0.75 1.21 1.42 1.48 1.79 DISTCA ALL (N) 90 248 295 327 342 342 436 DISTALL ALL (P) 20.64 56.88 67.66 75.00 78.44 436 DISTALL ALL (RMS) 0.75 1.25 1.52 1.86 2.28 DISTALL END of the results output