####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 144), selected 20 , name T0629TS296_1-D1 # Molecule2: number of CA atoms 57 ( 436), selected 20 , name T0629-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0629TS296_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 6 - 25 3.07 3.07 LCS_AVERAGE: 35.09 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 12 - 22 1.98 5.10 LONGEST_CONTINUOUS_SEGMENT: 11 13 - 23 1.82 4.42 LONGEST_CONTINUOUS_SEGMENT: 11 14 - 24 1.66 4.75 LCS_AVERAGE: 16.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 15 - 23 0.87 6.07 LCS_AVERAGE: 11.58 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 6 G 6 3 6 20 3 3 4 6 9 9 12 16 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT A 7 A 7 5 7 20 4 5 5 6 6 10 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT P 8 P 8 5 7 20 4 5 5 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT I 9 I 9 5 7 20 4 5 5 6 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT P 10 P 10 5 7 20 4 5 5 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT W 11 W 11 5 7 20 4 5 5 7 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT P 12 P 12 5 11 20 4 5 6 7 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT S 13 S 13 5 11 20 4 5 6 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT D 14 D 14 5 11 20 4 5 6 8 12 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT S 15 S 15 9 11 20 3 8 9 9 10 12 13 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT V 16 V 16 9 11 20 4 8 9 9 10 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT P 17 P 17 9 11 20 4 8 9 9 10 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT A 18 A 18 9 11 20 4 8 9 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT G 19 G 19 9 11 20 4 8 9 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT F 20 F 20 9 11 20 4 8 9 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT A 21 A 21 9 11 20 4 8 9 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT L 22 L 22 9 11 20 4 8 9 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT M 23 M 23 9 11 20 4 5 9 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT E 24 E 24 5 11 20 3 3 5 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 LCS_GDT G 25 G 25 3 7 20 3 3 4 6 6 7 7 11 11 15 19 20 20 20 20 20 20 20 20 20 LCS_AVERAGE LCS_A: 21.14 ( 11.58 16.75 35.09 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 8 9 9 13 14 16 18 19 19 19 20 20 20 20 20 20 20 20 20 GDT PERCENT_AT 7.02 14.04 15.79 15.79 22.81 24.56 28.07 31.58 33.33 33.33 33.33 35.09 35.09 35.09 35.09 35.09 35.09 35.09 35.09 35.09 GDT RMS_LOCAL 0.20 0.71 0.87 0.87 1.92 2.06 2.32 2.58 2.78 2.78 2.78 3.07 3.07 3.07 3.07 3.07 3.07 3.07 3.07 3.07 GDT RMS_ALL_AT 3.92 6.44 6.07 6.07 3.31 3.20 3.16 3.22 3.14 3.14 3.14 3.07 3.07 3.07 3.07 3.07 3.07 3.07 3.07 3.07 # Checking swapping # possible swapping detected: D 14 D 14 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 6 G 6 5.673 0 0.669 0.669 5.831 25.119 25.119 LGA A 7 A 7 3.561 0 0.585 0.572 4.227 46.667 44.762 LGA P 8 P 8 2.304 0 0.076 0.116 3.815 55.595 53.265 LGA I 9 I 9 3.011 0 0.094 0.142 6.874 59.167 42.500 LGA P 10 P 10 2.302 0 0.589 0.558 4.730 66.786 55.034 LGA W 11 W 11 2.272 0 0.054 1.138 7.468 79.762 38.095 LGA P 12 P 12 3.296 0 0.236 0.251 5.454 50.357 41.565 LGA S 13 S 13 1.585 0 0.063 0.475 3.216 77.381 69.444 LGA D 14 D 14 1.956 0 0.449 0.488 4.310 64.405 57.381 LGA S 15 S 15 4.364 0 0.117 0.618 7.833 41.905 32.698 LGA V 16 V 16 2.899 0 0.222 1.234 3.612 48.452 55.510 LGA P 17 P 17 3.171 0 0.111 0.115 4.343 63.571 54.014 LGA A 18 A 18 0.679 0 0.054 0.060 1.637 81.667 83.429 LGA G 19 G 19 2.673 0 0.108 0.108 3.159 59.286 59.286 LGA F 20 F 20 1.928 0 0.062 1.142 7.202 75.000 47.532 LGA A 21 A 21 1.958 0 0.044 0.053 2.151 68.810 68.000 LGA L 22 L 22 1.702 0 0.027 0.185 2.295 72.857 70.833 LGA M 23 M 23 1.263 0 0.258 0.293 4.186 79.286 64.048 LGA E 24 E 24 2.801 0 0.523 0.693 7.378 45.714 33.545 LGA G 25 G 25 7.478 0 0.562 0.562 11.743 7.857 7.857 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 80 100.00 140 140 100.00 57 SUMMARY(RMSD_GDC): 3.065 3.235 3.955 20.520 17.613 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 57 4.0 18 2.58 24.123 23.779 0.672 LGA_LOCAL RMSD: 2.579 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.223 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 3.065 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.917333 * X + -0.339106 * Y + 0.208586 * Z + 24.184921 Y_new = 0.350126 * X + 0.437767 * Y + -0.828113 * Z + -0.855358 Z_new = 0.189506 * X + 0.832687 * Y + 0.520308 * Z + -12.128076 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.364613 -0.190659 1.012301 [DEG: 20.8908 -10.9239 58.0006 ] ZXZ: 0.246748 1.023585 0.223772 [DEG: 14.1376 58.6471 12.8212 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0629TS296_1-D1 REMARK 2: T0629-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0629TS296_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 57 4.0 18 2.58 23.779 3.07 REMARK ---------------------------------------------------------- MOLECULE T0629TS296_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0629 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N GLY 6 30.540 -1.865 -20.118 1.00 1.00 N ATOM 2 CA GLY 6 30.510 -1.133 -18.831 1.00 1.00 C ATOM 3 C GLY 6 31.841 -1.263 -18.175 1.00 1.00 C ATOM 4 O GLY 6 32.563 -2.226 -18.418 1.00 1.00 O ATOM 5 H1 GLY 6 29.808 -1.884 -20.641 1.00 1.00 H ATOM 6 H2 GLY 6 30.710 -2.748 -20.130 1.00 1.00 H ATOM 7 H3 GLY 6 31.129 -1.628 -20.757 1.00 1.00 H ATOM 8 N ALA 7 32.201 -0.273 -17.340 1.00 1.00 N ATOM 9 CA ALA 7 33.482 -0.289 -16.705 1.00 1.00 C ATOM 10 C ALA 7 33.562 -1.439 -15.757 1.00 1.00 C ATOM 11 O ALA 7 34.563 -2.153 -15.732 1.00 1.00 O ATOM 13 CB ALA 7 33.732 1.026 -15.983 1.00 1.00 C ATOM 14 N PRO 8 32.538 -1.667 -14.981 1.00 1.00 N ATOM 15 CA PRO 8 32.635 -2.760 -14.065 1.00 1.00 C ATOM 16 C PRO 8 32.360 -4.061 -14.736 1.00 1.00 C ATOM 17 O PRO 8 31.686 -4.082 -15.766 1.00 1.00 O ATOM 18 CB PRO 8 31.580 -2.446 -13.002 1.00 1.00 C ATOM 19 CD PRO 8 31.257 -0.844 -14.751 1.00 1.00 C ATOM 20 CG PRO 8 30.530 -1.679 -13.734 1.00 1.00 C ATOM 21 N ILE 9 32.906 -5.156 -14.174 1.00 1.00 N ATOM 22 CA ILE 9 32.629 -6.471 -14.662 1.00 1.00 C ATOM 23 C ILE 9 31.838 -7.076 -13.564 1.00 1.00 C ATOM 24 O ILE 9 32.265 -7.090 -12.415 1.00 1.00 O ATOM 26 CB ILE 9 33.926 -7.231 -14.999 1.00 1.00 C ATOM 27 CD1 ILE 9 36.096 -7.046 -16.323 1.00 1.00 C ATOM 28 CG1 ILE 9 34.701 -6.504 -16.100 1.00 1.00 C ATOM 29 CG2 ILE 9 33.614 -8.671 -15.382 1.00 1.00 C ATOM 30 N PRO 10 30.684 -7.563 -13.892 1.00 1.00 N ATOM 31 CA PRO 10 29.814 -8.120 -12.900 1.00 1.00 C ATOM 32 C PRO 10 30.293 -9.422 -12.352 1.00 1.00 C ATOM 33 O PRO 10 29.684 -9.902 -11.394 1.00 1.00 O ATOM 34 CB PRO 10 28.485 -8.305 -13.635 1.00 1.00 C ATOM 35 CD PRO 10 30.065 -7.583 -15.282 1.00 1.00 C ATOM 36 CG PRO 10 28.870 -8.469 -15.067 1.00 1.00 C ATOM 37 N TRP 11 31.342 -10.048 -12.916 1.00 1.00 N ATOM 38 CA TRP 11 31.569 -11.351 -12.371 1.00 1.00 C ATOM 39 C TRP 11 32.990 -11.492 -11.907 1.00 1.00 C ATOM 40 O TRP 11 33.918 -10.995 -12.532 1.00 1.00 O ATOM 42 CB TRP 11 31.239 -12.429 -13.405 1.00 1.00 C ATOM 45 CG TRP 11 29.793 -12.466 -13.793 1.00 1.00 C ATOM 46 CD1 TRP 11 29.191 -11.746 -14.783 1.00 1.00 C ATOM 48 NE1 TRP 11 27.852 -12.047 -14.841 1.00 1.00 N ATOM 49 CD2 TRP 11 28.766 -13.267 -13.196 1.00 1.00 C ATOM 50 CE2 TRP 11 27.568 -12.980 -13.875 1.00 1.00 C ATOM 51 CH2 TRP 11 26.364 -14.496 -12.524 1.00 1.00 H ATOM 52 CZ2 TRP 11 26.358 -13.590 -13.546 1.00 1.00 C ATOM 53 CE3 TRP 11 28.742 -14.199 -12.154 1.00 1.00 C ATOM 54 CZ3 TRP 11 27.541 -14.801 -11.831 1.00 1.00 C ATOM 55 N PRO 12 33.169 -12.144 -10.785 1.00 1.00 N ATOM 56 CA PRO 12 34.499 -12.468 -10.355 1.00 1.00 C ATOM 57 C PRO 12 35.161 -13.456 -11.277 1.00 1.00 C ATOM 58 O PRO 12 36.374 -13.379 -11.466 1.00 1.00 O ATOM 59 CB PRO 12 34.303 -13.059 -8.958 1.00 1.00 C ATOM 60 CD PRO 12 32.125 -12.571 -9.820 1.00 1.00 C ATOM 61 CG PRO 12 32.887 -13.527 -8.946 1.00 1.00 C ATOM 62 N SER 13 34.401 -14.387 -11.883 1.00 1.00 N ATOM 63 CA SER 13 34.974 -15.355 -12.769 1.00 1.00 C ATOM 64 C SER 13 35.381 -14.628 -14.010 1.00 1.00 C ATOM 65 O SER 13 34.999 -13.477 -14.204 1.00 1.00 O ATOM 67 CB SER 13 33.974 -16.476 -13.058 1.00 1.00 C ATOM 69 OG SER 13 32.888 -16.003 -13.835 1.00 1.00 O ATOM 70 N ASP 14 36.193 -15.307 -14.854 1.00 1.00 N ATOM 71 CA ASP 14 36.786 -14.787 -16.057 1.00 1.00 C ATOM 72 C ASP 14 35.712 -14.396 -17.009 1.00 1.00 C ATOM 73 O ASP 14 35.421 -15.124 -17.958 1.00 1.00 O ATOM 75 CB ASP 14 37.723 -15.822 -16.682 1.00 1.00 C ATOM 76 CG ASP 14 38.972 -16.052 -15.855 1.00 1.00 C ATOM 77 OD1 ASP 14 39.238 -15.242 -14.941 1.00 1.00 O ATOM 78 OD2 ASP 14 39.685 -17.043 -16.118 1.00 1.00 O ATOM 79 N SER 15 35.104 -13.217 -16.788 1.00 1.00 N ATOM 80 CA SER 15 34.118 -12.744 -17.697 1.00 1.00 C ATOM 81 C SER 15 34.459 -11.319 -17.967 1.00 1.00 C ATOM 82 O SER 15 34.480 -10.478 -17.066 1.00 1.00 O ATOM 84 CB SER 15 32.717 -12.917 -17.105 1.00 1.00 C ATOM 86 OG SER 15 31.729 -12.398 -17.977 1.00 1.00 O ATOM 87 N VAL 16 34.746 -11.014 -19.236 1.00 1.00 N ATOM 88 CA VAL 16 35.068 -9.687 -19.661 1.00 1.00 C ATOM 89 C VAL 16 34.387 -9.566 -20.970 1.00 1.00 C ATOM 90 O VAL 16 34.096 -10.588 -21.578 1.00 1.00 O ATOM 92 CB VAL 16 36.592 -9.471 -19.730 1.00 1.00 C ATOM 93 CG1 VAL 16 37.218 -9.650 -18.356 1.00 1.00 C ATOM 94 CG2 VAL 16 37.220 -10.424 -20.735 1.00 1.00 C ATOM 95 N PRO 17 34.088 -8.388 -21.422 1.00 1.00 N ATOM 96 CA PRO 17 33.558 -8.294 -22.747 1.00 1.00 C ATOM 97 C PRO 17 34.730 -8.619 -23.607 1.00 1.00 C ATOM 98 O PRO 17 35.846 -8.282 -23.212 1.00 1.00 O ATOM 99 CB PRO 17 33.072 -6.846 -22.848 1.00 1.00 C ATOM 100 CD PRO 17 33.984 -7.119 -20.652 1.00 1.00 C ATOM 101 CG PRO 17 32.915 -6.405 -21.432 1.00 1.00 C ATOM 102 N ALA 18 34.531 -9.281 -24.763 1.00 1.00 N ATOM 103 CA ALA 18 35.679 -9.639 -25.538 1.00 1.00 C ATOM 104 C ALA 18 36.265 -8.384 -26.101 1.00 1.00 C ATOM 105 O ALA 18 35.551 -7.452 -26.465 1.00 1.00 O ATOM 107 CB ALA 18 35.294 -10.623 -26.632 1.00 1.00 C ATOM 108 N GLY 19 37.606 -8.304 -26.148 1.00 1.00 N ATOM 109 CA GLY 19 38.210 -7.147 -26.738 1.00 1.00 C ATOM 110 C GLY 19 38.213 -6.010 -25.763 1.00 1.00 C ATOM 111 O GLY 19 38.557 -4.879 -26.113 1.00 1.00 O ATOM 113 N PHE 20 37.824 -6.264 -24.504 1.00 1.00 N ATOM 114 CA PHE 20 37.869 -5.182 -23.571 1.00 1.00 C ATOM 115 C PHE 20 39.116 -5.400 -22.785 1.00 1.00 C ATOM 116 O PHE 20 39.622 -6.520 -22.723 1.00 1.00 O ATOM 118 CB PHE 20 36.605 -5.165 -22.709 1.00 1.00 C ATOM 119 CG PHE 20 36.558 -4.031 -21.724 1.00 1.00 C ATOM 120 CZ PHE 20 36.476 -1.939 -19.897 1.00 1.00 C ATOM 121 CD1 PHE 20 36.185 -2.761 -22.126 1.00 1.00 C ATOM 122 CE1 PHE 20 36.142 -1.718 -21.220 1.00 1.00 C ATOM 123 CD2 PHE 20 36.888 -4.235 -20.396 1.00 1.00 C ATOM 124 CE2 PHE 20 36.846 -3.194 -19.490 1.00 1.00 C ATOM 125 N ALA 21 39.680 -4.329 -22.194 1.00 1.00 N ATOM 126 CA ALA 21 40.887 -4.517 -21.445 1.00 1.00 C ATOM 127 C ALA 21 40.572 -4.376 -19.995 1.00 1.00 C ATOM 128 O ALA 21 39.636 -3.676 -19.605 1.00 1.00 O ATOM 130 CB ALA 21 41.945 -3.517 -21.886 1.00 1.00 C ATOM 131 N LEU 22 41.373 -5.069 -19.169 1.00 1.00 N ATOM 132 CA LEU 22 41.204 -5.105 -17.751 1.00 1.00 C ATOM 133 C LEU 22 41.391 -3.715 -17.250 1.00 1.00 C ATOM 134 O LEU 22 42.237 -2.968 -17.740 1.00 1.00 O ATOM 136 CB LEU 22 42.194 -6.084 -17.118 1.00 1.00 C ATOM 137 CG LEU 22 41.998 -7.563 -17.460 1.00 1.00 C ATOM 138 CD1 LEU 22 43.133 -8.401 -16.893 1.00 1.00 C ATOM 139 CD2 LEU 22 40.660 -8.062 -16.939 1.00 1.00 C ATOM 140 N MET 23 40.556 -3.327 -16.272 1.00 1.00 N ATOM 141 CA MET 23 40.699 -2.051 -15.649 1.00 1.00 C ATOM 142 C MET 23 40.768 -2.354 -14.193 1.00 1.00 C ATOM 143 O MET 23 40.207 -3.350 -13.736 1.00 1.00 O ATOM 145 CB MET 23 39.533 -1.136 -16.028 1.00 1.00 C ATOM 146 SD MET 23 38.071 0.269 -17.917 1.00 1.00 S ATOM 147 CE MET 23 38.655 1.820 -17.238 1.00 1.00 C ATOM 148 CG MET 23 39.451 -0.821 -17.513 1.00 1.00 C ATOM 149 N GLU 24 41.492 -1.518 -13.430 1.00 1.00 N ATOM 150 CA GLU 24 41.646 -1.783 -12.031 1.00 1.00 C ATOM 151 C GLU 24 40.795 -0.818 -11.282 1.00 1.00 C ATOM 152 O GLU 24 40.984 0.395 -11.374 1.00 1.00 O ATOM 154 CB GLU 24 43.116 -1.675 -11.624 1.00 1.00 C ATOM 155 CD GLU 24 44.851 -1.908 -9.802 1.00 1.00 C ATOM 156 CG GLU 24 43.380 -1.987 -10.160 1.00 1.00 C ATOM 157 OE1 GLU 24 45.680 -1.766 -10.726 1.00 1.00 O ATOM 158 OE2 GLU 24 45.175 -1.989 -8.599 1.00 1.00 O ATOM 159 N GLY 25 39.830 -1.351 -10.508 1.00 1.00 N ATOM 160 CA GLY 25 38.955 -0.510 -9.745 1.00 1.00 C ATOM 161 C GLY 25 38.042 -1.419 -8.930 1.00 1.00 C ATOM 162 O GLY 25 37.324 -2.243 -9.558 1.00 1.00 O ATOM 164 OXT GLY 25 38.058 -1.294 -7.676 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 140 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 58.07 63.2 38 33.9 112 ARMSMC SECONDARY STRUCTURE . . 37.76 83.3 12 35.3 34 ARMSMC SURFACE . . . . . . . . 54.27 67.7 31 36.9 84 ARMSMC BURIED . . . . . . . . 72.56 42.9 7 25.0 28 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.87 57.1 14 30.4 46 ARMSSC1 RELIABLE SIDE CHAINS . 68.93 61.5 13 31.0 42 ARMSSC1 SECONDARY STRUCTURE . . 73.21 60.0 5 35.7 14 ARMSSC1 SURFACE . . . . . . . . 80.86 50.0 12 33.3 36 ARMSSC1 BURIED . . . . . . . . 3.84 100.0 2 20.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 48.85 90.9 11 31.4 35 ARMSSC2 RELIABLE SIDE CHAINS . 50.88 90.0 10 32.3 31 ARMSSC2 SECONDARY STRUCTURE . . 71.74 80.0 5 41.7 12 ARMSSC2 SURFACE . . . . . . . . 53.75 88.9 9 34.6 26 ARMSSC2 BURIED . . . . . . . . 11.23 100.0 2 22.2 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 19.03 100.0 2 20.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 19.03 100.0 2 22.2 9 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC3 SURFACE . . . . . . . . 26.89 100.0 1 11.1 9 ARMSSC3 BURIED . . . . . . . . 1.20 100.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.07 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.07 20 35.1 57 CRMSCA CRN = ALL/NP . . . . . 0.1533 CRMSCA SECONDARY STRUCTURE . . 2.29 6 35.3 17 CRMSCA SURFACE . . . . . . . . 3.03 16 37.2 43 CRMSCA BURIED . . . . . . . . 3.19 4 28.6 14 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.31 97 34.5 281 CRMSMC SECONDARY STRUCTURE . . 2.32 30 35.3 85 CRMSMC SURFACE . . . . . . . . 3.35 78 36.6 213 CRMSMC BURIED . . . . . . . . 3.12 19 27.9 68 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.83 60 28.8 208 CRMSSC RELIABLE SIDE CHAINS . 4.95 56 29.5 190 CRMSSC SECONDARY STRUCTURE . . 5.24 29 40.3 72 CRMSSC SURFACE . . . . . . . . 4.82 51 31.9 160 CRMSSC BURIED . . . . . . . . 4.84 9 18.8 48 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.00 140 32.1 436 CRMSALL SECONDARY STRUCTURE . . 4.12 53 37.9 140 CRMSALL SURFACE . . . . . . . . 4.04 115 34.6 332 CRMSALL BURIED . . . . . . . . 3.78 25 24.0 104 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.799 0.415 0.207 20 35.1 57 ERRCA SECONDARY STRUCTURE . . 1.211 0.352 0.176 6 35.3 17 ERRCA SURFACE . . . . . . . . 1.732 0.396 0.198 16 37.2 43 ERRCA BURIED . . . . . . . . 2.068 0.489 0.244 4 28.6 14 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.936 0.428 0.218 97 34.5 281 ERRMC SECONDARY STRUCTURE . . 1.216 0.346 0.174 30 35.3 85 ERRMC SURFACE . . . . . . . . 1.935 0.420 0.215 78 36.6 213 ERRMC BURIED . . . . . . . . 1.941 0.459 0.229 19 27.9 68 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.485 0.591 0.295 60 28.8 208 ERRSC RELIABLE SIDE CHAINS . 3.627 0.604 0.302 56 29.5 190 ERRSC SECONDARY STRUCTURE . . 3.912 0.625 0.312 29 40.3 72 ERRSC SURFACE . . . . . . . . 3.451 0.584 0.292 51 31.9 160 ERRSC BURIED . . . . . . . . 3.675 0.630 0.315 9 18.8 48 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.553 0.490 0.248 140 32.1 436 ERRALL SECONDARY STRUCTURE . . 2.599 0.482 0.241 53 37.9 140 ERRALL SURFACE . . . . . . . . 2.564 0.486 0.246 115 34.6 332 ERRALL BURIED . . . . . . . . 2.504 0.511 0.255 25 24.0 104 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 6 13 19 20 20 57 DISTCA CA (P) 1.75 10.53 22.81 33.33 35.09 57 DISTCA CA (RMS) 0.96 1.52 2.10 2.85 3.07 DISTCA ALL (N) 6 28 64 113 139 140 436 DISTALL ALL (P) 1.38 6.42 14.68 25.92 31.88 436 DISTALL ALL (RMS) 0.79 1.41 2.08 3.03 3.92 DISTALL END of the results output