####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 57 ( 228), selected 57 , name T0629AL396_1-D1 # Molecule2: number of CA atoms 57 ( 436), selected 57 , name T0629-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0629AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 57 1 - 216 2.13 2.13 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 1 - 40 1.62 2.21 LCS_AVERAGE: 69.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 19 - 38 0.98 2.87 LCS_AVERAGE: 29.21 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 57 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 15 40 57 4 20 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 2 S 2 15 40 57 4 19 34 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT Y 3 Y 3 15 40 57 4 17 29 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 4 P 4 15 40 57 4 19 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT I 5 I 5 15 40 57 5 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT G 6 G 6 15 40 57 4 20 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 7 A 7 15 40 57 4 20 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 8 P 8 16 40 57 7 20 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT I 9 I 9 16 40 57 3 21 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 10 P 10 16 40 57 10 22 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT W 11 W 11 16 40 57 10 21 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 12 P 12 16 40 57 10 21 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 13 S 13 16 40 57 10 21 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 14 D 14 16 40 57 10 21 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 15 S 15 16 40 57 3 18 29 40 50 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 16 V 16 16 40 57 3 20 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 17 P 17 16 40 57 3 4 9 46 52 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 18 A 18 16 40 57 10 22 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT G 19 G 19 20 40 57 11 16 28 42 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT F 20 F 20 20 40 57 11 21 36 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 21 A 21 20 40 57 11 21 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT L 22 L 22 20 40 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT M 23 M 23 20 40 57 10 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT E 24 E 24 20 40 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT G 25 G 25 20 40 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT Q 26 Q 26 20 40 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT T 27 T 27 20 40 57 8 19 36 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT F 28 F 28 20 40 57 9 20 36 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 29 D 29 20 40 57 11 23 36 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT K 30 K 30 20 40 57 10 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 31 S 31 20 40 57 10 21 36 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 32 A 32 20 40 57 10 21 36 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT Y 33 Y 33 20 40 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 34 P 34 20 40 57 10 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT K 35 K 35 20 40 57 10 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT L 36 L 36 20 40 57 10 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 37 A 37 20 40 57 10 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 38 V 38 20 40 57 10 18 34 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 39 A 39 19 40 57 3 12 16 28 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT Y 40 Y 40 16 40 57 3 19 36 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 41 P 41 4 39 57 0 3 4 5 5 6 15 17 31 34 57 57 57 57 57 57 57 57 57 57 LCS_GDT S 42 S 42 4 39 57 1 3 4 5 11 23 32 49 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT G 43 G 43 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 44 V 44 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT I 45 I 45 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT P 46 P 46 15 39 57 5 22 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT D 47 D 47 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT M 48 M 48 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 49 R 49 15 39 57 9 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT F 209 F 209 15 39 57 6 21 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT N 210 N 210 15 39 57 8 22 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT Y 211 Y 211 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT I 212 I 212 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT V 213 V 213 15 39 57 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT R 214 R 214 15 39 57 11 21 35 45 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT L 215 L 215 15 39 57 11 21 30 44 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_GDT A 216 A 216 15 39 57 3 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 LCS_AVERAGE LCS_A: 66.29 ( 29.21 69.65 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 23 37 47 53 55 55 55 55 56 57 57 57 57 57 57 57 57 57 57 GDT PERCENT_AT 19.30 40.35 64.91 82.46 92.98 96.49 96.49 96.49 96.49 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.29 0.66 1.06 1.29 1.48 1.54 1.54 1.54 1.54 1.83 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 GDT RMS_ALL_AT 3.26 2.46 2.27 2.19 2.19 2.20 2.20 2.20 2.20 2.15 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 1 S 1 1.527 2 0.600 0.600 1.527 86.071 57.381 LGA S 2 S 2 2.090 2 0.128 0.128 2.442 68.929 45.952 LGA Y 3 Y 3 2.128 8 0.023 0.023 2.128 68.810 22.937 LGA P 4 P 4 0.943 3 0.026 0.026 1.330 88.214 50.408 LGA I 5 I 5 0.773 4 0.030 0.030 1.077 88.214 44.107 LGA G 6 G 6 1.483 0 0.089 0.089 1.952 79.286 79.286 LGA A 7 A 7 1.209 1 0.047 0.047 1.209 90.595 72.476 LGA P 8 P 8 1.089 3 0.025 0.025 1.370 81.429 46.531 LGA I 9 I 9 1.441 4 0.268 0.268 1.441 83.690 41.845 LGA P 10 P 10 0.747 3 0.210 0.210 1.432 88.214 50.408 LGA W 11 W 11 0.949 10 0.046 0.046 0.949 90.476 25.850 LGA P 12 P 12 1.288 3 0.021 0.021 1.487 81.429 46.531 LGA S 13 S 13 1.539 2 0.142 0.142 1.539 77.143 51.429 LGA D 14 D 14 1.541 4 0.024 0.024 2.077 70.833 35.417 LGA S 15 S 15 2.914 2 0.247 0.247 2.914 64.881 43.254 LGA V 16 V 16 1.428 3 0.106 0.106 1.823 77.143 44.082 LGA P 17 P 17 2.378 3 0.706 0.706 4.176 59.881 34.218 LGA A 18 A 18 0.929 1 0.081 0.081 3.140 75.952 60.762 LGA G 19 G 19 2.649 0 0.107 0.107 2.766 60.952 60.952 LGA F 20 F 20 1.767 7 0.041 0.041 2.068 70.833 25.758 LGA A 21 A 21 1.317 1 0.033 0.033 1.516 79.286 63.429 LGA L 22 L 22 0.843 4 0.057 0.057 1.048 88.214 44.107 LGA M 23 M 23 1.071 4 0.149 0.149 1.071 88.214 44.107 LGA E 24 E 24 1.243 5 0.040 0.040 1.323 81.429 36.190 LGA G 25 G 25 1.254 0 0.027 0.027 1.642 77.143 77.143 LGA Q 26 Q 26 1.488 5 0.159 0.159 1.544 79.286 35.238 LGA T 27 T 27 2.029 3 0.033 0.033 2.029 68.810 39.320 LGA F 28 F 28 1.904 7 0.029 0.029 1.952 72.857 26.494 LGA D 29 D 29 1.769 4 0.087 0.087 1.828 75.000 37.500 LGA K 30 K 30 1.432 5 0.031 0.031 1.647 77.143 34.286 LGA S 31 S 31 2.257 2 0.018 0.018 2.257 64.762 43.175 LGA A 32 A 32 2.166 1 0.073 0.073 2.166 68.810 55.048 LGA Y 33 Y 33 0.802 8 0.045 0.045 1.180 92.976 30.992 LGA P 34 P 34 0.483 3 0.064 0.064 0.826 97.619 55.782 LGA K 35 K 35 0.948 5 0.040 0.040 1.492 85.952 38.201 LGA L 36 L 36 1.160 4 0.081 0.081 1.565 81.548 40.774 LGA A 37 A 37 1.094 1 0.116 0.116 1.422 83.690 66.952 LGA V 38 V 38 2.365 3 0.096 0.096 2.659 64.881 37.075 LGA A 39 A 39 2.819 1 0.046 0.046 2.819 60.952 48.762 LGA Y 40 Y 40 1.806 8 0.534 0.534 3.450 67.143 22.381 LGA P 41 P 41 9.180 3 0.035 0.035 9.204 3.095 1.769 LGA S 42 S 42 7.737 2 0.482 0.482 8.191 20.119 13.413 LGA G 43 G 43 1.083 0 0.541 0.541 3.613 69.762 69.762 LGA V 44 V 44 0.767 3 0.094 0.094 1.147 88.214 50.408 LGA I 45 I 45 0.767 4 0.109 0.109 0.834 92.857 46.429 LGA P 46 P 46 0.915 3 0.021 0.021 0.921 90.476 51.701 LGA D 47 D 47 0.384 4 0.097 0.097 1.005 92.976 46.488 LGA M 48 M 48 1.021 4 0.048 0.048 1.083 85.952 42.976 LGA R 49 R 49 0.721 7 0.020 0.020 0.983 90.476 32.900 LGA F 209 F 209 1.583 7 0.050 0.050 1.583 77.143 28.052 LGA N 210 N 210 0.682 4 0.147 0.147 1.552 86.071 43.036 LGA Y 211 Y 211 0.596 8 0.124 0.124 0.619 92.857 30.952 LGA I 212 I 212 0.898 4 0.069 0.069 1.066 85.952 42.976 LGA V 213 V 213 1.610 3 0.020 0.020 1.795 75.000 42.857 LGA R 214 R 214 2.208 7 0.024 0.024 2.324 64.762 23.550 LGA L 215 L 215 2.452 4 0.139 0.139 2.452 70.952 35.476 LGA A 216 A 216 1.121 2 0.685 0.685 2.820 73.214 48.810 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 57 228 228 100.00 436 228 52.29 57 SUMMARY(RMSD_GDC): 2.134 2.058 2.058 76.642 43.300 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 57 57 4.0 55 1.54 79.825 82.548 3.344 LGA_LOCAL RMSD: 1.545 Number of atoms: 55 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.198 Number of assigned atoms: 57 Std_ASGN_ATOMS RMSD: 2.134 Standard rmsd on all 57 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.592770 * X + -0.741855 * Y + -0.313489 * Z + 64.195366 Y_new = -0.781284 * X + -0.624176 * Y + -0.000234 * Z + 14.544047 Z_new = -0.195499 * X + 0.245062 * Y + -0.949592 * Z + 26.351715 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.921743 0.196766 2.889032 [DEG: -52.8120 11.2739 165.5293 ] ZXZ: -1.570051 2.822728 -0.673368 [DEG: -89.9573 161.7304 -38.5812 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0629AL396_1-D1 REMARK 2: T0629-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0629AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 57 57 4.0 55 1.54 82.548 2.13 REMARK ---------------------------------------------------------- MOLECULE T0629AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1ocy_A ATOM 1 N SER 1 23.970 4.166 -25.320 1.00 0.00 N ATOM 2 CA SER 1 22.814 4.411 -24.497 1.00 0.00 C ATOM 3 C SER 1 22.580 3.275 -23.516 1.00 0.00 C ATOM 4 O SER 1 22.367 3.521 -22.315 1.00 0.00 O ATOM 5 N SER 2 22.644 2.034 -24.004 1.00 0.00 N ATOM 6 CA SER 2 22.330 0.872 -23.203 1.00 0.00 C ATOM 7 C SER 2 23.417 0.609 -22.147 1.00 0.00 C ATOM 8 O SER 2 23.088 0.369 -20.995 1.00 0.00 O ATOM 9 N TYR 3 24.687 0.656 -22.551 1.00 0.00 N ATOM 10 CA TYR 3 25.808 0.576 -21.602 1.00 0.00 C ATOM 11 C TYR 3 26.842 1.631 -21.953 1.00 0.00 C ATOM 12 O TYR 3 27.635 1.424 -22.873 1.00 0.00 O ATOM 13 N PRO 4 26.825 2.768 -21.264 1.00 0.00 N ATOM 14 CA PRO 4 27.777 3.833 -21.601 1.00 0.00 C ATOM 15 C PRO 4 29.222 3.502 -21.270 1.00 0.00 C ATOM 16 O PRO 4 29.529 2.910 -20.236 1.00 0.00 O ATOM 17 N ILE 5 30.117 3.892 -22.176 1.00 0.00 N ATOM 18 CA ILE 5 31.546 3.809 -21.883 1.00 0.00 C ATOM 19 C ILE 5 31.825 4.595 -20.601 1.00 0.00 C ATOM 20 O ILE 5 31.349 5.740 -20.454 1.00 0.00 O ATOM 21 N GLY 6 32.579 3.989 -19.667 1.00 0.00 N ATOM 22 CA GLY 6 32.751 4.551 -18.326 1.00 0.00 C ATOM 23 C GLY 6 32.061 3.732 -17.225 1.00 0.00 C ATOM 24 O GLY 6 32.313 3.945 -16.012 1.00 0.00 O ATOM 25 N ALA 7 31.146 2.860 -17.640 1.00 0.00 N ATOM 26 CA ALA 7 30.399 2.034 -16.685 1.00 0.00 C ATOM 27 C ALA 7 31.251 0.883 -16.180 1.00 0.00 C ATOM 28 O ALA 7 32.086 0.348 -16.920 1.00 0.00 O ATOM 29 N PRO 8 30.993 0.494 -14.929 1.00 0.00 N ATOM 30 CA PRO 8 31.739 -0.590 -14.273 1.00 0.00 C ATOM 31 C PRO 8 30.784 -1.639 -13.760 1.00 0.00 C ATOM 32 O PRO 8 29.778 -1.306 -13.131 1.00 0.00 O ATOM 33 N ILE 9 31.107 -2.911 -14.022 1.00 0.00 N ATOM 34 CA ILE 9 30.359 -3.996 -13.408 1.00 0.00 C ATOM 35 C ILE 9 31.336 -5.072 -12.973 1.00 0.00 C ATOM 36 O ILE 9 32.558 -4.824 -12.913 1.00 0.00 O ATOM 37 N PRO 10 30.804 -6.234 -12.609 1.00 0.00 N ATOM 38 CA PRO 10 31.641 -7.323 -12.085 1.00 0.00 C ATOM 39 C PRO 10 31.730 -8.439 -13.122 1.00 0.00 C ATOM 40 O PRO 10 30.961 -8.468 -14.102 1.00 0.00 O ATOM 41 N TRP 11 32.723 -9.297 -12.938 1.00 0.00 N ATOM 42 CA TRP 11 33.027 -10.343 -13.907 1.00 0.00 C ATOM 43 C TRP 11 33.411 -11.588 -13.139 1.00 0.00 C ATOM 44 O TRP 11 34.233 -11.525 -12.223 1.00 0.00 O ATOM 45 N PRO 12 32.832 -12.724 -13.547 1.00 0.00 N ATOM 46 CA PRO 12 32.924 -13.952 -12.776 1.00 0.00 C ATOM 47 C PRO 12 34.022 -14.920 -13.226 1.00 0.00 C ATOM 48 O PRO 12 34.084 -16.048 -12.724 1.00 0.00 O ATOM 49 N SER 13 34.903 -14.473 -14.125 1.00 0.00 N ATOM 50 CA SER 13 35.997 -15.319 -14.593 1.00 0.00 C ATOM 51 C SER 13 37.320 -14.561 -14.680 1.00 0.00 C ATOM 52 O SER 13 37.431 -13.430 -14.172 1.00 0.00 O ATOM 53 N ASP 14 38.340 -15.176 -15.278 1.00 0.00 N ATOM 54 CA ASP 14 39.681 -14.592 -15.275 1.00 0.00 C ATOM 55 C ASP 14 40.130 -13.927 -16.556 1.00 0.00 C ATOM 56 O ASP 14 41.163 -13.228 -16.561 1.00 0.00 O ATOM 57 N SER 15 39.386 -14.147 -17.639 1.00 0.00 N ATOM 58 CA SER 15 39.710 -13.462 -18.892 1.00 0.00 C ATOM 59 C SER 15 38.470 -12.924 -19.547 1.00 0.00 C ATOM 60 O SER 15 37.357 -13.382 -19.245 1.00 0.00 O ATOM 61 N VAL 16 38.644 -11.954 -20.455 1.00 0.00 N ATOM 62 CA VAL 16 37.496 -11.303 -21.099 1.00 0.00 C ATOM 63 C VAL 16 37.386 -11.712 -22.570 1.00 0.00 C ATOM 64 O VAL 16 38.410 -11.887 -23.217 1.00 0.00 O ATOM 65 N PRO 17 36.171 -11.867 -23.089 1.00 0.00 N ATOM 66 CA PRO 17 35.987 -12.341 -24.487 1.00 0.00 C ATOM 67 C PRO 17 36.127 -11.266 -25.579 1.00 0.00 C ATOM 68 O PRO 17 36.241 -11.645 -26.769 1.00 0.00 O ATOM 69 N ALA 18 36.103 -9.978 -25.223 1.00 0.00 N ATOM 70 CA ALA 18 36.214 -8.921 -26.237 1.00 0.00 C ATOM 71 C ALA 18 36.858 -7.684 -25.676 1.00 0.00 C ATOM 72 O ALA 18 36.877 -7.460 -24.452 1.00 0.00 O ATOM 73 N GLY 19 35.821 -4.700 -25.880 1.00 0.00 N ATOM 74 CA GLY 19 34.894 -3.627 -25.492 1.00 0.00 C ATOM 75 C GLY 19 35.051 -3.284 -24.017 1.00 0.00 C ATOM 76 O GLY 19 34.772 -2.165 -23.617 1.00 0.00 O ATOM 77 N PHE 20 35.456 -4.278 -23.222 1.00 0.00 N ATOM 78 CA PHE 20 35.633 -4.110 -21.759 1.00 0.00 C ATOM 79 C PHE 20 37.077 -4.369 -21.400 1.00 0.00 C ATOM 80 O PHE 20 37.794 -5.106 -22.110 1.00 0.00 O ATOM 81 N ALA 21 37.539 -3.763 -20.295 1.00 0.00 N ATOM 82 CA ALA 21 38.867 -4.054 -19.756 1.00 0.00 C ATOM 83 C ALA 21 38.760 -4.306 -18.266 1.00 0.00 C ATOM 84 O ALA 21 37.837 -3.800 -17.592 1.00 0.00 O ATOM 85 N LEU 22 39.703 -5.065 -17.726 1.00 0.00 N ATOM 86 CA LEU 22 39.735 -5.211 -16.246 1.00 0.00 C ATOM 87 C LEU 22 40.138 -3.919 -15.548 1.00 0.00 C ATOM 88 O LEU 22 40.980 -3.166 -16.039 1.00 0.00 O ATOM 89 N MET 23 39.569 -3.691 -14.376 1.00 0.00 N ATOM 90 CA MET 23 40.054 -2.605 -13.519 1.00 0.00 C ATOM 91 C MET 23 41.257 -3.100 -12.717 1.00 0.00 C ATOM 92 O MET 23 41.185 -3.325 -11.485 1.00 0.00 O ATOM 93 N GLU 24 42.364 -3.292 -13.421 1.00 0.00 N ATOM 94 CA GLU 24 43.614 -3.755 -12.800 1.00 0.00 C ATOM 95 C GLU 24 44.721 -2.708 -12.978 1.00 0.00 C ATOM 96 O GLU 24 45.905 -3.031 -12.887 1.00 0.00 O ATOM 97 N GLY 25 44.341 -1.464 -13.245 1.00 0.00 N ATOM 98 CA GLY 25 45.318 -0.398 -13.357 1.00 0.00 C ATOM 99 C GLY 25 46.084 -0.320 -14.655 1.00 0.00 C ATOM 100 O GLY 25 47.117 0.382 -14.707 1.00 0.00 O ATOM 101 N GLN 26 45.589 -0.966 -15.701 1.00 0.00 N ATOM 102 CA GLN 26 46.230 -0.739 -17.015 1.00 0.00 C ATOM 103 C GLN 26 46.018 0.648 -17.638 1.00 0.00 C ATOM 104 O GLN 26 45.669 1.656 -16.977 1.00 0.00 O ATOM 105 N THR 27 46.291 0.720 -18.943 1.00 0.00 N ATOM 106 CA THR 27 45.856 1.884 -19.739 1.00 0.00 C ATOM 107 C THR 27 45.130 1.417 -20.980 1.00 0.00 C ATOM 108 O THR 27 45.212 0.227 -21.360 1.00 0.00 O ATOM 109 N PHE 28 44.417 2.352 -21.600 1.00 0.00 N ATOM 110 CA PHE 28 43.858 2.131 -22.935 1.00 0.00 C ATOM 111 C PHE 28 44.463 3.159 -23.862 1.00 0.00 C ATOM 112 O PHE 28 44.974 4.180 -23.412 1.00 0.00 O ATOM 113 N ASP 29 44.363 2.896 -25.163 1.00 0.00 N ATOM 114 CA ASP 29 44.751 3.897 -26.164 1.00 0.00 C ATOM 115 C ASP 29 43.585 4.856 -26.417 1.00 0.00 C ATOM 116 O ASP 29 42.463 4.423 -26.658 1.00 0.00 O ATOM 117 N LYS 30 43.846 6.167 -26.388 1.00 0.00 N ATOM 118 CA LYS 30 42.800 7.159 -26.647 1.00 0.00 C ATOM 119 C LYS 30 42.236 7.088 -28.071 1.00 0.00 C ATOM 120 O LYS 30 41.065 7.405 -28.291 1.00 0.00 O ATOM 121 N SER 31 43.071 6.710 -29.028 1.00 0.00 N ATOM 122 CA SER 31 42.558 6.577 -30.398 1.00 0.00 C ATOM 123 C SER 31 41.671 5.345 -30.556 1.00 0.00 C ATOM 124 O SER 31 40.656 5.409 -31.269 1.00 0.00 O ATOM 125 N ALA 32 42.017 4.265 -29.843 1.00 0.00 N ATOM 126 CA ALA 32 41.224 3.022 -29.794 1.00 0.00 C ATOM 127 C ALA 32 39.908 3.268 -29.035 1.00 0.00 C ATOM 128 O ALA 32 38.844 2.753 -29.415 1.00 0.00 O ATOM 129 N TYR 33 39.983 4.106 -27.997 1.00 0.00 N ATOM 130 CA TYR 33 38.873 4.310 -27.039 1.00 0.00 C ATOM 131 C TYR 33 38.553 5.790 -26.827 1.00 0.00 C ATOM 132 O TYR 33 38.705 6.319 -25.709 1.00 0.00 O ATOM 133 N PRO 34 38.102 6.480 -27.871 1.00 0.00 N ATOM 134 CA PRO 34 37.916 7.935 -27.782 1.00 0.00 C ATOM 135 C PRO 34 36.863 8.404 -26.778 1.00 0.00 C ATOM 136 O PRO 34 37.039 9.511 -26.212 1.00 0.00 O ATOM 137 N LYS 35 35.805 7.613 -26.539 1.00 0.00 N ATOM 138 CA LYS 35 34.793 8.028 -25.565 1.00 0.00 C ATOM 139 C LYS 35 35.322 7.837 -24.145 1.00 0.00 C ATOM 140 O LYS 35 34.952 8.590 -23.255 1.00 0.00 O ATOM 141 N LEU 36 36.181 6.836 -23.941 1.00 0.00 N ATOM 142 CA LEU 36 36.800 6.678 -22.633 1.00 0.00 C ATOM 143 C LEU 36 37.742 7.854 -22.396 1.00 0.00 C ATOM 144 O LEU 36 37.735 8.482 -21.348 1.00 0.00 O ATOM 145 N ALA 37 38.539 8.176 -23.411 1.00 0.00 N ATOM 146 CA ALA 37 39.444 9.297 -23.299 1.00 0.00 C ATOM 147 C ALA 37 38.699 10.606 -22.992 1.00 0.00 C ATOM 148 O ALA 37 39.135 11.381 -22.134 1.00 0.00 O ATOM 149 N VAL 38 37.564 10.845 -23.654 1.00 0.00 N ATOM 150 CA VAL 38 36.824 12.090 -23.420 1.00 0.00 C ATOM 151 C VAL 38 36.044 12.130 -22.101 1.00 0.00 C ATOM 152 O VAL 38 35.972 13.199 -21.471 1.00 0.00 O ATOM 153 N ALA 39 35.459 11.003 -21.683 1.00 0.00 N ATOM 154 CA ALA 39 34.608 10.987 -20.478 1.00 0.00 C ATOM 155 C ALA 39 35.409 10.814 -19.195 1.00 0.00 C ATOM 156 O ALA 39 35.027 11.337 -18.134 1.00 0.00 O ATOM 157 N TYR 40 36.493 10.055 -19.285 1.00 0.00 N ATOM 158 CA TYR 40 37.250 9.681 -18.087 1.00 0.00 C ATOM 159 C TYR 40 38.588 10.389 -18.042 1.00 0.00 C ATOM 160 O TYR 40 39.058 10.748 -16.969 1.00 0.00 O ATOM 161 N PRO 41 46.977 10.556 -24.082 1.00 0.00 N ATOM 162 CA PRO 41 47.099 9.613 -25.193 1.00 0.00 C ATOM 163 C PRO 41 46.825 8.180 -24.790 1.00 0.00 C ATOM 164 O PRO 41 46.393 7.374 -25.626 1.00 0.00 O ATOM 165 N SER 42 47.106 7.854 -23.523 1.00 0.00 N ATOM 166 CA SER 42 46.878 6.511 -23.006 1.00 0.00 C ATOM 167 C SER 42 46.255 6.595 -21.607 1.00 0.00 C ATOM 168 O SER 42 46.936 6.462 -20.594 1.00 0.00 O ATOM 169 N GLY 43 44.964 6.883 -21.565 1.00 0.00 N ATOM 170 CA GLY 43 44.253 7.053 -20.278 1.00 0.00 C ATOM 171 C GLY 43 44.336 5.837 -19.345 1.00 0.00 C ATOM 172 O GLY 43 44.259 4.693 -19.792 1.00 0.00 O ATOM 173 N VAL 44 44.470 6.094 -18.050 1.00 0.00 N ATOM 174 CA VAL 44 44.539 5.026 -17.079 1.00 0.00 C ATOM 175 C VAL 44 43.186 4.392 -16.782 1.00 0.00 C ATOM 176 O VAL 44 42.122 5.030 -16.871 1.00 0.00 O ATOM 177 N ILE 45 43.247 3.098 -16.463 1.00 0.00 N ATOM 178 CA ILE 45 42.105 2.332 -15.950 1.00 0.00 C ATOM 179 C ILE 45 42.161 2.317 -14.406 1.00 0.00 C ATOM 180 O ILE 45 43.265 2.331 -13.793 1.00 0.00 O ATOM 181 N PRO 46 41.006 2.250 -13.749 1.00 0.00 N ATOM 182 CA PRO 46 41.029 2.082 -12.286 1.00 0.00 C ATOM 183 C PRO 46 41.768 0.801 -11.880 1.00 0.00 C ATOM 184 O PRO 46 41.754 -0.176 -12.637 1.00 0.00 O ATOM 185 N ASP 47 42.397 0.804 -10.695 1.00 0.00 N ATOM 186 CA ASP 47 42.972 -0.425 -10.137 1.00 0.00 C ATOM 187 C ASP 47 42.186 -0.783 -8.879 1.00 0.00 C ATOM 188 O ASP 47 42.458 -0.281 -7.764 1.00 0.00 O ATOM 189 N MET 48 41.150 -1.579 -9.100 1.00 0.00 N ATOM 190 CA MET 48 40.247 -1.954 -8.029 1.00 0.00 C ATOM 191 C MET 48 40.585 -3.290 -7.394 1.00 0.00 C ATOM 192 O MET 48 39.806 -3.784 -6.584 1.00 0.00 O ATOM 193 N ARG 49 41.756 -3.856 -7.716 1.00 0.00 N ATOM 194 CA ARG 49 42.134 -5.143 -7.137 1.00 0.00 C ATOM 195 C ARG 49 42.272 -5.016 -5.615 1.00 0.00 C ATOM 196 O ARG 49 43.006 -4.167 -5.123 1.00 0.00 O ATOM 685 N PHE 209 35.696 -10.811 -6.838 1.00 0.00 N ATOM 686 CA PHE 209 35.379 -10.912 -8.259 1.00 0.00 C ATOM 687 C PHE 209 36.253 -9.918 -9.017 1.00 0.00 C ATOM 688 O PHE 209 36.842 -9.021 -8.426 1.00 0.00 O ATOM 689 N ASN 210 36.317 -10.040 -10.350 1.00 0.00 N ATOM 690 CA ASN 210 36.967 -8.968 -11.097 1.00 0.00 C ATOM 691 C ASN 210 35.989 -7.824 -11.331 1.00 0.00 C ATOM 692 O ASN 210 34.778 -8.041 -11.496 1.00 0.00 O ATOM 693 N TYR 211 36.492 -6.593 -11.355 1.00 0.00 N ATOM 694 CA TYR 211 35.684 -5.474 -11.869 1.00 0.00 C ATOM 695 C TYR 211 36.137 -5.186 -13.298 1.00 0.00 C ATOM 696 O TYR 211 37.330 -5.328 -13.646 1.00 0.00 O ATOM 697 N ILE 212 35.159 -4.867 -14.135 1.00 0.00 N ATOM 698 CA ILE 212 35.433 -4.538 -15.547 1.00 0.00 C ATOM 699 C ILE 212 34.813 -3.210 -15.888 1.00 0.00 C ATOM 700 O ILE 212 33.772 -2.827 -15.328 1.00 0.00 O ATOM 701 N VAL 213 35.480 -2.477 -16.786 1.00 0.00 N ATOM 702 CA VAL 213 35.009 -1.154 -17.201 1.00 0.00 C ATOM 703 C VAL 213 34.812 -1.134 -18.718 1.00 0.00 C ATOM 704 O VAL 213 35.609 -1.732 -19.452 1.00 0.00 O ATOM 705 N ARG 214 33.724 -0.497 -19.153 1.00 0.00 N ATOM 706 CA ARG 214 33.400 -0.400 -20.584 1.00 0.00 C ATOM 707 C ARG 214 34.259 0.700 -21.221 1.00 0.00 C ATOM 708 O ARG 214 34.191 1.867 -20.814 1.00 0.00 O ATOM 709 N LEU 215 35.060 0.335 -22.233 1.00 0.00 N ATOM 710 CA LEU 215 36.021 1.308 -22.784 1.00 0.00 C ATOM 711 C LEU 215 35.751 1.670 -24.233 1.00 0.00 C ATOM 712 O LEU 215 36.203 2.701 -24.677 1.00 0.00 O ATOM 713 N ALA 216 35.019 0.829 -24.951 1.00 0.00 N ATOM 714 CA ALA 216 34.664 1.179 -26.332 1.00 0.00 C ATOM 715 C ALA 216 33.464 0.400 -26.764 1.00 0.00 C ATOM 716 O ALA 216 33.089 -0.571 -26.118 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 228 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 42.49 79.4 97 86.6 112 ARMSMC SECONDARY STRUCTURE . . 20.92 87.5 24 70.6 34 ARMSMC SURFACE . . . . . . . . 39.25 78.7 75 89.3 84 ARMSMC BURIED . . . . . . . . 52.03 81.8 22 78.6 28 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 42 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 31 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.13 (Number of atoms: 57) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.13 57 100.0 57 CRMSCA CRN = ALL/NP . . . . . 0.0374 CRMSCA SECONDARY STRUCTURE . . 1.49 17 100.0 17 CRMSCA SURFACE . . . . . . . . 2.29 43 100.0 43 CRMSCA BURIED . . . . . . . . 1.57 14 100.0 14 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.06 228 81.1 281 CRMSMC SECONDARY STRUCTURE . . 1.51 68 80.0 85 CRMSMC SURFACE . . . . . . . . 2.18 172 80.8 213 CRMSMC BURIED . . . . . . . . 1.62 56 82.4 68 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 208 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 190 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 72 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 160 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 48 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.06 228 52.3 436 CRMSALL SECONDARY STRUCTURE . . 1.51 68 48.6 140 CRMSALL SURFACE . . . . . . . . 2.18 172 51.8 332 CRMSALL BURIED . . . . . . . . 1.62 56 53.8 104 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.700 1.000 0.500 57 100.0 57 ERRCA SECONDARY STRUCTURE . . 1.359 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 1.784 1.000 0.500 43 100.0 43 ERRCA BURIED . . . . . . . . 1.445 1.000 0.500 14 100.0 14 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.672 1.000 0.500 228 81.1 281 ERRMC SECONDARY STRUCTURE . . 1.388 1.000 0.500 68 80.0 85 ERRMC SURFACE . . . . . . . . 1.735 1.000 0.500 172 80.8 213 ERRMC BURIED . . . . . . . . 1.482 1.000 0.500 56 82.4 68 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 208 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 190 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 72 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 160 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 48 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.672 1.000 0.500 228 52.3 436 ERRALL SECONDARY STRUCTURE . . 1.388 1.000 0.500 68 48.6 140 ERRALL SURFACE . . . . . . . . 1.735 1.000 0.500 172 51.8 332 ERRALL BURIED . . . . . . . . 1.482 1.000 0.500 56 53.8 104 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 13 46 54 55 57 57 57 DISTCA CA (P) 22.81 80.70 94.74 96.49 100.00 57 DISTCA CA (RMS) 0.73 1.33 1.58 1.62 2.13 DISTCA ALL (N) 54 177 215 222 228 228 436 DISTALL ALL (P) 12.39 40.60 49.31 50.92 52.29 436 DISTALL ALL (RMS) 0.77 1.29 1.56 1.67 2.06 DISTALL END of the results output