####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 28 ( 194), selected 28 , name T0628TS316_1_3-D1 # Molecule2: number of CA atoms 144 ( 1097), selected 28 , name T0628-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0628TS316_1_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 279 - 295 0.48 14.30 LCS_AVERAGE: 10.17 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 279 - 295 0.48 14.30 LCS_AVERAGE: 9.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 279 - 295 0.48 14.30 LCS_AVERAGE: 9.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 28 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 122 E 122 8 10 11 7 8 8 8 9 9 9 10 10 11 14 16 17 17 18 18 18 18 20 21 LCS_GDT E 123 E 123 8 10 11 7 8 8 8 9 9 9 10 10 11 14 16 17 17 18 18 18 18 20 21 LCS_GDT T 124 T 124 8 10 11 7 8 8 8 9 9 9 10 10 10 12 16 17 17 18 18 18 18 20 21 LCS_GDT Q 125 Q 125 8 10 11 7 8 8 8 9 9 9 10 10 11 14 16 17 17 18 18 18 18 20 21 LCS_GDT L 126 L 126 8 10 11 7 8 8 8 9 9 9 10 10 11 14 16 17 17 18 18 18 18 20 21 LCS_GDT L 127 L 127 8 10 11 7 8 8 8 9 9 9 10 10 11 14 16 17 17 18 18 18 18 20 21 LCS_GDT G 128 G 128 8 10 11 7 8 8 8 9 9 9 10 10 10 14 16 17 17 18 18 18 18 20 21 LCS_GDT A 129 A 129 8 10 11 7 8 8 8 9 9 9 10 10 11 14 16 17 17 18 18 18 18 20 21 LCS_GDT R 130 R 130 4 10 11 3 5 5 7 9 9 9 10 10 11 14 16 17 17 18 18 19 19 20 21 LCS_GDT A 131 A 131 4 10 11 3 5 5 6 7 7 9 10 10 11 14 16 17 17 18 18 19 19 20 21 LCS_GDT L 132 L 132 4 5 11 3 5 5 6 7 7 7 8 9 11 14 16 17 17 18 18 18 18 20 21 LCS_GDT D 279 D 279 17 17 17 8 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 20 LCS_GDT T 280 T 280 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 20 LCS_GDT A 281 A 281 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 20 LCS_GDT F 282 F 282 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 20 LCS_GDT Q 283 Q 283 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 20 21 LCS_GDT T 284 T 284 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 21 LCS_GDT G 285 G 285 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 20 21 LCS_GDT I 286 I 286 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 LCS_GDT R 287 R 287 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 LCS_GDT S 288 S 288 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 LCS_GDT I 289 I 289 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 LCS_GDT A 290 A 290 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 LCS_GDT Y 291 Y 291 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 LCS_GDT A 292 A 292 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 LCS_GDT V 293 V 293 17 17 17 6 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 20 LCS_GDT A 294 A 294 17 17 17 13 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 20 LCS_GDT N 295 N 295 17 17 17 6 17 17 17 17 17 17 17 17 17 17 17 17 17 17 18 19 19 19 20 LCS_AVERAGE LCS_A: 9.66 ( 9.05 9.77 10.17 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 17 17 17 17 17 17 17 17 17 17 17 17 17 18 18 19 19 20 21 GDT PERCENT_AT 9.03 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 12.50 12.50 13.19 13.19 13.89 14.58 GDT RMS_LOCAL 0.26 0.48 0.48 0.48 0.48 0.48 0.48 0.48 0.48 0.48 0.48 0.48 0.48 0.48 4.99 3.63 4.82 4.82 6.05 6.42 GDT RMS_ALL_AT 14.19 14.30 14.30 14.30 14.30 14.30 14.30 14.30 14.30 14.30 14.30 14.30 14.30 14.30 10.96 12.81 11.94 11.94 10.24 9.98 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 122 E 122 28.055 4 0.127 0.140 29.208 0.000 0.000 LGA E 123 E 123 23.955 4 0.058 0.079 25.544 0.000 0.000 LGA T 124 T 124 23.306 2 0.029 0.032 24.158 0.000 0.000 LGA Q 125 Q 125 25.368 4 0.033 0.042 26.957 0.000 0.000 LGA L 126 L 126 22.484 3 0.064 0.065 23.556 0.000 0.000 LGA L 127 L 127 20.500 3 0.116 0.119 21.372 0.000 0.000 LGA G 128 G 128 22.966 0 0.210 0.210 23.391 0.000 0.000 LGA A 129 A 129 22.539 0 0.636 0.608 22.883 0.000 0.000 LGA R 130 R 130 18.764 6 0.070 0.070 19.642 0.000 0.000 LGA A 131 A 131 17.242 0 0.043 0.049 20.733 0.000 0.000 LGA L 132 L 132 23.789 3 0.073 0.071 28.331 0.000 0.000 LGA D 279 D 279 0.745 3 0.101 0.103 1.278 92.857 56.607 LGA T 280 T 280 0.412 2 0.015 0.023 0.688 97.619 68.707 LGA A 281 A 281 0.236 0 0.021 0.039 0.299 100.000 100.000 LGA F 282 F 282 0.452 6 0.031 0.029 0.622 100.000 44.589 LGA Q 283 Q 283 0.208 4 0.000 0.000 0.465 100.000 55.556 LGA T 284 T 284 0.287 2 0.020 0.023 0.458 100.000 71.429 LGA G 285 G 285 0.252 0 0.062 0.062 0.391 100.000 100.000 LGA I 286 I 286 0.547 3 0.009 0.033 0.609 92.857 57.738 LGA R 287 R 287 0.489 6 0.013 0.016 0.491 100.000 45.455 LGA S 288 S 288 0.389 1 0.033 0.037 0.464 100.000 83.333 LGA I 289 I 289 0.379 3 0.065 0.079 0.513 100.000 61.310 LGA A 290 A 290 0.436 0 0.037 0.033 0.545 97.619 98.095 LGA Y 291 Y 291 0.304 7 0.032 0.040 0.304 100.000 41.667 LGA A 292 A 292 0.331 0 0.013 0.026 0.549 100.000 98.095 LGA V 293 V 293 0.568 2 0.037 0.048 0.671 95.238 67.347 LGA A 294 A 294 0.427 0 0.151 0.154 1.682 90.833 90.762 LGA N 295 N 295 0.986 4 0.527 0.539 1.811 86.071 49.365 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 28 112 112 100.00 210 138 65.71 144 SUMMARY(RMSD_GDC): 8.810 8.688 8.804 11.480 8.264 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 28 144 4.0 17 0.48 11.979 11.364 2.944 LGA_LOCAL RMSD: 0.477 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.303 Number of assigned atoms: 28 Std_ASGN_ATOMS RMSD: 8.810 Standard rmsd on all 28 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.984880 * X + 0.024688 * Y + 0.171470 * Z + 83.375328 Y_new = 0.051234 * X + 0.987027 * Y + 0.152161 * Z + 119.266136 Z_new = -0.165489 * X + 0.158645 * Y + -0.973368 * Z + 23.173210 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.089619 0.166254 2.980027 [DEG: 177.0221 9.5257 170.7430 ] ZXZ: 2.296601 2.910287 -0.806509 [DEG: 131.5855 166.7471 -46.2096 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0628TS316_1_3-D1 REMARK 2: T0628-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0628TS316_1_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 28 144 4.0 17 0.48 11.364 8.81 REMARK ---------------------------------------------------------- MOLECULE T0628TS316_1_3-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 3 REMARK PFRMAT TS REMARK TARGET T0628 REMARK PARENT N/A ATOM 1 N GLU 122 83.375 119.266 23.173 1.00 0.00 N ATOM 2 CA GLU 122 81.939 119.341 22.932 1.00 0.00 C ATOM 3 C GLU 122 81.432 120.771 23.066 1.00 0.00 C ATOM 4 O GLU 122 80.691 121.260 22.214 1.00 0.00 O ATOM 5 CB GLU 122 81.185 118.423 23.897 1.00 0.00 C ATOM 6 CEN GLU 122 80.402 116.944 24.220 1.00 0.00 C ATOM 7 H GLU 122 83.728 118.699 23.917 1.00 0.00 H ATOM 8 N GLU 123 81.836 121.438 24.141 1.00 0.00 N ATOM 9 CA GLU 123 81.377 122.794 24.419 1.00 0.00 C ATOM 10 C GLU 123 81.653 123.720 23.243 1.00 0.00 C ATOM 11 O GLU 123 80.812 124.542 22.876 1.00 0.00 O ATOM 12 CB GLU 123 82.045 123.337 25.685 1.00 0.00 C ATOM 13 CEN GLU 123 81.994 123.669 27.355 1.00 0.00 C ATOM 14 H GLU 123 82.478 120.995 24.783 1.00 0.00 H ATOM 15 N THR 124 82.836 123.584 22.653 1.00 0.00 N ATOM 16 CA THR 124 83.227 124.411 21.518 1.00 0.00 C ATOM 17 C THR 124 82.283 124.210 20.339 1.00 0.00 C ATOM 18 O THR 124 81.824 125.174 19.726 1.00 0.00 O ATOM 19 CB THR 124 84.668 124.108 21.066 1.00 0.00 C ATOM 20 CEN THR 124 85.242 124.078 21.168 1.00 0.00 C ATOM 21 H THR 124 83.481 122.890 23.001 1.00 0.00 H ATOM 22 N GLN 125 81.996 122.950 20.025 1.00 0.00 N ATOM 23 CA GLN 125 81.113 122.619 18.914 1.00 0.00 C ATOM 24 C GLN 125 79.735 123.242 19.100 1.00 0.00 C ATOM 25 O GLN 125 79.140 123.753 18.151 1.00 0.00 O ATOM 26 CB GLN 125 80.979 121.101 18.769 1.00 0.00 C ATOM 27 CEN GLN 125 81.525 119.706 17.874 1.00 0.00 C ATOM 28 H GLN 125 82.400 122.203 20.573 1.00 0.00 H ATOM 29 N LEU 126 79.233 123.197 20.329 1.00 0.00 N ATOM 30 CA LEU 126 77.918 123.746 20.641 1.00 0.00 C ATOM 31 C LEU 126 77.890 125.255 20.438 1.00 0.00 C ATOM 32 O LEU 126 76.866 125.820 20.052 1.00 0.00 O ATOM 33 CB LEU 126 77.523 123.393 22.080 1.00 0.00 C ATOM 34 CEN LEU 126 76.544 122.360 22.672 1.00 0.00 C ATOM 35 H LEU 126 79.775 122.771 21.067 1.00 0.00 H ATOM 36 N LEU 127 79.020 125.903 20.700 1.00 0.00 N ATOM 37 CA LEU 127 79.132 127.347 20.529 1.00 0.00 C ATOM 38 C LEU 127 79.052 127.735 19.058 1.00 0.00 C ATOM 39 O LEU 127 78.785 128.890 18.724 1.00 0.00 O ATOM 40 CB LEU 127 80.443 127.853 21.143 1.00 0.00 C ATOM 41 CEN LEU 127 80.763 128.609 22.447 1.00 0.00 C ATOM 42 H LEU 127 79.821 125.383 21.026 1.00 0.00 H ATOM 43 N GLY 128 79.284 126.763 18.181 1.00 0.00 N ATOM 44 CA GLY 128 79.259 127.007 16.744 1.00 0.00 C ATOM 45 C GLY 128 77.871 126.758 16.167 1.00 0.00 C ATOM 46 O GLY 128 77.624 127.013 14.989 1.00 0.00 O ATOM 47 CEN GLY 128 79.259 127.007 16.744 1.00 0.00 C ATOM 48 H GLY 128 79.481 125.833 18.520 1.00 0.00 H ATOM 49 N ALA 129 76.969 126.258 17.004 1.00 0.00 N ATOM 50 CA ALA 129 75.596 125.999 16.585 1.00 0.00 C ATOM 51 C ALA 129 74.752 127.265 16.650 1.00 0.00 C ATOM 52 O ALA 129 75.028 128.166 17.441 1.00 0.00 O ATOM 53 CB ALA 129 74.979 124.902 17.442 1.00 0.00 C ATOM 54 CEN ALA 129 74.980 124.903 17.442 1.00 0.00 C ATOM 55 H ALA 129 77.240 126.052 17.955 1.00 0.00 H ATOM 56 N ARG 130 73.722 127.327 15.813 1.00 0.00 N ATOM 57 CA ARG 130 72.911 128.531 15.682 1.00 0.00 C ATOM 58 C ARG 130 72.254 128.899 17.007 1.00 0.00 C ATOM 59 O ARG 130 71.861 130.046 17.218 1.00 0.00 O ATOM 60 CB ARG 130 71.886 128.415 14.565 1.00 0.00 C ATOM 61 CEN ARG 130 70.822 128.622 12.335 1.00 0.00 C ATOM 62 H ARG 130 73.495 126.518 15.253 1.00 0.00 H ATOM 63 N ALA 131 72.139 127.919 17.896 1.00 0.00 N ATOM 64 CA ALA 131 71.480 128.124 19.180 1.00 0.00 C ATOM 65 C ALA 131 72.286 129.061 20.071 1.00 0.00 C ATOM 66 O ALA 131 71.726 129.798 20.881 1.00 0.00 O ATOM 67 CB ALA 131 71.252 126.791 19.878 1.00 0.00 C ATOM 68 CEN ALA 131 71.252 126.792 19.878 1.00 0.00 C ATOM 69 H ALA 131 72.517 127.009 17.677 1.00 0.00 H ATOM 70 N LEU 132 73.605 129.027 19.913 1.00 0.00 N ATOM 71 CA LEU 132 74.496 129.832 20.742 1.00 0.00 C ATOM 72 C LEU 132 75.409 130.701 19.887 1.00 0.00 C ATOM 73 O LEU 132 76.087 131.594 20.394 1.00 0.00 O ATOM 74 CB LEU 132 75.326 128.927 21.661 1.00 0.00 C ATOM 75 CEN LEU 132 75.239 128.601 23.163 1.00 0.00 C ATOM 76 H LEU 132 74.001 128.429 19.202 1.00 0.00 H ATOM 621 N ASP 279 54.859 122.794 31.897 1.00 0.00 N ATOM 622 CA ASP 279 56.240 122.333 31.814 1.00 0.00 C ATOM 623 C ASP 279 56.460 121.469 30.578 1.00 0.00 C ATOM 624 O ASP 279 57.578 121.365 30.074 1.00 0.00 O ATOM 625 CB ASP 279 56.621 121.553 33.074 1.00 0.00 C ATOM 626 CEN ASP 279 57.095 121.686 33.967 1.00 0.00 C ATOM 627 H ASP 279 54.305 122.543 32.702 1.00 0.00 H ATOM 628 N THR 280 55.387 120.854 30.094 1.00 0.00 N ATOM 629 CA THR 280 55.475 119.932 28.968 1.00 0.00 C ATOM 630 C THR 280 55.951 120.646 27.708 1.00 0.00 C ATOM 631 O THR 280 56.858 120.175 27.022 1.00 0.00 O ATOM 632 CB THR 280 54.121 119.257 28.682 1.00 0.00 C ATOM 633 CEN THR 280 53.667 118.926 28.843 1.00 0.00 C ATOM 634 H THR 280 54.486 121.029 30.517 1.00 0.00 H ATOM 635 N ALA 281 55.334 121.784 27.410 1.00 0.00 N ATOM 636 CA ALA 281 55.737 122.598 26.269 1.00 0.00 C ATOM 637 C ALA 281 57.163 123.106 26.432 1.00 0.00 C ATOM 638 O ALA 281 57.956 123.073 25.491 1.00 0.00 O ATOM 639 CB ALA 281 54.774 123.760 26.081 1.00 0.00 C ATOM 640 CEN ALA 281 54.775 123.759 26.081 1.00 0.00 C ATOM 641 H ALA 281 54.566 122.093 27.989 1.00 0.00 H ATOM 642 N PHE 282 57.485 123.577 27.632 1.00 0.00 N ATOM 643 CA PHE 282 58.808 124.124 27.912 1.00 0.00 C ATOM 644 C PHE 282 59.882 123.051 27.795 1.00 0.00 C ATOM 645 O PHE 282 60.937 123.277 27.202 1.00 0.00 O ATOM 646 CB PHE 282 58.842 124.753 29.306 1.00 0.00 C ATOM 647 CEN PHE 282 58.724 126.197 29.961 1.00 0.00 C ATOM 648 H PHE 282 56.795 123.557 28.370 1.00 0.00 H ATOM 649 N GLN 283 59.609 121.881 28.364 1.00 0.00 N ATOM 650 CA GLN 283 60.538 120.760 28.297 1.00 0.00 C ATOM 651 C GLN 283 60.785 120.337 26.855 1.00 0.00 C ATOM 652 O GLN 283 61.913 120.018 26.476 1.00 0.00 O ATOM 653 CB GLN 283 60.003 119.572 29.100 1.00 0.00 C ATOM 654 CEN GLN 283 60.124 118.711 30.613 1.00 0.00 C ATOM 655 H GLN 283 58.734 121.767 28.857 1.00 0.00 H ATOM 656 N THR 284 59.726 120.336 26.054 1.00 0.00 N ATOM 657 CA THR 284 59.837 120.009 24.637 1.00 0.00 C ATOM 658 C THR 284 60.681 121.038 23.898 1.00 0.00 C ATOM 659 O THR 284 61.480 120.692 23.028 1.00 0.00 O ATOM 660 CB THR 284 58.454 119.918 23.967 1.00 0.00 C ATOM 661 CEN THR 284 57.919 119.685 23.920 1.00 0.00 C ATOM 662 H THR 284 58.820 120.569 26.435 1.00 0.00 H ATOM 663 N GLY 285 60.497 122.308 24.248 1.00 0.00 N ATOM 664 CA GLY 285 61.266 123.388 23.642 1.00 0.00 C ATOM 665 C GLY 285 62.710 123.374 24.122 1.00 0.00 C ATOM 666 O GLY 285 63.633 123.646 23.353 1.00 0.00 O ATOM 667 CEN GLY 285 61.266 123.389 23.641 1.00 0.00 C ATOM 668 H GLY 285 59.809 122.529 24.953 1.00 0.00 H ATOM 669 N ILE 286 62.902 123.057 25.398 1.00 0.00 N ATOM 670 CA ILE 286 64.238 122.974 25.976 1.00 0.00 C ATOM 671 C ILE 286 65.055 121.870 25.317 1.00 0.00 C ATOM 672 O ILE 286 66.236 122.053 25.018 1.00 0.00 O ATOM 673 CB ILE 286 64.183 122.723 27.493 1.00 0.00 C ATOM 674 CEN ILE 286 64.099 123.195 28.473 1.00 0.00 C ATOM 675 H ILE 286 62.100 122.867 25.983 1.00 0.00 H ATOM 676 N ARG 287 64.420 120.725 25.092 1.00 0.00 N ATOM 677 CA ARG 287 65.091 119.586 24.476 1.00 0.00 C ATOM 678 C ARG 287 65.513 119.902 23.047 1.00 0.00 C ATOM 679 O ARG 287 66.614 119.550 22.623 1.00 0.00 O ATOM 680 CB ARG 287 64.247 118.321 24.541 1.00 0.00 C ATOM 681 CEN ARG 287 63.352 116.143 25.318 1.00 0.00 C ATOM 682 H ARG 287 63.448 120.642 25.355 1.00 0.00 H ATOM 683 N SER 288 64.631 120.568 22.308 1.00 0.00 N ATOM 684 CA SER 288 64.927 120.970 20.939 1.00 0.00 C ATOM 685 C SER 288 66.136 121.897 20.887 1.00 0.00 C ATOM 686 O SER 288 66.995 121.763 20.015 1.00 0.00 O ATOM 687 CB SER 288 63.718 121.644 20.319 1.00 0.00 C ATOM 688 CEN SER 288 63.269 121.948 20.285 1.00 0.00 C ATOM 689 H SER 288 63.732 120.801 22.706 1.00 0.00 H ATOM 690 N ILE 289 66.197 122.836 21.824 1.00 0.00 N ATOM 691 CA ILE 289 67.326 123.751 21.919 1.00 0.00 C ATOM 692 C ILE 289 68.608 123.011 22.279 1.00 0.00 C ATOM 693 O ILE 289 69.684 123.330 21.774 1.00 0.00 O ATOM 694 CB ILE 289 67.073 124.856 22.962 1.00 0.00 C ATOM 695 CEN ILE 289 66.630 125.837 23.133 1.00 0.00 C ATOM 696 H ILE 289 65.440 122.917 22.488 1.00 0.00 H ATOM 697 N ALA 290 68.485 122.019 23.154 1.00 0.00 N ATOM 698 CA ALA 290 69.629 121.212 23.562 1.00 0.00 C ATOM 699 C ALA 290 70.123 120.340 22.415 1.00 0.00 C ATOM 700 O ALA 290 71.323 120.102 22.276 1.00 0.00 O ATOM 701 CB ALA 290 69.270 120.355 24.767 1.00 0.00 C ATOM 702 CEN ALA 290 69.270 120.355 24.766 1.00 0.00 C ATOM 703 H ALA 290 67.577 121.821 23.549 1.00 0.00 H ATOM 704 N TYR 291 69.193 119.866 21.594 1.00 0.00 N ATOM 705 CA TYR 291 69.539 119.085 20.413 1.00 0.00 C ATOM 706 C TYR 291 70.268 119.938 19.383 1.00 0.00 C ATOM 707 O TYR 291 71.217 119.483 18.745 1.00 0.00 O ATOM 708 CB TYR 291 68.282 118.471 19.790 1.00 0.00 C ATOM 709 CEN TYR 291 67.411 116.952 19.731 1.00 0.00 C ATOM 710 H TYR 291 68.221 120.051 21.794 1.00 0.00 H ATOM 711 N ALA 292 69.819 121.179 19.225 1.00 0.00 N ATOM 712 CA ALA 292 70.461 122.115 18.310 1.00 0.00 C ATOM 713 C ALA 292 71.822 122.554 18.837 1.00 0.00 C ATOM 714 O ALA 292 72.777 122.695 18.073 1.00 0.00 O ATOM 715 CB ALA 292 69.566 123.323 18.074 1.00 0.00 C ATOM 716 CEN ALA 292 69.567 123.323 18.074 1.00 0.00 C ATOM 717 H ALA 292 69.012 121.480 19.751 1.00 0.00 H ATOM 718 N VAL 293 71.903 122.767 20.145 1.00 0.00 N ATOM 719 CA VAL 293 73.136 123.230 20.771 1.00 0.00 C ATOM 720 C VAL 293 74.244 122.194 20.639 1.00 0.00 C ATOM 721 O VAL 293 75.376 122.522 20.286 1.00 0.00 O ATOM 722 CB VAL 293 72.926 123.556 22.262 1.00 0.00 C ATOM 723 CEN VAL 293 72.889 124.072 22.716 1.00 0.00 C ATOM 724 H VAL 293 71.090 122.604 20.722 1.00 0.00 H ATOM 725 N ALA 294 73.911 120.939 20.925 1.00 0.00 N ATOM 726 CA ALA 294 74.877 119.850 20.836 1.00 0.00 C ATOM 727 C ALA 294 75.423 119.714 19.421 1.00 0.00 C ATOM 728 O ALA 294 76.615 119.477 19.226 1.00 0.00 O ATOM 729 CB ALA 294 74.245 118.544 21.293 1.00 0.00 C ATOM 730 CEN ALA 294 74.246 118.545 21.292 1.00 0.00 C ATOM 731 H ALA 294 72.964 120.735 21.212 1.00 0.00 H ATOM 732 N ASN 295 74.544 119.864 18.436 1.00 0.00 N ATOM 733 CA ASN 295 74.920 119.678 17.039 1.00 0.00 C ATOM 734 C ASN 295 75.968 120.697 16.610 1.00 0.00 C ATOM 735 O ASN 295 76.860 120.387 16.280 1.00 0.00 O ATOM 736 CB ASN 295 73.711 119.752 16.124 1.00 0.00 C ATOM 737 CEN ASN 295 73.012 119.096 15.696 1.00 0.00 C ATOM 738 H ASN 295 73.592 120.115 18.660 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 138 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 55.83 81.0 21 7.3 286 ARMSMC SECONDARY STRUCTURE . . 42.83 89.5 19 11.4 166 ARMSMC SURFACE . . . . . . . . 69.16 76.9 13 7.6 170 ARMSMC BURIED . . . . . . . . 20.29 87.5 8 6.9 116 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 111 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 101 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 65 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 68 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 83 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 62 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 47 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 20 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.81 (Number of atoms: 28) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.81 28 19.4 144 CRMSCA CRN = ALL/NP . . . . . 0.3146 CRMSCA SECONDARY STRUCTURE . . 8.74 25 30.1 83 CRMSCA SURFACE . . . . . . . . 9.40 17 19.8 86 CRMSCA BURIED . . . . . . . . 7.81 11 19.0 58 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.81 138 19.5 706 CRMSMC SECONDARY STRUCTURE . . 8.68 123 30.0 410 CRMSMC SURFACE . . . . . . . . 9.42 85 20.0 425 CRMSMC BURIED . . . . . . . . 7.72 53 18.9 281 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.25 26 5.0 521 CRMSSC RELIABLE SIDE CHAINS . 9.25 26 5.9 441 CRMSSC SECONDARY STRUCTURE . . 9.31 23 7.3 313 CRMSSC SURFACE . . . . . . . . 9.93 17 5.3 322 CRMSSC BURIED . . . . . . . . 7.79 9 4.5 199 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.81 138 12.6 1097 CRMSALL SECONDARY STRUCTURE . . 8.68 123 19.1 645 CRMSALL SURFACE . . . . . . . . 9.42 85 12.8 666 CRMSALL BURIED . . . . . . . . 7.72 53 12.3 431 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.366 1.000 0.500 28 19.4 144 ERRCA SECONDARY STRUCTURE . . 8.249 1.000 0.500 25 30.1 83 ERRCA SURFACE . . . . . . . . 8.929 1.000 0.500 17 19.8 86 ERRCA BURIED . . . . . . . . 7.496 1.000 0.500 11 19.0 58 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.349 1.000 0.500 138 19.5 706 ERRMC SECONDARY STRUCTURE . . 8.192 1.000 0.500 123 30.0 410 ERRMC SURFACE . . . . . . . . 8.925 1.000 0.500 85 20.0 425 ERRMC BURIED . . . . . . . . 7.424 1.000 0.500 53 18.9 281 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.665 1.000 0.500 26 5.0 521 ERRSC RELIABLE SIDE CHAINS . 8.665 1.000 0.500 26 5.9 441 ERRSC SECONDARY STRUCTURE . . 8.657 1.000 0.500 23 7.3 313 ERRSC SURFACE . . . . . . . . 9.369 1.000 0.500 17 5.3 322 ERRSC BURIED . . . . . . . . 7.336 1.000 0.500 9 4.5 199 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.349 1.000 0.500 138 12.6 1097 ERRALL SECONDARY STRUCTURE . . 8.192 1.000 0.500 123 19.1 645 ERRALL SURFACE . . . . . . . . 8.925 1.000 0.500 85 12.8 666 ERRALL BURIED . . . . . . . . 7.424 1.000 0.500 53 12.3 431 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 19 28 144 DISTCA CA (P) 0.00 0.00 0.00 1.39 13.19 144 DISTCA CA (RMS) 0.00 0.00 0.00 3.56 7.09 DISTCA ALL (N) 0 1 1 14 96 138 1097 DISTALL ALL (P) 0.00 0.09 0.09 1.28 8.75 1097 DISTALL ALL (RMS) 0.00 1.94 1.94 3.91 7.09 DISTALL END of the results output