####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 28 ( 194), selected 28 , name T0628TS042_1_3-D1 # Molecule2: number of CA atoms 144 ( 1097), selected 28 , name T0628-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0628TS042_1_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 132 - 295 4.92 14.04 LCS_AVERAGE: 10.76 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 279 - 295 1.69 17.69 LCS_AVERAGE: 10.17 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 281 - 295 0.98 17.71 LCS_AVERAGE: 8.83 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 28 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 122 E 122 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 LCS_GDT E 123 E 123 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 LCS_GDT T 124 T 124 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 LCS_GDT Q 125 Q 125 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 LCS_GDT L 126 L 126 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 LCS_GDT L 127 L 127 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 LCS_GDT G 128 G 128 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 LCS_GDT A 129 A 129 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 17 LCS_GDT R 130 R 130 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 15 18 18 20 LCS_GDT A 131 A 131 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 15 17 19 19 20 LCS_GDT L 132 L 132 11 11 18 11 11 11 11 11 11 11 11 11 11 11 11 11 13 15 16 18 19 19 20 LCS_GDT D 279 D 279 5 17 18 4 4 8 10 13 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT T 280 T 280 5 17 18 4 4 8 10 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT A 281 A 281 15 17 18 6 9 13 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT F 282 F 282 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT Q 283 Q 283 15 17 18 5 10 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT T 284 T 284 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT G 285 G 285 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT I 286 I 286 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT R 287 R 287 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT S 288 S 288 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT I 289 I 289 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT A 290 A 290 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT Y 291 Y 291 15 17 18 6 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT A 292 A 292 15 17 18 5 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT V 293 V 293 15 17 18 5 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT A 294 A 294 15 17 18 5 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_GDT N 295 N 295 15 17 18 5 10 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 LCS_AVERAGE LCS_A: 9.92 ( 8.83 10.17 10.76 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 12 14 15 16 16 17 17 17 17 17 17 17 17 17 17 18 19 19 20 GDT PERCENT_AT 7.64 8.33 9.72 10.42 11.11 11.11 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 11.81 12.50 13.19 13.19 13.89 GDT RMS_LOCAL 0.32 0.78 0.89 0.98 1.41 1.41 1.69 1.69 1.69 1.69 1.69 1.69 1.69 1.69 1.69 1.69 4.92 5.41 5.41 5.93 GDT RMS_ALL_AT 23.29 17.98 17.88 17.71 17.34 17.34 17.69 17.69 17.69 17.69 17.69 17.69 17.69 17.69 17.69 17.69 14.04 14.44 14.44 13.78 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 122 E 122 26.790 4 0.669 0.615 27.732 0.000 0.000 LGA E 123 E 123 28.227 4 0.066 0.086 28.920 0.000 0.000 LGA T 124 T 124 25.770 2 0.022 0.035 26.399 0.000 0.000 LGA Q 125 Q 125 26.562 4 0.023 0.032 27.693 0.000 0.000 LGA L 126 L 126 29.175 3 0.025 0.025 30.018 0.000 0.000 LGA L 127 L 127 28.294 3 0.020 0.020 28.346 0.000 0.000 LGA G 128 G 128 26.574 0 0.016 0.016 27.436 0.000 0.000 LGA A 129 A 129 29.302 0 0.051 0.062 30.552 0.000 0.000 LGA R 130 R 130 31.024 6 0.042 0.040 31.436 0.000 0.000 LGA A 131 A 131 28.833 0 0.078 0.078 29.355 0.000 0.000 LGA L 132 L 132 28.547 3 0.665 0.618 32.549 0.000 0.000 LGA D 279 D 279 3.493 3 0.084 0.086 4.623 53.810 30.833 LGA T 280 T 280 3.025 2 0.177 0.184 3.691 59.405 40.136 LGA A 281 A 281 0.834 0 0.224 0.229 2.050 85.952 81.714 LGA F 282 F 282 1.538 6 0.057 0.056 2.162 72.976 33.939 LGA Q 283 Q 283 1.920 4 0.044 0.052 2.174 72.857 39.577 LGA T 284 T 284 1.076 2 0.028 0.036 1.345 81.429 58.163 LGA G 285 G 285 1.238 0 0.094 0.094 1.451 81.429 81.429 LGA I 286 I 286 1.763 3 0.032 0.054 1.967 72.857 45.536 LGA R 287 R 287 1.408 6 0.000 0.014 1.671 81.429 36.234 LGA S 288 S 288 1.198 1 0.051 0.054 1.360 81.429 67.857 LGA I 289 I 289 0.970 3 0.031 0.045 1.259 88.214 54.286 LGA A 290 A 290 0.822 0 0.022 0.031 1.125 88.214 88.667 LGA Y 291 Y 291 1.013 7 0.070 0.065 1.225 88.214 36.190 LGA A 292 A 292 0.989 0 0.066 0.074 1.341 88.214 86.857 LGA V 293 V 293 1.488 2 0.027 0.037 2.474 77.381 54.626 LGA A 294 A 294 1.834 0 0.160 0.164 2.582 68.929 69.714 LGA N 295 N 295 1.344 4 0.527 0.538 4.110 62.500 35.873 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 28 112 112 100.00 210 138 65.71 144 SUMMARY(RMSD_GDC): 10.795 10.540 10.725 9.064 6.539 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 28 144 4.0 17 1.69 10.590 10.808 0.952 LGA_LOCAL RMSD: 1.686 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.686 Number of assigned atoms: 28 Std_ASGN_ATOMS RMSD: 10.795 Standard rmsd on all 28 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.722513 * X + 0.504260 * Y + 0.472966 * Z + 68.781921 Y_new = -0.346221 * X + -0.856054 * Y + 0.383800 * Z + 151.671341 Z_new = 0.598419 * X + 0.113549 * Y + 0.793096 * Z + 41.571339 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.694731 -0.641527 0.142206 [DEG: -154.3967 -36.7568 8.1478 ] ZXZ: 2.252494 0.654922 1.383277 [DEG: 129.0584 37.5242 79.2559 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0628TS042_1_3-D1 REMARK 2: T0628-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0628TS042_1_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 28 144 4.0 17 1.69 10.808 10.80 REMARK ---------------------------------------------------------- MOLECULE T0628TS042_1_3-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 3 REMARK PFRMAT TS REMARK TARGET T0628 REMARK PARENT N/A ATOM 1 N GLU 122 68.782 151.671 41.571 1.00 0.00 N ATOM 2 CA GLU 122 67.728 151.167 42.444 1.00 0.00 C ATOM 3 C GLU 122 68.046 149.760 42.935 1.00 0.00 C ATOM 4 O GLU 122 68.655 148.965 42.218 1.00 0.00 O ATOM 5 CB GLU 122 66.381 151.178 41.719 1.00 0.00 C ATOM 6 CEN GLU 122 64.878 151.919 41.406 1.00 0.00 C ATOM 7 H GLU 122 68.570 151.927 40.628 1.00 0.00 H ATOM 8 N GLU 123 67.632 149.459 44.160 1.00 0.00 N ATOM 9 CA GLU 123 67.884 148.151 44.755 1.00 0.00 C ATOM 10 C GLU 123 67.139 147.053 44.007 1.00 0.00 C ATOM 11 O GLU 123 67.694 145.988 43.736 1.00 0.00 O ATOM 12 CB GLU 123 67.482 148.147 46.231 1.00 0.00 C ATOM 13 CEN GLU 123 67.905 148.261 47.878 1.00 0.00 C ATOM 14 H GLU 123 67.129 150.153 44.694 1.00 0.00 H ATOM 15 N THR 124 65.881 147.319 43.675 1.00 0.00 N ATOM 16 CA THR 124 65.101 146.413 42.840 1.00 0.00 C ATOM 17 C THR 124 65.719 146.272 41.454 1.00 0.00 C ATOM 18 O THR 124 65.766 145.177 40.894 1.00 0.00 O ATOM 19 CB THR 124 63.644 146.891 42.694 1.00 0.00 C ATOM 20 CEN THR 124 63.126 147.035 42.922 1.00 0.00 C ATOM 21 H THR 124 65.453 148.171 44.010 1.00 0.00 H ATOM 22 N GLN 125 66.192 147.386 40.906 1.00 0.00 N ATOM 23 CA GLN 125 66.838 147.384 39.599 1.00 0.00 C ATOM 24 C GLN 125 68.094 146.522 39.607 1.00 0.00 C ATOM 25 O GLN 125 68.379 145.813 38.642 1.00 0.00 O ATOM 26 CB GLN 125 67.192 148.811 39.173 1.00 0.00 C ATOM 27 CEN GLN 125 66.699 150.159 38.180 1.00 0.00 C ATOM 28 H GLN 125 66.102 148.258 41.409 1.00 0.00 H ATOM 29 N LEU 126 68.843 146.588 40.703 1.00 0.00 N ATOM 30 CA LEU 126 70.076 145.820 40.836 1.00 0.00 C ATOM 31 C LEU 126 69.794 144.323 40.832 1.00 0.00 C ATOM 32 O LEU 126 70.491 143.553 40.170 1.00 0.00 O ATOM 33 CB LEU 126 70.814 146.221 42.120 1.00 0.00 C ATOM 34 CEN LEU 126 72.059 147.088 42.382 1.00 0.00 C ATOM 35 H LEU 126 68.551 147.185 41.463 1.00 0.00 H ATOM 36 N LEU 127 68.770 143.916 41.573 1.00 0.00 N ATOM 37 CA LEU 127 68.374 142.514 41.629 1.00 0.00 C ATOM 38 C LEU 127 67.928 142.012 40.261 1.00 0.00 C ATOM 39 O LEU 127 68.229 140.882 39.876 1.00 0.00 O ATOM 40 CB LEU 127 67.254 142.320 42.659 1.00 0.00 C ATOM 41 CEN LEU 127 67.235 141.738 44.085 1.00 0.00 C ATOM 42 H LEU 127 68.252 144.595 42.112 1.00 0.00 H ATOM 43 N GLY 128 67.211 142.859 39.530 1.00 0.00 N ATOM 44 CA GLY 128 66.796 142.537 38.171 1.00 0.00 C ATOM 45 C GLY 128 67.997 142.222 37.288 1.00 0.00 C ATOM 46 O GLY 128 67.991 141.244 36.540 1.00 0.00 O ATOM 47 CEN GLY 128 66.795 142.536 38.170 1.00 0.00 C ATOM 48 H GLY 128 66.946 143.748 39.929 1.00 0.00 H ATOM 49 N ALA 129 69.026 143.058 37.379 1.00 0.00 N ATOM 50 CA ALA 129 70.243 142.862 36.601 1.00 0.00 C ATOM 51 C ALA 129 70.916 141.541 36.953 1.00 0.00 C ATOM 52 O ALA 129 71.379 140.815 36.073 1.00 0.00 O ATOM 53 CB ALA 129 71.203 144.022 36.817 1.00 0.00 C ATOM 54 CEN ALA 129 71.203 144.021 36.817 1.00 0.00 C ATOM 55 H ALA 129 68.964 143.849 38.004 1.00 0.00 H ATOM 56 N ARG 130 70.966 141.234 38.245 1.00 0.00 N ATOM 57 CA ARG 130 71.588 140.002 38.716 1.00 0.00 C ATOM 58 C ARG 130 70.889 138.777 38.139 1.00 0.00 C ATOM 59 O ARG 130 71.532 137.776 37.822 1.00 0.00 O ATOM 60 CB ARG 130 71.659 139.940 40.235 1.00 0.00 C ATOM 61 CEN ARG 130 72.536 140.129 42.546 1.00 0.00 C ATOM 62 H ARG 130 70.563 141.870 38.917 1.00 0.00 H ATOM 63 N ALA 131 69.570 138.862 38.008 1.00 0.00 N ATOM 64 CA ALA 131 68.790 137.792 37.398 1.00 0.00 C ATOM 65 C ALA 131 68.977 137.766 35.886 1.00 0.00 C ATOM 66 O ALA 131 69.315 136.732 35.309 1.00 0.00 O ATOM 67 CB ALA 131 67.318 137.941 37.750 1.00 0.00 C ATOM 68 CEN ALA 131 67.319 137.940 37.750 1.00 0.00 C ATOM 69 H ALA 131 69.094 139.690 38.337 1.00 0.00 H ATOM 70 N LEU 132 68.755 138.911 35.249 1.00 0.00 N ATOM 71 CA LEU 132 68.741 138.987 33.792 1.00 0.00 C ATOM 72 C LEU 132 70.062 139.524 33.257 1.00 0.00 C ATOM 73 O LEU 132 70.740 140.307 33.922 1.00 0.00 O ATOM 74 CB LEU 132 67.576 139.864 33.318 1.00 0.00 C ATOM 75 CEN LEU 132 66.207 139.535 32.692 1.00 0.00 C ATOM 76 H LEU 132 68.590 139.750 35.786 1.00 0.00 H ATOM 621 N ASP 279 54.417 125.861 28.968 1.00 0.00 N ATOM 622 CA ASP 279 54.948 125.065 30.068 1.00 0.00 C ATOM 623 C ASP 279 54.822 123.575 29.779 1.00 0.00 C ATOM 624 O ASP 279 55.619 122.770 30.262 1.00 0.00 O ATOM 625 CB ASP 279 54.231 125.410 31.375 1.00 0.00 C ATOM 626 CEN ASP 279 54.349 125.986 32.207 1.00 0.00 C ATOM 627 H ASP 279 53.586 126.415 29.119 1.00 0.00 H ATOM 628 N THR 280 53.818 123.212 28.989 1.00 0.00 N ATOM 629 CA THR 280 53.631 121.827 28.574 1.00 0.00 C ATOM 630 C THR 280 54.699 121.402 27.577 1.00 0.00 C ATOM 631 O THR 280 54.845 120.217 27.274 1.00 0.00 O ATOM 632 CB THR 280 52.241 121.608 27.947 1.00 0.00 C ATOM 633 CEN THR 280 51.658 121.618 27.975 1.00 0.00 C ATOM 634 H THR 280 53.167 123.915 28.668 1.00 0.00 H ATOM 635 N ALA 281 55.448 122.374 27.067 1.00 0.00 N ATOM 636 CA ALA 281 56.438 122.116 26.028 1.00 0.00 C ATOM 637 C ALA 281 57.854 122.182 26.588 1.00 0.00 C ATOM 638 O ALA 281 58.829 122.039 25.851 1.00 0.00 O ATOM 639 CB ALA 281 56.271 123.102 24.881 1.00 0.00 C ATOM 640 CEN ALA 281 56.272 123.102 24.882 1.00 0.00 C ATOM 641 H ALA 281 55.328 123.317 27.408 1.00 0.00 H ATOM 642 N PHE 282 57.958 122.400 27.894 1.00 0.00 N ATOM 643 CA PHE 282 59.250 122.612 28.534 1.00 0.00 C ATOM 644 C PHE 282 60.126 121.369 28.434 1.00 0.00 C ATOM 645 O PHE 282 61.332 121.464 28.211 1.00 0.00 O ATOM 646 CB PHE 282 59.063 123.007 30.000 1.00 0.00 C ATOM 647 CEN PHE 282 59.042 124.329 30.881 1.00 0.00 C ATOM 648 H PHE 282 57.121 122.419 28.458 1.00 0.00 H ATOM 649 N GLN 283 59.510 120.203 28.600 1.00 0.00 N ATOM 650 CA GLN 283 60.221 118.937 28.479 1.00 0.00 C ATOM 651 C GLN 283 60.820 118.773 27.087 1.00 0.00 C ATOM 652 O GLN 283 62.000 118.452 26.944 1.00 0.00 O ATOM 653 CB GLN 283 59.283 117.764 28.779 1.00 0.00 C ATOM 654 CEN GLN 283 58.801 116.606 29.992 1.00 0.00 C ATOM 655 H GLN 283 58.523 120.195 28.817 1.00 0.00 H ATOM 656 N THR 284 60.001 118.996 26.066 1.00 0.00 N ATOM 657 CA THR 284 60.445 118.861 24.684 1.00 0.00 C ATOM 658 C THR 284 61.339 120.026 24.277 1.00 0.00 C ATOM 659 O THR 284 62.396 119.829 23.677 1.00 0.00 O ATOM 660 CB THR 284 59.253 118.779 23.712 1.00 0.00 C ATOM 661 CEN THR 284 58.764 118.523 23.520 1.00 0.00 C ATOM 662 H THR 284 59.045 119.265 26.251 1.00 0.00 H ATOM 663 N GLY 285 60.908 121.239 24.606 1.00 0.00 N ATOM 664 CA GLY 285 61.609 122.443 24.177 1.00 0.00 C ATOM 665 C GLY 285 62.962 122.568 24.865 1.00 0.00 C ATOM 666 O GLY 285 63.908 123.119 24.302 1.00 0.00 O ATOM 667 CEN GLY 285 61.610 122.444 24.177 1.00 0.00 C ATOM 668 H GLY 285 60.074 121.329 25.168 1.00 0.00 H ATOM 669 N ILE 286 63.048 122.054 26.088 1.00 0.00 N ATOM 670 CA ILE 286 64.298 122.068 26.839 1.00 0.00 C ATOM 671 C ILE 286 65.359 121.212 26.159 1.00 0.00 C ATOM 672 O ILE 286 66.495 121.647 25.971 1.00 0.00 O ATOM 673 CB ILE 286 64.096 121.569 28.281 1.00 0.00 C ATOM 674 CEN ILE 286 63.816 121.859 29.294 1.00 0.00 C ATOM 675 H ILE 286 62.227 121.642 26.507 1.00 0.00 H ATOM 676 N ARG 287 64.982 119.992 25.792 1.00 0.00 N ATOM 677 CA ARG 287 65.889 119.085 25.098 1.00 0.00 C ATOM 678 C ARG 287 66.209 119.591 23.698 1.00 0.00 C ATOM 679 O ARG 287 67.340 119.475 23.228 1.00 0.00 O ATOM 680 CB ARG 287 65.362 117.658 25.068 1.00 0.00 C ATOM 681 CEN ARG 287 65.005 115.281 25.681 1.00 0.00 C ATOM 682 H ARG 287 64.042 119.684 26.000 1.00 0.00 H ATOM 683 N SER 288 65.204 120.155 23.034 1.00 0.00 N ATOM 684 CA SER 288 65.375 120.677 21.683 1.00 0.00 C ATOM 685 C SER 288 66.370 121.830 21.661 1.00 0.00 C ATOM 686 O SER 288 67.261 121.877 20.813 1.00 0.00 O ATOM 687 CB SER 288 64.039 121.121 21.122 1.00 0.00 C ATOM 688 CEN SER 288 63.536 121.328 21.111 1.00 0.00 C ATOM 689 H SER 288 64.299 120.222 23.476 1.00 0.00 H ATOM 690 N ILE 289 66.213 122.759 22.599 1.00 0.00 N ATOM 691 CA ILE 289 67.081 123.928 22.671 1.00 0.00 C ATOM 692 C ILE 289 68.532 123.524 22.894 1.00 0.00 C ATOM 693 O ILE 289 69.437 124.038 22.237 1.00 0.00 O ATOM 694 CB ILE 289 66.645 124.885 23.797 1.00 0.00 C ATOM 695 CEN ILE 289 65.986 125.712 24.059 1.00 0.00 C ATOM 696 H ILE 289 65.472 122.652 23.277 1.00 0.00 H ATOM 697 N ALA 290 68.747 122.600 23.824 1.00 0.00 N ATOM 698 CA ALA 290 70.089 122.118 24.130 1.00 0.00 C ATOM 699 C ALA 290 70.699 121.393 22.936 1.00 0.00 C ATOM 700 O ALA 290 71.860 121.614 22.590 1.00 0.00 O ATOM 701 CB ALA 290 70.061 121.207 25.348 1.00 0.00 C ATOM 702 CEN ALA 290 70.062 121.207 25.347 1.00 0.00 C ATOM 703 H ALA 290 67.962 122.222 24.333 1.00 0.00 H ATOM 704 N TYR 291 69.909 120.528 22.309 1.00 0.00 N ATOM 705 CA TYR 291 70.376 119.755 21.165 1.00 0.00 C ATOM 706 C TYR 291 70.619 120.650 19.956 1.00 0.00 C ATOM 707 O TYR 291 71.370 120.293 19.048 1.00 0.00 O ATOM 708 CB TYR 291 69.368 118.660 20.812 1.00 0.00 C ATOM 709 CEN TYR 291 69.110 116.941 21.035 1.00 0.00 C ATOM 710 H TYR 291 68.961 120.403 22.633 1.00 0.00 H ATOM 711 N ALA 292 69.980 121.815 19.951 1.00 0.00 N ATOM 712 CA ALA 292 70.122 122.762 18.852 1.00 0.00 C ATOM 713 C ALA 292 71.589 123.025 18.538 1.00 0.00 C ATOM 714 O ALA 292 72.026 122.877 17.396 1.00 0.00 O ATOM 715 CB ALA 292 69.404 124.063 19.178 1.00 0.00 C ATOM 716 CEN ALA 292 69.405 124.063 19.177 1.00 0.00 C ATOM 717 H ALA 292 69.381 122.050 20.729 1.00 0.00 H ATOM 718 N VAL 293 72.347 123.416 19.557 1.00 0.00 N ATOM 719 CA VAL 293 73.731 123.835 19.367 1.00 0.00 C ATOM 720 C VAL 293 74.601 122.670 18.918 1.00 0.00 C ATOM 721 O VAL 293 75.423 122.810 18.011 1.00 0.00 O ATOM 722 CB VAL 293 74.321 124.436 20.657 1.00 0.00 C ATOM 723 CEN VAL 293 74.528 125.024 20.950 1.00 0.00 C ATOM 724 H VAL 293 71.953 123.423 20.488 1.00 0.00 H ATOM 725 N ALA 294 74.418 121.518 19.556 1.00 0.00 N ATOM 726 CA ALA 294 75.213 120.336 19.247 1.00 0.00 C ATOM 727 C ALA 294 74.992 119.884 17.810 1.00 0.00 C ATOM 728 O ALA 294 75.939 119.521 17.110 1.00 0.00 O ATOM 729 CB ALA 294 74.886 119.210 20.217 1.00 0.00 C ATOM 730 CEN ALA 294 74.886 119.210 20.216 1.00 0.00 C ATOM 731 H ALA 294 73.710 121.461 20.274 1.00 0.00 H ATOM 732 N ASN 295 73.738 119.907 17.373 1.00 0.00 N ATOM 733 CA ASN 295 73.327 119.173 16.182 1.00 0.00 C ATOM 734 C ASN 295 72.771 120.114 15.121 1.00 0.00 C ATOM 735 O ASN 295 73.207 120.167 14.222 1.00 0.00 O ATOM 736 CB ASN 295 72.309 118.099 16.516 1.00 0.00 C ATOM 737 CEN ASN 295 72.300 117.079 16.762 1.00 0.00 C ATOM 738 H ASN 295 73.051 120.447 17.879 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 138 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 43.69 90.5 21 7.3 286 ARMSMC SECONDARY STRUCTURE . . 38.97 94.7 19 11.4 166 ARMSMC SURFACE . . . . . . . . 55.20 84.6 13 7.6 170 ARMSMC BURIED . . . . . . . . 7.63 100.0 8 6.9 116 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 111 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 101 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 65 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 68 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 83 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 62 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 47 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 20 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.80 (Number of atoms: 28) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.80 28 19.4 144 CRMSCA CRN = ALL/NP . . . . . 0.3855 CRMSCA SECONDARY STRUCTURE . . 11.07 25 30.1 83 CRMSCA SURFACE . . . . . . . . 10.65 17 19.8 86 CRMSCA BURIED . . . . . . . . 11.02 11 19.0 58 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.73 138 19.5 706 CRMSMC SECONDARY STRUCTURE . . 10.96 123 30.0 410 CRMSMC SURFACE . . . . . . . . 10.63 85 20.0 425 CRMSMC BURIED . . . . . . . . 10.89 53 18.9 281 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.41 26 5.0 521 CRMSSC RELIABLE SIDE CHAINS . 11.41 26 5.9 441 CRMSSC SECONDARY STRUCTURE . . 11.78 23 7.3 313 CRMSSC SURFACE . . . . . . . . 11.24 17 5.3 322 CRMSSC BURIED . . . . . . . . 11.72 9 4.5 199 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.73 138 12.6 1097 CRMSALL SECONDARY STRUCTURE . . 10.96 123 19.1 645 CRMSALL SURFACE . . . . . . . . 10.63 85 12.8 666 CRMSALL BURIED . . . . . . . . 10.89 53 12.3 431 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.106 1.000 0.500 28 19.4 144 ERRCA SECONDARY STRUCTURE . . 10.371 1.000 0.500 25 30.1 83 ERRCA SURFACE . . . . . . . . 10.002 1.000 0.500 17 19.8 86 ERRCA BURIED . . . . . . . . 10.266 1.000 0.500 11 19.0 58 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.035 1.000 0.500 138 19.5 706 ERRMC SECONDARY STRUCTURE . . 10.251 1.000 0.500 123 30.0 410 ERRMC SURFACE . . . . . . . . 10.010 1.000 0.500 85 20.0 425 ERRMC BURIED . . . . . . . . 10.075 1.000 0.500 53 18.9 281 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.634 1.000 0.500 26 5.0 521 ERRSC RELIABLE SIDE CHAINS . 10.634 1.000 0.500 26 5.9 441 ERRSC SECONDARY STRUCTURE . . 10.994 1.000 0.500 23 7.3 313 ERRSC SURFACE . . . . . . . . 10.687 1.000 0.500 17 5.3 322 ERRSC BURIED . . . . . . . . 10.536 1.000 0.500 9 4.5 199 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.035 1.000 0.500 138 12.6 1097 ERRALL SECONDARY STRUCTURE . . 10.251 1.000 0.500 123 19.1 645 ERRALL SURFACE . . . . . . . . 10.010 1.000 0.500 85 12.8 666 ERRALL BURIED . . . . . . . . 10.075 1.000 0.500 53 12.3 431 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 13 28 144 DISTCA CA (P) 0.00 0.00 0.00 1.39 9.03 144 DISTCA CA (RMS) 0.00 0.00 0.00 3.49 7.17 DISTCA ALL (N) 0 0 2 12 68 138 1097 DISTALL ALL (P) 0.00 0.00 0.18 1.09 6.20 1097 DISTALL ALL (RMS) 0.00 0.00 2.87 3.89 7.24 DISTALL END of the results output