####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 34 ( 284), selected 34 , name T0624TS433_1-D1 # Molecule2: number of CA atoms 69 ( 570), selected 34 , name T0624-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0624TS433_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 28 - 51 4.78 9.08 LCS_AVERAGE: 33.21 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 42 - 51 1.83 9.34 LCS_AVERAGE: 12.53 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 45 - 51 0.85 12.78 LCS_AVERAGE: 7.59 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 34 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Y 18 Y 18 6 7 20 3 5 5 6 7 8 8 9 14 16 18 18 18 18 21 23 24 26 28 28 LCS_GDT D 19 D 19 6 7 20 3 5 5 6 7 8 8 11 14 16 18 18 18 19 20 23 24 27 28 28 LCS_GDT I 20 I 20 6 7 20 3 5 5 6 7 8 11 14 16 16 18 18 18 19 20 22 23 27 28 28 LCS_GDT R 21 R 21 6 7 20 3 5 5 6 7 8 11 14 16 16 18 18 18 19 20 22 23 25 25 27 LCS_GDT F 22 F 22 6 7 20 3 5 5 6 7 8 12 14 16 16 18 18 18 19 20 22 23 25 26 28 LCS_GDT D 23 D 23 6 7 20 3 4 5 6 7 8 12 14 16 16 18 18 18 19 20 22 23 25 25 27 LCS_GDT L 24 L 24 3 8 20 3 3 5 7 7 9 11 14 16 16 18 18 18 19 20 22 23 24 25 27 LCS_GDT E 25 E 25 4 8 20 3 4 5 7 7 9 12 14 16 16 18 18 18 19 20 22 23 25 25 27 LCS_GDT S 26 S 26 4 8 20 3 4 5 7 7 9 12 14 16 16 18 18 18 19 21 22 24 27 28 28 LCS_GDT F 27 F 27 4 8 23 3 4 4 5 7 9 12 13 16 16 18 18 21 22 23 24 25 27 28 28 LCS_GDT Y 28 Y 28 4 8 24 3 4 5 7 7 9 12 14 16 16 18 20 22 23 23 24 25 27 28 28 LCS_GDT G 29 G 29 5 8 24 3 5 6 7 7 9 12 14 16 16 18 18 18 20 23 24 25 27 28 28 LCS_GDT G 30 G 30 5 8 24 3 5 6 7 7 9 12 14 16 16 19 20 22 23 23 24 25 27 28 28 LCS_GDT L 31 L 31 5 8 24 3 5 6 7 8 9 12 14 16 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT H 32 H 32 5 7 24 3 5 6 7 7 9 12 14 16 16 19 20 22 23 23 24 25 27 28 28 LCS_GDT C 33 C 33 5 9 24 3 5 6 8 9 11 11 14 16 16 18 20 22 23 23 24 25 27 28 28 LCS_GDT G 34 G 34 5 9 24 3 4 6 8 8 11 12 14 16 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT E 35 E 35 5 9 24 3 5 6 8 9 11 12 14 16 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT C 36 C 36 5 9 24 3 5 6 8 9 11 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT F 37 F 37 5 9 24 3 4 5 8 9 11 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT D 38 D 38 5 9 24 3 5 6 8 8 11 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT V 39 V 39 4 9 24 3 5 6 8 9 11 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT K 40 K 40 4 9 24 3 5 6 8 9 11 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT V 41 V 41 4 9 24 3 4 5 7 9 11 11 13 15 17 18 20 21 23 23 24 25 26 27 28 LCS_GDT K 42 K 42 4 10 24 3 4 5 7 9 11 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT D 43 D 43 4 10 24 3 4 7 8 9 11 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT V 44 V 44 4 10 24 3 5 7 8 9 10 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT W 45 W 45 7 10 24 3 5 7 8 9 10 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT V 46 V 46 7 10 24 3 5 7 8 9 10 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT P 47 P 47 7 10 24 3 5 7 8 9 10 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT V 48 V 48 7 10 24 3 5 7 8 9 10 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT R 49 R 49 7 10 24 3 5 7 8 9 10 11 13 15 17 19 20 22 23 23 24 25 27 28 28 LCS_GDT I 50 I 50 7 10 24 3 5 7 8 9 10 11 13 15 16 18 20 22 23 23 24 25 27 28 28 LCS_GDT E 51 E 51 7 10 24 3 5 7 8 9 10 11 13 15 16 19 20 22 23 23 24 25 27 28 28 LCS_AVERAGE LCS_A: 17.77 ( 7.59 12.53 33.21 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 7 8 9 11 12 14 16 17 19 20 22 23 23 24 25 27 28 28 GDT PERCENT_AT 4.35 7.25 10.14 11.59 13.04 15.94 17.39 20.29 23.19 24.64 27.54 28.99 31.88 33.33 33.33 34.78 36.23 39.13 40.58 40.58 GDT RMS_LOCAL 0.00 0.53 0.85 1.21 1.40 2.10 2.69 2.97 3.24 3.55 3.85 3.99 4.37 4.49 4.49 4.78 5.06 5.97 6.17 6.00 GDT RMS_ALL_AT 13.50 12.97 12.78 9.92 9.76 12.05 11.24 12.18 12.00 9.78 9.38 9.35 9.11 9.24 9.24 9.08 8.82 8.25 8.25 8.62 # Checking swapping # possible swapping detected: D 19 D 19 # possible swapping detected: D 23 D 23 # possible swapping detected: Y 28 Y 28 # possible swapping detected: F 37 F 37 # possible swapping detected: D 38 D 38 # possible swapping detected: D 43 D 43 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Y 18 Y 18 8.793 0 0.127 0.843 15.003 6.548 2.500 LGA D 19 D 19 6.365 0 0.102 0.398 8.454 17.500 13.631 LGA I 20 I 20 3.606 0 0.021 0.186 4.510 42.024 50.595 LGA R 21 R 21 3.341 0 0.083 1.013 10.531 55.476 26.147 LGA F 22 F 22 2.349 0 0.633 0.979 6.342 52.619 45.714 LGA D 23 D 23 2.246 0 0.284 1.167 6.423 67.500 44.643 LGA L 24 L 24 3.752 0 0.191 0.221 9.999 47.738 27.560 LGA E 25 E 25 3.310 0 0.392 1.013 7.382 59.405 35.873 LGA S 26 S 26 3.259 0 0.093 0.515 7.200 39.405 31.508 LGA F 27 F 27 4.700 0 0.578 0.896 12.580 40.476 17.965 LGA Y 28 Y 28 3.577 0 0.628 0.770 6.115 48.690 38.770 LGA G 29 G 29 2.174 0 0.525 0.525 2.174 70.833 70.833 LGA G 30 G 30 0.886 0 0.203 0.203 1.768 83.810 83.810 LGA L 31 L 31 1.884 0 0.127 0.942 7.557 63.452 41.548 LGA H 32 H 32 4.145 0 0.519 1.433 9.287 39.881 24.524 LGA C 33 C 33 5.619 0 0.590 0.600 10.843 42.619 29.206 LGA G 34 G 34 2.215 0 0.057 0.057 4.101 52.262 52.262 LGA E 35 E 35 3.000 0 0.142 1.191 4.410 49.048 47.460 LGA C 36 C 36 7.893 0 0.062 0.777 11.536 12.262 8.175 LGA F 37 F 37 9.083 0 0.159 0.910 13.106 1.071 2.251 LGA D 38 D 38 14.130 0 0.146 0.929 19.250 0.000 0.000 LGA V 39 V 39 15.938 0 0.157 1.142 20.377 0.000 0.000 LGA K 40 K 40 19.699 0 0.225 0.909 24.015 0.000 0.000 LGA V 41 V 41 24.614 0 0.091 1.080 29.269 0.000 0.000 LGA K 42 K 42 25.828 0 0.162 0.722 33.747 0.000 0.000 LGA D 43 D 43 24.314 0 0.564 1.019 27.325 0.000 0.000 LGA V 44 V 44 22.816 0 0.143 1.020 26.033 0.000 0.000 LGA W 45 W 45 18.016 0 0.075 1.084 19.778 0.000 0.000 LGA V 46 V 46 17.120 0 0.093 0.964 19.527 0.000 0.000 LGA P 47 P 47 15.152 0 0.163 0.186 17.484 0.000 0.000 LGA V 48 V 48 13.565 0 0.093 1.046 13.923 0.000 0.000 LGA R 49 R 49 11.507 0 0.068 1.433 16.263 0.000 0.000 LGA I 50 I 50 9.823 0 0.018 1.136 11.934 0.357 1.190 LGA E 51 E 51 10.998 0 0.164 1.150 15.199 0.119 0.053 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 34 136 136 100.00 284 284 100.00 69 SUMMARY(RMSD_GDC): 7.846 7.819 8.892 12.943 10.090 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 34 69 4.0 14 2.97 18.478 17.670 0.456 LGA_LOCAL RMSD: 2.968 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.184 Number of assigned atoms: 34 Std_ASGN_ATOMS RMSD: 7.846 Standard rmsd on all 34 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.335763 * X + 0.920772 * Y + -0.198601 * Z + 13.492522 Y_new = 0.675367 * X + 0.088354 * Y + -0.732170 * Z + 21.369518 Z_new = -0.656615 * X + -0.379964 * Y + -0.651525 * Z + 51.585037 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.032167 0.716321 -2.613623 [DEG: 116.4346 41.0422 -149.7496 ] ZXZ: -0.264876 2.280389 -2.095386 [DEG: -15.1763 130.6566 -120.0568 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0624TS433_1-D1 REMARK 2: T0624-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0624TS433_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 34 69 4.0 14 2.97 17.670 7.85 REMARK ---------------------------------------------------------- MOLECULE T0624TS433_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0624 REMARK MODEL 1 REMARK PARENT N/A ATOM 142 N TYR 18 25.058 30.642 13.004 1.00 99.99 N ATOM 143 CA TYR 18 26.084 29.751 12.437 1.00 99.99 C ATOM 144 C TYR 18 25.456 28.924 11.326 1.00 99.99 C ATOM 145 O TYR 18 24.421 28.339 11.638 1.00 99.99 O ATOM 146 CB TYR 18 26.676 28.732 13.406 1.00 99.99 C ATOM 147 CG TYR 18 27.910 28.072 12.838 1.00 99.99 C ATOM 148 CD1 TYR 18 27.843 26.917 12.051 1.00 99.99 C ATOM 149 CD2 TYR 18 29.160 28.586 13.202 1.00 99.99 C ATOM 150 CE1 TYR 18 29.056 26.298 11.724 1.00 99.99 C ATOM 151 CE2 TYR 18 30.362 28.081 12.691 1.00 99.99 C ATOM 152 CZ TYR 18 30.320 26.829 12.046 1.00 99.99 C ATOM 153 OH TYR 18 31.458 26.312 11.500 1.00 99.99 H ATOM 154 N ASP 19 25.904 28.808 10.073 1.00 99.99 N ATOM 155 CA ASP 19 25.155 28.230 8.974 1.00 99.99 C ATOM 156 C ASP 19 25.974 27.205 8.202 1.00 99.99 C ATOM 157 O ASP 19 27.180 27.423 8.117 1.00 99.99 O ATOM 158 CB ASP 19 24.602 29.314 8.055 1.00 99.99 C ATOM 159 CG ASP 19 23.607 28.784 7.032 1.00 99.99 C ATOM 160 OD1 ASP 19 23.791 29.105 5.838 1.00 99.99 O ATOM 161 OD2 ASP 19 22.566 28.207 7.414 1.00 99.99 O ATOM 162 N ILE 20 25.332 26.136 7.722 1.00 99.99 N ATOM 163 CA ILE 20 25.994 25.053 7.024 1.00 99.99 C ATOM 164 C ILE 20 25.237 24.733 5.744 1.00 99.99 C ATOM 165 O ILE 20 24.025 24.526 5.768 1.00 99.99 O ATOM 166 CB ILE 20 26.145 23.797 7.878 1.00 99.99 C ATOM 167 CG1 ILE 20 26.690 23.997 9.289 1.00 99.99 C ATOM 168 CG2 ILE 20 26.882 22.605 7.274 1.00 99.99 C ATOM 169 CD1 ILE 20 26.375 22.816 10.203 1.00 99.99 C ATOM 170 N ARG 21 25.913 24.830 4.597 1.00 99.99 N ATOM 171 CA ARG 21 25.329 24.534 3.303 1.00 99.99 C ATOM 172 C ARG 21 26.062 23.493 2.468 1.00 99.99 C ATOM 173 O ARG 21 27.287 23.503 2.370 1.00 99.99 O ATOM 174 CB ARG 21 25.316 25.854 2.539 1.00 99.99 C ATOM 175 CG ARG 21 24.436 26.885 3.239 1.00 99.99 C ATOM 176 CD ARG 21 24.339 28.103 2.326 1.00 99.99 C ATOM 177 NE ARG 21 23.431 29.134 2.829 1.00 99.99 N ATOM 178 CZ ARG 21 23.077 30.241 2.162 1.00 99.99 C ATOM 179 NH1 ARG 21 23.439 30.402 0.882 1.00 99.99 H ATOM 180 NH2 ARG 21 22.284 31.167 2.718 1.00 99.99 H ATOM 181 N PHE 22 25.331 22.480 1.998 1.00 99.99 N ATOM 182 CA PHE 22 25.932 21.242 1.542 1.00 99.99 C ATOM 183 C PHE 22 25.085 20.645 0.426 1.00 99.99 C ATOM 184 O PHE 22 23.867 20.798 0.419 1.00 99.99 O ATOM 185 CB PHE 22 26.205 20.400 2.784 1.00 99.99 C ATOM 186 CG PHE 22 26.744 18.999 2.617 1.00 99.99 C ATOM 187 CD1 PHE 22 27.815 18.837 1.731 1.00 99.99 C ATOM 188 CD2 PHE 22 26.312 17.970 3.462 1.00 99.99 C ATOM 189 CE1 PHE 22 28.371 17.559 1.599 1.00 99.99 C ATOM 190 CE2 PHE 22 26.909 16.708 3.370 1.00 99.99 C ATOM 191 CZ PHE 22 27.922 16.518 2.422 1.00 99.99 C ATOM 192 N ASP 23 25.703 19.877 -0.475 1.00 99.99 N ATOM 193 CA ASP 23 25.057 19.309 -1.641 1.00 99.99 C ATOM 194 C ASP 23 25.707 17.954 -1.886 1.00 99.99 C ATOM 195 O ASP 23 26.823 17.846 -2.388 1.00 99.99 O ATOM 196 CB ASP 23 25.061 20.197 -2.881 1.00 99.99 C ATOM 197 CG ASP 23 24.172 19.606 -3.966 1.00 99.99 C ATOM 198 OD1 ASP 23 24.394 18.521 -4.547 1.00 99.99 O ATOM 199 OD2 ASP 23 23.171 20.277 -4.301 1.00 99.99 O ATOM 200 N LEU 24 24.956 16.926 -1.484 1.00 99.99 N ATOM 201 CA LEU 24 25.263 15.510 -1.515 1.00 99.99 C ATOM 202 C LEU 24 23.983 14.702 -1.671 1.00 99.99 C ATOM 203 O LEU 24 23.738 14.193 -2.763 1.00 99.99 O ATOM 204 CB LEU 24 26.123 15.122 -0.316 1.00 99.99 C ATOM 205 CG LEU 24 26.407 13.624 -0.271 1.00 99.99 C ATOM 206 CD1 LEU 24 27.142 13.011 -1.460 1.00 99.99 C ATOM 207 CD2 LEU 24 27.113 13.267 1.034 1.00 99.99 C ATOM 208 N GLU 25 23.190 14.569 -0.606 1.00 99.99 N ATOM 209 CA GLU 25 21.880 13.956 -0.514 1.00 99.99 C ATOM 210 C GLU 25 20.908 14.723 0.372 1.00 99.99 C ATOM 211 O GLU 25 21.103 15.105 1.524 1.00 99.99 O ATOM 212 CB GLU 25 22.108 12.526 -0.031 1.00 99.99 C ATOM 213 CG GLU 25 20.812 11.724 0.041 1.00 99.99 C ATOM 214 CD GLU 25 20.254 11.426 -1.344 1.00 99.99 C ATOM 215 OE1 GLU 25 20.602 10.359 -1.893 1.00 99.99 O ATOM 216 OE2 GLU 25 19.432 12.227 -1.840 1.00 99.99 O ATOM 217 N SER 26 19.728 14.986 -0.193 1.00 99.99 N ATOM 218 CA SER 26 18.620 15.703 0.405 1.00 99.99 C ATOM 219 C SER 26 18.144 15.060 1.700 1.00 99.99 C ATOM 220 O SER 26 17.402 14.080 1.680 1.00 99.99 O ATOM 221 CB SER 26 17.443 15.878 -0.551 1.00 99.99 C ATOM 222 OG SER 26 17.521 17.102 -1.246 1.00 99.99 O ATOM 223 N PHE 27 18.388 15.682 2.856 1.00 99.99 N ATOM 224 CA PHE 27 18.013 15.201 4.171 1.00 99.99 C ATOM 225 C PHE 27 17.382 16.260 5.063 1.00 99.99 C ATOM 226 O PHE 27 16.320 16.011 5.631 1.00 99.99 O ATOM 227 CB PHE 27 19.223 14.528 4.814 1.00 99.99 C ATOM 228 CG PHE 27 19.169 13.018 4.815 1.00 99.99 C ATOM 229 CD1 PHE 27 18.397 12.392 5.802 1.00 99.99 C ATOM 230 CD2 PHE 27 20.029 12.274 3.998 1.00 99.99 C ATOM 231 CE1 PHE 27 18.413 10.996 5.908 1.00 99.99 C ATOM 232 CE2 PHE 27 20.103 10.885 4.147 1.00 99.99 C ATOM 233 CZ PHE 27 19.267 10.259 5.079 1.00 99.99 C ATOM 234 N TYR 28 17.896 17.486 5.180 1.00 99.99 N ATOM 235 CA TYR 28 17.487 18.430 6.199 1.00 99.99 C ATOM 236 C TYR 28 17.742 19.888 5.844 1.00 99.99 C ATOM 237 O TYR 28 18.684 20.129 5.092 1.00 99.99 O ATOM 238 CB TYR 28 18.290 18.072 7.447 1.00 99.99 C ATOM 239 CG TYR 28 17.668 18.492 8.757 1.00 99.99 C ATOM 240 CD1 TYR 28 18.174 19.592 9.460 1.00 99.99 C ATOM 241 CD2 TYR 28 16.651 17.699 9.300 1.00 99.99 C ATOM 242 CE1 TYR 28 17.661 19.918 10.721 1.00 99.99 C ATOM 243 CE2 TYR 28 16.169 18.075 10.559 1.00 99.99 C ATOM 244 CZ TYR 28 16.586 19.206 11.289 1.00 99.99 C ATOM 245 OH TYR 28 16.033 19.610 12.469 1.00 99.99 H ATOM 246 N GLY 29 16.982 20.799 6.455 1.00 99.99 N ATOM 247 CA GLY 29 17.013 22.241 6.316 1.00 99.99 C ATOM 248 C GLY 29 16.276 22.974 7.428 1.00 99.99 C ATOM 249 O GLY 29 15.049 23.032 7.441 1.00 99.99 O ATOM 250 N GLY 30 17.024 23.467 8.417 1.00 99.99 N ATOM 251 CA GLY 30 16.497 24.287 9.491 1.00 99.99 C ATOM 252 C GLY 30 17.493 24.658 10.580 1.00 99.99 C ATOM 253 O GLY 30 18.679 24.335 10.572 1.00 99.99 O ATOM 254 N LEU 31 16.985 25.467 11.511 1.00 99.99 N ATOM 255 CA LEU 31 17.571 25.580 12.831 1.00 99.99 C ATOM 256 C LEU 31 17.634 24.279 13.616 1.00 99.99 C ATOM 257 O LEU 31 16.661 23.643 14.016 1.00 99.99 O ATOM 258 CB LEU 31 16.618 26.494 13.598 1.00 99.99 C ATOM 259 CG LEU 31 17.167 27.165 14.853 1.00 99.99 C ATOM 260 CD1 LEU 31 17.665 26.346 16.041 1.00 99.99 C ATOM 261 CD2 LEU 31 18.144 28.303 14.573 1.00 99.99 C ATOM 262 N HIS 32 18.845 23.777 13.869 1.00 99.99 N ATOM 263 CA HIS 32 19.047 22.613 14.708 1.00 99.99 C ATOM 264 C HIS 32 18.854 22.850 16.199 1.00 99.99 C ATOM 265 O HIS 32 17.906 22.362 16.808 1.00 99.99 O ATOM 266 CB HIS 32 20.468 22.124 14.440 1.00 99.99 C ATOM 267 CG HIS 32 20.948 20.996 15.310 1.00 99.99 C ATOM 268 ND1 HIS 32 22.178 20.949 15.946 1.00 99.99 N ATOM 269 CD2 HIS 32 20.388 19.741 15.266 1.00 99.99 C ATOM 270 CE1 HIS 32 22.334 19.655 16.272 1.00 99.99 C ATOM 271 NE2 HIS 32 21.292 18.901 15.914 1.00 99.99 N ATOM 272 N CYS 33 19.814 23.533 16.828 1.00 99.99 N ATOM 273 CA CYS 33 19.827 23.841 18.243 1.00 99.99 C ATOM 274 C CYS 33 20.343 25.255 18.473 1.00 99.99 C ATOM 275 O CYS 33 19.645 25.966 19.193 1.00 99.99 O ATOM 276 CB CYS 33 20.712 22.826 18.963 1.00 99.99 C ATOM 277 SG CYS 33 19.940 21.194 18.836 1.00 99.99 S ATOM 278 N GLY 34 21.330 25.656 17.669 1.00 99.99 N ATOM 279 CA GLY 34 21.777 27.033 17.602 1.00 99.99 C ATOM 280 C GLY 34 22.420 27.456 16.289 1.00 99.99 C ATOM 281 O GLY 34 22.397 28.622 15.900 1.00 99.99 O ATOM 282 N GLU 35 22.865 26.448 15.535 1.00 99.99 N ATOM 283 CA GLU 35 23.303 26.550 14.158 1.00 99.99 C ATOM 284 C GLU 35 22.074 26.378 13.278 1.00 99.99 C ATOM 285 O GLU 35 20.984 26.000 13.703 1.00 99.99 O ATOM 286 CB GLU 35 24.456 25.586 13.891 1.00 99.99 C ATOM 287 CG GLU 35 24.043 24.118 13.955 1.00 99.99 C ATOM 288 CD GLU 35 23.900 23.507 15.342 1.00 99.99 C ATOM 289 OE1 GLU 35 24.699 22.584 15.612 1.00 99.99 O ATOM 290 OE2 GLU 35 23.009 23.848 16.149 1.00 99.99 O ATOM 291 N CYS 36 22.298 26.533 11.971 1.00 99.99 N ATOM 292 CA CYS 36 21.392 26.133 10.914 1.00 99.99 C ATOM 293 C CYS 36 22.163 25.179 10.013 1.00 99.99 C ATOM 294 O CYS 36 23.374 25.313 9.852 1.00 99.99 O ATOM 295 CB CYS 36 21.006 27.370 10.107 1.00 99.99 C ATOM 296 SG CYS 36 19.940 28.478 11.063 1.00 99.99 S ATOM 297 N PHE 37 21.432 24.216 9.447 1.00 99.99 N ATOM 298 CA PHE 37 21.946 23.138 8.626 1.00 99.99 C ATOM 299 C PHE 37 20.949 22.850 7.514 1.00 99.99 C ATOM 300 O PHE 37 19.756 22.741 7.783 1.00 99.99 O ATOM 301 CB PHE 37 22.196 21.856 9.417 1.00 99.99 C ATOM 302 CG PHE 37 22.620 20.668 8.587 1.00 99.99 C ATOM 303 CD1 PHE 37 22.132 19.427 9.009 1.00 99.99 C ATOM 304 CD2 PHE 37 23.471 20.778 7.480 1.00 99.99 C ATOM 305 CE1 PHE 37 22.455 18.269 8.290 1.00 99.99 C ATOM 306 CE2 PHE 37 23.892 19.592 6.867 1.00 99.99 C ATOM 307 CZ PHE 37 23.434 18.339 7.291 1.00 99.99 C ATOM 308 N ASP 38 21.470 22.938 6.287 1.00 99.99 N ATOM 309 CA ASP 38 20.903 22.678 4.980 1.00 99.99 C ATOM 310 C ASP 38 21.727 21.807 4.042 1.00 99.99 C ATOM 311 O ASP 38 22.852 22.171 3.706 1.00 99.99 O ATOM 312 CB ASP 38 20.641 24.052 4.369 1.00 99.99 C ATOM 313 CG ASP 38 19.914 23.855 3.046 1.00 99.99 C ATOM 314 OD1 ASP 38 20.389 24.278 1.971 1.00 99.99 O ATOM 315 OD2 ASP 38 18.741 23.429 3.127 1.00 99.99 O ATOM 316 N VAL 39 21.124 20.677 3.665 1.00 99.99 N ATOM 317 CA VAL 39 21.671 19.726 2.720 1.00 99.99 C ATOM 318 C VAL 39 20.708 19.151 1.691 1.00 99.99 C ATOM 319 O VAL 39 19.718 18.469 1.945 1.00 99.99 O ATOM 320 CB VAL 39 22.376 18.628 3.511 1.00 99.99 C ATOM 321 CG1 VAL 39 21.452 17.897 4.481 1.00 99.99 C ATOM 322 CG2 VAL 39 23.097 17.633 2.606 1.00 99.99 C ATOM 323 N LYS 40 21.168 19.343 0.452 1.00 99.99 N ATOM 324 CA LYS 40 20.322 19.138 -0.706 1.00 99.99 C ATOM 325 C LYS 40 20.945 18.124 -1.654 1.00 99.99 C ATOM 326 O LYS 40 21.954 17.511 -1.313 1.00 99.99 O ATOM 327 CB LYS 40 19.911 20.464 -1.337 1.00 99.99 C ATOM 328 CG LYS 40 19.088 21.360 -0.415 1.00 99.99 C ATOM 329 CD LYS 40 18.100 22.399 -0.937 1.00 99.99 C ATOM 330 CE LYS 40 16.783 21.829 -1.453 1.00 99.99 C ATOM 331 NZ LYS 40 15.790 22.913 -1.484 1.00 99.99 N ATOM 332 N VAL 41 20.380 17.914 -2.845 1.00 99.99 N ATOM 333 CA VAL 41 21.175 17.441 -3.960 1.00 99.99 C ATOM 334 C VAL 41 20.765 18.203 -5.213 1.00 99.99 C ATOM 335 O VAL 41 19.589 18.264 -5.560 1.00 99.99 O ATOM 336 CB VAL 41 21.066 15.923 -4.085 1.00 99.99 C ATOM 337 CG1 VAL 41 19.710 15.301 -4.403 1.00 99.99 C ATOM 338 CG2 VAL 41 22.006 15.477 -5.201 1.00 99.99 C ATOM 339 N LYS 42 21.695 18.650 -6.061 1.00 99.99 N ATOM 340 CA LYS 42 21.629 19.061 -7.448 1.00 99.99 C ATOM 341 C LYS 42 22.960 18.755 -8.120 1.00 99.99 C ATOM 342 O LYS 42 23.004 17.780 -8.867 1.00 99.99 O ATOM 343 CB LYS 42 21.165 20.500 -7.655 1.00 99.99 C ATOM 344 CG LYS 42 20.406 20.762 -8.952 1.00 99.99 C ATOM 345 CD LYS 42 20.186 22.202 -9.408 1.00 99.99 C ATOM 346 CE LYS 42 19.047 22.913 -8.683 1.00 99.99 C ATOM 347 NZ LYS 42 17.763 22.603 -9.331 1.00 99.99 N ATOM 348 N ASP 43 24.020 19.501 -7.801 1.00 99.99 N ATOM 349 CA ASP 43 25.364 19.167 -8.228 1.00 99.99 C ATOM 350 C ASP 43 26.342 19.272 -7.067 1.00 99.99 C ATOM 351 O ASP 43 26.424 20.327 -6.442 1.00 99.99 O ATOM 352 CB ASP 43 25.607 20.139 -9.379 1.00 99.99 C ATOM 353 CG ASP 43 27.010 19.992 -9.949 1.00 99.99 C ATOM 354 OD1 ASP 43 27.537 18.862 -10.037 1.00 99.99 O ATOM 355 OD2 ASP 43 27.539 21.046 -10.366 1.00 99.99 O ATOM 356 N VAL 44 26.940 18.125 -6.736 1.00 99.99 N ATOM 357 CA VAL 44 27.666 17.958 -5.492 1.00 99.99 C ATOM 358 C VAL 44 28.666 19.034 -5.098 1.00 99.99 C ATOM 359 O VAL 44 29.619 19.253 -5.843 1.00 99.99 O ATOM 360 CB VAL 44 28.271 16.565 -5.345 1.00 99.99 C ATOM 361 CG1 VAL 44 27.154 15.558 -5.082 1.00 99.99 C ATOM 362 CG2 VAL 44 29.268 16.049 -6.379 1.00 99.99 C ATOM 363 N TRP 45 28.600 19.602 -3.892 1.00 99.99 N ATOM 364 CA TRP 45 29.407 20.696 -3.388 1.00 99.99 C ATOM 365 C TRP 45 29.841 20.533 -1.939 1.00 99.99 C ATOM 366 O TRP 45 29.000 20.091 -1.159 1.00 99.99 O ATOM 367 CB TRP 45 28.691 22.000 -3.726 1.00 99.99 C ATOM 368 CG TRP 45 29.709 23.094 -3.744 1.00 99.99 C ATOM 369 CD1 TRP 45 29.809 24.023 -2.767 1.00 99.99 C ATOM 370 CD2 TRP 45 30.638 23.518 -4.786 1.00 99.99 C ATOM 371 NE1 TRP 45 30.790 24.937 -3.098 1.00 99.99 N ATOM 372 CE2 TRP 45 31.351 24.656 -4.327 1.00 99.99 C ATOM 373 CE3 TRP 45 30.930 23.123 -6.101 1.00 99.99 C ATOM 374 CZ2 TRP 45 32.311 25.324 -5.098 1.00 99.99 C ATOM 375 CZ3 TRP 45 31.894 23.770 -6.884 1.00 99.99 C ATOM 376 CH2 TRP 45 32.619 24.857 -6.381 1.00 99.99 H ATOM 377 N VAL 46 31.124 20.811 -1.691 1.00 99.99 N ATOM 378 CA VAL 46 31.700 20.786 -0.362 1.00 99.99 C ATOM 379 C VAL 46 30.791 21.474 0.647 1.00 99.99 C ATOM 380 O VAL 46 30.120 22.438 0.289 1.00 99.99 O ATOM 381 CB VAL 46 33.154 21.246 -0.309 1.00 99.99 C ATOM 382 CG1 VAL 46 33.973 20.163 -1.007 1.00 99.99 C ATOM 383 CG2 VAL 46 33.383 22.571 -1.030 1.00 99.99 C ATOM 384 N PRO 47 30.803 21.071 1.920 1.00 99.99 N ATOM 385 CA PRO 47 30.135 21.785 2.989 1.00 99.99 C ATOM 386 C PRO 47 30.781 23.087 3.444 1.00 99.99 C ATOM 387 O PRO 47 31.741 23.161 4.208 1.00 99.99 O ATOM 388 CB PRO 47 29.968 20.730 4.078 1.00 99.99 C ATOM 389 CG PRO 47 31.078 19.706 3.854 1.00 99.99 C ATOM 390 CD PRO 47 31.297 19.776 2.346 1.00 99.99 C ATOM 391 N VAL 48 30.171 24.162 2.941 1.00 99.99 N ATOM 392 CA VAL 48 30.695 25.472 3.267 1.00 99.99 C ATOM 393 C VAL 48 29.889 25.956 4.464 1.00 99.99 C ATOM 394 O VAL 48 28.701 25.696 4.642 1.00 99.99 O ATOM 395 CB VAL 48 30.553 26.327 2.011 1.00 99.99 C ATOM 396 CG1 VAL 48 31.180 27.698 2.245 1.00 99.99 C ATOM 397 CG2 VAL 48 31.099 25.764 0.702 1.00 99.99 C ATOM 398 N ARG 49 30.579 26.655 5.369 1.00 99.99 N ATOM 399 CA ARG 49 30.047 26.957 6.683 1.00 99.99 C ATOM 400 C ARG 49 30.595 28.307 7.121 1.00 99.99 C ATOM 401 O ARG 49 31.784 28.613 7.061 1.00 99.99 O ATOM 402 CB ARG 49 30.341 25.865 7.707 1.00 99.99 C ATOM 403 CG ARG 49 31.723 25.220 7.634 1.00 99.99 C ATOM 404 CD ARG 49 31.588 23.822 8.230 1.00 99.99 C ATOM 405 NE ARG 49 31.397 23.766 9.679 1.00 99.99 N ATOM 406 CZ ARG 49 30.782 22.745 10.293 1.00 99.99 C ATOM 407 NH1 ARG 49 30.535 21.540 9.760 1.00 99.99 H ATOM 408 NH2 ARG 49 30.369 22.859 11.563 1.00 99.99 H ATOM 409 N ILE 50 29.695 29.162 7.616 1.00 99.99 N ATOM 410 CA ILE 50 29.981 30.570 7.794 1.00 99.99 C ATOM 411 C ILE 50 29.582 30.982 9.204 1.00 99.99 C ATOM 412 O ILE 50 28.583 30.542 9.769 1.00 99.99 O ATOM 413 CB ILE 50 29.307 31.414 6.715 1.00 99.99 C ATOM 414 CG1 ILE 50 27.784 31.454 6.631 1.00 99.99 C ATOM 415 CG2 ILE 50 29.863 30.990 5.358 1.00 99.99 C ATOM 416 CD1 ILE 50 27.216 32.641 5.858 1.00 99.99 C ATOM 417 N GLU 51 30.266 31.938 9.839 1.00 99.99 N ATOM 418 CA GLU 51 30.158 32.211 11.257 1.00 99.99 C ATOM 419 C GLU 51 29.079 33.221 11.621 1.00 99.99 C ATOM 420 O GLU 51 28.902 34.306 11.026 1.00 99.99 O ATOM 421 CB GLU 51 31.557 32.653 11.676 1.00 99.99 C ATOM 422 CG GLU 51 31.752 32.981 13.154 1.00 99.99 C ATOM 423 CD GLU 51 33.231 33.221 13.425 1.00 99.99 C ATOM 424 OE1 GLU 51 33.808 34.309 13.214 1.00 99.99 O ATOM 425 OE2 GLU 51 33.845 32.236 13.889 1.00 99.99 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 284 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 66.62 48.5 66 48.5 136 ARMSMC SECONDARY STRUCTURE . . 43.25 63.2 38 52.8 72 ARMSMC SURFACE . . . . . . . . 77.48 40.0 45 45.9 98 ARMSMC BURIED . . . . . . . . 32.93 66.7 21 55.3 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.86 22.6 31 50.8 61 ARMSSC1 RELIABLE SIDE CHAINS . 93.50 26.9 26 49.1 53 ARMSSC1 SECONDARY STRUCTURE . . 103.24 15.0 20 57.1 35 ARMSSC1 SURFACE . . . . . . . . 95.31 23.8 21 47.7 44 ARMSSC1 BURIED . . . . . . . . 100.03 20.0 10 58.8 17 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.31 43.5 23 50.0 46 ARMSSC2 RELIABLE SIDE CHAINS . 72.35 45.0 20 54.1 37 ARMSSC2 SECONDARY STRUCTURE . . 72.93 42.9 14 53.8 26 ARMSSC2 SURFACE . . . . . . . . 78.98 43.8 16 48.5 33 ARMSSC2 BURIED . . . . . . . . 62.34 42.9 7 53.8 13 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.50 14.3 7 43.8 16 ARMSSC3 RELIABLE SIDE CHAINS . 92.50 14.3 7 43.8 16 ARMSSC3 SECONDARY STRUCTURE . . 109.76 0.0 4 44.4 9 ARMSSC3 SURFACE . . . . . . . . 99.89 0.0 6 40.0 15 ARMSSC3 BURIED . . . . . . . . 4.61 100.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 113.09 0.0 4 44.4 9 ARMSSC4 RELIABLE SIDE CHAINS . 113.09 0.0 4 44.4 9 ARMSSC4 SECONDARY STRUCTURE . . 117.99 0.0 3 50.0 6 ARMSSC4 SURFACE . . . . . . . . 113.09 0.0 4 44.4 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.85 (Number of atoms: 34) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.85 34 49.3 69 CRMSCA CRN = ALL/NP . . . . . 0.2308 CRMSCA SECONDARY STRUCTURE . . 8.07 20 55.6 36 CRMSCA SURFACE . . . . . . . . 8.38 23 46.0 50 CRMSCA BURIED . . . . . . . . 6.60 11 57.9 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.03 167 49.6 337 CRMSMC SECONDARY STRUCTURE . . 8.28 100 55.9 179 CRMSMC SURFACE . . . . . . . . 8.48 113 46.3 244 CRMSMC BURIED . . . . . . . . 6.98 54 58.1 93 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.91 148 50.3 294 CRMSSC RELIABLE SIDE CHAINS . 9.85 130 50.4 258 CRMSSC SECONDARY STRUCTURE . . 10.00 96 53.3 180 CRMSSC SURFACE . . . . . . . . 10.44 103 47.7 216 CRMSSC BURIED . . . . . . . . 8.58 45 57.7 78 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.97 284 49.8 570 CRMSALL SECONDARY STRUCTURE . . 9.19 176 54.3 324 CRMSALL SURFACE . . . . . . . . 9.45 195 46.9 416 CRMSALL BURIED . . . . . . . . 7.81 89 57.8 154 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.831 0.868 0.877 34 49.3 69 ERRCA SECONDARY STRUCTURE . . 92.535 0.863 0.873 20 55.6 36 ERRCA SURFACE . . . . . . . . 92.264 0.858 0.869 23 46.0 50 ERRCA BURIED . . . . . . . . 94.015 0.889 0.895 11 57.9 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.686 0.866 0.875 167 49.6 337 ERRMC SECONDARY STRUCTURE . . 92.394 0.861 0.871 100 55.9 179 ERRMC SURFACE . . . . . . . . 92.202 0.857 0.868 113 46.3 244 ERRMC BURIED . . . . . . . . 93.699 0.883 0.891 54 58.1 93 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.991 0.838 0.852 148 50.3 294 ERRSC RELIABLE SIDE CHAINS . 90.999 0.837 0.851 130 50.4 258 ERRSC SECONDARY STRUCTURE . . 90.729 0.833 0.847 96 53.3 180 ERRSC SURFACE . . . . . . . . 90.421 0.828 0.843 103 47.7 216 ERRSC BURIED . . . . . . . . 92.297 0.859 0.870 45 57.7 78 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.887 0.852 0.864 284 49.8 570 ERRALL SECONDARY STRUCTURE . . 91.562 0.847 0.859 176 54.3 324 ERRALL SURFACE . . . . . . . . 91.367 0.844 0.857 195 46.9 416 ERRALL BURIED . . . . . . . . 93.028 0.872 0.881 89 57.8 154 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 13 27 34 69 DISTCA CA (P) 0.00 0.00 4.35 18.84 39.13 69 DISTCA CA (RMS) 0.00 0.00 2.51 3.79 6.45 DISTCA ALL (N) 1 3 22 73 199 284 570 DISTALL ALL (P) 0.18 0.53 3.86 12.81 34.91 570 DISTALL ALL (RMS) 0.86 1.31 2.48 3.68 6.46 DISTALL END of the results output