####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 34 ( 284), selected 34 , name T0624TS331_1-D1 # Molecule2: number of CA atoms 69 ( 570), selected 34 , name T0624-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0624TS331_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 26 - 51 4.97 7.25 LCS_AVERAGE: 35.29 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 34 - 51 1.97 9.51 LCS_AVERAGE: 18.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 38 - 47 0.94 9.15 LCS_AVERAGE: 9.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 34 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Y 18 Y 18 4 6 19 3 4 4 6 6 7 8 10 12 14 15 17 18 18 19 20 20 21 22 25 LCS_GDT D 19 D 19 4 6 19 3 4 4 6 6 8 9 10 11 12 15 17 19 23 23 24 25 25 25 26 LCS_GDT I 20 I 20 4 6 19 3 4 4 6 6 8 9 11 13 14 18 22 23 24 27 29 30 31 31 32 LCS_GDT R 21 R 21 4 6 19 3 4 4 6 6 7 7 10 12 14 17 22 24 27 29 29 30 31 31 32 LCS_GDT F 22 F 22 5 6 19 3 4 5 7 7 8 11 13 14 16 21 25 26 27 29 29 30 31 31 32 LCS_GDT D 23 D 23 5 6 19 4 4 5 7 7 8 11 13 14 16 21 25 26 27 29 29 30 31 31 32 LCS_GDT L 24 L 24 5 6 19 4 4 5 7 7 8 11 12 14 16 17 22 26 27 29 29 30 31 31 32 LCS_GDT E 25 E 25 5 6 19 4 4 5 7 7 8 11 13 14 16 20 25 26 27 29 29 30 31 31 32 LCS_GDT S 26 S 26 5 6 26 4 4 5 7 7 8 11 13 17 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT F 27 F 27 4 6 26 3 3 4 7 7 8 11 13 14 18 21 25 26 27 29 29 30 31 31 32 LCS_GDT Y 28 Y 28 4 7 26 3 3 4 4 5 8 9 9 12 14 15 18 20 26 28 29 30 31 31 32 LCS_GDT G 29 G 29 6 7 26 4 5 6 7 7 7 9 10 12 14 15 17 19 19 21 23 29 31 31 32 LCS_GDT G 30 G 30 6 7 26 4 5 6 7 7 8 9 12 14 16 21 25 26 27 29 29 30 31 31 32 LCS_GDT L 31 L 31 6 7 26 4 5 6 7 7 10 14 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT H 32 H 32 6 7 26 4 5 6 7 7 8 9 11 13 16 21 25 26 27 29 29 30 31 31 32 LCS_GDT C 33 C 33 6 7 26 3 5 6 7 7 8 9 11 13 16 21 25 26 27 29 29 30 31 31 32 LCS_GDT G 34 G 34 6 18 26 3 7 11 11 12 15 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT E 35 E 35 4 18 26 4 8 11 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT C 36 C 36 4 18 26 3 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT F 37 F 37 4 18 26 3 6 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT D 38 D 38 10 18 26 3 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT V 39 V 39 10 18 26 4 7 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT K 40 K 40 10 18 26 4 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT V 41 V 41 10 18 26 4 7 11 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT K 42 K 42 10 18 26 3 7 11 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT D 43 D 43 10 18 26 3 7 11 12 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT V 44 V 44 10 18 26 3 9 12 14 17 17 18 18 19 20 21 23 26 27 29 29 30 31 31 32 LCS_GDT W 45 W 45 10 18 26 4 9 12 14 17 17 18 18 19 20 21 23 26 27 29 29 30 31 31 32 LCS_GDT V 46 V 46 10 18 26 4 8 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT P 47 P 47 10 18 26 4 8 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT V 48 V 48 8 18 26 4 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT R 49 R 49 8 18 26 4 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT I 50 I 50 8 18 26 4 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_GDT E 51 E 51 8 18 26 4 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 LCS_AVERAGE LCS_A: 21.07 ( 9.76 18.16 35.29 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 9 12 14 17 17 18 18 19 20 21 25 26 27 29 29 30 31 31 32 GDT PERCENT_AT 5.80 13.04 17.39 20.29 24.64 24.64 26.09 26.09 27.54 28.99 30.43 36.23 37.68 39.13 42.03 42.03 43.48 44.93 44.93 46.38 GDT RMS_LOCAL 0.19 0.77 0.97 1.23 1.66 1.66 1.97 1.97 2.45 2.99 3.43 4.60 4.64 4.70 5.06 5.06 5.25 5.46 5.46 5.68 GDT RMS_ALL_AT 8.66 9.58 9.80 10.05 9.69 9.69 9.51 9.51 8.71 8.16 7.91 6.82 6.87 6.93 6.78 6.78 6.79 6.72 6.72 6.72 # Checking swapping # possible swapping detected: D 19 D 19 # possible swapping detected: D 23 D 23 # possible swapping detected: F 27 F 27 # possible swapping detected: D 43 D 43 # possible swapping detected: E 51 E 51 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Y 18 Y 18 21.153 0 0.124 1.101 22.369 0.000 0.000 LGA D 19 D 19 19.678 0 0.192 0.335 21.324 0.000 0.000 LGA I 20 I 20 15.952 0 0.123 1.169 17.585 0.000 0.000 LGA R 21 R 21 13.790 0 0.610 0.858 20.640 0.000 0.000 LGA F 22 F 22 11.011 0 0.600 1.255 12.267 0.000 0.000 LGA D 23 D 23 12.546 0 0.151 0.649 13.240 0.000 0.000 LGA L 24 L 24 15.575 0 0.076 0.131 19.952 0.000 0.000 LGA E 25 E 25 14.765 0 0.354 1.256 21.795 0.000 0.000 LGA S 26 S 26 10.336 0 0.554 0.850 11.853 1.905 1.984 LGA F 27 F 27 10.838 0 0.396 0.464 14.095 0.000 0.000 LGA Y 28 Y 28 12.496 0 0.035 0.145 19.299 0.000 0.000 LGA G 29 G 29 13.933 0 0.717 0.717 13.933 0.000 0.000 LGA G 30 G 30 10.933 0 0.147 0.147 11.602 0.119 0.119 LGA L 31 L 31 7.321 0 0.083 1.394 11.101 4.048 15.536 LGA H 32 H 32 11.389 0 0.491 1.382 16.831 0.119 0.048 LGA C 33 C 33 10.389 0 0.511 0.612 15.649 4.286 2.857 LGA G 34 G 34 4.350 0 0.189 0.189 6.479 50.000 50.000 LGA E 35 E 35 2.893 0 0.698 1.265 8.590 60.952 31.958 LGA C 36 C 36 1.668 0 0.019 0.762 4.475 75.000 66.984 LGA F 37 F 37 2.307 0 0.252 1.050 4.134 70.833 60.519 LGA D 38 D 38 1.204 0 0.149 0.974 2.476 75.119 74.048 LGA V 39 V 39 2.099 0 0.070 1.020 3.272 72.976 65.170 LGA K 40 K 40 1.007 0 0.172 0.682 1.762 81.548 78.624 LGA V 41 V 41 1.701 0 0.065 0.081 2.332 75.000 71.769 LGA K 42 K 42 1.834 0 0.237 0.788 8.602 75.000 47.778 LGA D 43 D 43 2.547 0 0.244 1.128 4.050 69.048 63.690 LGA V 44 V 44 0.602 0 0.146 0.969 3.602 92.857 82.585 LGA W 45 W 45 0.775 0 0.097 1.033 7.885 90.476 51.156 LGA V 46 V 46 1.323 0 0.005 0.159 1.523 83.690 81.497 LGA P 47 P 47 1.251 0 0.167 0.154 1.864 83.690 79.048 LGA V 48 V 48 1.710 0 0.187 1.162 3.443 71.071 67.415 LGA R 49 R 49 1.936 0 0.114 1.346 4.023 72.857 64.848 LGA I 50 I 50 0.788 0 0.033 1.193 4.476 81.548 71.190 LGA E 51 E 51 1.880 0 0.166 1.212 7.672 70.952 49.524 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 34 136 136 100.00 284 284 100.00 69 SUMMARY(RMSD_GDC): 6.627 6.582 7.507 19.755 17.077 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 34 69 4.0 18 1.97 25.362 24.365 0.868 LGA_LOCAL RMSD: 1.974 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.508 Number of assigned atoms: 34 Std_ASGN_ATOMS RMSD: 6.627 Standard rmsd on all 34 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.761473 * X + -0.629346 * Y + -0.155181 * Z + 32.984539 Y_new = -0.445324 * X + -0.681895 * Y + 0.580263 * Z + 41.326115 Z_new = -0.471004 * X + -0.372749 * Y + -0.799508 * Z + 59.020847 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.529182 0.490429 -2.705330 [DEG: -30.3199 28.0995 -155.0040 ] ZXZ: -2.880275 2.497272 -2.240267 [DEG: -165.0276 143.0832 -128.3578 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0624TS331_1-D1 REMARK 2: T0624-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0624TS331_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 34 69 4.0 18 1.97 24.365 6.63 REMARK ---------------------------------------------------------- MOLECULE T0624TS331_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0624 REMARK MODEL 1 REMARK PARENT N/A ATOM 142 N TYR 18 33.619 22.858 22.452 1.00 99.99 N ATOM 143 CA TYR 18 33.845 22.968 21.003 1.00 99.99 C ATOM 144 C TYR 18 34.397 21.638 20.513 1.00 99.99 C ATOM 145 O TYR 18 35.326 21.067 21.080 1.00 99.99 O ATOM 146 CB TYR 18 34.751 24.105 20.537 1.00 99.99 C ATOM 147 CG TYR 18 35.098 24.036 19.069 1.00 99.99 C ATOM 148 CD1 TYR 18 36.387 23.666 18.666 1.00 99.99 C ATOM 149 CD2 TYR 18 34.075 24.441 18.203 1.00 99.99 C ATOM 150 CE1 TYR 18 36.635 23.485 17.300 1.00 99.99 C ATOM 151 CE2 TYR 18 34.401 24.339 16.845 1.00 99.99 C ATOM 152 CZ TYR 18 35.616 23.800 16.380 1.00 99.99 C ATOM 153 OH TYR 18 35.935 23.660 15.061 1.00 99.99 H ATOM 154 N ASP 19 33.827 21.131 19.418 1.00 99.99 N ATOM 155 CA ASP 19 34.219 20.002 18.599 1.00 99.99 C ATOM 156 C ASP 19 34.061 20.207 17.099 1.00 99.99 C ATOM 157 O ASP 19 33.040 20.641 16.569 1.00 99.99 O ATOM 158 CB ASP 19 33.543 18.729 19.099 1.00 99.99 C ATOM 159 CG ASP 19 34.108 17.475 18.447 1.00 99.99 C ATOM 160 OD1 ASP 19 33.324 16.519 18.265 1.00 99.99 O ATOM 161 OD2 ASP 19 35.352 17.353 18.455 1.00 99.99 O ATOM 162 N ILE 20 35.129 19.859 16.378 1.00 99.99 N ATOM 163 CA ILE 20 35.200 19.912 14.932 1.00 99.99 C ATOM 164 C ILE 20 34.071 19.206 14.194 1.00 99.99 C ATOM 165 O ILE 20 33.925 17.988 14.113 1.00 99.99 O ATOM 166 CB ILE 20 36.573 19.539 14.382 1.00 99.99 C ATOM 167 CG1 ILE 20 36.628 19.842 12.887 1.00 99.99 C ATOM 168 CG2 ILE 20 36.963 18.080 14.601 1.00 99.99 C ATOM 169 CD1 ILE 20 38.042 19.791 12.315 1.00 99.99 C ATOM 170 N ARG 21 33.274 20.008 13.484 1.00 99.99 N ATOM 171 CA ARG 21 32.238 19.616 12.550 1.00 99.99 C ATOM 172 C ARG 21 32.736 20.025 11.171 1.00 99.99 C ATOM 173 O ARG 21 32.479 19.315 10.200 1.00 99.99 O ATOM 174 CB ARG 21 30.867 20.167 12.935 1.00 99.99 C ATOM 175 CG ARG 21 29.736 20.274 11.916 1.00 99.99 C ATOM 176 CD ARG 21 28.979 18.953 11.826 1.00 99.99 C ATOM 177 NE ARG 21 28.251 18.567 13.035 1.00 99.99 N ATOM 178 CZ ARG 21 28.429 17.545 13.884 1.00 99.99 C ATOM 179 NH1 ARG 21 29.400 16.641 13.697 1.00 99.99 H ATOM 180 NH2 ARG 21 27.732 17.559 15.028 1.00 99.99 H ATOM 181 N PHE 22 33.458 21.143 11.077 1.00 99.99 N ATOM 182 CA PHE 22 34.013 21.537 9.797 1.00 99.99 C ATOM 183 C PHE 22 34.772 20.426 9.085 1.00 99.99 C ATOM 184 O PHE 22 35.601 19.715 9.649 1.00 99.99 O ATOM 185 CB PHE 22 34.888 22.773 9.983 1.00 99.99 C ATOM 186 CG PHE 22 35.770 23.011 8.781 1.00 99.99 C ATOM 187 CD1 PHE 22 37.041 22.446 8.628 1.00 99.99 C ATOM 188 CD2 PHE 22 35.108 23.569 7.681 1.00 99.99 C ATOM 189 CE1 PHE 22 37.638 22.533 7.365 1.00 99.99 C ATOM 190 CE2 PHE 22 35.770 23.752 6.461 1.00 99.99 C ATOM 191 CZ PHE 22 37.063 23.240 6.301 1.00 99.99 C ATOM 192 N ASP 23 34.564 20.358 7.769 1.00 99.99 N ATOM 193 CA ASP 23 35.382 19.603 6.841 1.00 99.99 C ATOM 194 C ASP 23 35.490 20.255 5.470 1.00 99.99 C ATOM 195 O ASP 23 34.523 20.788 4.930 1.00 99.99 O ATOM 196 CB ASP 23 34.917 18.161 6.655 1.00 99.99 C ATOM 197 CG ASP 23 35.756 17.395 5.642 1.00 99.99 C ATOM 198 OD1 ASP 23 36.677 16.694 6.113 1.00 99.99 O ATOM 199 OD2 ASP 23 35.410 17.441 4.442 1.00 99.99 O ATOM 200 N LEU 24 36.719 20.230 4.948 1.00 99.99 N ATOM 201 CA LEU 24 37.091 20.798 3.668 1.00 99.99 C ATOM 202 C LEU 24 36.305 20.342 2.447 1.00 99.99 C ATOM 203 O LEU 24 36.135 21.052 1.458 1.00 99.99 O ATOM 204 CB LEU 24 38.557 20.419 3.468 1.00 99.99 C ATOM 205 CG LEU 24 39.263 20.921 2.212 1.00 99.99 C ATOM 206 CD1 LEU 24 39.169 22.442 2.146 1.00 99.99 C ATOM 207 CD2 LEU 24 40.745 20.558 2.228 1.00 99.99 C ATOM 208 N GLU 25 35.618 19.198 2.460 1.00 99.99 N ATOM 209 CA GLU 25 34.947 18.563 1.344 1.00 99.99 C ATOM 210 C GLU 25 33.472 18.222 1.509 1.00 99.99 C ATOM 211 O GLU 25 32.733 18.232 0.528 1.00 99.99 O ATOM 212 CB GLU 25 35.745 17.323 0.951 1.00 99.99 C ATOM 213 CG GLU 25 37.223 17.547 0.640 1.00 99.99 C ATOM 214 CD GLU 25 38.103 16.407 0.151 1.00 99.99 C ATOM 215 OE1 GLU 25 38.968 15.957 0.934 1.00 99.99 O ATOM 216 OE2 GLU 25 37.938 15.871 -0.967 1.00 99.99 O ATOM 217 N SER 26 33.071 17.849 2.727 1.00 99.99 N ATOM 218 CA SER 26 31.756 17.642 3.299 1.00 99.99 C ATOM 219 C SER 26 31.199 18.949 3.845 1.00 99.99 C ATOM 220 O SER 26 30.215 19.450 3.304 1.00 99.99 O ATOM 221 CB SER 26 31.672 16.538 4.349 1.00 99.99 C ATOM 222 OG SER 26 32.017 15.310 3.747 1.00 99.99 O ATOM 223 N PHE 27 31.705 19.440 4.979 1.00 99.99 N ATOM 224 CA PHE 27 31.048 20.372 5.874 1.00 99.99 C ATOM 225 C PHE 27 31.762 21.712 5.961 1.00 99.99 C ATOM 226 O PHE 27 32.363 22.184 6.924 1.00 99.99 O ATOM 227 CB PHE 27 30.975 19.721 7.252 1.00 99.99 C ATOM 228 CG PHE 27 30.153 18.455 7.295 1.00 99.99 C ATOM 229 CD1 PHE 27 30.659 17.217 7.710 1.00 99.99 C ATOM 230 CD2 PHE 27 28.817 18.541 6.887 1.00 99.99 C ATOM 231 CE1 PHE 27 29.789 16.120 7.721 1.00 99.99 C ATOM 232 CE2 PHE 27 27.963 17.433 6.814 1.00 99.99 C ATOM 233 CZ PHE 27 28.485 16.199 7.217 1.00 99.99 C ATOM 234 N TYR 28 31.710 22.378 4.805 1.00 99.99 N ATOM 235 CA TYR 28 32.226 23.729 4.708 1.00 99.99 C ATOM 236 C TYR 28 31.884 24.641 5.878 1.00 99.99 C ATOM 237 O TYR 28 32.702 25.424 6.355 1.00 99.99 O ATOM 238 CB TYR 28 31.648 24.390 3.460 1.00 99.99 C ATOM 239 CG TYR 28 32.275 25.727 3.143 1.00 99.99 C ATOM 240 CD1 TYR 28 33.591 25.774 2.666 1.00 99.99 C ATOM 241 CD2 TYR 28 31.629 26.899 3.554 1.00 99.99 C ATOM 242 CE1 TYR 28 34.257 27.003 2.576 1.00 99.99 C ATOM 243 CE2 TYR 28 32.253 28.126 3.300 1.00 99.99 C ATOM 244 CZ TYR 28 33.593 28.210 2.871 1.00 99.99 C ATOM 245 OH TYR 28 34.158 29.402 2.523 1.00 99.99 H ATOM 246 N GLY 29 30.662 24.486 6.393 1.00 99.99 N ATOM 247 CA GLY 29 30.152 24.870 7.694 1.00 99.99 C ATOM 248 C GLY 29 29.301 23.703 8.177 1.00 99.99 C ATOM 249 O GLY 29 28.993 22.769 7.441 1.00 99.99 O ATOM 250 N GLY 30 28.892 23.784 9.445 1.00 99.99 N ATOM 251 CA GLY 30 27.881 22.849 9.895 1.00 99.99 C ATOM 252 C GLY 30 27.480 23.060 11.348 1.00 99.99 C ATOM 253 O GLY 30 28.265 23.633 12.100 1.00 99.99 O ATOM 254 N LEU 31 26.268 22.705 11.783 1.00 99.99 N ATOM 255 CA LEU 31 25.779 22.882 13.136 1.00 99.99 C ATOM 256 C LEU 31 26.429 21.961 14.159 1.00 99.99 C ATOM 257 O LEU 31 26.340 20.741 14.046 1.00 99.99 O ATOM 258 CB LEU 31 24.261 22.733 13.121 1.00 99.99 C ATOM 259 CG LEU 31 23.561 22.747 14.478 1.00 99.99 C ATOM 260 CD1 LEU 31 23.678 24.066 15.237 1.00 99.99 C ATOM 261 CD2 LEU 31 22.072 22.447 14.333 1.00 99.99 C ATOM 262 N HIS 32 27.081 22.594 15.138 1.00 99.99 N ATOM 263 CA HIS 32 27.820 22.071 16.270 1.00 99.99 C ATOM 264 C HIS 32 26.853 21.260 17.121 1.00 99.99 C ATOM 265 O HIS 32 27.034 20.049 17.015 1.00 99.99 O ATOM 266 CB HIS 32 28.383 23.222 17.100 1.00 99.99 C ATOM 267 CG HIS 32 29.185 22.830 18.311 1.00 99.99 C ATOM 268 ND1 HIS 32 28.742 23.087 19.598 1.00 99.99 N ATOM 269 CD2 HIS 32 30.423 22.243 18.434 1.00 99.99 C ATOM 270 CE1 HIS 32 29.748 22.685 20.392 1.00 99.99 C ATOM 271 NE2 HIS 32 30.783 22.111 19.774 1.00 99.99 N ATOM 272 N CYS 33 25.944 21.888 17.872 1.00 99.99 N ATOM 273 CA CYS 33 24.920 21.246 18.671 1.00 99.99 C ATOM 274 C CYS 33 23.570 21.940 18.549 1.00 99.99 C ATOM 275 O CYS 33 22.662 21.391 17.930 1.00 99.99 O ATOM 276 CB CYS 33 25.439 21.074 20.096 1.00 99.99 C ATOM 277 SG CYS 33 26.787 19.865 20.131 1.00 99.99 S ATOM 278 N GLY 34 23.442 23.158 19.079 1.00 99.99 N ATOM 279 CA GLY 34 22.274 23.992 18.882 1.00 99.99 C ATOM 280 C GLY 34 22.509 25.493 18.965 1.00 99.99 C ATOM 281 O GLY 34 21.642 26.333 19.195 1.00 99.99 O ATOM 282 N GLU 35 23.777 25.901 18.863 1.00 99.99 N ATOM 283 CA GLU 35 24.297 27.250 18.959 1.00 99.99 C ATOM 284 C GLU 35 25.408 27.775 18.062 1.00 99.99 C ATOM 285 O GLU 35 25.559 28.991 17.962 1.00 99.99 O ATOM 286 CB GLU 35 24.866 27.403 20.366 1.00 99.99 C ATOM 287 CG GLU 35 26.151 26.671 20.746 1.00 99.99 C ATOM 288 CD GLU 35 26.063 25.170 20.508 1.00 99.99 C ATOM 289 OE1 GLU 35 25.812 24.358 21.424 1.00 99.99 O ATOM 290 OE2 GLU 35 26.309 24.766 19.351 1.00 99.99 O ATOM 291 N CYS 36 26.206 26.920 17.418 1.00 99.99 N ATOM 292 CA CYS 36 27.285 27.357 16.556 1.00 99.99 C ATOM 293 C CYS 36 27.358 26.545 15.271 1.00 99.99 C ATOM 294 O CYS 36 26.947 25.388 15.226 1.00 99.99 O ATOM 295 CB CYS 36 28.614 27.130 17.270 1.00 99.99 C ATOM 296 SG CYS 36 28.841 28.147 18.749 1.00 99.99 S ATOM 297 N PHE 37 27.762 27.323 14.263 1.00 99.99 N ATOM 298 CA PHE 37 27.971 26.905 12.891 1.00 99.99 C ATOM 299 C PHE 37 29.460 26.916 12.580 1.00 99.99 C ATOM 300 O PHE 37 30.018 28.010 12.533 1.00 99.99 O ATOM 301 CB PHE 37 27.196 27.815 11.942 1.00 99.99 C ATOM 302 CG PHE 37 27.270 27.343 10.510 1.00 99.99 C ATOM 303 CD1 PHE 37 28.135 28.016 9.638 1.00 99.99 C ATOM 304 CD2 PHE 37 26.333 26.458 9.962 1.00 99.99 C ATOM 305 CE1 PHE 37 28.060 27.919 8.244 1.00 99.99 C ATOM 306 CE2 PHE 37 26.222 26.330 8.572 1.00 99.99 C ATOM 307 CZ PHE 37 27.121 27.010 7.741 1.00 99.99 C ATOM 308 N ASP 38 30.103 25.747 12.573 1.00 99.99 N ATOM 309 CA ASP 38 31.544 25.589 12.609 1.00 99.99 C ATOM 310 C ASP 38 32.040 25.458 11.176 1.00 99.99 C ATOM 311 O ASP 38 31.763 24.495 10.464 1.00 99.99 O ATOM 312 CB ASP 38 31.856 24.372 13.476 1.00 99.99 C ATOM 313 CG ASP 38 33.327 23.999 13.357 1.00 99.99 C ATOM 314 OD1 ASP 38 34.273 24.816 13.383 1.00 99.99 O ATOM 315 OD2 ASP 38 33.514 22.763 13.378 1.00 99.99 O ATOM 316 N VAL 39 32.669 26.545 10.724 1.00 99.99 N ATOM 317 CA VAL 39 32.805 26.966 9.344 1.00 99.99 C ATOM 318 C VAL 39 34.210 27.481 9.064 1.00 99.99 C ATOM 319 O VAL 39 34.814 27.996 10.001 1.00 99.99 O ATOM 320 CB VAL 39 31.727 28.028 9.148 1.00 99.99 C ATOM 321 CG1 VAL 39 31.731 29.272 10.033 1.00 99.99 C ATOM 322 CG2 VAL 39 31.524 28.519 7.717 1.00 99.99 C ATOM 323 N LYS 40 34.751 27.356 7.850 1.00 99.99 N ATOM 324 CA LYS 40 36.006 27.966 7.464 1.00 99.99 C ATOM 325 C LYS 40 35.833 29.461 7.231 1.00 99.99 C ATOM 326 O LYS 40 35.495 29.940 6.151 1.00 99.99 O ATOM 327 CB LYS 40 36.578 27.240 6.250 1.00 99.99 C ATOM 328 CG LYS 40 37.949 27.794 5.871 1.00 99.99 C ATOM 329 CD LYS 40 38.383 27.317 4.488 1.00 99.99 C ATOM 330 CE LYS 40 39.829 27.579 4.076 1.00 99.99 C ATOM 331 NZ LYS 40 40.440 26.647 3.116 1.00 99.99 N ATOM 332 N VAL 41 36.082 30.231 8.293 1.00 99.99 N ATOM 333 CA VAL 41 36.339 31.656 8.252 1.00 99.99 C ATOM 334 C VAL 41 37.793 31.881 7.863 1.00 99.99 C ATOM 335 O VAL 41 38.736 31.788 8.646 1.00 99.99 O ATOM 336 CB VAL 41 36.119 32.307 9.615 1.00 99.99 C ATOM 337 CG1 VAL 41 36.292 33.818 9.476 1.00 99.99 C ATOM 338 CG2 VAL 41 34.698 32.198 10.157 1.00 99.99 C ATOM 339 N LYS 42 37.932 32.233 6.583 1.00 99.99 N ATOM 340 CA LYS 42 39.040 32.378 5.660 1.00 99.99 C ATOM 341 C LYS 42 40.170 31.401 5.952 1.00 99.99 C ATOM 342 O LYS 42 40.421 30.573 5.079 1.00 99.99 O ATOM 343 CB LYS 42 39.642 33.780 5.639 1.00 99.99 C ATOM 344 CG LYS 42 38.545 34.840 5.664 1.00 99.99 C ATOM 345 CD LYS 42 38.966 36.295 5.476 1.00 99.99 C ATOM 346 CE LYS 42 37.830 37.307 5.593 1.00 99.99 C ATOM 347 NZ LYS 42 38.312 38.633 6.007 1.00 99.99 N ATOM 348 N ASP 43 40.893 31.609 7.054 1.00 99.99 N ATOM 349 CA ASP 43 42.134 30.982 7.462 1.00 99.99 C ATOM 350 C ASP 43 41.895 29.568 7.975 1.00 99.99 C ATOM 351 O ASP 43 42.697 28.690 7.664 1.00 99.99 O ATOM 352 CB ASP 43 42.937 31.887 8.392 1.00 99.99 C ATOM 353 CG ASP 43 44.284 31.335 8.832 1.00 99.99 C ATOM 354 OD1 ASP 43 44.521 31.107 10.037 1.00 99.99 O ATOM 355 OD2 ASP 43 45.128 31.069 7.949 1.00 99.99 O ATOM 356 N VAL 44 40.928 29.455 8.888 1.00 99.99 N ATOM 357 CA VAL 44 40.690 28.220 9.607 1.00 99.99 C ATOM 358 C VAL 44 39.195 28.064 9.849 1.00 99.99 C ATOM 359 O VAL 44 38.416 28.855 9.322 1.00 99.99 O ATOM 360 CB VAL 44 41.633 28.082 10.797 1.00 99.99 C ATOM 361 CG1 VAL 44 41.189 29.137 11.807 1.00 99.99 C ATOM 362 CG2 VAL 44 41.807 26.717 11.456 1.00 99.99 C ATOM 363 N TRP 45 38.840 27.023 10.606 1.00 99.99 N ATOM 364 CA TRP 45 37.507 26.751 11.103 1.00 99.99 C ATOM 365 C TRP 45 37.166 27.432 12.421 1.00 99.99 C ATOM 366 O TRP 45 38.050 27.605 13.258 1.00 99.99 O ATOM 367 CB TRP 45 37.366 25.257 11.381 1.00 99.99 C ATOM 368 CG TRP 45 38.542 24.526 11.944 1.00 99.99 C ATOM 369 CD1 TRP 45 38.882 24.420 13.249 1.00 99.99 C ATOM 370 CD2 TRP 45 39.640 23.853 11.259 1.00 99.99 C ATOM 371 NE1 TRP 45 40.077 23.740 13.378 1.00 99.99 N ATOM 372 CE2 TRP 45 40.587 23.314 12.168 1.00 99.99 C ATOM 373 CE3 TRP 45 39.869 23.594 9.898 1.00 99.99 C ATOM 374 CZ2 TRP 45 41.632 22.505 11.708 1.00 99.99 C ATOM 375 CZ3 TRP 45 40.933 22.832 9.400 1.00 99.99 C ATOM 376 CH2 TRP 45 41.843 22.325 10.336 1.00 99.99 H ATOM 377 N VAL 46 35.936 27.944 12.505 1.00 99.99 N ATOM 378 CA VAL 46 35.452 28.758 13.601 1.00 99.99 C ATOM 379 C VAL 46 34.000 28.442 13.925 1.00 99.99 C ATOM 380 O VAL 46 33.149 28.496 13.040 1.00 99.99 O ATOM 381 CB VAL 46 35.618 30.236 13.255 1.00 99.99 C ATOM 382 CG1 VAL 46 34.923 31.218 14.193 1.00 99.99 C ATOM 383 CG2 VAL 46 37.035 30.791 13.152 1.00 99.99 C ATOM 384 N PRO 47 33.659 28.265 15.203 1.00 99.99 N ATOM 385 CA PRO 47 32.273 28.182 15.619 1.00 99.99 C ATOM 386 C PRO 47 31.605 29.549 15.602 1.00 99.99 C ATOM 387 O PRO 47 31.661 30.272 16.594 1.00 99.99 O ATOM 388 CB PRO 47 32.282 27.485 16.977 1.00 99.99 C ATOM 389 CG PRO 47 33.605 27.974 17.559 1.00 99.99 C ATOM 390 CD PRO 47 34.519 27.996 16.337 1.00 99.99 C ATOM 391 N VAL 48 30.993 29.974 14.494 1.00 99.99 N ATOM 392 CA VAL 48 30.276 31.223 14.332 1.00 99.99 C ATOM 393 C VAL 48 28.866 31.065 14.885 1.00 99.99 C ATOM 394 O VAL 48 28.094 30.206 14.464 1.00 99.99 O ATOM 395 CB VAL 48 30.304 31.718 12.888 1.00 99.99 C ATOM 396 CG1 VAL 48 29.429 32.965 12.796 1.00 99.99 C ATOM 397 CG2 VAL 48 31.687 31.983 12.300 1.00 99.99 C ATOM 398 N ARG 49 28.647 31.752 16.008 1.00 99.99 N ATOM 399 CA ARG 49 27.404 31.764 16.752 1.00 99.99 C ATOM 400 C ARG 49 26.239 32.183 15.866 1.00 99.99 C ATOM 401 O ARG 49 26.218 33.270 15.293 1.00 99.99 O ATOM 402 CB ARG 49 27.503 32.753 17.908 1.00 99.99 C ATOM 403 CG ARG 49 28.246 32.080 19.059 1.00 99.99 C ATOM 404 CD ARG 49 27.448 31.171 19.989 1.00 99.99 C ATOM 405 NE ARG 49 26.388 31.877 20.708 1.00 99.99 N ATOM 406 CZ ARG 49 25.088 32.029 20.417 1.00 99.99 C ATOM 407 NH1 ARG 49 24.547 31.492 19.315 1.00 99.99 H ATOM 408 NH2 ARG 49 24.334 32.579 21.379 1.00 99.99 H ATOM 409 N ILE 50 25.112 31.476 15.983 1.00 99.99 N ATOM 410 CA ILE 50 23.946 31.679 15.146 1.00 99.99 C ATOM 411 C ILE 50 22.906 32.534 15.855 1.00 99.99 C ATOM 412 O ILE 50 22.590 32.281 17.015 1.00 99.99 O ATOM 413 CB ILE 50 23.397 30.306 14.769 1.00 99.99 C ATOM 414 CG1 ILE 50 24.361 29.209 14.326 1.00 99.99 C ATOM 415 CG2 ILE 50 22.225 30.420 13.799 1.00 99.99 C ATOM 416 CD1 ILE 50 23.705 27.844 14.131 1.00 99.99 C ATOM 417 N GLU 51 22.511 33.577 15.121 1.00 99.99 N ATOM 418 CA GLU 51 21.341 34.385 15.402 1.00 99.99 C ATOM 419 C GLU 51 20.781 34.948 14.105 1.00 99.99 C ATOM 420 O GLU 51 21.492 35.567 13.283 1.00 99.99 O ATOM 421 CB GLU 51 21.730 35.502 16.367 1.00 99.99 C ATOM 422 CG GLU 51 20.692 36.620 16.332 1.00 99.99 C ATOM 423 CD GLU 51 20.795 37.531 17.546 1.00 99.99 C ATOM 424 OE1 GLU 51 21.397 38.621 17.428 1.00 99.99 O ATOM 425 OE2 GLU 51 20.279 37.088 18.596 1.00 99.99 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 284 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 66.93 45.5 66 48.5 136 ARMSMC SECONDARY STRUCTURE . . 51.21 55.3 38 52.8 72 ARMSMC SURFACE . . . . . . . . 72.45 44.4 45 45.9 98 ARMSMC BURIED . . . . . . . . 53.20 47.6 21 55.3 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.14 35.5 31 50.8 61 ARMSSC1 RELIABLE SIDE CHAINS . 94.74 34.6 26 49.1 53 ARMSSC1 SECONDARY STRUCTURE . . 95.27 30.0 20 57.1 35 ARMSSC1 SURFACE . . . . . . . . 86.99 42.9 21 47.7 44 ARMSSC1 BURIED . . . . . . . . 107.60 20.0 10 58.8 17 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.07 43.5 23 50.0 46 ARMSSC2 RELIABLE SIDE CHAINS . 70.32 45.0 20 54.1 37 ARMSSC2 SECONDARY STRUCTURE . . 70.64 50.0 14 53.8 26 ARMSSC2 SURFACE . . . . . . . . 74.76 37.5 16 48.5 33 ARMSSC2 BURIED . . . . . . . . 57.96 57.1 7 53.8 13 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.69 42.9 7 43.8 16 ARMSSC3 RELIABLE SIDE CHAINS . 83.69 42.9 7 43.8 16 ARMSSC3 SECONDARY STRUCTURE . . 106.51 25.0 4 44.4 9 ARMSSC3 SURFACE . . . . . . . . 89.97 33.3 6 40.0 15 ARMSSC3 BURIED . . . . . . . . 21.32 100.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 112.06 25.0 4 44.4 9 ARMSSC4 RELIABLE SIDE CHAINS . 112.06 25.0 4 44.4 9 ARMSSC4 SECONDARY STRUCTURE . . 128.64 0.0 3 50.0 6 ARMSSC4 SURFACE . . . . . . . . 112.06 25.0 4 44.4 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.63 (Number of atoms: 34) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.63 34 49.3 69 CRMSCA CRN = ALL/NP . . . . . 0.1949 CRMSCA SECONDARY STRUCTURE . . 6.99 20 55.6 36 CRMSCA SURFACE . . . . . . . . 6.01 23 46.0 50 CRMSCA BURIED . . . . . . . . 7.76 11 57.9 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.65 167 49.6 337 CRMSMC SECONDARY STRUCTURE . . 6.95 100 55.9 179 CRMSMC SURFACE . . . . . . . . 6.07 113 46.3 244 CRMSMC BURIED . . . . . . . . 7.73 54 58.1 93 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.32 148 50.3 294 CRMSSC RELIABLE SIDE CHAINS . 8.46 130 50.4 258 CRMSSC SECONDARY STRUCTURE . . 8.23 96 53.3 180 CRMSSC SURFACE . . . . . . . . 7.98 103 47.7 216 CRMSSC BURIED . . . . . . . . 9.03 45 57.7 78 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.54 284 49.8 570 CRMSALL SECONDARY STRUCTURE . . 7.64 176 54.3 324 CRMSALL SURFACE . . . . . . . . 7.11 195 46.9 416 CRMSALL BURIED . . . . . . . . 8.39 89 57.8 154 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 94.002 0.888 0.895 34 49.3 69 ERRCA SECONDARY STRUCTURE . . 93.779 0.885 0.892 20 55.6 36 ERRCA SURFACE . . . . . . . . 94.256 0.892 0.898 23 46.0 50 ERRCA BURIED . . . . . . . . 93.471 0.880 0.889 11 57.9 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.960 0.888 0.894 167 49.6 337 ERRMC SECONDARY STRUCTURE . . 93.783 0.885 0.892 100 55.9 179 ERRMC SURFACE . . . . . . . . 94.205 0.891 0.897 113 46.3 244 ERRMC BURIED . . . . . . . . 93.446 0.880 0.889 54 58.1 93 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.617 0.865 0.875 148 50.3 294 ERRSC RELIABLE SIDE CHAINS . 92.526 0.864 0.874 130 50.4 258 ERRSC SECONDARY STRUCTURE . . 92.769 0.868 0.878 96 53.3 180 ERRSC SURFACE . . . . . . . . 92.734 0.866 0.876 103 47.7 216 ERRSC BURIED . . . . . . . . 92.350 0.862 0.873 45 57.7 78 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.286 0.876 0.885 284 49.8 570 ERRALL SECONDARY STRUCTURE . . 93.264 0.876 0.885 176 54.3 324 ERRALL SURFACE . . . . . . . . 93.463 0.879 0.887 195 46.9 416 ERRALL BURIED . . . . . . . . 92.899 0.871 0.881 89 57.8 154 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 4 12 31 34 69 DISTCA CA (P) 0.00 1.45 5.80 17.39 44.93 69 DISTCA CA (RMS) 0.00 1.52 2.39 3.90 5.57 DISTCA ALL (N) 0 8 24 95 244 284 570 DISTALL ALL (P) 0.00 1.40 4.21 16.67 42.81 570 DISTALL ALL (RMS) 0.00 1.59 2.31 3.98 5.83 DISTALL END of the results output