####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 54 ( 216), selected 54 , name T0624AL396_1-D1 # Molecule2: number of CA atoms 69 ( 570), selected 54 , name T0624-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0624AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 20 - 61 4.89 14.40 LONGEST_CONTINUOUS_SEGMENT: 28 35 - 62 4.38 15.62 LCS_AVERAGE: 33.60 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 6 - 15 1.99 15.85 LONGEST_CONTINUOUS_SEGMENT: 10 8 - 17 1.99 14.10 LONGEST_CONTINUOUS_SEGMENT: 10 44 - 53 1.78 11.32 LCS_AVERAGE: 11.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 45 - 51 0.93 12.19 LONGEST_CONTINUOUS_SEGMENT: 7 46 - 52 0.90 12.49 LCS_AVERAGE: 6.66 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 54 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 5 R 5 3 9 20 3 3 6 8 11 14 16 16 17 20 25 27 28 28 29 29 29 30 32 34 LCS_GDT E 6 E 6 3 10 20 3 3 6 8 11 14 16 16 17 25 26 27 28 28 29 30 30 31 33 35 LCS_GDT G 7 G 7 4 10 20 4 4 4 6 11 14 16 16 16 18 22 24 28 28 28 30 31 32 33 35 LCS_GDT T 8 T 8 4 10 20 4 4 5 8 11 14 16 16 17 18 19 22 27 28 30 32 34 36 37 38 LCS_GDT L 9 L 9 4 10 20 4 5 8 9 12 14 16 16 17 18 19 22 25 28 30 32 34 36 37 38 LCS_GDT F 10 F 10 4 10 20 4 4 5 7 10 14 16 16 17 18 19 22 25 28 30 32 34 36 37 38 LCS_GDT Y 11 Y 11 5 10 20 5 5 5 7 10 14 16 16 17 18 19 21 23 27 30 32 34 36 37 38 LCS_GDT D 12 D 12 5 10 20 5 5 6 8 11 14 16 16 17 18 19 21 23 25 30 32 34 36 37 38 LCS_GDT T 13 T 13 5 10 20 5 5 6 8 11 14 16 16 17 18 19 21 23 25 27 29 32 36 37 38 LCS_GDT E 14 E 14 5 10 20 5 5 6 8 11 14 16 16 17 18 19 20 21 23 27 29 32 33 36 37 LCS_GDT T 15 T 15 5 10 20 5 5 6 8 11 14 16 16 17 18 19 20 21 23 25 31 34 36 37 38 LCS_GDT G 16 G 16 4 10 20 4 4 5 7 9 12 16 16 17 18 19 21 22 27 30 32 34 36 37 38 LCS_GDT R 17 R 17 4 10 20 4 4 6 8 11 14 16 16 17 18 19 21 25 28 30 32 34 36 37 38 LCS_GDT Y 18 Y 18 3 8 20 3 3 5 6 11 14 16 16 17 18 19 22 25 28 30 32 34 36 37 38 LCS_GDT D 19 D 19 3 7 20 3 5 8 9 12 13 13 15 17 18 19 22 25 28 30 32 34 36 37 38 LCS_GDT I 20 I 20 3 3 28 0 3 5 7 9 9 12 15 16 17 19 22 25 28 29 31 33 35 36 38 LCS_GDT E 35 E 35 3 7 28 3 3 3 8 13 14 17 21 24 25 26 27 28 28 29 30 31 33 33 35 LCS_GDT C 36 C 36 5 7 28 4 7 9 11 13 14 17 21 24 25 26 27 28 28 29 30 31 33 33 35 LCS_GDT F 37 F 37 5 7 28 4 7 9 11 13 14 17 21 24 25 26 27 28 28 29 30 30 33 35 36 LCS_GDT D 38 D 38 5 7 28 3 5 9 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT V 39 V 39 5 7 28 3 7 9 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT K 40 K 40 5 7 28 3 4 5 7 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT V 41 V 41 4 7 28 3 4 4 5 10 14 16 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT K 42 K 42 4 6 28 3 4 4 4 7 11 15 19 24 25 26 27 28 28 29 30 31 34 36 38 LCS_GDT D 43 D 43 4 5 28 3 4 4 5 8 14 17 21 24 25 26 27 28 28 29 31 33 36 37 38 LCS_GDT V 44 V 44 6 10 28 3 5 8 9 12 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT W 45 W 45 7 10 28 3 5 8 9 12 13 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT V 46 V 46 7 10 28 3 5 7 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT P 47 P 47 7 10 28 3 5 7 8 12 13 13 15 21 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT V 48 V 48 7 10 28 4 7 9 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT R 49 R 49 7 10 28 4 5 7 8 11 13 14 18 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT I 50 I 50 7 10 28 4 5 9 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT E 51 E 51 7 10 28 4 5 8 9 12 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT M 52 M 52 7 10 28 4 5 8 9 12 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT G 53 G 53 5 10 28 3 5 8 9 12 13 14 18 21 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT D 54 D 54 4 7 28 3 4 4 6 8 12 15 19 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT D 55 D 55 6 7 28 3 4 6 6 9 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT W 56 W 56 6 7 28 3 5 6 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT Y 57 Y 57 6 7 28 3 5 7 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT L 58 L 58 6 7 28 3 7 9 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT V 59 V 59 6 7 28 4 7 9 11 13 14 16 21 24 25 26 27 28 28 30 32 34 36 37 38 LCS_GDT G 60 G 60 6 7 28 3 7 9 11 13 14 14 21 24 25 26 27 28 28 29 31 33 35 37 38 LCS_GDT L 61 L 61 4 5 28 3 4 4 6 7 10 11 16 20 23 24 27 28 28 29 30 30 32 33 35 LCS_GDT N 62 N 62 4 5 28 3 4 4 6 7 10 10 10 12 14 15 17 21 22 23 26 29 30 31 33 LCS_GDT V 63 V 63 4 5 14 3 4 4 6 7 10 10 11 15 18 19 19 23 25 27 29 30 33 36 37 LCS_GDT S 64 S 64 3 5 14 3 3 4 6 7 10 10 11 14 18 19 19 23 24 27 29 30 33 33 34 LCS_GDT R 65 R 65 3 5 14 3 3 4 4 5 7 10 11 14 18 19 19 23 25 27 29 30 33 36 37 LCS_GDT L 66 L 66 3 5 14 3 3 4 6 7 10 10 11 15 18 19 21 23 25 30 32 34 36 37 38 LCS_GDT D 67 D 67 4 5 14 3 3 5 7 9 11 12 15 17 18 19 21 23 27 30 32 34 36 37 38 LCS_GDT G 68 G 68 4 5 14 3 5 8 9 12 13 13 15 17 18 19 22 25 28 30 32 34 36 37 38 LCS_GDT L 69 L 69 4 5 14 3 4 6 8 10 14 16 16 17 18 19 22 25 28 30 32 34 36 37 38 LCS_GDT R 70 R 70 4 5 14 3 4 4 6 8 13 16 16 17 18 19 20 21 23 25 27 30 31 35 36 LCS_GDT R 72 R 72 0 5 14 0 0 2 2 5 8 10 15 16 18 19 20 21 23 25 26 28 30 32 34 LCS_GDT M 73 M 73 0 5 14 0 0 2 2 5 7 8 8 9 11 14 16 18 22 23 26 26 27 30 32 LCS_AVERAGE LCS_A: 17.14 ( 6.66 11.16 33.60 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 9 11 13 14 17 21 24 25 26 27 28 28 30 32 34 36 37 38 GDT PERCENT_AT 7.25 10.14 13.04 15.94 18.84 20.29 24.64 30.43 34.78 36.23 37.68 39.13 40.58 40.58 43.48 46.38 49.28 52.17 53.62 55.07 GDT RMS_LOCAL 0.17 0.56 0.95 1.30 1.55 1.65 2.62 2.92 3.21 3.30 3.50 3.62 3.82 3.77 5.69 5.85 6.07 6.32 6.42 6.56 GDT RMS_ALL_AT 13.01 15.76 15.59 15.44 15.32 15.06 15.37 15.25 15.35 15.42 15.49 15.23 15.67 15.32 10.70 10.56 10.57 10.65 10.66 10.73 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 5 R 5 5.932 7 0.378 0.378 7.017 27.976 10.173 LGA E 6 E 6 6.291 5 0.034 0.034 9.373 12.381 5.503 LGA G 7 G 7 10.744 0 0.211 0.211 12.539 0.714 0.714 LGA T 8 T 8 14.892 3 0.065 0.065 15.455 0.000 0.000 LGA L 9 L 9 16.920 4 0.018 0.018 20.169 0.000 0.000 LGA F 10 F 10 21.421 7 0.171 0.171 22.860 0.000 0.000 LGA Y 11 Y 11 26.211 8 0.528 0.528 30.610 0.000 0.000 LGA D 12 D 12 29.926 4 0.007 0.007 30.857 0.000 0.000 LGA T 13 T 13 34.387 3 0.131 0.131 34.610 0.000 0.000 LGA E 14 E 14 36.356 5 0.095 0.095 36.356 0.000 0.000 LGA T 15 T 15 29.385 3 0.282 0.282 31.694 0.000 0.000 LGA G 16 G 16 24.249 0 0.366 0.366 26.184 0.000 0.000 LGA R 17 R 17 19.215 7 0.593 0.593 21.469 0.000 0.000 LGA Y 18 Y 18 21.035 8 0.125 0.125 21.035 0.000 0.000 LGA D 19 D 19 20.672 4 0.683 0.683 20.978 0.000 0.000 LGA I 20 I 20 18.208 4 0.126 0.126 19.027 0.000 0.000 LGA E 35 E 35 3.092 5 0.026 0.026 3.725 57.738 25.661 LGA C 36 C 36 2.267 2 0.112 0.112 2.270 68.810 45.873 LGA F 37 F 37 3.220 7 0.203 0.203 3.795 48.333 17.576 LGA D 38 D 38 2.593 4 0.129 0.129 2.685 59.048 29.524 LGA V 39 V 39 3.362 3 0.644 0.644 5.743 41.190 23.537 LGA K 40 K 40 2.297 5 0.116 0.116 3.614 59.405 26.402 LGA V 41 V 41 3.855 3 0.087 0.087 3.855 53.690 30.680 LGA K 42 K 42 4.620 5 0.468 0.468 6.894 28.333 12.593 LGA D 43 D 43 4.303 4 0.158 0.158 5.265 39.167 19.583 LGA V 44 V 44 2.249 3 0.663 0.663 5.067 51.429 29.388 LGA W 45 W 45 3.560 10 0.206 0.206 3.560 61.667 17.619 LGA V 46 V 46 1.333 3 0.008 0.008 1.420 81.429 46.531 LGA P 47 P 47 5.060 3 0.084 0.084 5.634 32.024 18.299 LGA V 48 V 48 1.960 3 0.179 0.179 4.533 52.857 30.204 LGA R 49 R 49 4.553 7 0.081 0.081 4.553 45.476 16.537 LGA I 50 I 50 0.684 4 0.008 0.008 3.895 67.857 33.929 LGA E 51 E 51 3.381 5 0.140 0.140 4.333 52.500 23.333 LGA M 52 M 52 3.343 4 0.480 0.480 5.433 39.881 19.940 LGA G 53 G 53 8.437 0 0.590 0.590 8.437 10.476 10.476 LGA D 54 D 54 5.900 4 0.114 0.114 6.912 30.357 15.179 LGA D 55 D 55 2.913 4 0.105 0.105 3.172 55.476 27.738 LGA W 56 W 56 2.479 10 0.104 0.104 3.447 57.262 16.361 LGA Y 57 Y 57 2.349 8 0.229 0.229 2.875 62.857 20.952 LGA L 58 L 58 2.169 4 0.068 0.068 2.685 62.976 31.488 LGA V 59 V 59 3.559 3 0.079 0.079 3.559 50.119 28.639 LGA G 60 G 60 3.694 0 0.640 0.640 3.750 54.167 54.167 LGA L 61 L 61 6.596 4 0.183 0.183 9.826 11.667 5.833 LGA N 62 N 62 13.526 4 0.179 0.179 14.806 0.000 0.000 LGA V 63 V 63 17.765 3 0.629 0.629 21.221 0.000 0.000 LGA S 64 S 64 24.210 2 0.062 0.062 25.812 0.000 0.000 LGA R 65 R 65 22.142 7 0.692 0.692 22.221 0.000 0.000 LGA L 66 L 66 18.921 4 0.672 0.672 20.480 0.000 0.000 LGA D 67 D 67 23.097 4 0.146 0.146 23.097 0.000 0.000 LGA G 68 G 68 20.981 0 0.623 0.623 22.107 0.000 0.000 LGA L 69 L 69 19.159 4 0.104 0.104 19.159 0.000 0.000 LGA R 70 R 70 18.731 7 0.049 0.049 19.270 0.000 0.000 LGA R 72 R 72 11.457 7 0.181 0.181 12.885 0.000 0.000 LGA M 73 M 73 11.586 4 0.047 0.047 12.026 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 54 216 216 100.00 451 216 47.89 69 SUMMARY(RMSD_GDC): 10.482 10.395 10.395 19.960 10.064 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 54 69 4.0 21 2.92 25.725 22.725 0.695 LGA_LOCAL RMSD: 2.922 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.246 Number of assigned atoms: 54 Std_ASGN_ATOMS RMSD: 10.482 Standard rmsd on all 54 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.916697 * X + 0.202859 * Y + 0.344260 * Z + 28.764391 Y_new = 0.002542 * X + 0.858570 * Y + -0.512690 * Z + 24.820694 Z_new = -0.399575 * X + 0.470856 * Y + 0.786533 * Z + 15.605940 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.002772 0.411053 0.539425 [DEG: 0.1589 23.5516 30.9068 ] ZXZ: 0.591326 0.665622 -0.703689 [DEG: 33.8805 38.1373 -40.3184 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0624AL396_1-D1 REMARK 2: T0624-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0624AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 54 69 4.0 21 2.92 22.725 10.48 REMARK ---------------------------------------------------------- MOLECULE T0624AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2jz2_A ATOM 17 N ARG 5 29.379 23.739 7.994 1.00 0.00 N ATOM 18 CA ARG 5 28.179 22.945 7.859 1.00 0.00 C ATOM 19 C ARG 5 27.969 22.030 9.049 1.00 0.00 C ATOM 20 O ARG 5 27.019 21.251 9.083 1.00 0.00 O ATOM 21 N GLU 6 28.874 22.114 10.019 1.00 0.00 N ATOM 22 CA GLU 6 28.766 21.326 11.237 1.00 0.00 C ATOM 23 C GLU 6 28.203 22.164 12.381 1.00 0.00 C ATOM 24 O GLU 6 28.518 23.352 12.513 1.00 0.00 O ATOM 25 N GLY 7 27.363 21.541 13.193 1.00 0.00 N ATOM 26 CA GLY 7 26.746 22.205 14.330 1.00 0.00 C ATOM 27 C GLY 7 27.697 22.210 15.528 1.00 0.00 C ATOM 28 O GLY 7 28.251 21.170 15.896 1.00 0.00 O ATOM 29 N THR 8 27.890 23.375 16.131 1.00 0.00 N ATOM 30 CA THR 8 28.823 23.510 17.237 1.00 0.00 C ATOM 31 C THR 8 28.203 24.268 18.402 1.00 0.00 C ATOM 32 O THR 8 27.301 25.085 18.222 1.00 0.00 O ATOM 33 N LEU 9 28.698 23.982 19.594 1.00 0.00 N ATOM 34 CA LEU 9 28.253 24.655 20.803 1.00 0.00 C ATOM 35 C LEU 9 29.414 25.424 21.429 1.00 0.00 C ATOM 36 O LEU 9 30.539 24.923 21.488 1.00 0.00 O ATOM 37 N PHE 10 29.139 26.644 21.874 1.00 0.00 N ATOM 38 CA PHE 10 30.161 27.484 22.483 1.00 0.00 C ATOM 39 C PHE 10 30.378 27.085 23.938 1.00 0.00 C ATOM 40 O PHE 10 29.474 27.208 24.770 1.00 0.00 O ATOM 41 N TYR 11 31.569 26.594 24.237 1.00 0.00 N ATOM 42 CA TYR 11 31.885 26.112 25.571 1.00 0.00 C ATOM 43 C TYR 11 32.785 27.079 26.335 1.00 0.00 C ATOM 44 O TYR 11 33.419 26.703 27.324 1.00 0.00 O ATOM 45 N ASP 12 32.836 28.324 25.881 1.00 0.00 N ATOM 46 CA ASP 12 33.574 29.360 26.592 1.00 0.00 C ATOM 47 C ASP 12 32.647 30.037 27.595 1.00 0.00 C ATOM 48 O ASP 12 31.680 30.700 27.217 1.00 0.00 O ATOM 49 N THR 13 32.948 29.853 28.874 1.00 0.00 N ATOM 50 CA THR 13 32.057 30.271 29.954 1.00 0.00 C ATOM 51 C THR 13 31.931 31.792 30.035 1.00 0.00 C ATOM 52 O THR 13 30.898 32.315 30.445 1.00 0.00 O ATOM 53 N GLU 14 32.969 32.499 29.613 1.00 0.00 N ATOM 54 CA GLU 14 32.996 33.956 29.732 1.00 0.00 C ATOM 55 C GLU 14 32.473 34.614 28.455 1.00 0.00 C ATOM 56 O GLU 14 32.777 35.767 28.157 1.00 0.00 O ATOM 57 N THR 15 31.668 33.886 27.696 1.00 0.00 N ATOM 58 CA THR 15 31.078 34.448 26.491 1.00 0.00 C ATOM 59 C THR 15 29.562 34.544 26.632 1.00 0.00 C ATOM 60 O THR 15 28.966 33.887 27.488 1.00 0.00 O ATOM 61 N GLY 16 28.948 35.374 25.802 1.00 0.00 N ATOM 62 CA GLY 16 27.506 35.558 25.819 1.00 0.00 C ATOM 63 C GLY 16 26.786 34.323 25.275 1.00 0.00 C ATOM 64 O GLY 16 25.689 33.982 25.724 1.00 0.00 O ATOM 65 N ARG 17 27.417 33.637 24.331 1.00 0.00 N ATOM 66 CA ARG 17 26.792 32.501 23.668 1.00 0.00 C ATOM 67 C ARG 17 27.212 31.177 24.292 1.00 0.00 C ATOM 68 O ARG 17 27.160 30.133 23.642 1.00 0.00 O ATOM 69 N TYR 18 27.595 31.215 25.558 1.00 0.00 N ATOM 70 CA TYR 18 27.931 29.999 26.282 1.00 0.00 C ATOM 71 C TYR 18 26.734 29.053 26.304 1.00 0.00 C ATOM 72 O TYR 18 25.611 29.473 26.587 1.00 0.00 O ATOM 73 N ASP 19 26.989 27.786 25.960 1.00 0.00 N ATOM 74 CA ASP 19 25.988 26.726 25.961 1.00 0.00 C ATOM 75 C ASP 19 25.086 26.802 24.725 1.00 0.00 C ATOM 76 O ASP 19 24.404 25.831 24.384 1.00 0.00 O ATOM 77 N ILE 20 25.090 27.944 24.051 1.00 0.00 N ATOM 78 CA ILE 20 24.280 28.127 22.859 1.00 0.00 C ATOM 79 C ILE 20 24.894 27.393 21.673 1.00 0.00 C ATOM 80 O ILE 20 26.094 27.105 21.658 1.00 0.00 O ATOM 81 N GLU 35 24.063 27.089 20.690 1.00 0.00 N ATOM 82 CA GLU 35 24.488 26.294 19.549 1.00 0.00 C ATOM 83 C GLU 35 24.401 27.102 18.263 1.00 0.00 C ATOM 84 O GLU 35 23.451 27.861 18.054 1.00 0.00 O ATOM 85 N CYS 36 25.395 26.933 17.410 1.00 0.00 N ATOM 86 CA CYS 36 25.418 27.629 16.146 1.00 0.00 C ATOM 87 C CYS 36 25.914 26.739 15.033 1.00 0.00 C ATOM 88 O CYS 36 26.246 25.573 15.264 1.00 0.00 O ATOM 89 N PHE 37 25.974 27.275 13.827 1.00 0.00 N ATOM 90 CA PHE 37 26.403 26.498 12.680 1.00 0.00 C ATOM 91 C PHE 37 27.655 27.110 12.066 1.00 0.00 C ATOM 92 O PHE 37 27.659 28.289 11.706 1.00 0.00 O ATOM 93 N ASP 38 28.717 26.316 11.968 1.00 0.00 N ATOM 94 CA ASP 38 29.950 26.762 11.328 1.00 0.00 C ATOM 95 C ASP 38 29.689 27.067 9.866 1.00 0.00 C ATOM 96 O ASP 38 29.310 26.187 9.097 1.00 0.00 O ATOM 97 N VAL 39 29.871 28.319 9.498 1.00 0.00 N ATOM 98 CA VAL 39 29.607 28.755 8.139 1.00 0.00 C ATOM 99 C VAL 39 30.849 28.630 7.280 1.00 0.00 C ATOM 100 O VAL 39 30.765 28.335 6.089 1.00 0.00 O ATOM 101 N LYS 40 31.997 28.847 7.896 1.00 0.00 N ATOM 102 CA LYS 40 33.248 28.876 7.181 1.00 0.00 C ATOM 103 C LYS 40 34.406 28.893 8.156 1.00 0.00 C ATOM 104 O LYS 40 34.264 29.320 9.304 1.00 0.00 O ATOM 105 N VAL 41 35.530 28.397 7.695 1.00 0.00 N ATOM 106 CA VAL 41 36.778 28.478 8.437 1.00 0.00 C ATOM 107 C VAL 41 37.480 29.786 8.092 1.00 0.00 C ATOM 108 O VAL 41 37.710 30.081 6.921 1.00 0.00 O ATOM 109 N LYS 42 37.793 30.573 9.104 1.00 0.00 N ATOM 110 CA LYS 42 38.414 31.868 8.890 1.00 0.00 C ATOM 111 C LYS 42 39.772 31.949 9.577 1.00 0.00 C ATOM 112 O LYS 42 39.859 32.162 10.787 1.00 0.00 O ATOM 113 N ASP 43 40.824 31.738 8.787 1.00 0.00 N ATOM 114 CA ASP 43 42.207 31.827 9.257 1.00 0.00 C ATOM 115 C ASP 43 42.463 30.936 10.468 1.00 0.00 C ATOM 116 O ASP 43 43.193 31.309 11.388 1.00 0.00 O ATOM 117 N VAL 44 41.878 29.749 10.450 1.00 0.00 N ATOM 118 CA VAL 44 42.089 28.806 11.531 1.00 0.00 C ATOM 119 C VAL 44 40.975 28.836 12.553 1.00 0.00 C ATOM 120 O VAL 44 40.897 27.965 13.421 1.00 0.00 O ATOM 121 N TRP 45 40.122 29.848 12.460 1.00 0.00 N ATOM 122 CA TRP 45 38.967 29.967 13.324 1.00 0.00 C ATOM 123 C TRP 45 37.718 29.468 12.603 1.00 0.00 C ATOM 124 O TRP 45 37.777 29.099 11.431 1.00 0.00 O ATOM 125 N VAL 46 36.590 29.472 13.293 1.00 0.00 N ATOM 126 CA VAL 46 35.337 29.024 12.707 1.00 0.00 C ATOM 127 C VAL 46 34.252 30.074 12.895 1.00 0.00 C ATOM 128 O VAL 46 33.998 30.524 14.015 1.00 0.00 O ATOM 129 N PRO 47 33.621 30.469 11.798 1.00 0.00 N ATOM 130 CA PRO 47 32.568 31.468 11.841 1.00 0.00 C ATOM 131 C PRO 47 31.247 30.813 12.199 1.00 0.00 C ATOM 132 O PRO 47 30.668 30.082 11.394 1.00 0.00 O ATOM 133 N VAL 48 30.788 31.054 13.414 1.00 0.00 N ATOM 134 CA VAL 48 29.578 30.427 13.912 1.00 0.00 C ATOM 135 C VAL 48 28.372 31.322 13.683 1.00 0.00 C ATOM 136 O VAL 48 28.349 32.478 14.107 1.00 0.00 O ATOM 137 N ARG 49 27.378 30.785 12.999 1.00 0.00 N ATOM 138 CA ARG 49 26.146 31.508 12.754 1.00 0.00 C ATOM 139 C ARG 49 25.075 31.082 13.739 1.00 0.00 C ATOM 140 O ARG 49 24.791 29.893 13.885 1.00 0.00 O ATOM 141 N ILE 50 24.498 32.055 14.414 1.00 0.00 N ATOM 142 CA ILE 50 23.346 31.811 15.263 1.00 0.00 C ATOM 143 C ILE 50 22.101 32.307 14.543 1.00 0.00 C ATOM 144 O ILE 50 22.116 33.385 13.951 1.00 0.00 O ATOM 145 N GLU 51 21.041 31.520 14.588 1.00 0.00 N ATOM 146 CA GLU 51 19.842 31.805 13.808 1.00 0.00 C ATOM 147 C GLU 51 18.599 31.456 14.625 1.00 0.00 C ATOM 148 O GLU 51 18.539 30.385 15.234 1.00 0.00 O ATOM 149 N MET 52 17.620 32.356 14.648 1.00 0.00 N ATOM 150 CA MET 52 16.409 32.146 15.445 1.00 0.00 C ATOM 151 C MET 52 15.148 32.359 14.600 1.00 0.00 C ATOM 152 O MET 52 14.067 32.622 15.123 1.00 0.00 O ATOM 153 N GLY 53 15.287 32.244 13.288 1.00 0.00 N ATOM 154 CA GLY 53 14.134 32.324 12.411 1.00 0.00 C ATOM 155 C GLY 53 13.953 33.696 11.797 1.00 0.00 C ATOM 156 O GLY 53 12.932 33.959 11.159 1.00 0.00 O ATOM 157 N ASP 54 14.952 34.554 11.983 1.00 0.00 N ATOM 158 CA ASP 54 14.935 35.931 11.480 1.00 0.00 C ATOM 159 C ASP 54 16.095 36.696 12.089 1.00 0.00 C ATOM 160 O ASP 54 16.825 37.405 11.400 1.00 0.00 O ATOM 161 N ASP 55 16.255 36.544 13.396 1.00 0.00 N ATOM 162 CA ASP 55 17.382 37.131 14.097 1.00 0.00 C ATOM 163 C ASP 55 18.613 36.267 13.910 1.00 0.00 C ATOM 164 O ASP 55 18.534 35.038 13.964 1.00 0.00 O ATOM 165 N TRP 56 19.740 36.916 13.695 1.00 0.00 N ATOM 166 CA TRP 56 20.994 36.213 13.484 1.00 0.00 C ATOM 167 C TRP 56 22.171 37.093 13.870 1.00 0.00 C ATOM 168 O TRP 56 22.032 38.311 14.019 1.00 0.00 O ATOM 169 N TYR 57 23.316 36.457 14.049 1.00 0.00 N ATOM 170 CA TYR 57 24.570 37.152 14.292 1.00 0.00 C ATOM 171 C TYR 57 25.731 36.188 14.095 1.00 0.00 C ATOM 172 O TYR 57 25.947 35.288 14.906 1.00 0.00 O ATOM 173 N LEU 58 26.450 36.357 12.997 1.00 0.00 N ATOM 174 CA LEU 58 27.608 35.526 12.707 1.00 0.00 C ATOM 175 C LEU 58 28.792 35.987 13.546 1.00 0.00 C ATOM 176 O LEU 58 29.222 37.138 13.446 1.00 0.00 O ATOM 177 N VAL 59 29.299 35.098 14.386 1.00 0.00 N ATOM 178 CA VAL 59 30.437 35.410 15.237 1.00 0.00 C ATOM 179 C VAL 59 31.511 34.345 15.075 1.00 0.00 C ATOM 180 O VAL 59 31.249 33.155 15.247 1.00 0.00 O ATOM 181 N GLY 60 32.711 34.770 14.727 1.00 0.00 N ATOM 182 CA GLY 60 33.812 33.850 14.539 1.00 0.00 C ATOM 183 C GLY 60 34.483 33.532 15.871 1.00 0.00 C ATOM 184 O GLY 60 34.849 34.429 16.632 1.00 0.00 O ATOM 185 N LEU 61 34.645 32.251 16.131 1.00 0.00 N ATOM 186 CA LEU 61 35.306 31.774 17.338 1.00 0.00 C ATOM 187 C LEU 61 36.449 30.857 16.950 1.00 0.00 C ATOM 188 O LEU 61 36.666 30.594 15.771 1.00 0.00 O ATOM 189 N ASN 62 37.173 30.361 17.934 1.00 0.00 N ATOM 190 CA ASN 62 38.223 29.395 17.674 1.00 0.00 C ATOM 191 C ASN 62 37.628 27.996 17.670 1.00 0.00 C ATOM 192 O ASN 62 36.533 27.779 18.183 1.00 0.00 O ATOM 193 N VAL 63 38.363 27.052 17.116 1.00 0.00 N ATOM 194 CA VAL 63 37.966 25.658 17.141 1.00 0.00 C ATOM 195 C VAL 63 38.074 25.146 18.564 1.00 0.00 C ATOM 196 O VAL 63 37.312 24.285 18.996 1.00 0.00 O ATOM 197 N SER 64 39.027 25.715 19.292 1.00 0.00 N ATOM 198 CA SER 64 39.212 25.413 20.698 1.00 0.00 C ATOM 199 C SER 64 38.038 25.937 21.514 1.00 0.00 C ATOM 200 O SER 64 37.773 25.459 22.616 1.00 0.00 O ATOM 201 N ARG 65 37.318 26.906 20.958 1.00 0.00 N ATOM 202 CA ARG 65 36.228 27.541 21.700 1.00 0.00 C ATOM 203 C ARG 65 34.919 26.786 21.511 1.00 0.00 C ATOM 204 O ARG 65 33.922 27.081 22.175 1.00 0.00 O ATOM 205 N LEU 66 34.924 25.814 20.614 1.00 0.00 N ATOM 206 CA LEU 66 33.708 25.122 20.238 1.00 0.00 C ATOM 207 C LEU 66 33.821 23.621 20.465 1.00 0.00 C ATOM 208 O LEU 66 34.923 23.067 20.511 1.00 0.00 O ATOM 209 N ASP 67 32.676 22.976 20.620 1.00 0.00 N ATOM 210 CA ASP 67 32.598 21.525 20.577 1.00 0.00 C ATOM 211 C ASP 67 31.503 21.114 19.605 1.00 0.00 C ATOM 212 O ASP 67 30.504 21.823 19.451 1.00 0.00 O ATOM 213 N GLY 68 31.694 19.988 18.938 1.00 0.00 N ATOM 214 CA GLY 68 30.759 19.542 17.919 1.00 0.00 C ATOM 215 C GLY 68 29.531 18.900 18.545 1.00 0.00 C ATOM 216 O GLY 68 29.644 18.055 19.433 1.00 0.00 O ATOM 217 N LEU 69 28.358 19.302 18.081 1.00 0.00 N ATOM 218 CA LEU 69 27.113 18.732 18.567 1.00 0.00 C ATOM 219 C LEU 69 26.697 17.587 17.647 1.00 0.00 C ATOM 220 O LEU 69 27.337 17.345 16.621 1.00 0.00 O ATOM 221 N ARG 70 25.642 16.880 18.008 1.00 0.00 N ATOM 222 CA ARG 70 25.169 15.758 17.217 1.00 0.00 C ATOM 223 C ARG 70 24.150 16.222 16.182 1.00 0.00 C ATOM 224 O ARG 70 23.260 17.014 16.490 1.00 0.00 O ATOM 225 N ARG 72 24.288 15.750 14.932 1.00 0.00 N ATOM 226 CA ARG 72 23.336 16.051 13.856 1.00 0.00 C ATOM 227 C ARG 72 22.044 15.255 14.003 1.00 0.00 C ATOM 228 O ARG 72 21.795 14.643 15.044 1.00 0.00 O ATOM 229 N MET 73 21.223 15.269 12.965 1.00 0.00 N ATOM 230 CA MET 73 19.982 14.506 12.968 1.00 0.00 C ATOM 231 C MET 73 20.310 13.015 12.969 1.00 0.00 C ATOM 232 O MET 73 21.354 12.600 12.460 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 216 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.13 42.2 102 75.0 136 ARMSMC SECONDARY STRUCTURE . . 62.45 47.5 61 84.7 72 ARMSMC SURFACE . . . . . . . . 79.65 41.7 72 73.5 98 ARMSMC BURIED . . . . . . . . 70.71 43.3 30 78.9 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 53 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 35 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.48 (Number of atoms: 54) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.48 54 78.3 69 CRMSCA CRN = ALL/NP . . . . . 0.1941 CRMSCA SECONDARY STRUCTURE . . 8.24 32 88.9 36 CRMSCA SURFACE . . . . . . . . 11.29 38 76.0 50 CRMSCA BURIED . . . . . . . . 8.24 16 84.2 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.40 216 64.1 337 CRMSMC SECONDARY STRUCTURE . . 8.31 128 71.5 179 CRMSMC SURFACE . . . . . . . . 11.24 152 62.3 244 CRMSMC BURIED . . . . . . . . 8.06 64 68.8 93 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 294 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 258 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 180 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 216 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 78 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.40 216 37.9 570 CRMSALL SECONDARY STRUCTURE . . 8.31 128 39.5 324 CRMSALL SURFACE . . . . . . . . 11.24 152 36.5 416 CRMSALL BURIED . . . . . . . . 8.06 64 41.6 154 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.161 1.000 0.500 54 78.3 69 ERRCA SECONDARY STRUCTURE . . 7.336 1.000 0.500 32 88.9 36 ERRCA SURFACE . . . . . . . . 9.896 1.000 0.500 38 76.0 50 ERRCA BURIED . . . . . . . . 7.414 1.000 0.500 16 84.2 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.027 1.000 0.500 216 64.1 337 ERRMC SECONDARY STRUCTURE . . 7.313 1.000 0.500 128 71.5 179 ERRMC SURFACE . . . . . . . . 9.755 1.000 0.500 152 62.3 244 ERRMC BURIED . . . . . . . . 7.299 1.000 0.500 64 68.8 93 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 294 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 258 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 180 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 216 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 78 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.027 1.000 0.500 216 37.9 570 ERRALL SECONDARY STRUCTURE . . 7.313 1.000 0.500 128 39.5 324 ERRALL SURFACE . . . . . . . . 9.755 1.000 0.500 152 36.5 416 ERRALL BURIED . . . . . . . . 7.299 1.000 0.500 64 41.6 154 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 10 37 54 69 DISTCA CA (P) 0.00 0.00 4.35 14.49 53.62 69 DISTCA CA (RMS) 0.00 0.00 2.61 3.72 6.59 DISTCA ALL (N) 0 6 13 46 145 216 570 DISTALL ALL (P) 0.00 1.05 2.28 8.07 25.44 570 DISTALL ALL (RMS) 0.00 1.66 2.28 3.71 6.46 DISTALL END of the results output