####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 88 ( 352), selected 88 , name T0622AL285_1-D1 # Molecule2: number of CA atoms 122 ( 956), selected 88 , name T0622-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0622AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 88 2 - 93 2.08 2.08 LCS_AVERAGE: 72.13 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 68 22 - 93 1.91 2.16 LCS_AVERAGE: 55.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 31 - 49 0.99 3.50 LCS_AVERAGE: 12.67 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 88 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 2 K 2 18 67 88 9 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 3 K 3 18 67 88 9 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT V 4 V 4 18 67 88 12 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 5 L 5 18 67 88 11 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 6 I 6 18 67 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Y 7 Y 7 18 67 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT G 8 G 8 18 67 88 9 28 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT A 9 A 9 18 67 88 9 28 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT G 10 G 10 18 67 88 13 28 51 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT S 11 S 11 18 67 88 13 28 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT A 12 A 12 18 67 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT G 13 G 13 18 67 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 14 L 14 18 67 88 13 20 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Q 15 Q 15 18 67 88 13 27 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 16 L 16 18 67 88 13 27 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT A 17 A 17 18 67 88 13 26 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT N 18 N 18 18 67 88 13 24 44 61 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT M 19 M 19 18 67 88 13 21 44 61 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 20 L 20 4 67 88 3 3 4 7 12 27 47 72 85 86 87 88 88 88 88 88 88 88 88 88 LCS_GDT R 21 R 21 4 67 88 3 3 13 16 34 46 62 78 83 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Q 22 Q 22 4 68 88 3 3 4 10 49 68 79 83 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT G 23 G 23 11 68 88 11 27 49 66 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 24 K 24 11 68 88 3 19 46 60 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT E 25 E 25 11 68 88 5 12 42 60 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT F 26 F 26 18 68 88 6 26 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT H 27 H 27 18 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT P 28 P 28 18 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 29 I 29 18 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT A 30 A 30 18 68 88 5 19 45 68 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT F 31 F 31 19 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 32 I 32 19 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT D 33 D 33 19 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT D 34 D 34 19 68 88 12 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT D 35 D 35 19 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT R 36 R 36 19 68 88 9 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 37 K 37 19 68 88 9 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 38 K 38 19 68 88 9 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT H 39 H 39 19 68 88 5 27 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 40 K 40 19 68 88 5 25 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT T 41 T 41 19 68 88 7 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT T 42 T 42 19 68 88 9 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT M 43 M 43 19 68 88 11 29 52 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Q 44 Q 44 19 68 88 4 25 49 65 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT G 45 G 45 19 68 88 3 4 8 46 65 80 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 46 I 46 19 68 88 7 26 50 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT T 47 T 47 19 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 48 I 48 19 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Y 49 Y 49 19 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT R 50 R 50 17 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT P 51 P 51 17 68 88 7 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 52 K 52 17 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Y 53 Y 53 17 68 88 13 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 54 L 54 17 68 88 13 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT E 55 E 55 17 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT R 56 R 56 17 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 57 L 57 17 68 88 11 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 58 I 58 17 68 88 9 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 59 K 59 14 68 88 3 17 38 60 73 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT H 61 H 61 3 68 88 3 3 6 14 29 49 71 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT C 62 C 62 9 68 88 7 10 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 63 I 63 9 68 88 7 27 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT S 64 S 64 9 68 88 9 28 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT T 65 T 65 9 68 88 10 28 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT V 66 V 66 9 68 88 9 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 67 L 67 9 68 88 7 29 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 68 L 68 9 68 88 12 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT A 69 A 69 9 68 88 4 28 49 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT V 70 V 70 9 68 88 3 14 42 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT P 71 P 71 9 68 88 3 8 17 34 46 62 76 83 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Q 75 Q 75 8 68 88 4 6 24 51 72 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT V 76 V 76 13 68 88 4 4 38 51 69 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT Q 77 Q 77 16 68 88 6 26 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 78 K 78 16 68 88 11 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 79 K 79 16 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT V 80 V 80 16 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 81 I 81 16 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT I 82 I 82 16 68 88 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT E 83 E 83 16 68 88 11 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT S 84 S 84 16 68 88 10 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 85 L 85 16 68 88 10 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT A 86 A 86 16 68 88 10 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT K 87 K 87 16 68 88 10 24 51 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 88 L 88 16 68 88 5 19 45 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT H 89 H 89 16 68 88 5 17 45 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT V 90 V 90 16 68 88 3 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT E 91 E 91 16 68 88 5 19 46 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT V 92 V 92 16 68 88 3 10 15 34 70 78 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_GDT L 93 L 93 3 68 88 5 25 47 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 LCS_AVERAGE LCS_A: 46.78 ( 12.67 55.55 72.13 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 30 53 70 74 81 83 84 85 87 87 88 88 88 88 88 88 88 88 88 GDT PERCENT_AT 10.66 24.59 43.44 57.38 60.66 66.39 68.03 68.85 69.67 71.31 71.31 72.13 72.13 72.13 72.13 72.13 72.13 72.13 72.13 72.13 GDT RMS_LOCAL 0.32 0.73 1.06 1.32 1.40 1.62 1.70 1.79 1.84 2.01 2.00 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 GDT RMS_ALL_AT 3.53 2.26 2.11 2.11 2.10 2.10 2.10 2.09 2.09 2.08 2.09 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 2.08 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 2 K 2 1.072 5 0.062 0.062 1.385 85.952 38.201 LGA K 3 K 3 1.070 5 0.038 0.038 1.230 83.690 37.196 LGA V 4 V 4 1.035 3 0.023 0.023 1.035 90.595 51.769 LGA L 5 L 5 1.161 4 0.044 0.044 1.500 81.548 40.774 LGA I 6 I 6 0.727 4 0.072 0.072 0.734 92.857 46.429 LGA Y 7 Y 7 0.509 8 0.041 0.041 1.398 85.952 28.651 LGA G 8 G 8 1.570 0 0.117 0.117 2.305 72.976 72.976 LGA A 9 A 9 1.383 1 0.094 0.094 1.692 77.143 61.714 LGA G 10 G 10 1.971 0 0.091 0.091 1.971 72.857 72.857 LGA S 11 S 11 2.266 2 0.116 0.116 2.266 68.810 45.873 LGA A 12 A 12 0.963 1 0.020 0.020 1.446 88.214 70.571 LGA G 13 G 13 1.275 0 0.052 0.052 1.569 77.143 77.143 LGA L 14 L 14 2.173 4 0.028 0.028 2.439 66.786 33.393 LGA Q 15 Q 15 2.180 5 0.015 0.015 2.395 64.762 28.783 LGA L 16 L 16 1.675 4 0.075 0.075 1.998 72.857 36.429 LGA A 17 A 17 2.178 1 0.029 0.029 2.852 62.976 50.381 LGA N 18 N 18 2.894 4 0.194 0.194 3.840 53.810 26.905 LGA M 19 M 19 3.024 4 0.554 0.554 3.180 51.786 25.893 LGA L 20 L 20 5.505 4 0.380 0.380 5.505 27.619 13.810 LGA R 21 R 21 6.013 7 0.278 0.278 7.052 21.190 7.706 LGA Q 22 Q 22 5.039 5 0.060 0.060 5.792 32.024 14.233 LGA G 23 G 23 2.051 0 0.051 0.051 2.131 68.810 68.810 LGA K 24 K 24 2.624 5 0.157 0.157 3.234 57.262 25.450 LGA E 25 E 25 2.817 5 0.129 0.129 2.817 65.000 28.889 LGA F 26 F 26 1.269 7 0.162 0.162 1.891 83.810 30.476 LGA H 27 H 27 0.999 6 0.035 0.035 1.014 88.214 35.286 LGA P 28 P 28 0.838 3 0.020 0.020 1.346 88.214 50.408 LGA I 29 I 29 0.996 4 0.243 0.243 2.857 77.738 38.869 LGA A 30 A 30 1.957 1 0.104 0.104 1.957 81.548 65.238 LGA F 31 F 31 0.466 7 0.109 0.109 1.186 95.357 34.675 LGA I 32 I 32 0.418 4 0.076 0.076 0.418 100.000 50.000 LGA D 33 D 33 0.542 4 0.123 0.123 0.897 92.857 46.429 LGA D 34 D 34 0.975 4 0.014 0.014 0.975 90.476 45.238 LGA D 35 D 35 0.492 4 0.081 0.081 0.636 97.619 48.810 LGA R 36 R 36 1.208 7 0.045 0.045 1.649 81.548 29.654 LGA K 37 K 37 1.500 5 0.027 0.027 2.174 75.119 33.386 LGA K 38 K 38 1.593 5 0.147 0.147 1.634 75.000 33.333 LGA H 39 H 39 1.645 6 0.021 0.021 1.774 72.857 29.143 LGA K 40 K 40 1.955 5 0.137 0.137 2.050 70.833 31.481 LGA T 41 T 41 1.877 3 0.180 0.180 1.877 75.000 42.857 LGA T 42 T 42 0.728 3 0.067 0.067 1.100 88.214 50.408 LGA M 43 M 43 1.438 4 0.197 0.197 2.090 77.262 38.631 LGA Q 44 Q 44 2.081 5 0.402 0.402 2.764 60.952 27.090 LGA G 45 G 45 3.594 0 0.096 0.096 3.594 50.119 50.119 LGA I 46 I 46 1.444 4 0.245 0.245 1.585 79.405 39.702 LGA T 47 T 47 0.449 3 0.060 0.060 0.969 95.238 54.422 LGA I 48 I 48 0.354 4 0.055 0.055 0.634 97.619 48.810 LGA Y 49 Y 49 0.635 8 0.047 0.047 0.635 90.476 30.159 LGA R 50 R 50 0.725 7 0.085 0.085 0.769 92.857 33.766 LGA P 51 P 51 1.094 3 0.032 0.032 1.167 83.690 47.823 LGA K 52 K 52 1.393 5 0.074 0.074 1.438 81.429 36.190 LGA Y 53 Y 53 1.015 8 0.013 0.013 1.158 85.952 28.651 LGA L 54 L 54 0.602 4 0.011 0.011 0.780 90.476 45.238 LGA E 55 E 55 1.025 5 0.149 0.149 1.644 81.548 36.243 LGA R 56 R 56 1.080 7 0.113 0.113 1.080 83.690 30.433 LGA L 57 L 57 1.125 4 0.112 0.112 1.219 81.429 40.714 LGA I 58 I 58 1.163 4 0.053 0.053 1.810 77.143 38.571 LGA K 59 K 59 3.066 5 0.592 0.592 3.477 57.381 25.503 LGA H 61 H 61 5.424 6 0.046 0.046 5.706 40.476 16.190 LGA C 62 C 62 1.981 2 0.430 0.430 2.991 66.905 44.603 LGA I 63 I 63 1.444 4 0.049 0.049 1.571 77.143 38.571 LGA S 64 S 64 1.811 2 0.197 0.197 1.811 72.857 48.571 LGA T 65 T 65 1.666 3 0.030 0.030 1.798 72.857 41.633 LGA V 66 V 66 1.481 3 0.022 0.022 1.608 77.143 44.082 LGA L 67 L 67 1.424 4 0.071 0.071 1.424 83.690 41.845 LGA L 68 L 68 0.889 4 0.084 0.084 2.052 79.643 39.821 LGA A 69 A 69 2.023 1 0.126 0.126 2.106 66.786 53.429 LGA V 70 V 70 2.464 3 0.483 0.483 2.670 67.024 38.299 LGA P 71 P 71 4.971 3 0.678 0.678 6.068 27.857 15.918 LGA Q 75 Q 75 2.942 5 0.055 0.055 3.639 57.619 25.608 LGA V 76 V 76 3.315 3 0.094 0.094 3.418 57.381 32.789 LGA Q 77 Q 77 1.175 5 0.192 0.192 1.881 83.810 37.249 LGA K 78 K 78 0.912 5 0.053 0.053 0.941 90.476 40.212 LGA K 79 K 79 0.854 5 0.018 0.018 0.912 90.476 40.212 LGA V 80 V 80 0.898 3 0.022 0.022 0.931 90.476 51.701 LGA I 81 I 81 0.744 4 0.045 0.045 0.934 90.476 45.238 LGA I 82 I 82 0.942 4 0.017 0.017 1.081 85.952 42.976 LGA E 83 E 83 1.220 5 0.035 0.035 1.384 81.429 36.190 LGA S 84 S 84 1.341 2 0.010 0.010 1.458 81.429 54.286 LGA L 85 L 85 1.170 4 0.089 0.089 1.439 81.429 40.714 LGA A 86 A 86 1.484 1 0.070 0.070 2.096 75.119 60.095 LGA K 87 K 87 1.888 5 0.188 0.188 1.927 72.857 32.381 LGA L 88 L 88 2.221 4 0.112 0.112 2.308 64.762 32.381 LGA H 89 H 89 2.440 6 0.183 0.183 2.440 70.952 28.381 LGA V 90 V 90 1.039 3 0.056 0.056 1.704 79.286 45.306 LGA E 91 E 91 2.356 5 0.684 0.684 4.395 60.119 26.720 LGA V 92 V 92 3.514 3 0.111 0.111 4.037 48.690 27.823 LGA L 93 L 93 2.040 4 0.165 0.165 3.658 59.405 29.702 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 88 352 352 100.00 702 352 50.14 122 SUMMARY(RMSD_GDC): 2.083 2.028 2.028 53.920 28.734 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 88 122 4.0 84 1.79 55.738 59.358 4.444 LGA_LOCAL RMSD: 1.790 Number of atoms: 84 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.094 Number of assigned atoms: 88 Std_ASGN_ATOMS RMSD: 2.083 Standard rmsd on all 88 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.181118 * X + -0.453535 * Y + -0.872641 * Z + 56.835781 Y_new = 0.792877 * X + 0.457624 * Y + -0.402402 * Z + -22.420912 Z_new = 0.581844 * X + -0.764779 * Y + 0.276713 * Z + 22.198610 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.795375 -0.620995 -1.223630 [DEG: 102.8674 -35.5804 -70.1088 ] ZXZ: -1.138724 1.290424 2.491215 [DEG: -65.2441 73.9359 142.7361 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0622AL285_1-D1 REMARK 2: T0622-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0622AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 88 122 4.0 84 1.79 59.358 2.08 REMARK ---------------------------------------------------------- MOLECULE T0622AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2dt5A ATOM 1 N LYS 2 37.435 3.871 24.999 1.00 0.00 N ATOM 2 CA LYS 2 36.319 3.124 25.579 1.00 0.00 C ATOM 3 C LYS 2 35.282 2.796 24.521 1.00 0.00 C ATOM 4 O LYS 2 34.976 3.608 23.651 1.00 0.00 O ATOM 5 N LYS 3 34.741 1.583 24.589 1.00 0.00 N ATOM 6 CA LYS 3 33.719 1.184 23.640 1.00 0.00 C ATOM 7 C LYS 3 32.361 1.485 24.247 1.00 0.00 C ATOM 8 O LYS 3 32.117 1.167 25.408 1.00 0.00 O ATOM 9 N VAL 4 31.492 2.137 23.485 1.00 0.00 N ATOM 10 CA VAL 4 30.164 2.474 24.009 1.00 0.00 C ATOM 11 C VAL 4 29.069 1.944 23.084 1.00 0.00 C ATOM 12 O VAL 4 29.296 1.579 21.931 1.00 0.00 O ATOM 13 N LEU 5 27.873 1.962 23.597 1.00 0.00 N ATOM 14 CA LEU 5 26.688 1.567 22.865 1.00 0.00 C ATOM 15 C LEU 5 25.551 2.415 23.386 1.00 0.00 C ATOM 16 O LEU 5 25.615 2.925 24.504 1.00 0.00 O ATOM 17 N ILE 6 24.516 2.540 22.575 1.00 0.00 N ATOM 18 CA ILE 6 23.324 3.255 22.984 1.00 0.00 C ATOM 19 C ILE 6 22.246 2.177 23.033 1.00 0.00 C ATOM 20 O ILE 6 22.125 1.383 22.102 1.00 0.00 O ATOM 21 N TYR 7 21.510 2.108 24.137 1.00 0.00 N ATOM 22 CA TYR 7 20.424 1.135 24.279 1.00 0.00 C ATOM 23 C TYR 7 19.116 1.923 24.376 1.00 0.00 C ATOM 24 O TYR 7 18.832 2.578 25.394 1.00 0.00 O ATOM 25 N GLY 8 18.327 1.853 23.308 1.00 0.00 N ATOM 26 CA GLY 8 17.076 2.592 23.246 1.00 0.00 C ATOM 27 C GLY 8 17.284 3.665 22.197 1.00 0.00 C ATOM 28 O GLY 8 17.606 4.820 22.517 1.00 0.00 O ATOM 29 N ALA 9 17.128 3.273 20.937 1.00 0.00 N ATOM 30 CA ALA 9 17.343 4.182 19.829 1.00 0.00 C ATOM 31 C ALA 9 16.095 4.945 19.441 1.00 0.00 C ATOM 32 O ALA 9 15.696 4.978 18.271 1.00 0.00 O ATOM 33 N GLY 10 15.472 5.564 20.440 1.00 0.00 N ATOM 34 CA GLY 10 14.290 6.350 20.171 1.00 0.00 C ATOM 35 C GLY 10 14.734 7.740 19.743 1.00 0.00 C ATOM 36 O GLY 10 15.759 7.904 19.078 1.00 0.00 O ATOM 37 N SER 11 13.973 8.749 20.134 1.00 0.00 N ATOM 38 CA SER 11 14.298 10.115 19.775 1.00 0.00 C ATOM 39 C SER 11 15.595 10.594 20.447 1.00 0.00 C ATOM 40 O SER 11 16.497 11.095 19.775 1.00 0.00 O ATOM 41 N ALA 12 15.725 10.396 21.759 1.00 0.00 N ATOM 42 CA ALA 12 16.940 10.829 22.442 1.00 0.00 C ATOM 43 C ALA 12 18.135 9.988 22.015 1.00 0.00 C ATOM 44 O ALA 12 19.205 10.513 21.757 1.00 0.00 O ATOM 45 N GLY 13 17.946 8.678 21.943 1.00 0.00 N ATOM 46 CA GLY 13 19.034 7.813 21.547 1.00 0.00 C ATOM 47 C GLY 13 19.529 8.135 20.140 1.00 0.00 C ATOM 48 O GLY 13 20.740 8.186 19.924 1.00 0.00 O ATOM 49 N LEU 14 18.617 8.342 19.187 1.00 0.00 N ATOM 50 CA LEU 14 19.027 8.646 17.814 1.00 0.00 C ATOM 51 C LEU 14 19.730 9.999 17.753 1.00 0.00 C ATOM 52 O LEU 14 20.696 10.161 17.018 1.00 0.00 O ATOM 53 N GLN 15 19.250 10.975 18.526 1.00 0.00 N ATOM 54 CA GLN 15 19.910 12.279 18.537 1.00 0.00 C ATOM 55 C GLN 15 21.332 12.143 19.094 1.00 0.00 C ATOM 56 O GLN 15 22.259 12.765 18.599 1.00 0.00 O ATOM 57 N LEU 16 21.519 11.307 20.109 1.00 0.00 N ATOM 58 CA LEU 16 22.853 11.147 20.684 1.00 0.00 C ATOM 59 C LEU 16 23.840 10.478 19.709 1.00 0.00 C ATOM 60 O LEU 16 25.038 10.776 19.714 1.00 0.00 O ATOM 61 N ALA 17 23.334 9.570 18.882 1.00 0.00 N ATOM 62 CA ALA 17 24.174 8.882 17.914 1.00 0.00 C ATOM 63 C ALA 17 24.808 9.872 16.941 1.00 0.00 C ATOM 64 O ALA 17 25.880 9.606 16.437 1.00 0.00 O ATOM 65 N ASN 18 24.134 10.995 16.681 1.00 0.00 N ATOM 66 CA ASN 18 24.639 12.035 15.773 1.00 0.00 C ATOM 67 C ASN 18 25.333 13.191 16.494 1.00 0.00 C ATOM 68 O ASN 18 25.851 14.096 15.844 1.00 0.00 O ATOM 69 N MET 19 25.335 13.181 17.824 1.00 0.00 N ATOM 70 CA MET 19 25.950 14.282 18.575 1.00 0.00 C ATOM 71 C MET 19 27.474 14.190 18.454 1.00 0.00 C ATOM 72 O MET 19 28.067 13.171 18.811 1.00 0.00 O ATOM 73 N LEU 20 28.129 15.263 17.962 1.00 0.00 N ATOM 74 CA LEU 20 29.594 15.247 17.762 1.00 0.00 C ATOM 75 C LEU 20 30.444 15.556 18.996 1.00 0.00 C ATOM 76 O LEU 20 31.557 16.072 18.868 1.00 0.00 O ATOM 77 N ARG 21 29.927 15.258 20.181 1.00 0.00 N ATOM 78 CA ARG 21 30.698 15.521 21.382 1.00 0.00 C ATOM 79 C ARG 21 31.307 14.343 22.116 1.00 0.00 C ATOM 80 O ARG 21 31.598 14.458 23.296 1.00 0.00 O ATOM 81 N GLN 22 31.518 13.212 21.461 1.00 0.00 N ATOM 82 CA GLN 22 32.103 12.079 22.167 1.00 0.00 C ATOM 83 C GLN 22 33.632 12.156 22.346 1.00 0.00 C ATOM 84 O GLN 22 34.179 11.706 23.361 1.00 0.00 O ATOM 85 N GLY 23 34.334 12.728 21.375 1.00 0.00 N ATOM 86 CA GLY 23 35.778 12.810 21.523 1.00 0.00 C ATOM 87 C GLY 23 36.412 11.499 21.115 1.00 0.00 C ATOM 88 O GLY 23 35.713 10.547 20.752 1.00 0.00 O ATOM 89 N LYS 24 37.734 11.421 21.204 1.00 0.00 N ATOM 90 CA LYS 24 38.438 10.214 20.786 1.00 0.00 C ATOM 91 C LYS 24 38.514 9.131 21.850 1.00 0.00 C ATOM 92 O LYS 24 38.750 7.966 21.546 1.00 0.00 O ATOM 93 N GLU 25 38.297 9.502 23.102 1.00 0.00 N ATOM 94 CA GLU 25 38.351 8.517 24.170 1.00 0.00 C ATOM 95 C GLU 25 37.104 7.634 24.246 1.00 0.00 C ATOM 96 O GLU 25 37.157 6.546 24.821 1.00 0.00 O ATOM 97 N PHE 26 35.995 8.079 23.652 1.00 0.00 N ATOM 98 CA PHE 26 34.752 7.297 23.717 1.00 0.00 C ATOM 99 C PHE 26 34.206 6.971 22.337 1.00 0.00 C ATOM 100 O PHE 26 33.746 7.844 21.619 1.00 0.00 O ATOM 101 N HIS 27 34.269 5.698 21.966 1.00 0.00 N ATOM 102 CA HIS 27 33.831 5.297 20.645 1.00 0.00 C ATOM 103 C HIS 27 32.566 4.434 20.613 1.00 0.00 C ATOM 104 O HIS 27 32.542 3.333 21.160 1.00 0.00 O ATOM 105 N PRO 28 31.525 4.928 19.958 1.00 0.00 N ATOM 106 CA PRO 28 30.275 4.172 19.838 1.00 0.00 C ATOM 107 C PRO 28 30.505 2.961 18.942 1.00 0.00 C ATOM 108 O PRO 28 30.966 3.112 17.817 1.00 0.00 O ATOM 109 N ILE 29 30.182 1.769 19.433 1.00 0.00 N ATOM 110 CA ILE 29 30.358 0.545 18.660 1.00 0.00 C ATOM 111 C ILE 29 29.104 -0.330 18.596 1.00 0.00 C ATOM 112 O ILE 29 29.172 -1.469 18.131 1.00 0.00 O ATOM 113 N ALA 30 27.975 0.185 19.073 1.00 0.00 N ATOM 114 CA ALA 30 26.742 -0.599 19.052 1.00 0.00 C ATOM 115 C ALA 30 25.509 0.252 19.316 1.00 0.00 C ATOM 116 O ALA 30 25.562 1.218 20.074 1.00 0.00 O ATOM 117 N PHE 31 24.397 -0.099 18.679 1.00 0.00 N ATOM 118 CA PHE 31 23.135 0.622 18.828 1.00 0.00 C ATOM 119 C PHE 31 22.069 -0.466 18.881 1.00 0.00 C ATOM 120 O PHE 31 21.938 -1.262 17.956 1.00 0.00 O ATOM 121 N ILE 32 21.314 -0.476 19.974 1.00 0.00 N ATOM 122 CA ILE 32 20.323 -1.494 20.221 1.00 0.00 C ATOM 123 C ILE 32 18.923 -0.986 20.516 1.00 0.00 C ATOM 124 O ILE 32 18.736 0.115 21.026 1.00 0.00 O ATOM 125 N ASP 33 17.936 -1.816 20.200 1.00 0.00 N ATOM 126 CA ASP 33 16.557 -1.448 20.438 1.00 0.00 C ATOM 127 C ASP 33 15.714 -2.719 20.427 1.00 0.00 C ATOM 128 O ASP 33 16.157 -3.764 19.947 1.00 0.00 O ATOM 129 N ASP 34 14.504 -2.639 20.966 1.00 0.00 N ATOM 130 CA ASP 34 13.632 -3.814 21.018 1.00 0.00 C ATOM 131 C ASP 34 12.573 -3.780 19.898 1.00 0.00 C ATOM 132 O ASP 34 11.902 -4.766 19.619 1.00 0.00 O ATOM 133 N ASP 35 12.447 -2.627 19.260 1.00 0.00 N ATOM 134 CA ASP 35 11.470 -2.407 18.209 1.00 0.00 C ATOM 135 C ASP 35 11.993 -2.924 16.872 1.00 0.00 C ATOM 136 O ASP 35 12.985 -2.411 16.355 1.00 0.00 O ATOM 137 N ARG 36 11.341 -3.955 16.296 1.00 0.00 N ATOM 138 CA ARG 36 11.823 -4.473 15.007 1.00 0.00 C ATOM 139 C ARG 36 11.737 -3.450 13.860 1.00 0.00 C ATOM 140 O ARG 36 12.431 -3.577 12.854 1.00 0.00 O ATOM 141 N LYS 37 10.898 -2.431 14.008 1.00 0.00 N ATOM 142 CA LYS 37 10.794 -1.395 12.976 1.00 0.00 C ATOM 143 C LYS 37 12.077 -0.550 12.975 1.00 0.00 C ATOM 144 O LYS 37 12.378 0.134 12.001 1.00 0.00 O ATOM 145 N LYS 38 12.834 -0.604 14.065 1.00 0.00 N ATOM 146 CA LYS 38 14.076 0.169 14.156 1.00 0.00 C ATOM 147 C LYS 38 15.304 -0.695 13.917 1.00 0.00 C ATOM 148 O LYS 38 16.311 -0.231 13.362 1.00 0.00 O ATOM 149 N HIS 39 15.237 -1.949 14.348 1.00 0.00 N ATOM 150 CA HIS 39 16.349 -2.860 14.150 1.00 0.00 C ATOM 151 C HIS 39 16.633 -2.969 12.642 1.00 0.00 C ATOM 152 O HIS 39 15.718 -3.176 11.844 1.00 0.00 O ATOM 153 N LYS 40 17.897 -2.788 12.258 1.00 0.00 N ATOM 154 CA LYS 40 18.270 -2.862 10.852 1.00 0.00 C ATOM 155 C LYS 40 18.451 -1.488 10.232 1.00 0.00 C ATOM 156 O LYS 40 18.943 -1.335 9.106 1.00 0.00 O ATOM 157 N THR 41 18.035 -0.468 10.958 1.00 0.00 N ATOM 158 CA THR 41 18.176 0.891 10.466 1.00 0.00 C ATOM 159 C THR 41 19.629 1.343 10.559 1.00 0.00 C ATOM 160 O THR 41 20.276 1.185 11.599 1.00 0.00 O ATOM 161 N THR 42 20.173 1.866 9.453 1.00 0.00 N ATOM 162 CA THR 42 21.560 2.319 9.537 1.00 0.00 C ATOM 163 C THR 42 21.574 3.632 10.294 1.00 0.00 C ATOM 164 O THR 42 20.597 4.383 10.252 1.00 0.00 O ATOM 165 N MET 43 22.671 3.885 11.003 1.00 0.00 N ATOM 166 CA MET 43 22.852 5.120 11.765 1.00 0.00 C ATOM 167 C MET 43 24.320 5.517 11.649 1.00 0.00 C ATOM 168 O MET 43 25.139 4.739 11.148 1.00 0.00 O ATOM 169 N GLN 44 24.661 6.719 12.105 1.00 0.00 N ATOM 170 CA GLN 44 26.038 7.158 12.018 1.00 0.00 C ATOM 171 C GLN 44 26.983 6.134 12.640 1.00 0.00 C ATOM 172 O GLN 44 26.870 5.805 13.819 1.00 0.00 O ATOM 173 N GLY 45 27.889 5.608 11.822 1.00 0.00 N ATOM 174 CA GLY 45 28.853 4.628 12.297 1.00 0.00 C ATOM 175 C GLY 45 28.331 3.237 12.613 1.00 0.00 C ATOM 176 O GLY 45 29.007 2.478 13.309 1.00 0.00 O ATOM 177 N ILE 46 27.141 2.876 12.134 1.00 0.00 N ATOM 178 CA ILE 46 26.666 1.534 12.430 1.00 0.00 C ATOM 179 C ILE 46 25.251 1.224 11.998 1.00 0.00 C ATOM 180 O ILE 46 24.700 1.885 11.123 1.00 0.00 O ATOM 181 N THR 47 24.655 0.225 12.643 1.00 0.00 N ATOM 182 CA THR 47 23.293 -0.196 12.328 1.00 0.00 C ATOM 183 C THR 47 22.595 -0.611 13.616 1.00 0.00 C ATOM 184 O THR 47 23.220 -1.160 14.520 1.00 0.00 O ATOM 185 N ILE 48 21.297 -0.359 13.709 1.00 0.00 N ATOM 186 CA ILE 48 20.588 -0.735 14.923 1.00 0.00 C ATOM 187 C ILE 48 20.394 -2.240 14.997 1.00 0.00 C ATOM 188 O ILE 48 19.876 -2.852 14.073 1.00 0.00 O ATOM 189 N TYR 49 20.853 -2.838 16.089 1.00 0.00 N ATOM 190 CA TYR 49 20.697 -4.271 16.294 1.00 0.00 C ATOM 191 C TYR 49 19.693 -4.513 17.406 1.00 0.00 C ATOM 192 O TYR 49 19.441 -3.636 18.245 1.00 0.00 O ATOM 193 N ARG 50 19.139 -5.717 17.430 1.00 0.00 N ATOM 194 CA ARG 50 18.169 -6.044 18.448 1.00 0.00 C ATOM 195 C ARG 50 18.847 -6.182 19.798 1.00 0.00 C ATOM 196 O ARG 50 19.931 -6.764 19.918 1.00 0.00 O ATOM 197 N PRO 51 18.190 -5.647 20.818 1.00 0.00 N ATOM 198 CA PRO 51 18.716 -5.671 22.163 1.00 0.00 C ATOM 199 C PRO 51 18.989 -7.103 22.649 1.00 0.00 C ATOM 200 O PRO 51 19.780 -7.308 23.568 1.00 0.00 O ATOM 201 N LYS 52 18.345 -8.098 22.050 1.00 0.00 N ATOM 202 CA LYS 52 18.603 -9.470 22.486 1.00 0.00 C ATOM 203 C LYS 52 20.035 -9.920 22.127 1.00 0.00 C ATOM 204 O LYS 52 20.487 -10.969 22.587 1.00 0.00 O ATOM 205 N TYR 53 20.750 -9.129 21.328 1.00 0.00 N ATOM 206 CA TYR 53 22.128 -9.481 20.935 1.00 0.00 C ATOM 207 C TYR 53 23.203 -8.963 21.862 1.00 0.00 C ATOM 208 O TYR 53 24.388 -9.219 21.638 1.00 0.00 O ATOM 209 N LEU 54 22.810 -8.227 22.897 1.00 0.00 N ATOM 210 CA LEU 54 23.809 -7.687 23.815 1.00 0.00 C ATOM 211 C LEU 54 24.877 -8.704 24.235 1.00 0.00 C ATOM 212 O LEU 54 26.071 -8.433 24.132 1.00 0.00 O ATOM 213 N GLU 55 24.462 -9.903 24.684 1.00 0.00 N ATOM 214 CA GLU 55 25.503 -10.847 25.097 1.00 0.00 C ATOM 215 C GLU 55 26.447 -11.295 23.995 1.00 0.00 C ATOM 216 O GLU 55 27.546 -11.761 24.275 1.00 0.00 O ATOM 217 N ARG 56 26.041 -11.136 22.746 1.00 0.00 N ATOM 218 CA ARG 56 26.917 -11.509 21.647 1.00 0.00 C ATOM 219 C ARG 56 27.747 -10.300 21.194 1.00 0.00 C ATOM 220 O ARG 56 28.660 -10.448 20.398 1.00 0.00 O ATOM 221 N LEU 57 27.435 -9.109 21.699 1.00 0.00 N ATOM 222 CA LEU 57 28.141 -7.904 21.255 1.00 0.00 C ATOM 223 C LEU 57 28.937 -7.117 22.271 1.00 0.00 C ATOM 224 O LEU 57 29.875 -6.406 21.915 1.00 0.00 O ATOM 225 N ILE 58 28.567 -7.227 23.535 1.00 0.00 N ATOM 226 CA ILE 58 29.238 -6.450 24.565 1.00 0.00 C ATOM 227 C ILE 58 30.602 -6.962 25.019 1.00 0.00 C ATOM 228 O ILE 58 31.578 -6.215 24.990 1.00 0.00 O ATOM 229 N LYS 59 30.690 -8.244 25.423 1.00 0.00 N ATOM 230 CA LYS 59 31.957 -8.817 25.888 1.00 0.00 C ATOM 231 C LYS 59 33.160 -8.428 25.035 1.00 0.00 C ATOM 232 O LYS 59 33.136 -8.585 23.815 1.00 0.00 O ATOM 233 N HIS 61 34.186 -7.894 25.701 1.00 0.00 N ATOM 234 CA HIS 61 35.414 -7.481 25.037 1.00 0.00 C ATOM 235 C HIS 61 35.325 -6.356 24.021 1.00 0.00 C ATOM 236 O HIS 61 36.329 -6.022 23.384 1.00 0.00 O ATOM 237 N CYS 62 34.151 -5.755 23.854 1.00 0.00 N ATOM 238 CA CYS 62 34.015 -4.678 22.869 1.00 0.00 C ATOM 239 C CYS 62 33.370 -3.401 23.393 1.00 0.00 C ATOM 240 O CYS 62 33.720 -2.288 22.966 1.00 0.00 O ATOM 241 N ILE 63 32.398 -3.571 24.282 1.00 0.00 N ATOM 242 CA ILE 63 31.661 -2.441 24.816 1.00 0.00 C ATOM 243 C ILE 63 31.667 -2.410 26.336 1.00 0.00 C ATOM 244 O ILE 63 31.197 -3.349 26.989 1.00 0.00 O ATOM 245 N SER 64 32.204 -1.323 26.890 1.00 0.00 N ATOM 246 CA SER 64 32.287 -1.170 28.337 1.00 0.00 C ATOM 247 C SER 64 31.229 -0.232 28.915 1.00 0.00 C ATOM 248 O SER 64 30.814 -0.402 30.059 1.00 0.00 O ATOM 249 N THR 65 30.797 0.751 28.133 1.00 0.00 N ATOM 250 CA THR 65 29.834 1.727 28.625 1.00 0.00 C ATOM 251 C THR 65 28.592 1.821 27.755 1.00 0.00 C ATOM 252 O THR 65 28.687 1.867 26.522 1.00 0.00 O ATOM 253 N VAL 66 27.428 1.869 28.396 1.00 0.00 N ATOM 254 CA VAL 66 26.182 1.985 27.657 1.00 0.00 C ATOM 255 C VAL 66 25.444 3.247 28.032 1.00 0.00 C ATOM 256 O VAL 66 25.395 3.613 29.209 1.00 0.00 O ATOM 257 N LEU 67 24.904 3.902 27.010 1.00 0.00 N ATOM 258 CA LEU 67 24.084 5.059 27.222 1.00 0.00 C ATOM 259 C LEU 67 22.657 4.486 27.286 1.00 0.00 C ATOM 260 O LEU 67 22.173 4.006 26.273 1.00 0.00 O ATOM 261 N LEU 68 21.976 4.549 28.435 1.00 0.00 N ATOM 262 CA LEU 68 20.623 3.986 28.549 1.00 0.00 C ATOM 263 C LEU 68 19.553 5.048 28.262 1.00 0.00 C ATOM 264 O LEU 68 19.333 5.952 29.076 1.00 0.00 O ATOM 265 N ALA 69 18.893 4.921 27.123 1.00 0.00 N ATOM 266 CA ALA 69 17.879 5.881 26.712 1.00 0.00 C ATOM 267 C ALA 69 16.543 5.214 26.367 1.00 0.00 C ATOM 268 O ALA 69 15.900 5.585 25.389 1.00 0.00 O ATOM 269 N VAL 70 16.134 4.243 27.180 1.00 0.00 N ATOM 270 CA VAL 70 14.845 3.577 26.989 1.00 0.00 C ATOM 271 C VAL 70 13.857 4.213 27.975 1.00 0.00 C ATOM 272 O VAL 70 14.268 4.911 28.895 1.00 0.00 O ATOM 273 N PRO 71 12.539 4.011 27.778 1.00 0.00 N ATOM 274 CA PRO 71 11.605 4.617 28.732 1.00 0.00 C ATOM 275 C PRO 71 11.853 4.042 30.119 1.00 0.00 C ATOM 276 O PRO 71 12.354 2.915 30.273 1.00 0.00 O ATOM 277 N GLN 75 11.490 4.826 31.125 1.00 0.00 N ATOM 278 CA GLN 75 11.683 4.436 32.505 1.00 0.00 C ATOM 279 C GLN 75 11.026 3.122 32.818 1.00 0.00 C ATOM 280 O GLN 75 11.515 2.372 33.652 1.00 0.00 O ATOM 281 N VAL 76 9.918 2.833 32.149 1.00 0.00 N ATOM 282 CA VAL 76 9.214 1.590 32.425 1.00 0.00 C ATOM 283 C VAL 76 10.076 0.364 32.200 1.00 0.00 C ATOM 284 O VAL 76 9.882 -0.659 32.857 1.00 0.00 O ATOM 285 N GLN 77 11.035 0.463 31.281 1.00 0.00 N ATOM 286 CA GLN 77 11.916 -0.670 30.959 1.00 0.00 C ATOM 287 C GLN 77 13.384 -0.490 31.370 1.00 0.00 C ATOM 288 O GLN 77 14.220 -1.373 31.136 1.00 0.00 O ATOM 289 N LYS 78 13.708 0.645 31.976 1.00 0.00 N ATOM 290 CA LYS 78 15.099 0.916 32.331 1.00 0.00 C ATOM 291 C LYS 78 15.793 -0.120 33.212 1.00 0.00 C ATOM 292 O LYS 78 16.919 -0.532 32.929 1.00 0.00 O ATOM 293 N LYS 79 15.135 -0.553 34.277 1.00 0.00 N ATOM 294 CA LYS 79 15.755 -1.524 35.160 1.00 0.00 C ATOM 295 C LYS 79 15.982 -2.848 34.428 1.00 0.00 C ATOM 296 O LYS 79 17.005 -3.521 34.610 1.00 0.00 O ATOM 297 N VAL 80 15.030 -3.210 33.579 1.00 0.00 N ATOM 298 CA VAL 80 15.133 -4.456 32.835 1.00 0.00 C ATOM 299 C VAL 80 16.290 -4.355 31.840 1.00 0.00 C ATOM 300 O VAL 80 17.104 -5.269 31.711 1.00 0.00 O ATOM 301 N ILE 81 16.356 -3.240 31.130 1.00 0.00 N ATOM 302 CA ILE 81 17.436 -3.032 30.167 1.00 0.00 C ATOM 303 C ILE 81 18.782 -3.055 30.900 1.00 0.00 C ATOM 304 O ILE 81 19.755 -3.594 30.393 1.00 0.00 O ATOM 305 N ILE 82 18.826 -2.492 32.106 1.00 0.00 N ATOM 306 CA ILE 82 20.067 -2.467 32.867 1.00 0.00 C ATOM 307 C ILE 82 20.482 -3.883 33.285 1.00 0.00 C ATOM 308 O ILE 82 21.663 -4.237 33.201 1.00 0.00 O ATOM 309 N GLU 83 19.515 -4.687 33.732 1.00 0.00 N ATOM 310 CA GLU 83 19.797 -6.064 34.131 1.00 0.00 C ATOM 311 C GLU 83 20.384 -6.813 32.919 1.00 0.00 C ATOM 312 O GLU 83 21.316 -7.604 33.062 1.00 0.00 O ATOM 313 N SER 84 19.841 -6.559 31.730 1.00 0.00 N ATOM 314 CA SER 84 20.359 -7.200 30.517 1.00 0.00 C ATOM 315 C SER 84 21.787 -6.713 30.213 1.00 0.00 C ATOM 316 O SER 84 22.637 -7.497 29.800 1.00 0.00 O ATOM 317 N LEU 85 22.038 -5.417 30.404 1.00 0.00 N ATOM 318 CA LEU 85 23.365 -4.849 30.173 1.00 0.00 C ATOM 319 C LEU 85 24.351 -5.484 31.149 1.00 0.00 C ATOM 320 O LEU 85 25.400 -5.973 30.745 1.00 0.00 O ATOM 321 N ALA 86 24.003 -5.481 32.430 1.00 0.00 N ATOM 322 CA ALA 86 24.841 -6.097 33.459 1.00 0.00 C ATOM 323 C ALA 86 25.117 -7.558 33.062 1.00 0.00 C ATOM 324 O ALA 86 26.262 -7.987 33.020 1.00 0.00 O ATOM 325 N LYS 87 24.073 -8.312 32.726 1.00 0.00 N ATOM 326 CA LYS 87 24.240 -9.708 32.320 1.00 0.00 C ATOM 327 C LYS 87 25.181 -9.839 31.120 1.00 0.00 C ATOM 328 O LYS 87 25.960 -10.786 31.046 1.00 0.00 O ATOM 329 N LEU 88 25.101 -8.894 30.182 1.00 0.00 N ATOM 330 CA LEU 88 25.943 -8.937 28.992 1.00 0.00 C ATOM 331 C LEU 88 27.392 -8.550 29.289 1.00 0.00 C ATOM 332 O LEU 88 28.257 -8.708 28.438 1.00 0.00 O ATOM 333 N HIS 89 27.645 -8.050 30.496 1.00 0.00 N ATOM 334 CA HIS 89 28.999 -7.680 30.875 1.00 0.00 C ATOM 335 C HIS 89 29.325 -6.195 30.851 1.00 0.00 C ATOM 336 O HIS 89 30.496 -5.814 30.856 1.00 0.00 O ATOM 337 N VAL 90 28.312 -5.340 30.840 1.00 0.00 N ATOM 338 CA VAL 90 28.594 -3.905 30.799 1.00 0.00 C ATOM 339 C VAL 90 29.395 -3.499 32.053 1.00 0.00 C ATOM 340 O VAL 90 29.301 -4.144 33.105 1.00 0.00 O ATOM 341 N GLU 91 30.190 -2.443 31.936 1.00 0.00 N ATOM 342 CA GLU 91 30.984 -1.971 33.071 1.00 0.00 C ATOM 343 C GLU 91 30.452 -0.641 33.606 1.00 0.00 C ATOM 344 O GLU 91 30.667 -0.282 34.757 1.00 0.00 O ATOM 345 N VAL 92 29.770 0.114 32.763 1.00 0.00 N ATOM 346 CA VAL 92 29.252 1.372 33.252 1.00 0.00 C ATOM 347 C VAL 92 28.024 1.772 32.491 1.00 0.00 C ATOM 348 O VAL 92 27.886 1.409 31.314 1.00 0.00 O ATOM 349 N LEU 93 27.136 2.524 33.143 1.00 0.00 N ATOM 350 CA LEU 93 25.926 2.980 32.477 1.00 0.00 C ATOM 351 C LEU 93 25.686 4.469 32.696 1.00 0.00 C ATOM 352 O LEU 93 25.592 4.931 33.822 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 352 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 38.19 77.6 170 70.2 242 ARMSMC SECONDARY STRUCTURE . . 32.70 83.8 111 92.5 120 ARMSMC SURFACE . . . . . . . . 45.50 72.8 92 61.3 150 ARMSMC BURIED . . . . . . . . 27.13 83.3 78 84.8 92 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 107 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 98 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 55 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 85 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 61 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 27 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.08 (Number of atoms: 88) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.08 88 72.1 122 CRMSCA CRN = ALL/NP . . . . . 0.0237 CRMSCA SECONDARY STRUCTURE . . 2.11 58 96.7 60 CRMSCA SURFACE . . . . . . . . 2.31 48 63.2 76 CRMSCA BURIED . . . . . . . . 1.78 40 87.0 46 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.03 352 58.5 602 CRMSMC SECONDARY STRUCTURE . . 2.05 232 77.6 299 CRMSMC SURFACE . . . . . . . . 2.20 192 51.3 374 CRMSMC BURIED . . . . . . . . 1.80 160 70.2 228 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 468 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 382 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 252 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 306 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 162 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.03 352 36.8 956 CRMSALL SECONDARY STRUCTURE . . 2.05 232 47.2 492 CRMSALL SURFACE . . . . . . . . 2.20 192 31.5 610 CRMSALL BURIED . . . . . . . . 1.80 160 46.2 346 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.728 1.000 0.500 88 72.1 122 ERRCA SECONDARY STRUCTURE . . 1.687 1.000 0.500 58 96.7 60 ERRCA SURFACE . . . . . . . . 1.976 1.000 0.500 48 63.2 76 ERRCA BURIED . . . . . . . . 1.431 1.000 0.500 40 87.0 46 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.701 1.000 0.500 352 58.5 602 ERRMC SECONDARY STRUCTURE . . 1.667 1.000 0.500 232 77.6 299 ERRMC SURFACE . . . . . . . . 1.894 1.000 0.500 192 51.3 374 ERRMC BURIED . . . . . . . . 1.470 1.000 0.500 160 70.2 228 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 468 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 382 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 252 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 306 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 162 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.701 1.000 0.500 352 36.8 956 ERRALL SECONDARY STRUCTURE . . 1.667 1.000 0.500 232 47.2 492 ERRALL SURFACE . . . . . . . . 1.894 1.000 0.500 192 31.5 610 ERRALL BURIED . . . . . . . . 1.470 1.000 0.500 160 46.2 346 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 21 63 75 85 88 88 122 DISTCA CA (P) 17.21 51.64 61.48 69.67 72.13 122 DISTCA CA (RMS) 0.68 1.23 1.45 1.84 2.08 DISTCA ALL (N) 86 253 311 345 352 352 956 DISTALL ALL (P) 9.00 26.46 32.53 36.09 36.82 956 DISTALL ALL (RMS) 0.70 1.24 1.52 1.88 2.03 DISTALL END of the results output