####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 101 ( 404), selected 101 , name T0619TS328_1-D1 # Molecule2: number of CA atoms 101 ( 843), selected 101 , name T0619-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0619TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 101 1 - 101 2.57 2.57 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 60 42 - 101 1.95 2.62 LCS_AVERAGE: 47.28 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 63 - 91 0.86 3.61 LCS_AVERAGE: 18.84 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 101 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 1 L 1 19 33 101 4 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT S 2 S 2 19 33 101 9 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT P 3 P 3 19 33 101 9 15 41 70 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 4 R 4 19 33 101 9 15 36 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 5 E 5 19 33 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 6 A 6 19 33 101 9 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 7 R 7 19 33 101 9 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 8 D 8 19 33 101 9 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 9 R 9 19 33 101 9 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT Y 10 Y 10 19 33 101 9 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 11 L 11 19 33 101 9 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 12 A 12 19 33 101 9 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT H 13 H 13 19 33 101 3 6 43 69 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 14 R 14 19 33 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT Q 15 Q 15 19 33 101 4 15 20 68 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT T 16 T 16 19 33 101 7 15 32 68 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 17 D 17 19 33 101 4 22 48 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 18 A 18 19 33 101 7 18 36 69 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 19 A 19 19 33 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 20 D 20 17 33 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 21 A 21 17 33 101 5 22 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT S 22 S 22 17 33 101 5 22 47 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT I 23 I 23 17 33 101 7 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT K 24 K 24 17 33 101 7 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT S 25 S 25 17 33 101 7 23 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT F 26 F 26 17 33 101 7 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 27 R 27 17 33 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT Y 28 Y 28 17 33 101 7 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 29 R 29 17 33 101 7 23 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 30 L 30 17 33 101 7 22 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT K 31 K 31 17 33 101 3 19 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT H 32 H 32 17 33 101 6 11 25 43 69 87 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT F 33 F 33 7 33 101 6 7 8 9 15 27 29 73 91 95 98 99 99 100 101 101 101 101 101 101 LCS_GDT V 34 V 34 7 30 101 6 7 8 8 10 15 22 49 67 96 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 35 E 35 7 8 101 6 7 19 31 56 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT W 36 W 36 7 8 101 6 7 8 42 71 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 37 A 37 7 8 101 6 8 9 14 23 36 70 88 94 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 38 E 38 7 8 101 5 7 12 17 20 32 57 90 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 39 E 39 4 8 101 3 4 5 5 8 9 10 11 25 29 50 65 91 98 101 101 101 101 101 101 LCS_GDT R 40 R 40 4 5 101 3 4 5 5 7 7 10 11 19 27 47 83 88 100 101 101 101 101 101 101 LCS_GDT D 41 D 41 4 59 101 3 4 9 21 27 43 59 87 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT I 42 I 42 3 60 101 6 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT T 43 T 43 3 60 101 3 8 20 52 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 44 A 44 4 60 101 4 4 4 21 43 67 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT M 45 M 45 19 60 101 4 23 53 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 46 R 46 19 60 101 4 29 54 70 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 47 E 47 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 48 L 48 19 60 101 7 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT T 49 T 49 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT G 50 G 50 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT W 51 W 51 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT K 52 K 52 19 60 101 10 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 53 L 53 19 60 101 10 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 54 D 54 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 55 E 55 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT Y 56 Y 56 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 57 E 57 19 60 101 10 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT T 58 T 58 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT F 59 F 59 19 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 60 R 60 19 60 101 10 21 50 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 61 R 61 19 60 101 5 18 45 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT G 62 G 62 26 60 101 4 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT S 63 S 63 29 60 101 7 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 64 D 64 29 60 101 7 19 41 67 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT V 65 V 65 29 60 101 7 26 49 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT S 66 S 66 29 60 101 9 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT P 67 P 67 29 60 101 7 24 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 68 A 68 29 60 101 7 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT T 69 T 69 29 60 101 9 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 70 L 70 29 60 101 7 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT N 71 N 71 29 60 101 9 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT G 72 G 72 29 60 101 10 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 73 E 73 29 60 101 13 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT M 74 M 74 29 60 101 14 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT Q 75 Q 75 29 60 101 14 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT T 76 T 76 29 60 101 14 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 77 L 77 29 60 101 14 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT K 78 K 78 29 60 101 14 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT N 79 N 79 29 60 101 14 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT W 80 W 80 29 60 101 14 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 81 L 81 29 60 101 14 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 82 E 82 29 60 101 14 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT Y 83 Y 83 29 60 101 14 27 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 84 L 84 29 60 101 14 26 52 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT A 85 A 85 29 60 101 14 26 48 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT R 86 R 86 29 60 101 7 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT I 87 I 87 29 60 101 9 26 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 88 D 88 29 60 101 12 26 43 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT V 89 V 89 29 60 101 14 26 43 70 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT V 90 V 90 29 60 101 14 26 40 66 81 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 91 D 91 29 60 101 7 26 32 57 80 88 91 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 92 E 92 28 60 101 3 22 43 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT D 93 D 93 6 60 101 4 6 8 9 20 55 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT L 94 L 94 7 60 101 6 22 43 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT P 95 P 95 7 60 101 5 18 24 43 63 81 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT E 96 E 96 7 60 101 4 11 47 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT K 97 K 97 7 60 101 3 6 8 48 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT V 98 V 98 7 60 101 3 14 30 56 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT H 99 H 99 7 60 101 3 5 27 60 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT V 100 V 100 7 60 101 3 4 22 49 81 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_GDT P 101 P 101 3 60 101 8 15 22 37 70 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 LCS_AVERAGE LCS_A: 55.37 ( 18.84 47.28 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 29 54 71 82 88 92 94 95 97 98 99 99 100 101 101 101 101 101 101 GDT PERCENT_AT 13.86 28.71 53.47 70.30 81.19 87.13 91.09 93.07 94.06 96.04 97.03 98.02 98.02 99.01 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.78 1.08 1.32 1.52 1.66 1.81 1.88 1.96 2.10 2.20 2.28 2.28 2.45 2.57 2.57 2.57 2.57 2.57 2.57 GDT RMS_ALL_AT 3.91 2.76 2.72 2.63 2.61 2.61 2.59 2.58 2.58 2.57 2.57 2.58 2.58 2.57 2.57 2.57 2.57 2.57 2.57 2.57 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 1 L 1 1.693 4 0.118 0.118 2.365 72.976 36.488 LGA S 2 S 2 0.997 2 0.096 0.096 1.246 83.690 55.794 LGA P 3 P 3 2.424 3 0.078 0.078 2.424 68.810 39.320 LGA R 4 R 4 1.985 7 0.040 0.040 2.025 75.119 27.316 LGA E 5 E 5 0.626 5 0.020 0.020 0.894 92.857 41.270 LGA A 6 A 6 1.067 1 0.017 0.017 1.305 83.690 66.952 LGA R 7 R 7 1.237 7 0.098 0.098 1.237 85.952 31.255 LGA D 8 D 8 0.485 4 0.065 0.065 0.678 97.619 48.810 LGA R 9 R 9 0.798 7 0.041 0.041 0.937 92.857 33.766 LGA Y 10 Y 10 1.106 8 0.013 0.013 1.106 88.214 29.405 LGA L 11 L 11 0.798 4 0.022 0.022 0.798 90.476 45.238 LGA A 12 A 12 1.282 1 0.072 0.072 2.279 77.381 61.905 LGA H 13 H 13 2.180 6 0.033 0.033 2.180 68.810 27.524 LGA R 14 R 14 0.410 7 0.048 0.048 1.457 88.333 32.121 LGA Q 15 Q 15 2.576 5 0.277 0.277 4.485 54.286 24.127 LGA T 16 T 16 2.432 3 0.056 0.056 2.432 64.762 37.007 LGA D 17 D 17 1.513 4 0.298 0.298 1.619 79.405 39.702 LGA A 18 A 18 2.115 1 0.638 0.638 4.418 57.857 46.286 LGA A 19 A 19 0.889 1 0.053 0.053 1.056 88.214 70.571 LGA D 20 D 20 0.277 4 0.051 0.051 0.489 100.000 50.000 LGA A 21 A 21 1.146 1 0.026 0.026 1.711 81.548 65.238 LGA S 22 S 22 1.509 2 0.029 0.029 1.644 77.143 51.429 LGA I 23 I 23 1.128 4 0.027 0.027 1.240 85.952 42.976 LGA K 24 K 24 0.901 5 0.040 0.040 1.293 85.952 38.201 LGA S 25 S 25 1.333 2 0.018 0.018 1.333 81.429 54.286 LGA F 26 F 26 1.124 7 0.028 0.028 1.182 85.952 31.255 LGA R 27 R 27 0.284 7 0.117 0.117 1.123 90.595 32.944 LGA Y 28 Y 28 1.137 8 0.047 0.047 1.746 81.548 27.183 LGA R 29 R 29 1.468 7 0.047 0.047 1.589 77.143 28.052 LGA L 30 L 30 1.595 4 0.290 0.290 1.595 77.143 38.571 LGA K 31 K 31 1.842 5 0.097 0.097 2.304 68.810 30.582 LGA H 32 H 32 3.191 6 0.438 0.438 3.702 50.119 20.048 LGA F 33 F 33 6.616 7 0.180 0.180 6.616 20.595 7.489 LGA V 34 V 34 6.882 3 0.040 0.040 6.882 19.524 11.156 LGA E 35 E 35 3.592 5 0.044 0.044 3.984 50.238 22.328 LGA W 36 W 36 3.498 10 0.081 0.081 3.654 52.024 14.864 LGA A 37 A 37 5.944 1 0.050 0.050 5.944 26.310 21.048 LGA E 38 E 38 5.333 5 0.432 0.432 5.711 25.119 11.164 LGA E 39 E 39 8.338 5 0.018 0.018 10.096 6.190 2.751 LGA R 40 R 40 9.165 7 0.271 0.271 9.399 3.690 1.342 LGA D 41 D 41 5.733 4 0.607 0.607 6.646 23.333 11.667 LGA I 42 I 42 1.477 4 0.301 0.301 3.245 69.405 34.702 LGA T 43 T 43 2.713 3 0.157 0.157 3.631 57.976 33.129 LGA A 44 A 44 4.463 1 0.362 0.362 4.463 48.690 38.952 LGA M 45 M 45 1.134 4 0.092 0.092 2.074 77.381 38.690 LGA R 46 R 46 2.176 7 0.207 0.207 3.697 63.571 23.117 LGA E 47 E 47 0.531 5 0.133 0.133 0.861 90.476 40.212 LGA L 48 L 48 0.648 4 0.223 0.223 0.847 90.476 45.238 LGA T 49 T 49 1.228 3 0.023 0.023 1.233 81.429 46.531 LGA G 50 G 50 1.227 0 0.050 0.050 1.309 83.690 83.690 LGA W 51 W 51 1.480 10 0.056 0.056 1.480 81.429 23.265 LGA K 52 K 52 1.181 5 0.018 0.018 1.181 83.690 37.196 LGA L 53 L 53 0.646 4 0.031 0.031 0.716 90.476 45.238 LGA D 54 D 54 0.897 4 0.086 0.086 0.897 90.476 45.238 LGA E 55 E 55 0.930 5 0.067 0.067 0.930 90.476 40.212 LGA Y 56 Y 56 0.732 8 0.033 0.033 0.744 90.476 30.159 LGA E 57 E 57 0.984 5 0.047 0.047 1.195 88.214 39.206 LGA T 58 T 58 0.804 3 0.017 0.017 0.804 90.476 51.701 LGA F 59 F 59 0.782 7 0.086 0.086 0.862 90.476 32.900 LGA R 60 R 60 1.462 7 0.016 0.016 1.462 81.429 29.610 LGA R 61 R 61 1.671 7 0.156 0.156 1.671 77.143 28.052 LGA G 62 G 62 1.121 0 0.157 0.157 1.165 85.952 85.952 LGA S 63 S 63 0.490 2 0.635 0.635 2.320 86.429 57.619 LGA D 64 D 64 2.716 4 0.102 0.102 2.716 62.857 31.429 LGA V 65 V 65 1.904 3 0.025 0.025 2.167 68.810 39.320 LGA S 66 S 66 1.624 2 0.033 0.033 1.699 72.857 48.571 LGA P 67 P 67 2.018 3 0.035 0.035 2.018 70.833 40.476 LGA A 68 A 68 2.092 1 0.063 0.063 2.092 68.810 55.048 LGA T 69 T 69 1.704 3 0.050 0.050 1.727 72.857 41.633 LGA L 70 L 70 1.462 4 0.075 0.075 1.462 81.429 40.714 LGA N 71 N 71 1.682 4 0.012 0.012 1.684 72.857 36.429 LGA G 72 G 72 1.593 0 0.066 0.066 1.639 72.857 72.857 LGA E 73 E 73 1.588 5 0.046 0.046 1.599 72.857 32.381 LGA M 74 M 74 1.429 4 0.054 0.054 1.548 75.000 37.500 LGA Q 75 Q 75 1.705 5 0.020 0.020 1.742 72.857 32.381 LGA T 76 T 76 1.833 3 0.046 0.046 1.840 72.857 41.633 LGA L 77 L 77 1.845 4 0.029 0.029 1.857 72.857 36.429 LGA K 78 K 78 1.617 5 0.030 0.030 1.707 72.857 32.381 LGA N 79 N 79 1.463 4 0.028 0.028 1.568 77.143 38.571 LGA W 80 W 80 1.928 10 0.038 0.038 1.928 72.857 20.816 LGA L 81 L 81 1.527 4 0.027 0.027 1.651 77.143 38.571 LGA E 82 E 82 1.100 5 0.035 0.035 1.259 81.429 36.190 LGA Y 83 Y 83 1.438 8 0.124 0.124 1.438 81.429 27.143 LGA L 84 L 84 1.670 4 0.020 0.020 1.734 72.857 36.429 LGA A 85 A 85 2.023 1 0.018 0.018 2.082 68.810 55.048 LGA R 86 R 86 1.432 7 0.028 0.028 1.535 77.143 28.052 LGA I 87 I 87 1.129 4 0.124 0.124 2.046 75.119 37.560 LGA D 88 D 88 2.044 4 0.039 0.039 2.710 64.881 32.440 LGA V 89 V 89 2.432 3 0.101 0.101 3.382 59.167 33.810 LGA V 90 V 90 2.599 3 0.039 0.039 2.607 60.952 34.830 LGA D 91 D 91 3.279 4 0.655 0.655 4.216 50.476 25.238 LGA E 92 E 92 1.814 5 0.669 0.669 3.825 67.857 30.159 LGA D 93 D 93 4.132 4 0.497 0.497 4.132 54.048 27.024 LGA L 94 L 94 2.005 4 0.236 0.236 2.845 59.048 29.524 LGA P 95 P 95 3.760 3 0.195 0.195 3.760 53.810 30.748 LGA E 96 E 96 1.736 5 0.044 0.044 2.247 68.810 30.582 LGA K 97 K 97 2.816 5 0.032 0.032 3.544 57.619 25.608 LGA V 98 V 98 2.350 3 0.031 0.031 2.350 70.952 40.544 LGA H 99 H 99 2.560 6 0.230 0.230 2.560 62.857 25.143 LGA V 100 V 100 2.993 3 0.148 0.148 2.993 59.048 33.741 LGA P 101 P 101 3.262 3 0.455 0.455 4.046 50.357 28.776 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 101 404 404 100.00 843 404 47.92 101 SUMMARY(RMSD_GDC): 2.570 2.475 2.475 71.081 36.691 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 101 101 4.0 94 1.88 73.020 72.003 4.739 LGA_LOCAL RMSD: 1.884 Number of atoms: 94 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.585 Number of assigned atoms: 101 Std_ASGN_ATOMS RMSD: 2.570 Standard rmsd on all 101 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.764669 * X + -0.618494 * Y + 0.180961 * Z + 12.201527 Y_new = 0.304141 * X + -0.593940 * Y + -0.744805 * Z + 26.668545 Z_new = 0.568137 * X + -0.514491 * Y + 0.642277 * Z + 26.857962 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.763034 -0.604240 -0.675377 [DEG: 158.3102 -34.6204 -38.6962 ] ZXZ: 0.238346 0.873332 2.306684 [DEG: 13.6562 50.0382 132.1632 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0619TS328_1-D1 REMARK 2: T0619-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0619TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 101 101 4.0 94 1.88 72.003 2.57 REMARK ---------------------------------------------------------- MOLECULE T0619TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0619 REMARK MODEL 1 REMARK PARENT 2kd1_A ATOM 1 N LEU 1 1.338 28.651 15.475 1.00 3.00 N ATOM 2 CA LEU 1 1.876 29.242 16.696 1.00 3.00 C ATOM 3 C LEU 1 3.397 29.028 16.765 1.00 3.00 C ATOM 4 O LEU 1 3.874 27.889 16.901 1.00 3.00 O ATOM 5 N SER 2 4.140 30.135 16.605 1.00 3.00 N ATOM 6 CA SER 2 5.588 30.159 16.787 1.00 3.00 C ATOM 7 C SER 2 5.889 30.033 18.288 1.00 3.00 C ATOM 8 O SER 2 5.138 30.565 19.121 1.00 3.00 O ATOM 9 N PRO 3 6.979 29.331 18.620 1.00 3.00 N ATOM 10 CA PRO 3 7.304 28.953 20.004 1.00 3.00 C ATOM 11 C PRO 3 7.523 30.187 20.907 1.00 3.00 C ATOM 12 O PRO 3 7.154 30.150 22.068 1.00 3.00 O ATOM 13 N ARG 4 8.056 31.279 20.331 1.00 3.00 N ATOM 14 CA ARG 4 8.314 32.526 21.069 1.00 3.00 C ATOM 15 C ARG 4 7.031 33.241 21.457 1.00 3.00 C ATOM 16 O ARG 4 6.927 33.792 22.556 1.00 3.00 O ATOM 17 N GLU 5 6.041 33.194 20.540 1.00 3.00 N ATOM 18 CA GLU 5 4.679 33.715 20.781 1.00 3.00 C ATOM 19 C GLU 5 4.014 32.928 21.915 1.00 3.00 C ATOM 20 O GLU 5 3.337 33.493 22.788 1.00 3.00 O ATOM 21 N ALA 6 4.241 31.605 21.873 1.00 3.00 N ATOM 22 CA ALA 6 3.717 30.664 22.857 1.00 3.00 C ATOM 23 C ALA 6 4.369 30.877 24.238 1.00 3.00 C ATOM 24 O ALA 6 3.691 30.783 25.256 1.00 3.00 O ATOM 25 N ARG 7 5.682 31.162 24.247 1.00 3.00 N ATOM 26 CA ARG 7 6.460 31.373 25.491 1.00 3.00 C ATOM 27 C ARG 7 5.966 32.596 26.251 1.00 3.00 C ATOM 28 O ARG 7 5.988 32.598 27.471 1.00 3.00 O ATOM 29 N ASP 8 5.523 33.619 25.506 1.00 3.00 N ATOM 30 CA ASP 8 4.906 34.820 26.084 1.00 3.00 C ATOM 31 C ASP 8 3.562 34.470 26.738 1.00 3.00 C ATOM 32 O ASP 8 3.338 34.796 27.899 1.00 3.00 O ATOM 33 N ARG 9 2.696 33.768 25.986 1.00 3.00 N ATOM 34 CA ARG 9 1.353 33.352 26.456 1.00 3.00 C ATOM 35 C ARG 9 1.445 32.438 27.705 1.00 3.00 C ATOM 36 O ARG 9 0.622 32.529 28.624 1.00 3.00 O ATOM 37 N TYR 10 2.468 31.569 27.710 1.00 3.00 N ATOM 38 CA TYR 10 2.785 30.662 28.825 1.00 3.00 C ATOM 39 C TYR 10 3.281 31.472 30.034 1.00 3.00 C ATOM 40 O TYR 10 2.831 31.264 31.159 1.00 3.00 O ATOM 41 N LEU 11 4.212 32.397 29.764 1.00 3.00 N ATOM 42 CA LEU 11 4.921 33.164 30.796 1.00 3.00 C ATOM 43 C LEU 11 3.984 34.103 31.570 1.00 3.00 C ATOM 44 O LEU 11 4.050 34.154 32.798 1.00 3.00 O ATOM 45 N ALA 12 3.121 34.829 30.832 1.00 3.00 N ATOM 46 CA ALA 12 2.211 35.854 31.397 1.00 3.00 C ATOM 47 C ALA 12 1.381 35.293 32.561 1.00 3.00 C ATOM 48 O ALA 12 1.375 35.855 33.669 1.00 3.00 O ATOM 49 N HIS 13 0.739 34.151 32.307 1.00 3.00 N ATOM 50 CA HIS 13 -0.114 33.481 33.293 1.00 3.00 C ATOM 51 C HIS 13 0.737 32.815 34.411 1.00 3.00 C ATOM 52 O HIS 13 0.285 32.693 35.560 1.00 3.00 O ATOM 53 N ARG 14 2.001 32.460 34.086 1.00 3.00 N ATOM 54 CA ARG 14 2.879 31.670 34.976 1.00 3.00 C ATOM 55 C ARG 14 3.581 32.558 36.030 1.00 3.00 C ATOM 56 O ARG 14 4.015 32.048 37.070 1.00 3.00 O ATOM 57 N GLN 15 3.692 33.877 35.750 1.00 3.00 N ATOM 58 CA GLN 15 4.221 34.889 36.712 1.00 3.00 C ATOM 59 C GLN 15 3.478 34.839 38.064 1.00 3.00 C ATOM 60 O GLN 15 4.069 35.072 39.120 1.00 3.00 O ATOM 61 N THR 16 2.174 34.524 37.995 1.00 3.00 N ATOM 62 CA THR 16 1.283 34.447 39.169 1.00 3.00 C ATOM 63 C THR 16 1.555 33.194 40.030 1.00 3.00 C ATOM 64 O THR 16 1.143 33.146 41.190 1.00 3.00 O ATOM 65 N ASP 17 2.238 32.184 39.459 1.00 3.00 N ATOM 66 CA ASP 17 2.530 30.905 40.146 1.00 3.00 C ATOM 67 C ASP 17 3.985 30.853 40.649 1.00 3.00 C ATOM 68 O ASP 17 4.261 30.272 41.705 1.00 3.00 O ATOM 69 N ALA 18 4.913 31.455 39.883 1.00 3.00 N ATOM 70 CA ALA 18 6.355 31.456 40.225 1.00 3.00 C ATOM 71 C ALA 18 6.714 32.659 41.125 1.00 3.00 C ATOM 72 O ALA 18 7.595 32.562 41.987 1.00 3.00 O ATOM 73 N ALA 19 6.003 33.779 40.920 1.00 3.00 N ATOM 74 CA ALA 19 6.279 35.043 41.609 1.00 3.00 C ATOM 75 C ALA 19 6.993 36.019 40.676 1.00 3.00 C ATOM 76 O ALA 19 7.749 35.585 39.810 1.00 3.00 O ATOM 77 N ASP 20 6.775 37.332 40.879 1.00 3.00 N ATOM 78 CA ASP 20 7.216 38.408 39.949 1.00 3.00 C ATOM 79 C ASP 20 8.763 38.489 39.830 1.00 3.00 C ATOM 80 O ASP 20 9.301 38.541 38.715 1.00 3.00 O ATOM 81 N ALA 21 9.465 38.460 40.977 1.00 3.00 N ATOM 82 CA ALA 21 10.949 38.550 41.020 1.00 3.00 C ATOM 83 C ALA 21 11.602 37.296 40.392 1.00 3.00 C ATOM 84 O ALA 21 12.672 37.383 39.784 1.00 3.00 O ATOM 85 N SER 22 10.918 36.147 40.544 1.00 3.00 N ATOM 86 CA SER 22 11.340 34.853 39.970 1.00 3.00 C ATOM 87 C SER 22 11.092 34.841 38.452 1.00 3.00 C ATOM 88 O SER 22 11.886 34.293 37.674 1.00 3.00 O ATOM 89 N ILE 23 9.991 35.494 38.058 1.00 3.00 N ATOM 90 CA ILE 23 9.518 35.540 36.677 1.00 3.00 C ATOM 91 C ILE 23 10.475 36.354 35.792 1.00 3.00 C ATOM 92 O ILE 23 10.752 35.960 34.660 1.00 3.00 O ATOM 93 N LYS 24 10.997 37.473 36.342 1.00 3.00 N ATOM 94 CA LYS 24 11.998 38.329 35.654 1.00 3.00 C ATOM 95 C LYS 24 13.196 37.498 35.159 1.00 3.00 C ATOM 96 O LYS 24 13.735 37.740 34.080 1.00 3.00 O ATOM 97 N SER 25 13.564 36.498 35.967 1.00 3.00 N ATOM 98 CA SER 25 14.731 35.650 35.732 1.00 3.00 C ATOM 99 C SER 25 14.411 34.598 34.654 1.00 3.00 C ATOM 100 O SER 25 15.246 34.321 33.785 1.00 3.00 O ATOM 101 N PHE 26 13.165 34.064 34.692 1.00 3.00 N ATOM 102 CA PHE 26 12.690 33.054 33.718 1.00 3.00 C ATOM 103 C PHE 26 12.629 33.654 32.301 1.00 3.00 C ATOM 104 O PHE 26 13.061 33.018 31.341 1.00 3.00 O ATOM 105 N ARG 27 12.099 34.892 32.187 1.00 3.00 N ATOM 106 CA ARG 27 12.012 35.604 30.896 1.00 3.00 C ATOM 107 C ARG 27 13.361 36.232 30.529 1.00 3.00 C ATOM 108 O ARG 27 13.664 36.412 29.347 1.00 3.00 O ATOM 109 N TYR 28 14.163 36.543 31.560 1.00 3.00 N ATOM 110 CA TYR 28 15.554 36.954 31.373 1.00 3.00 C ATOM 111 C TYR 28 16.357 35.876 30.658 1.00 3.00 C ATOM 112 O TYR 28 17.261 36.167 29.880 1.00 3.00 O ATOM 113 N ARG 29 15.964 34.620 30.908 1.00 3.00 N ATOM 114 CA ARG 29 16.488 33.450 30.217 1.00 3.00 C ATOM 115 C ARG 29 15.778 33.243 28.870 1.00 3.00 C ATOM 116 O ARG 29 16.419 32.853 27.908 1.00 3.00 O ATOM 117 N LEU 30 14.453 33.511 28.804 1.00 3.00 N ATOM 118 CA LEU 30 13.654 33.300 27.575 1.00 3.00 C ATOM 119 C LEU 30 14.182 34.155 26.414 1.00 3.00 C ATOM 120 O LEU 30 14.813 33.627 25.501 1.00 3.00 O ATOM 121 N LYS 31 13.987 35.477 26.494 1.00 3.00 N ATOM 122 CA LYS 31 14.297 36.410 25.382 1.00 3.00 C ATOM 123 C LYS 31 15.801 36.440 25.018 1.00 3.00 C ATOM 124 O LYS 31 16.156 36.799 23.895 1.00 3.00 O ATOM 125 N HIS 32 16.662 36.039 25.970 1.00 3.00 N ATOM 126 CA HIS 32 18.119 35.987 25.770 1.00 3.00 C ATOM 127 C HIS 32 18.969 35.236 24.753 1.00 3.00 C ATOM 128 O HIS 32 18.533 34.859 23.664 1.00 3.00 O ATOM 129 N PHE 33 20.185 34.971 25.190 1.00 3.00 N ATOM 130 CA PHE 33 21.108 34.209 24.408 1.00 3.00 C ATOM 131 C PHE 33 20.458 32.934 23.877 1.00 3.00 C ATOM 132 O PHE 33 20.071 32.868 22.717 1.00 3.00 O ATOM 133 N VAL 34 20.339 31.896 24.717 1.00 3.00 N ATOM 134 CA VAL 34 19.693 30.691 24.241 1.00 3.00 C ATOM 135 C VAL 34 18.607 31.060 23.279 1.00 3.00 C ATOM 136 O VAL 34 18.548 30.522 22.171 1.00 3.00 O ATOM 137 N GLU 35 17.736 31.991 23.747 1.00 9.00 N ATOM 138 CA GLU 35 16.601 32.507 22.992 1.00 9.00 C ATOM 139 C GLU 35 17.030 33.094 21.691 1.00 9.00 C ATOM 140 O GLU 35 16.328 33.009 20.687 1.00 9.00 O ATOM 141 N TRP 36 18.188 33.718 21.745 1.00 3.00 N ATOM 142 CA TRP 36 18.838 34.351 20.635 1.00 3.00 C ATOM 143 C TRP 36 19.291 33.276 19.687 1.00 3.00 C ATOM 144 O TRP 36 18.858 33.211 18.538 1.00 3.00 O ATOM 145 N ALA 37 20.158 32.423 20.182 1.00 3.00 N ATOM 146 CA ALA 37 20.623 31.306 19.394 1.00 3.00 C ATOM 147 C ALA 37 19.391 30.571 18.853 1.00 3.00 C ATOM 148 O ALA 37 19.361 30.081 17.745 1.00 3.00 O ATOM 149 N GLU 38 18.325 30.567 19.642 1.00 3.00 N ATOM 150 CA GLU 38 17.093 29.929 19.243 1.00 3.00 C ATOM 151 C GLU 38 15.839 29.134 18.794 1.00 3.00 C ATOM 152 O GLU 38 15.626 28.915 17.604 1.00 3.00 O ATOM 153 N GLU 39 14.988 28.772 19.766 1.00 3.00 N ATOM 154 CA GLU 39 13.809 27.899 19.564 1.00 3.00 C ATOM 155 C GLU 39 12.523 28.710 19.316 1.00 3.00 C ATOM 156 O GLU 39 11.577 28.197 18.722 1.00 3.00 O ATOM 157 N ARG 40 12.500 29.964 19.799 1.00 3.00 N ATOM 158 CA ARG 40 11.297 30.800 19.768 1.00 3.00 C ATOM 159 C ARG 40 10.923 31.256 18.364 1.00 3.00 C ATOM 160 O ARG 40 9.742 31.301 18.012 1.00 3.00 O ATOM 161 N ASP 41 11.948 31.613 17.569 1.00 3.00 N ATOM 162 CA ASP 41 11.805 31.982 16.137 1.00 3.00 C ATOM 163 C ASP 41 12.760 30.946 15.560 1.00 3.00 C ATOM 164 O ASP 41 13.776 30.659 16.199 1.00 3.00 O ATOM 165 N ILE 42 12.395 30.358 14.428 1.00 3.00 N ATOM 166 CA ILE 42 13.020 29.152 13.928 1.00 3.00 C ATOM 167 C ILE 42 12.129 27.926 14.159 1.00 3.00 C ATOM 168 O ILE 42 12.629 26.905 14.618 1.00 3.00 O ATOM 169 N THR 43 10.862 28.056 13.829 1.00 3.00 N ATOM 170 CA THR 43 9.738 27.152 14.018 1.00 3.00 C ATOM 171 C THR 43 9.395 26.940 15.481 1.00 3.00 C ATOM 172 O THR 43 8.219 26.903 15.849 1.00 3.00 O ATOM 173 N ALA 44 10.373 26.810 16.354 1.00 9.00 N ATOM 174 CA ALA 44 10.131 26.646 17.803 1.00 9.00 C ATOM 175 C ALA 44 9.242 25.437 18.023 1.00 9.00 C ATOM 176 O ALA 44 9.642 24.339 17.631 1.00 9.00 O ATOM 177 N MET 45 8.076 25.583 18.637 1.00 3.00 N ATOM 178 CA MET 45 7.296 24.412 19.022 1.00 3.00 C ATOM 179 C MET 45 6.602 23.724 17.869 1.00 3.00 C ATOM 180 O MET 45 6.076 22.612 18.035 1.00 3.00 O ATOM 181 N ARG 46 6.574 24.352 16.701 1.00 3.00 N ATOM 182 CA ARG 46 5.932 23.721 15.558 1.00 3.00 C ATOM 183 C ARG 46 6.903 23.059 14.610 1.00 3.00 C ATOM 184 O ARG 46 6.581 22.828 13.438 1.00 3.00 O ATOM 185 N GLU 47 8.081 22.727 15.111 1.00 3.00 N ATOM 186 CA GLU 47 9.137 22.247 14.212 1.00 3.00 C ATOM 187 C GLU 47 10.288 22.025 15.210 1.00 3.00 C ATOM 188 O GLU 47 11.392 21.675 14.790 1.00 3.00 O ATOM 189 N LEU 48 10.024 22.221 16.522 1.00 3.00 N ATOM 190 CA LEU 48 10.989 21.888 17.597 1.00 3.00 C ATOM 191 C LEU 48 11.278 20.371 17.614 1.00 3.00 C ATOM 192 O LEU 48 10.518 19.597 18.194 1.00 3.00 O ATOM 193 N THR 49 12.355 19.964 16.935 1.00 3.00 N ATOM 194 CA THR 49 12.836 18.573 16.939 1.00 3.00 C ATOM 195 C THR 49 13.951 18.410 18.007 1.00 3.00 C ATOM 196 O THR 49 14.385 19.405 18.617 1.00 3.00 O ATOM 197 N GLY 50 14.403 17.163 18.224 1.00 3.00 N ATOM 198 CA GLY 50 15.432 16.829 19.240 1.00 3.00 C ATOM 199 C GLY 50 16.790 17.489 18.906 1.00 3.00 C ATOM 200 O GLY 50 17.572 17.814 19.807 1.00 3.00 O ATOM 201 N TRP 51 17.046 17.685 17.596 1.00 3.00 N ATOM 202 CA TRP 51 18.249 18.382 17.090 1.00 3.00 C ATOM 203 C TRP 51 18.319 19.816 17.651 1.00 3.00 C ATOM 204 O TRP 51 19.390 20.300 17.988 1.00 3.00 O ATOM 205 N LYS 52 17.148 20.458 17.781 1.00 3.00 N ATOM 206 CA LYS 52 17.031 21.845 18.281 1.00 3.00 C ATOM 207 C LYS 52 17.396 21.935 19.775 1.00 3.00 C ATOM 208 O LYS 52 18.010 22.910 20.211 1.00 3.00 O ATOM 209 N LEU 53 17.035 20.893 20.541 1.00 3.00 N ATOM 210 CA LEU 53 17.354 20.814 21.984 1.00 3.00 C ATOM 211 C LEU 53 18.842 20.484 22.182 1.00 3.00 C ATOM 212 O LEU 53 19.460 20.944 23.145 1.00 3.00 O ATOM 213 N ASP 54 19.394 19.693 21.244 1.00 3.00 N ATOM 214 CA ASP 54 20.821 19.328 21.217 1.00 3.00 C ATOM 215 C ASP 54 21.692 20.571 20.970 1.00 3.00 C ATOM 216 O ASP 54 22.630 20.838 21.730 1.00 3.00 O ATOM 217 N GLU 55 21.339 21.327 19.906 1.00 3.00 N ATOM 218 CA GLU 55 22.045 22.562 19.495 1.00 3.00 C ATOM 219 C GLU 55 21.981 23.606 20.618 1.00 3.00 C ATOM 220 O GLU 55 22.912 24.391 20.799 1.00 3.00 O ATOM 221 N TYR 56 20.863 23.584 21.372 1.00 3.00 N ATOM 222 CA TYR 56 20.644 24.487 22.506 1.00 3.00 C ATOM 223 C TYR 56 21.637 24.158 23.647 1.00 3.00 C ATOM 224 O TYR 56 22.326 25.046 24.126 1.00 3.00 O ATOM 225 N GLU 57 21.724 22.864 24.031 1.00 3.00 N ATOM 226 CA GLU 57 22.610 22.392 25.136 1.00 3.00 C ATOM 227 C GLU 57 24.103 22.613 24.796 1.00 3.00 C ATOM 228 O GLU 57 24.907 22.977 25.671 1.00 3.00 O ATOM 229 N THR 58 24.446 22.425 23.513 1.00 3.00 N ATOM 230 CA THR 58 25.812 22.668 22.998 1.00 3.00 C ATOM 231 C THR 58 26.149 24.166 23.085 1.00 3.00 C ATOM 232 O THR 58 27.272 24.535 23.424 1.00 3.00 O ATOM 233 N PHE 59 25.136 25.010 22.815 1.00 3.00 N ATOM 234 CA PHE 59 25.247 26.473 22.915 1.00 3.00 C ATOM 235 C PHE 59 25.523 26.917 24.367 1.00 3.00 C ATOM 236 O PHE 59 26.298 27.837 24.579 1.00 3.00 O ATOM 237 N ARG 60 24.899 26.223 25.352 1.00 3.00 N ATOM 238 CA ARG 60 25.008 26.568 26.802 1.00 3.00 C ATOM 239 C ARG 60 26.447 26.391 27.304 1.00 3.00 C ATOM 240 O ARG 60 26.926 27.148 28.161 1.00 3.00 O ATOM 241 N ARG 61 27.103 25.367 26.746 1.00 3.00 N ATOM 242 CA ARG 61 28.523 25.074 26.968 1.00 3.00 C ATOM 243 C ARG 61 29.395 26.250 26.477 1.00 3.00 C ATOM 244 O ARG 61 30.269 26.731 27.202 1.00 3.00 O ATOM 245 N GLY 62 29.124 26.701 25.235 1.00 3.00 N ATOM 246 CA GLY 62 29.855 27.818 24.595 1.00 3.00 C ATOM 247 C GLY 62 29.548 29.169 25.278 1.00 3.00 C ATOM 248 O GLY 62 30.382 30.079 25.259 1.00 3.00 O ATOM 249 N SER 63 28.341 29.290 25.866 1.00 3.00 N ATOM 250 CA SER 63 27.942 30.460 26.679 1.00 3.00 C ATOM 251 C SER 63 28.691 30.448 28.021 1.00 3.00 C ATOM 252 O SER 63 28.885 31.498 28.639 1.00 3.00 O ATOM 253 N ASP 64 29.110 29.243 28.448 1.00 3.00 N ATOM 254 CA ASP 64 29.762 29.048 29.733 1.00 3.00 C ATOM 255 C ASP 64 28.796 29.160 30.904 1.00 3.00 C ATOM 256 O ASP 64 29.190 29.576 32.001 1.00 3.00 O ATOM 257 N VAL 65 27.519 28.808 30.658 1.00 3.00 N ATOM 258 CA VAL 65 26.469 28.806 31.694 1.00 3.00 C ATOM 259 C VAL 65 26.739 27.703 32.722 1.00 3.00 C ATOM 260 O VAL 65 27.192 26.609 32.366 1.00 3.00 O ATOM 261 N SER 66 26.451 28.008 33.992 1.00 3.00 N ATOM 262 CA SER 66 26.738 27.121 35.126 1.00 3.00 C ATOM 263 C SER 66 25.617 26.083 35.292 1.00 3.00 C ATOM 264 O SER 66 24.537 26.250 34.727 1.00 3.00 O ATOM 265 N PRO 67 25.897 25.047 36.103 1.00 3.00 N ATOM 266 CA PRO 67 25.022 23.862 36.306 1.00 3.00 C ATOM 267 C PRO 67 23.538 24.228 36.560 1.00 3.00 C ATOM 268 O PRO 67 22.636 23.656 35.938 1.00 3.00 O ATOM 269 N ALA 68 23.311 25.214 37.449 1.00 3.00 N ATOM 270 CA ALA 68 21.971 25.670 37.769 1.00 3.00 C ATOM 271 C ALA 68 21.281 26.335 36.601 1.00 3.00 C ATOM 272 O ALA 68 20.165 25.965 36.267 1.00 3.00 O ATOM 273 N THR 69 21.968 27.297 35.958 1.00 3.00 N ATOM 274 CA THR 69 21.421 28.044 34.809 1.00 3.00 C ATOM 275 C THR 69 21.034 27.085 33.666 1.00 3.00 C ATOM 276 O THR 69 19.924 27.177 33.142 1.00 3.00 O ATOM 277 N LEU 70 21.943 26.130 33.353 1.00 3.00 N ATOM 278 CA LEU 70 21.720 25.097 32.323 1.00 3.00 C ATOM 279 C LEU 70 20.416 24.333 32.606 1.00 3.00 C ATOM 280 O LEU 70 19.554 24.252 31.742 1.00 3.00 O ATOM 281 N ASN 71 20.264 23.835 33.845 1.00 3.00 N ATOM 282 CA ASN 71 19.097 23.023 34.215 1.00 3.00 C ATOM 283 C ASN 71 17.805 23.863 34.201 1.00 3.00 C ATOM 284 O ASN 71 16.797 23.408 33.679 1.00 3.00 O ATOM 285 N GLY 72 17.868 25.103 34.730 1.00 3.00 N ATOM 286 CA GLY 72 16.674 25.957 34.927 1.00 3.00 C ATOM 287 C GLY 72 16.066 26.386 33.587 1.00 3.00 C ATOM 288 O GLY 72 14.848 26.386 33.440 1.00 3.00 O ATOM 289 N GLU 73 16.927 26.742 32.620 1.00 3.00 N ATOM 290 CA GLU 73 16.477 27.196 31.290 1.00 3.00 C ATOM 291 C GLU 73 15.885 26.019 30.497 1.00 3.00 C ATOM 292 O GLU 73 14.926 26.195 29.745 1.00 3.00 O ATOM 293 N MET 74 16.457 24.814 30.715 1.00 3.00 N ATOM 294 CA MET 74 15.899 23.553 30.206 1.00 3.00 C ATOM 295 C MET 74 14.521 23.293 30.858 1.00 3.00 C ATOM 296 O MET 74 13.590 22.899 30.173 1.00 3.00 O ATOM 297 N GLN 75 14.405 23.583 32.178 1.00 3.00 N ATOM 298 CA GLN 75 13.138 23.422 32.938 1.00 3.00 C ATOM 299 C GLN 75 12.041 24.322 32.356 1.00 3.00 C ATOM 300 O GLN 75 10.912 23.892 32.253 1.00 3.00 O ATOM 301 N THR 76 12.406 25.564 31.981 1.00 3.00 N ATOM 302 CA THR 76 11.463 26.551 31.413 1.00 3.00 C ATOM 303 C THR 76 10.913 26.052 30.055 1.00 3.00 C ATOM 304 O THR 76 9.701 26.118 29.806 1.00 3.00 O ATOM 305 N LEU 77 11.823 25.510 29.213 1.00 3.00 N ATOM 306 CA LEU 77 11.471 24.911 27.905 1.00 3.00 C ATOM 307 C LEU 77 10.530 23.714 28.105 1.00 3.00 C ATOM 308 O LEU 77 9.501 23.603 27.441 1.00 3.00 O ATOM 309 N LYS 78 10.901 22.838 29.051 1.00 3.00 N ATOM 310 CA LYS 78 10.126 21.639 29.380 1.00 3.00 C ATOM 311 C LYS 78 8.730 22.022 29.878 1.00 3.00 C ATOM 312 O LYS 78 7.769 21.503 29.376 1.00 3.00 O ATOM 313 N ASN 79 8.657 22.993 30.805 1.00 3.00 N ATOM 314 CA ASN 79 7.398 23.449 31.453 1.00 3.00 C ATOM 315 C ASN 79 6.412 24.029 30.427 1.00 3.00 C ATOM 316 O ASN 79 5.199 23.810 30.537 1.00 3.00 O ATOM 317 N TRP 80 6.942 24.760 29.432 1.00 3.00 N ATOM 318 CA TRP 80 6.126 25.291 28.331 1.00 3.00 C ATOM 319 C TRP 80 5.647 24.148 27.414 1.00 3.00 C ATOM 320 O TRP 80 4.488 24.121 27.023 1.00 3.00 O ATOM 321 N LEU 81 6.532 23.174 27.134 1.00 3.00 N ATOM 322 CA LEU 81 6.185 22.004 26.298 1.00 3.00 C ATOM 323 C LEU 81 5.210 21.044 27.033 1.00 3.00 C ATOM 324 O LEU 81 4.439 20.344 26.383 1.00 3.00 O ATOM 325 N GLU 82 5.246 21.042 28.387 1.00 3.00 N ATOM 326 CA GLU 82 4.297 20.287 29.247 1.00 3.00 C ATOM 327 C GLU 82 2.900 20.869 29.062 1.00 3.00 C ATOM 328 O GLU 82 1.919 20.148 28.856 1.00 3.00 O ATOM 329 N TYR 83 2.858 22.206 29.105 1.00 3.00 N ATOM 330 CA TYR 83 1.631 22.985 28.941 1.00 3.00 C ATOM 331 C TYR 83 1.148 22.929 27.481 1.00 3.00 C ATOM 332 O TYR 83 -0.034 23.092 27.217 1.00 3.00 O ATOM 333 N LEU 84 2.078 22.690 26.541 1.00 3.00 N ATOM 334 CA LEU 84 1.751 22.539 25.110 1.00 3.00 C ATOM 335 C LEU 84 1.074 21.182 24.842 1.00 3.00 C ATOM 336 O LEU 84 0.254 21.069 23.939 1.00 3.00 O ATOM 337 N ALA 85 1.432 20.150 25.635 1.00 3.00 N ATOM 338 CA ALA 85 0.722 18.847 25.617 1.00 3.00 C ATOM 339 C ALA 85 -0.663 19.012 26.279 1.00 3.00 C ATOM 340 O ALA 85 -1.664 18.455 25.819 1.00 3.00 O ATOM 341 N ARG 86 -0.693 19.812 27.360 1.00 3.00 N ATOM 342 CA ARG 86 -1.932 20.189 28.078 1.00 3.00 C ATOM 343 C ARG 86 -2.929 20.911 27.137 1.00 3.00 C ATOM 344 O ARG 86 -4.133 20.641 27.175 1.00 3.00 O ATOM 345 N ILE 87 -2.406 21.810 26.280 1.00 3.00 N ATOM 346 CA ILE 87 -3.214 22.532 25.268 1.00 3.00 C ATOM 347 C ILE 87 -3.374 21.691 23.976 1.00 3.00 C ATOM 348 O ILE 87 -4.075 22.107 23.056 1.00 3.00 O ATOM 349 N ASP 88 -2.684 20.521 23.929 1.00 3.00 N ATOM 350 CA ASP 88 -2.744 19.530 22.817 1.00 3.00 C ATOM 351 C ASP 88 -2.151 20.089 21.500 1.00 3.00 C ATOM 352 O ASP 88 -2.453 19.606 20.404 1.00 3.00 O ATOM 353 N VAL 89 -1.280 21.093 21.646 1.00 3.00 N ATOM 354 CA VAL 89 -0.507 21.690 20.547 1.00 3.00 C ATOM 355 C VAL 89 0.540 20.691 20.016 1.00 3.00 C ATOM 356 O VAL 89 0.709 20.536 18.807 1.00 3.00 O ATOM 357 N VAL 90 1.212 19.989 20.948 1.00 3.00 N ATOM 358 CA VAL 90 2.170 18.908 20.623 1.00 3.00 C ATOM 359 C VAL 90 1.741 17.634 21.359 1.00 3.00 C ATOM 360 O VAL 90 1.096 17.707 22.416 1.00 3.00 O ATOM 361 N ASP 91 2.091 16.476 20.790 1.00 3.00 N ATOM 362 CA ASP 91 1.727 15.162 21.334 1.00 3.00 C ATOM 363 C ASP 91 2.750 14.688 22.383 1.00 3.00 C ATOM 364 O ASP 91 2.411 13.894 23.271 1.00 3.00 O ATOM 365 N GLU 92 3.994 15.196 22.281 1.00 3.00 N ATOM 366 CA GLU 92 5.118 14.740 23.113 1.00 3.00 C ATOM 367 C GLU 92 6.114 15.895 23.334 1.00 3.00 C ATOM 368 O GLU 92 6.418 16.644 22.402 1.00 3.00 O ATOM 369 N ASP 93 6.605 16.016 24.581 1.00 3.00 N ATOM 370 CA ASP 93 7.599 17.027 24.982 1.00 3.00 C ATOM 371 C ASP 93 8.979 16.602 24.442 1.00 3.00 C ATOM 372 O ASP 93 9.560 15.624 24.917 1.00 3.00 O ATOM 373 N LEU 94 9.489 17.351 23.450 1.00 3.00 N ATOM 374 CA LEU 94 10.765 17.036 22.757 1.00 3.00 C ATOM 375 C LEU 94 12.009 17.466 23.582 1.00 3.00 C ATOM 376 O LEU 94 13.150 17.258 23.151 1.00 3.00 O ATOM 377 N PRO 95 11.771 18.071 24.765 1.00 3.00 N ATOM 378 CA PRO 95 12.834 18.441 25.737 1.00 3.00 C ATOM 379 C PRO 95 12.736 17.582 27.019 1.00 3.00 C ATOM 380 O PRO 95 13.501 17.790 27.967 1.00 3.00 O ATOM 381 N GLU 96 11.794 16.614 27.035 1.00 3.00 N ATOM 382 CA GLU 96 11.551 15.734 28.206 1.00 3.00 C ATOM 383 C GLU 96 12.746 14.797 28.465 1.00 3.00 C ATOM 384 O GLU 96 12.993 14.394 29.601 1.00 3.00 O ATOM 385 N LYS 97 13.479 14.454 27.391 1.00 3.00 N ATOM 386 CA LYS 97 14.673 13.581 27.475 1.00 3.00 C ATOM 387 C LYS 97 15.958 14.438 27.600 1.00 3.00 C ATOM 388 O LYS 97 17.076 13.904 27.609 1.00 3.00 O ATOM 389 N VAL 98 15.777 15.769 27.688 1.00 3.00 N ATOM 390 CA VAL 98 16.862 16.742 27.881 1.00 3.00 C ATOM 391 C VAL 98 16.914 17.149 29.369 1.00 3.00 C ATOM 392 O VAL 98 16.007 17.820 29.873 1.00 3.00 O ATOM 393 N HIS 99 17.946 16.670 30.071 1.00 3.00 N ATOM 394 CA HIS 99 18.213 16.993 31.488 1.00 3.00 C ATOM 395 C HIS 99 19.626 17.604 31.628 1.00 3.00 C ATOM 396 O HIS 99 20.394 17.649 30.654 1.00 3.00 O ATOM 397 N VAL 100 19.930 18.109 32.837 1.00 3.00 N ATOM 398 CA VAL 100 21.265 18.637 33.196 1.00 3.00 C ATOM 399 C VAL 100 22.332 17.503 33.136 1.00 3.00 C ATOM 400 O VAL 100 22.094 16.412 33.673 1.00 3.00 O ATOM 401 N PRO 101 23.493 17.724 32.430 1.00 3.00 N ATOM 402 CA PRO 101 24.702 16.841 32.529 1.00 3.00 C ATOM 403 C PRO 101 25.228 16.630 33.981 1.00 3.00 C ATOM 404 O PRO 101 24.630 17.131 34.936 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 404 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 46.89 80.0 200 100.0 200 ARMSMC SECONDARY STRUCTURE . . 22.30 95.3 128 100.0 128 ARMSMC SURFACE . . . . . . . . 52.61 76.6 128 100.0 128 ARMSMC BURIED . . . . . . . . 34.43 86.1 72 100.0 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 89 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 83 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 56 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 57 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 72 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 57 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.57 (Number of atoms: 101) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.57 101 100.0 101 CRMSCA CRN = ALL/NP . . . . . 0.0254 CRMSCA SECONDARY STRUCTURE . . 2.40 64 100.0 64 CRMSCA SURFACE . . . . . . . . 2.59 65 100.0 65 CRMSCA BURIED . . . . . . . . 2.53 36 100.0 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.48 404 80.5 502 CRMSMC SECONDARY STRUCTURE . . 2.28 256 80.5 318 CRMSMC SURFACE . . . . . . . . 2.53 260 80.7 322 CRMSMC BURIED . . . . . . . . 2.37 144 80.0 180 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 439 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 387 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 307 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 278 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 161 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.48 404 47.9 843 CRMSALL SECONDARY STRUCTURE . . 2.28 256 45.5 563 CRMSALL SURFACE . . . . . . . . 2.53 260 48.3 538 CRMSALL BURIED . . . . . . . . 2.37 144 47.2 305 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.624 0.330 0.360 101 100.0 101 ERRCA SECONDARY STRUCTURE . . 1.779 0.376 0.416 64 100.0 64 ERRCA SURFACE . . . . . . . . 1.668 0.333 0.364 65 100.0 65 ERRCA BURIED . . . . . . . . 1.545 0.325 0.352 36 100.0 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.634 0.337 0.368 404 80.5 502 ERRMC SECONDARY STRUCTURE . . 1.785 0.384 0.427 256 80.5 318 ERRMC SURFACE . . . . . . . . 1.709 0.343 0.376 260 80.7 322 ERRMC BURIED . . . . . . . . 1.498 0.327 0.354 144 80.0 180 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 439 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 387 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 307 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 278 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 161 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.634 0.337 0.368 404 47.9 843 ERRALL SECONDARY STRUCTURE . . 1.785 0.384 0.427 256 45.5 563 ERRALL SURFACE . . . . . . . . 1.709 0.343 0.376 260 48.3 538 ERRALL BURIED . . . . . . . . 1.498 0.327 0.354 144 47.2 305 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 18 64 86 94 101 101 101 DISTCA CA (P) 17.82 63.37 85.15 93.07 100.00 101 DISTCA CA (RMS) 0.75 1.35 1.66 1.90 2.57 DISTCA ALL (N) 84 266 349 381 403 404 843 DISTALL ALL (P) 9.96 31.55 41.40 45.20 47.81 843 DISTALL ALL (RMS) 0.75 1.35 1.66 1.93 2.43 DISTALL END of the results output