####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 89 ( 356), selected 89 , name T0619AL396_1-D1 # Molecule2: number of CA atoms 101 ( 843), selected 89 , name T0619-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0619AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 89 2 - 98 2.52 2.52 LCS_AVERAGE: 88.12 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 56 2 - 58 1.99 2.62 LCS_AVERAGE: 45.30 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 3 - 32 0.97 3.41 LCS_AVERAGE: 21.98 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 89 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 2 S 2 15 56 89 8 15 35 47 52 71 81 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT P 3 P 3 30 56 89 11 33 45 56 74 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 4 R 4 30 56 89 8 33 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 5 E 5 30 56 89 9 19 43 56 75 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 6 A 6 30 56 89 9 32 46 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 7 R 7 30 56 89 11 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 8 D 8 30 56 89 11 36 46 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 9 R 9 30 56 89 11 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT Y 10 Y 10 30 56 89 11 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 11 L 11 30 56 89 12 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 12 A 12 30 56 89 12 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT H 13 H 13 30 56 89 9 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 14 R 14 30 56 89 3 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT Q 15 Q 15 30 56 89 9 36 46 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT T 16 T 16 30 56 89 0 3 14 23 46 66 82 83 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 17 D 17 30 56 89 11 34 46 66 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 18 A 18 30 56 89 12 29 45 61 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 19 A 19 30 56 89 5 36 46 66 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 20 D 20 30 56 89 5 36 46 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 21 A 21 30 56 89 12 36 46 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT S 22 S 22 30 56 89 12 36 46 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT I 23 I 23 30 56 89 12 36 47 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT K 24 K 24 30 56 89 12 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT S 25 S 25 30 56 89 14 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT F 26 F 26 30 56 89 14 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 27 R 27 30 56 89 12 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT Y 28 Y 28 30 56 89 12 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 29 R 29 30 56 89 12 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 30 L 30 30 56 89 12 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT K 31 K 31 30 56 89 12 36 46 66 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT H 32 H 32 30 56 89 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT F 33 F 33 28 56 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT V 34 V 34 25 56 89 11 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 35 E 35 25 56 89 13 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT W 36 W 36 25 56 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 37 A 37 25 56 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 38 E 38 25 56 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 39 E 39 25 56 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 40 R 40 25 56 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 41 D 41 25 56 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT T 43 T 43 17 56 89 3 4 5 5 25 43 66 78 83 85 86 86 88 88 88 89 89 89 89 89 LCS_GDT A 44 A 44 15 56 89 4 4 8 25 62 73 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT M 45 M 45 15 56 89 4 19 43 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 46 R 46 15 56 89 4 15 39 67 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 47 E 47 15 56 89 8 24 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 48 L 48 15 56 89 11 24 44 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT T 49 T 49 15 56 89 11 24 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT G 50 G 50 15 56 89 11 15 41 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT W 51 W 51 15 56 89 11 26 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT K 52 K 52 15 56 89 11 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 53 L 53 15 56 89 11 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 54 D 54 15 56 89 11 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 55 E 55 15 56 89 11 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT Y 56 Y 56 15 56 89 11 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 57 E 57 15 56 89 15 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT T 58 T 58 15 56 89 11 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT S 66 S 66 3 3 89 0 3 3 3 3 8 14 25 55 60 64 73 83 87 88 89 89 89 89 89 LCS_GDT P 67 P 67 3 4 89 5 9 10 19 43 47 52 65 78 84 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 68 A 68 3 29 89 0 3 3 17 43 47 58 70 78 84 87 87 88 88 88 89 89 89 89 89 LCS_GDT T 69 T 69 23 30 89 14 36 46 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 70 L 70 23 30 89 11 21 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT N 71 N 71 23 30 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT G 72 G 72 23 30 89 11 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 73 E 73 23 30 89 14 33 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT M 74 M 74 23 30 89 11 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT Q 75 Q 75 23 30 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT T 76 T 76 23 30 89 11 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 77 L 77 23 30 89 14 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT K 78 K 78 23 30 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT N 79 N 79 23 30 89 15 31 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT W 80 W 80 23 30 89 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 81 L 81 23 30 89 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 82 E 82 23 30 89 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT Y 83 Y 83 23 30 89 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 84 L 84 23 30 89 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT A 85 A 85 23 30 89 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT R 86 R 86 23 30 89 14 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT I 87 I 87 23 30 89 14 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 88 D 88 23 30 89 14 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT V 89 V 89 23 30 89 10 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT V 90 V 90 23 30 89 6 36 46 67 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 91 D 91 23 30 89 3 20 46 55 74 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 92 E 92 17 30 89 3 4 11 60 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT D 93 D 93 6 30 89 4 4 13 25 44 64 79 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT L 94 L 94 6 30 89 4 4 35 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT P 95 P 95 6 30 89 4 4 8 57 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT E 96 E 96 6 30 89 11 29 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT K 97 K 97 6 30 89 3 10 22 36 72 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_GDT V 98 V 98 6 30 89 3 6 25 66 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 LCS_AVERAGE LCS_A: 51.80 ( 21.98 45.30 88.12 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 36 48 68 76 81 82 84 85 85 87 87 88 88 88 89 89 89 89 89 GDT PERCENT_AT 14.85 35.64 47.52 67.33 75.25 80.20 81.19 83.17 84.16 84.16 86.14 86.14 87.13 87.13 87.13 88.12 88.12 88.12 88.12 88.12 GDT RMS_LOCAL 0.31 0.68 1.05 1.36 1.53 1.63 1.67 1.77 1.82 1.82 2.17 2.17 2.25 2.25 2.25 2.52 2.52 2.52 2.52 2.52 GDT RMS_ALL_AT 3.02 2.95 2.67 2.63 2.58 2.58 2.59 2.59 2.58 2.58 2.53 2.53 2.53 2.53 2.53 2.52 2.52 2.52 2.52 2.52 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 2 S 2 4.068 2 0.530 0.530 4.851 42.143 28.095 LGA P 3 P 3 2.806 3 0.110 0.110 3.187 65.357 37.347 LGA R 4 R 4 1.276 7 0.109 0.109 1.804 77.143 28.052 LGA E 5 E 5 2.338 5 0.039 0.039 2.338 66.786 29.683 LGA A 6 A 6 1.821 1 0.037 0.037 1.992 77.143 61.714 LGA R 7 R 7 1.308 7 0.102 0.102 1.380 81.429 29.610 LGA D 8 D 8 1.440 4 0.114 0.114 1.440 81.429 40.714 LGA R 9 R 9 1.217 7 0.107 0.107 1.344 85.952 31.255 LGA Y 10 Y 10 0.875 8 0.032 0.032 1.068 88.214 29.405 LGA L 11 L 11 1.213 4 0.044 0.044 1.501 81.548 40.774 LGA A 12 A 12 1.300 1 0.077 0.077 1.362 81.429 65.143 LGA H 13 H 13 1.176 6 0.152 0.152 1.176 83.690 33.476 LGA R 14 R 14 1.358 7 0.256 0.256 2.374 75.119 27.316 LGA Q 15 Q 15 1.897 5 0.336 0.336 3.110 69.286 30.794 LGA T 16 T 16 4.464 3 0.280 0.280 4.749 35.833 20.476 LGA D 17 D 17 2.709 4 0.608 0.608 2.873 65.000 32.500 LGA A 18 A 18 2.994 1 0.304 0.304 4.578 45.476 36.381 LGA A 19 A 19 2.182 1 0.045 0.045 2.182 68.810 55.048 LGA D 20 D 20 1.735 4 0.083 0.083 1.831 75.000 37.500 LGA A 21 A 21 1.661 1 0.222 0.222 1.664 72.857 58.286 LGA S 22 S 22 1.930 2 0.109 0.109 1.930 75.000 50.000 LGA I 23 I 23 1.339 4 0.044 0.044 1.552 79.286 39.643 LGA K 24 K 24 1.287 5 0.018 0.018 1.339 81.429 36.190 LGA S 25 S 25 1.397 2 0.120 0.120 1.471 81.429 54.286 LGA F 26 F 26 1.119 7 0.068 0.068 1.182 83.690 30.433 LGA R 27 R 27 1.206 7 0.114 0.114 1.695 79.405 28.874 LGA Y 28 Y 28 1.749 8 0.112 0.112 2.252 70.833 23.611 LGA R 29 R 29 1.661 7 0.009 0.009 1.741 72.857 26.494 LGA L 30 L 30 1.416 4 0.096 0.096 1.680 77.143 38.571 LGA K 31 K 31 2.176 5 0.056 0.056 2.176 70.833 31.481 LGA H 32 H 32 1.443 6 0.143 0.143 1.567 79.286 31.714 LGA F 33 F 33 0.254 7 0.087 0.087 0.779 95.238 34.632 LGA V 34 V 34 1.635 3 0.084 0.084 1.635 77.143 44.082 LGA E 35 E 35 1.143 5 0.107 0.107 1.297 81.429 36.190 LGA W 36 W 36 0.479 10 0.058 0.058 0.967 92.857 26.531 LGA A 37 A 37 1.404 1 0.037 0.037 1.806 77.143 61.714 LGA E 38 E 38 1.858 5 0.116 0.116 2.288 70.833 31.481 LGA E 39 E 39 1.323 5 0.102 0.102 1.408 81.429 36.190 LGA R 40 R 40 1.644 7 0.063 0.063 2.138 70.833 25.758 LGA D 41 D 41 2.296 4 0.446 0.446 2.296 75.238 37.619 LGA T 43 T 43 5.814 3 0.628 0.628 6.035 24.048 13.741 LGA A 44 A 44 3.896 1 0.133 0.133 4.164 48.690 38.952 LGA M 45 M 45 1.687 4 0.117 0.117 2.422 72.976 36.488 LGA R 46 R 46 2.084 7 0.066 0.066 2.084 72.976 26.537 LGA E 47 E 47 0.663 5 0.043 0.043 1.152 88.214 39.206 LGA L 48 L 48 1.608 4 0.051 0.051 2.076 72.976 36.488 LGA T 49 T 49 1.258 3 0.033 0.033 1.342 81.429 46.531 LGA G 50 G 50 1.909 0 0.097 0.097 1.955 72.857 72.857 LGA W 51 W 51 2.005 10 0.027 0.027 2.005 70.833 20.238 LGA K 52 K 52 1.362 5 0.148 0.148 1.547 79.286 35.238 LGA L 53 L 53 1.303 4 0.022 0.022 1.365 81.429 40.714 LGA D 54 D 54 1.781 4 0.073 0.073 2.133 70.833 35.417 LGA E 55 E 55 2.095 5 0.120 0.120 2.494 68.810 30.582 LGA Y 56 Y 56 1.402 8 0.024 0.024 1.531 79.286 26.429 LGA E 57 E 57 1.792 5 0.072 0.072 2.089 70.833 31.481 LGA T 58 T 58 2.158 3 0.077 0.077 2.223 66.786 38.163 LGA S 66 S 66 11.684 2 0.116 0.116 11.684 0.833 0.556 LGA P 67 P 67 8.683 3 0.538 0.538 9.786 3.810 2.177 LGA A 68 A 68 8.080 1 0.492 0.492 9.401 4.524 3.619 LGA T 69 T 69 1.772 3 0.597 0.597 3.893 69.762 39.864 LGA L 70 L 70 1.442 4 0.062 0.062 1.442 81.429 40.714 LGA N 71 N 71 1.265 4 0.073 0.073 1.265 83.690 41.845 LGA G 72 G 72 1.416 0 0.191 0.191 1.416 81.429 81.429 LGA E 73 E 73 0.947 5 0.024 0.024 0.969 90.476 40.212 LGA M 74 M 74 0.960 4 0.108 0.108 1.054 88.214 44.107 LGA Q 75 Q 75 1.649 5 0.152 0.152 1.649 79.286 35.238 LGA T 76 T 76 1.501 3 0.034 0.034 1.501 79.286 45.306 LGA L 77 L 77 0.645 4 0.079 0.079 0.801 90.476 45.238 LGA K 78 K 78 0.697 5 0.050 0.050 0.775 90.476 40.212 LGA N 79 N 79 1.079 4 0.071 0.071 1.079 88.214 44.107 LGA W 80 W 80 0.945 10 0.101 0.101 1.016 88.214 25.204 LGA L 81 L 81 0.229 4 0.096 0.096 0.418 100.000 50.000 LGA E 82 E 82 0.287 5 0.073 0.073 0.535 97.619 43.386 LGA Y 83 Y 83 0.644 8 0.061 0.061 0.644 92.857 30.952 LGA L 84 L 84 0.708 4 0.100 0.100 0.717 90.476 45.238 LGA A 85 A 85 0.476 1 0.111 0.111 0.672 97.619 78.095 LGA R 86 R 86 0.181 7 0.032 0.032 0.451 100.000 36.364 LGA I 87 I 87 0.303 4 0.084 0.084 1.014 92.976 46.488 LGA D 88 D 88 0.749 4 0.101 0.101 1.217 88.214 44.107 LGA V 89 V 89 1.243 3 0.088 0.088 2.250 77.381 44.218 LGA V 90 V 90 2.081 3 0.097 0.097 2.081 70.952 40.544 LGA D 91 D 91 2.856 4 0.629 0.629 3.825 55.595 27.798 LGA E 92 E 92 2.331 5 0.730 0.730 4.490 57.976 25.767 LGA D 93 D 93 4.059 4 0.390 0.390 4.059 52.143 26.071 LGA L 94 L 94 1.943 4 0.148 0.148 2.600 66.905 33.452 LGA P 95 P 95 2.750 3 0.147 0.147 2.750 66.905 38.231 LGA E 96 E 96 0.890 5 0.124 0.124 2.267 79.524 35.344 LGA K 97 K 97 3.084 5 0.218 0.218 4.861 51.071 22.698 LGA V 98 V 98 2.586 3 0.641 0.641 2.938 60.952 34.830 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 89 356 356 100.00 745 356 47.79 101 SUMMARY(RMSD_GDC): 2.524 2.465 2.465 64.698 32.490 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 89 101 4.0 84 1.77 68.564 66.206 4.486 LGA_LOCAL RMSD: 1.773 Number of atoms: 84 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.585 Number of assigned atoms: 89 Std_ASGN_ATOMS RMSD: 2.524 Standard rmsd on all 89 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.251333 * X + -0.919771 * Y + -0.301417 * Z + -27.549681 Y_new = -0.963113 * X + 0.268590 * Y + -0.016519 * Z + 57.783779 Z_new = 0.096152 * X + 0.286147 * Y + -0.953349 * Z + 71.804802 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.826062 -0.096300 2.849999 [DEG: -104.6257 -5.5176 163.2929 ] ZXZ: -1.516045 2.834939 0.324168 [DEG: -86.8630 162.4301 18.5735 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0619AL396_1-D1 REMARK 2: T0619-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0619AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 89 101 4.0 84 1.77 66.206 2.52 REMARK ---------------------------------------------------------- MOLECULE T0619AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1a0p ATOM 1 N SER 2 4.749 35.399 16.996 1.00 0.00 N ATOM 2 CA SER 2 3.815 34.335 17.460 1.00 0.00 C ATOM 3 C SER 2 4.474 33.504 18.553 1.00 0.00 C ATOM 4 O SER 2 3.958 33.560 19.692 1.00 0.00 O ATOM 5 N PRO 3 5.713 33.040 18.369 1.00 0.00 N ATOM 6 CA PRO 3 6.381 32.291 19.415 1.00 0.00 C ATOM 7 C PRO 3 6.688 33.106 20.665 1.00 0.00 C ATOM 8 O PRO 3 6.693 32.496 21.756 1.00 0.00 O ATOM 9 N ARG 4 6.941 34.410 20.504 1.00 0.00 N ATOM 10 CA ARG 4 7.202 35.208 21.701 1.00 0.00 C ATOM 11 C ARG 4 5.916 35.469 22.477 1.00 0.00 C ATOM 12 O ARG 4 5.970 35.693 23.680 1.00 0.00 O ATOM 13 N GLU 5 4.806 35.592 21.770 1.00 0.00 N ATOM 14 CA GLU 5 3.484 35.656 22.397 1.00 0.00 C ATOM 15 C GLU 5 3.190 34.355 23.169 1.00 0.00 C ATOM 16 O GLU 5 2.827 34.394 24.365 1.00 0.00 O ATOM 17 N ALA 6 3.587 33.208 22.562 1.00 0.00 N ATOM 18 CA ALA 6 3.479 31.901 23.161 1.00 0.00 C ATOM 19 C ALA 6 4.283 31.827 24.429 1.00 0.00 C ATOM 20 O ALA 6 3.790 31.221 25.407 1.00 0.00 O ATOM 21 N ARG 7 5.311 32.607 24.585 1.00 0.00 N ATOM 22 CA ARG 7 5.946 32.661 25.902 1.00 0.00 C ATOM 23 C ARG 7 5.206 33.569 26.859 1.00 0.00 C ATOM 24 O ARG 7 5.194 33.254 28.044 1.00 0.00 O ATOM 25 N ASP 8 4.595 34.653 26.362 1.00 0.00 N ATOM 26 CA ASP 8 3.866 35.494 27.306 1.00 0.00 C ATOM 27 C ASP 8 2.649 34.713 27.798 1.00 0.00 C ATOM 28 O ASP 8 2.612 34.600 29.022 1.00 0.00 O ATOM 29 N ARG 9 1.986 33.993 26.876 1.00 0.00 N ATOM 30 CA ARG 9 0.889 33.118 27.298 1.00 0.00 C ATOM 31 C ARG 9 1.343 32.078 28.295 1.00 0.00 C ATOM 32 O ARG 9 0.794 32.144 29.412 1.00 0.00 O ATOM 33 N TYR 10 2.535 31.499 28.139 1.00 0.00 N ATOM 34 CA TYR 10 2.984 30.529 29.133 1.00 0.00 C ATOM 35 C TYR 10 3.217 31.178 30.469 1.00 0.00 C ATOM 36 O TYR 10 2.853 30.606 31.538 1.00 0.00 O ATOM 37 N LEU 11 3.862 32.339 30.500 1.00 0.00 N ATOM 38 CA LEU 11 4.264 32.918 31.798 1.00 0.00 C ATOM 39 C LEU 11 2.990 33.329 32.558 1.00 0.00 C ATOM 40 O LEU 11 2.894 33.253 33.787 1.00 0.00 O ATOM 41 N ALA 12 2.037 33.835 31.759 1.00 0.00 N ATOM 42 CA ALA 12 0.704 34.195 32.201 1.00 0.00 C ATOM 43 C ALA 12 0.015 33.041 32.905 1.00 0.00 C ATOM 44 O ALA 12 -0.433 33.193 34.046 1.00 0.00 O ATOM 45 N HIS 13 0.006 31.906 32.169 1.00 0.00 N ATOM 46 CA HIS 13 -0.550 30.685 32.787 1.00 0.00 C ATOM 47 C HIS 13 0.344 30.269 33.942 1.00 0.00 C ATOM 48 O HIS 13 -0.148 30.255 35.072 1.00 0.00 O ATOM 49 N ARG 14 1.667 30.419 33.771 1.00 0.00 N ATOM 50 CA ARG 14 2.517 30.112 34.944 1.00 0.00 C ATOM 51 C ARG 14 2.075 31.018 36.083 1.00 0.00 C ATOM 52 O ARG 14 1.627 30.548 37.119 1.00 0.00 O ATOM 53 N GLN 15 2.117 32.341 35.891 1.00 0.00 N ATOM 54 CA GLN 15 1.720 33.281 36.946 1.00 0.00 C ATOM 55 C GLN 15 0.325 32.985 37.495 1.00 0.00 C ATOM 56 O GLN 15 0.184 32.996 38.722 1.00 0.00 O ATOM 57 N THR 16 -0.515 30.701 41.221 1.00 0.00 N ATOM 58 CA THR 16 -0.067 31.364 42.418 1.00 0.00 C ATOM 59 C THR 16 1.294 30.809 42.847 1.00 0.00 C ATOM 60 O THR 16 1.697 30.779 44.000 1.00 0.00 O ATOM 61 N ASP 17 2.110 30.629 41.819 1.00 0.00 N ATOM 62 CA ASP 17 3.324 29.848 41.876 1.00 0.00 C ATOM 63 C ASP 17 4.515 30.716 41.499 1.00 0.00 C ATOM 64 O ASP 17 4.343 31.737 40.841 1.00 0.00 O ATOM 65 N ALA 18 5.711 30.222 41.788 1.00 0.00 N ATOM 66 CA ALA 18 6.946 30.841 41.344 1.00 0.00 C ATOM 67 C ALA 18 7.162 32.256 41.860 1.00 0.00 C ATOM 68 O ALA 18 7.108 32.515 43.072 1.00 0.00 O ATOM 69 N ALA 19 7.599 33.177 41.006 1.00 0.00 N ATOM 70 CA ALA 19 7.981 34.511 41.475 1.00 0.00 C ATOM 71 C ALA 19 8.302 35.353 40.259 1.00 0.00 C ATOM 72 O ALA 19 8.759 34.788 39.255 1.00 0.00 O ATOM 73 N ASP 20 8.142 36.676 40.326 1.00 0.00 N ATOM 74 CA ASP 20 8.386 37.492 39.135 1.00 0.00 C ATOM 75 C ASP 20 9.835 37.385 38.695 1.00 0.00 C ATOM 76 O ASP 20 10.154 37.640 37.548 1.00 0.00 O ATOM 77 N ALA 21 10.717 37.150 39.649 1.00 0.00 N ATOM 78 CA ALA 21 12.057 36.684 39.456 1.00 0.00 C ATOM 79 C ALA 21 12.099 35.462 38.531 1.00 0.00 C ATOM 80 O ALA 21 12.366 35.528 37.327 1.00 0.00 O ATOM 81 N SER 22 11.705 34.326 39.142 1.00 0.00 N ATOM 82 CA SER 22 11.778 33.056 38.427 1.00 0.00 C ATOM 83 C SER 22 11.005 33.160 37.126 1.00 0.00 C ATOM 84 O SER 22 11.645 32.991 36.080 1.00 0.00 O ATOM 85 N ILE 23 9.935 33.948 37.090 1.00 0.00 N ATOM 86 CA ILE 23 9.239 34.276 35.854 1.00 0.00 C ATOM 87 C ILE 23 10.039 35.018 34.829 1.00 0.00 C ATOM 88 O ILE 23 10.028 34.683 33.652 1.00 0.00 O ATOM 89 N LYS 24 10.869 35.960 35.242 1.00 0.00 N ATOM 90 CA LYS 24 11.591 36.842 34.313 1.00 0.00 C ATOM 91 C LYS 24 12.883 36.122 33.925 1.00 0.00 C ATOM 92 O LYS 24 13.236 36.153 32.739 1.00 0.00 O ATOM 93 N SER 25 13.345 35.312 34.891 1.00 0.00 N ATOM 94 CA SER 25 14.421 34.362 34.532 1.00 0.00 C ATOM 95 C SER 25 13.925 33.403 33.441 1.00 0.00 C ATOM 96 O SER 25 14.441 33.472 32.293 1.00 0.00 O ATOM 97 N PHE 26 12.679 32.927 33.536 1.00 0.00 N ATOM 98 CA PHE 26 12.073 32.234 32.412 1.00 0.00 C ATOM 99 C PHE 26 11.854 33.110 31.206 1.00 0.00 C ATOM 100 O PHE 26 12.071 32.562 30.100 1.00 0.00 O ATOM 101 N ARG 27 11.399 34.368 31.338 1.00 0.00 N ATOM 102 CA ARG 27 11.144 35.093 30.053 1.00 0.00 C ATOM 103 C ARG 27 12.433 35.134 29.237 1.00 0.00 C ATOM 104 O ARG 27 12.521 35.171 28.028 1.00 0.00 O ATOM 105 N TYR 28 13.452 35.558 29.947 1.00 0.00 N ATOM 106 CA TYR 28 14.838 35.629 29.562 1.00 0.00 C ATOM 107 C TYR 28 15.332 34.382 28.836 1.00 0.00 C ATOM 108 O TYR 28 15.674 34.388 27.631 1.00 0.00 O ATOM 109 N ARG 29 15.343 33.277 29.584 1.00 0.00 N ATOM 110 CA ARG 29 15.849 32.006 29.066 1.00 0.00 C ATOM 111 C ARG 29 15.109 31.522 27.833 1.00 0.00 C ATOM 112 O ARG 29 15.731 31.127 26.844 1.00 0.00 O ATOM 113 N LEU 30 13.781 31.663 27.833 1.00 0.00 N ATOM 114 CA LEU 30 12.970 31.203 26.704 1.00 0.00 C ATOM 115 C LEU 30 13.126 32.094 25.482 1.00 0.00 C ATOM 116 O LEU 30 13.117 31.606 24.338 1.00 0.00 O ATOM 117 N LYS 31 13.288 33.404 25.698 1.00 0.00 N ATOM 118 CA LYS 31 13.500 34.368 24.613 1.00 0.00 C ATOM 119 C LYS 31 14.880 34.242 23.971 1.00 0.00 C ATOM 120 O LYS 31 14.952 34.200 22.736 1.00 0.00 O ATOM 121 N HIS 32 15.908 33.958 24.779 1.00 0.00 N ATOM 122 CA HIS 32 17.182 33.557 24.123 1.00 0.00 C ATOM 123 C HIS 32 16.941 32.294 23.292 1.00 0.00 C ATOM 124 O HIS 32 17.050 32.320 22.065 1.00 0.00 O ATOM 125 N PHE 33 16.375 31.260 23.944 1.00 0.00 N ATOM 126 CA PHE 33 15.917 30.062 23.274 1.00 0.00 C ATOM 127 C PHE 33 15.090 30.276 22.024 1.00 0.00 C ATOM 128 O PHE 33 15.542 29.762 20.998 1.00 0.00 O ATOM 129 N VAL 34 14.110 31.173 21.927 1.00 0.00 N ATOM 130 CA VAL 34 13.462 31.303 20.620 1.00 0.00 C ATOM 131 C VAL 34 14.310 32.091 19.633 1.00 0.00 C ATOM 132 O VAL 34 14.251 31.840 18.421 1.00 0.00 O ATOM 133 N GLU 35 15.138 33.012 20.133 1.00 0.00 N ATOM 134 CA GLU 35 16.103 33.704 19.276 1.00 0.00 C ATOM 135 C GLU 35 16.954 32.632 18.591 1.00 0.00 C ATOM 136 O GLU 35 17.006 32.452 17.386 1.00 0.00 O ATOM 137 N TRP 36 17.554 31.852 19.482 1.00 0.00 N ATOM 138 CA TRP 36 18.456 30.764 19.171 1.00 0.00 C ATOM 139 C TRP 36 17.864 29.849 18.114 1.00 0.00 C ATOM 140 O TRP 36 18.424 29.685 17.042 1.00 0.00 O ATOM 141 N ALA 37 16.643 29.385 18.400 1.00 0.00 N ATOM 142 CA ALA 37 15.960 28.480 17.500 1.00 0.00 C ATOM 143 C ALA 37 15.635 29.137 16.169 1.00 0.00 C ATOM 144 O ALA 37 15.728 28.513 15.112 1.00 0.00 O ATOM 145 N GLU 38 15.128 30.361 16.232 1.00 0.00 N ATOM 146 CA GLU 38 14.708 31.038 15.001 1.00 0.00 C ATOM 147 C GLU 38 15.901 31.263 14.076 1.00 0.00 C ATOM 148 O GLU 38 15.954 30.700 12.963 1.00 0.00 O ATOM 149 N GLU 39 17.019 31.701 14.663 1.00 0.00 N ATOM 150 CA GLU 39 18.308 31.716 13.996 1.00 0.00 C ATOM 151 C GLU 39 18.616 30.368 13.350 1.00 0.00 C ATOM 152 O GLU 39 19.092 30.411 12.208 1.00 0.00 O ATOM 153 N ARG 40 18.379 29.227 13.988 1.00 0.00 N ATOM 154 CA ARG 40 18.648 27.934 13.378 1.00 0.00 C ATOM 155 C ARG 40 17.589 27.472 12.393 1.00 0.00 C ATOM 156 O ARG 40 17.691 26.335 11.902 1.00 0.00 O ATOM 157 N ASP 41 16.616 28.301 12.042 1.00 0.00 N ATOM 158 CA ASP 41 15.564 27.969 11.093 1.00 0.00 C ATOM 159 C ASP 41 14.255 27.593 11.813 1.00 0.00 C ATOM 160 O ASP 41 13.180 28.181 11.648 1.00 0.00 O ATOM 161 N THR 43 14.411 26.720 12.785 1.00 0.00 N ATOM 162 CA THR 43 13.516 26.237 13.777 1.00 0.00 C ATOM 163 C THR 43 12.526 27.201 14.434 1.00 0.00 C ATOM 164 O THR 43 12.535 28.420 14.367 1.00 0.00 O ATOM 165 N ALA 44 11.564 26.570 15.109 1.00 0.00 N ATOM 166 CA ALA 44 10.425 27.280 15.687 1.00 0.00 C ATOM 167 C ALA 44 9.886 26.671 16.941 1.00 0.00 C ATOM 168 O ALA 44 10.297 25.563 17.293 1.00 0.00 O ATOM 169 N MET 45 8.933 27.274 17.645 1.00 0.00 N ATOM 170 CA MET 45 8.439 26.572 18.863 1.00 0.00 C ATOM 171 C MET 45 7.843 25.242 18.413 1.00 0.00 C ATOM 172 O MET 45 8.140 24.219 19.001 1.00 0.00 O ATOM 173 N ARG 46 7.098 25.238 17.325 1.00 0.00 N ATOM 174 CA ARG 46 6.454 24.117 16.761 1.00 0.00 C ATOM 175 C ARG 46 7.390 22.991 16.340 1.00 0.00 C ATOM 176 O ARG 46 6.815 21.902 16.205 1.00 0.00 O ATOM 177 N GLU 47 8.611 23.282 15.869 1.00 0.00 N ATOM 178 CA GLU 47 9.393 22.228 15.212 1.00 0.00 C ATOM 179 C GLU 47 10.684 21.888 15.939 1.00 0.00 C ATOM 180 O GLU 47 11.327 20.904 15.568 1.00 0.00 O ATOM 181 N LEU 48 11.086 22.742 16.872 1.00 0.00 N ATOM 182 CA LEU 48 12.346 22.456 17.542 1.00 0.00 C ATOM 183 C LEU 48 12.261 21.023 18.072 1.00 0.00 C ATOM 184 O LEU 48 11.246 20.616 18.595 1.00 0.00 O ATOM 185 N THR 49 13.326 20.240 17.891 1.00 0.00 N ATOM 186 CA THR 49 13.353 18.874 18.375 1.00 0.00 C ATOM 187 C THR 49 14.192 18.718 19.601 1.00 0.00 C ATOM 188 O THR 49 14.931 19.624 19.991 1.00 0.00 O ATOM 189 N GLY 50 14.114 17.560 20.245 1.00 0.00 N ATOM 190 CA GLY 50 14.911 17.321 21.452 1.00 0.00 C ATOM 191 C GLY 50 16.415 17.502 21.260 1.00 0.00 C ATOM 192 O GLY 50 17.175 17.730 22.218 1.00 0.00 O ATOM 193 N TRP 51 16.905 17.192 20.059 1.00 0.00 N ATOM 194 CA TRP 51 18.303 17.334 19.679 1.00 0.00 C ATOM 195 C TRP 51 18.767 18.783 19.565 1.00 0.00 C ATOM 196 O TRP 51 19.800 19.203 20.109 1.00 0.00 O ATOM 197 N LYS 52 17.828 19.543 19.003 1.00 0.00 N ATOM 198 CA LYS 52 17.904 20.998 18.943 1.00 0.00 C ATOM 199 C LYS 52 17.952 21.551 20.358 1.00 0.00 C ATOM 200 O LYS 52 18.968 22.120 20.763 1.00 0.00 O ATOM 201 N LEU 53 17.101 20.988 21.240 1.00 0.00 N ATOM 202 CA LEU 53 17.092 21.448 22.623 1.00 0.00 C ATOM 203 C LEU 53 18.324 20.941 23.329 1.00 0.00 C ATOM 204 O LEU 53 18.887 21.669 24.154 1.00 0.00 O ATOM 205 N ASP 54 18.789 19.741 23.015 1.00 0.00 N ATOM 206 CA ASP 54 20.030 19.243 23.624 1.00 0.00 C ATOM 207 C ASP 54 21.242 20.107 23.233 1.00 0.00 C ATOM 208 O ASP 54 22.016 20.548 24.074 1.00 0.00 O ATOM 209 N GLU 55 21.384 20.421 21.949 1.00 0.00 N ATOM 210 CA GLU 55 22.342 21.435 21.521 1.00 0.00 C ATOM 211 C GLU 55 22.278 22.709 22.346 1.00 0.00 C ATOM 212 O GLU 55 23.201 23.023 23.110 1.00 0.00 O ATOM 213 N TYR 56 21.246 23.527 22.248 1.00 0.00 N ATOM 214 CA TYR 56 21.077 24.786 22.953 1.00 0.00 C ATOM 215 C TYR 56 21.670 24.806 24.350 1.00 0.00 C ATOM 216 O TYR 56 22.356 25.732 24.768 1.00 0.00 O ATOM 217 N GLU 57 21.270 23.833 25.156 1.00 0.00 N ATOM 218 CA GLU 57 21.674 23.620 26.523 1.00 0.00 C ATOM 219 C GLU 57 23.185 23.459 26.690 1.00 0.00 C ATOM 220 O GLU 57 23.788 23.847 27.690 1.00 0.00 O ATOM 221 N THR 58 23.777 22.724 25.768 1.00 0.00 N ATOM 222 CA THR 58 25.203 22.587 25.571 1.00 0.00 C ATOM 223 C THR 58 25.846 23.919 25.181 1.00 0.00 C ATOM 224 O THR 58 26.823 24.294 25.834 1.00 0.00 O ATOM 225 N SER 66 25.313 24.631 24.190 1.00 0.00 N ATOM 226 CA SER 66 25.758 26.005 23.939 1.00 0.00 C ATOM 227 C SER 66 25.707 26.734 25.288 1.00 0.00 C ATOM 228 O SER 66 24.744 26.763 26.058 1.00 0.00 O ATOM 229 N PRO 67 26.850 27.201 25.732 1.00 0.00 N ATOM 230 CA PRO 67 27.444 27.149 27.020 1.00 0.00 C ATOM 231 C PRO 67 26.573 26.920 28.246 1.00 0.00 C ATOM 232 O PRO 67 25.578 27.529 28.599 1.00 0.00 O ATOM 233 N ALA 68 27.187 26.096 29.090 1.00 0.00 N ATOM 234 CA ALA 68 26.836 25.795 30.462 1.00 0.00 C ATOM 235 C ALA 68 26.106 24.448 30.458 1.00 0.00 C ATOM 236 O ALA 68 26.697 23.575 29.797 1.00 0.00 O ATOM 237 N THR 69 22.684 29.502 33.380 1.00 0.00 N ATOM 238 CA THR 69 22.723 28.269 34.166 1.00 0.00 C ATOM 239 C THR 69 21.942 27.163 33.466 1.00 0.00 C ATOM 240 O THR 69 20.751 27.278 33.181 1.00 0.00 O ATOM 241 N LEU 70 22.616 26.034 33.213 1.00 0.00 N ATOM 242 CA LEU 70 21.932 24.932 32.530 1.00 0.00 C ATOM 243 C LEU 70 20.704 24.491 33.326 1.00 0.00 C ATOM 244 O LEU 70 19.633 24.400 32.706 1.00 0.00 O ATOM 245 N ASN 71 20.772 24.431 34.658 1.00 0.00 N ATOM 246 CA ASN 71 19.610 24.041 35.432 1.00 0.00 C ATOM 247 C ASN 71 18.409 24.948 35.152 1.00 0.00 C ATOM 248 O ASN 71 17.366 24.441 34.726 1.00 0.00 O ATOM 249 N GLY 72 18.554 26.247 35.412 1.00 0.00 N ATOM 250 CA GLY 72 17.458 27.179 35.205 1.00 0.00 C ATOM 251 C GLY 72 16.984 27.172 33.756 1.00 0.00 C ATOM 252 O GLY 72 15.822 26.758 33.524 1.00 0.00 O ATOM 253 N GLU 73 17.903 27.244 32.800 1.00 0.00 N ATOM 254 CA GLU 73 17.518 27.094 31.401 1.00 0.00 C ATOM 255 C GLU 73 16.793 25.782 31.144 1.00 0.00 C ATOM 256 O GLU 73 15.794 25.779 30.430 1.00 0.00 O ATOM 257 N MET 74 17.217 24.662 31.706 1.00 0.00 N ATOM 258 CA MET 74 16.502 23.390 31.537 1.00 0.00 C ATOM 259 C MET 74 15.088 23.445 32.130 1.00 0.00 C ATOM 260 O MET 74 14.101 23.170 31.447 1.00 0.00 O ATOM 261 N GLN 75 14.971 24.070 33.303 1.00 0.00 N ATOM 262 CA GLN 75 13.698 24.355 33.939 1.00 0.00 C ATOM 263 C GLN 75 12.773 25.212 33.078 1.00 0.00 C ATOM 264 O GLN 75 11.745 24.644 32.647 1.00 0.00 O ATOM 265 N THR 76 13.182 26.391 32.588 1.00 0.00 N ATOM 266 CA THR 76 12.233 27.082 31.721 1.00 0.00 C ATOM 267 C THR 76 11.863 26.215 30.528 1.00 0.00 C ATOM 268 O THR 76 10.670 26.203 30.165 1.00 0.00 O ATOM 269 N LEU 77 12.778 25.583 29.820 1.00 0.00 N ATOM 270 CA LEU 77 12.530 24.799 28.620 1.00 0.00 C ATOM 271 C LEU 77 11.596 23.615 28.863 1.00 0.00 C ATOM 272 O LEU 77 10.840 23.327 27.956 1.00 0.00 O ATOM 273 N LYS 78 11.744 22.866 29.928 1.00 0.00 N ATOM 274 CA LYS 78 10.853 21.781 30.293 1.00 0.00 C ATOM 275 C LYS 78 9.457 22.261 30.686 1.00 0.00 C ATOM 276 O LYS 78 8.479 21.804 30.050 1.00 0.00 O ATOM 277 N ASN 79 9.309 23.345 31.447 1.00 0.00 N ATOM 278 CA ASN 79 8.000 23.872 31.786 1.00 0.00 C ATOM 279 C ASN 79 7.235 24.357 30.557 1.00 0.00 C ATOM 280 O ASN 79 6.045 24.050 30.307 1.00 0.00 O ATOM 281 N TRP 80 7.966 25.016 29.655 1.00 0.00 N ATOM 282 CA TRP 80 7.300 25.625 28.524 1.00 0.00 C ATOM 283 C TRP 80 6.823 24.511 27.630 1.00 0.00 C ATOM 284 O TRP 80 5.827 24.521 26.916 1.00 0.00 O ATOM 285 N LEU 81 7.690 23.518 27.552 1.00 0.00 N ATOM 286 CA LEU 81 7.482 22.409 26.617 1.00 0.00 C ATOM 287 C LEU 81 6.489 21.420 27.198 1.00 0.00 C ATOM 288 O LEU 81 5.689 21.055 26.367 1.00 0.00 O ATOM 289 N GLU 82 6.332 21.268 28.484 1.00 0.00 N ATOM 290 CA GLU 82 5.174 20.605 29.100 1.00 0.00 C ATOM 291 C GLU 82 3.865 21.365 28.897 1.00 0.00 C ATOM 292 O GLU 82 2.890 20.812 28.369 1.00 0.00 O ATOM 293 N TYR 83 3.951 22.700 28.975 1.00 0.00 N ATOM 294 CA TYR 83 2.861 23.589 28.669 1.00 0.00 C ATOM 295 C TYR 83 2.391 23.557 27.238 1.00 0.00 C ATOM 296 O TYR 83 1.138 23.419 27.100 1.00 0.00 O ATOM 297 N LEU 84 3.267 23.530 26.218 1.00 0.00 N ATOM 298 CA LEU 84 2.668 23.556 24.859 1.00 0.00 C ATOM 299 C LEU 84 2.010 22.217 24.507 1.00 0.00 C ATOM 300 O LEU 84 1.189 22.008 23.603 1.00 0.00 O ATOM 301 N ALA 85 2.444 21.148 25.137 1.00 0.00 N ATOM 302 CA ALA 85 2.014 19.792 25.007 1.00 0.00 C ATOM 303 C ALA 85 0.647 19.613 25.675 1.00 0.00 C ATOM 304 O ALA 85 -0.291 19.266 24.983 1.00 0.00 O ATOM 305 N ARG 86 0.541 20.099 26.898 1.00 0.00 N ATOM 306 CA ARG 86 -0.722 20.256 27.594 1.00 0.00 C ATOM 307 C ARG 86 -1.705 21.138 26.837 1.00 0.00 C ATOM 308 O ARG 86 -2.891 20.775 26.781 1.00 0.00 O ATOM 309 N ILE 87 -1.306 22.146 26.058 1.00 0.00 N ATOM 310 CA ILE 87 -2.242 23.066 25.409 1.00 0.00 C ATOM 311 C ILE 87 -2.655 22.515 24.059 1.00 0.00 C ATOM 312 O ILE 87 -3.382 23.157 23.273 1.00 0.00 O ATOM 313 N ASP 88 -1.961 21.421 23.755 1.00 0.00 N ATOM 314 CA ASP 88 -2.048 20.784 22.440 1.00 0.00 C ATOM 315 C ASP 88 -1.415 21.688 21.411 1.00 0.00 C ATOM 316 O ASP 88 -1.916 21.717 20.293 1.00 0.00 O ATOM 317 N VAL 89 -0.363 22.477 21.707 1.00 0.00 N ATOM 318 CA VAL 89 0.047 23.439 20.653 1.00 0.00 C ATOM 319 C VAL 89 0.843 22.593 19.669 1.00 0.00 C ATOM 320 O VAL 89 0.946 22.794 18.500 1.00 0.00 O ATOM 321 N VAL 90 1.382 21.558 20.233 1.00 0.00 N ATOM 322 CA VAL 90 2.221 20.572 19.557 1.00 0.00 C ATOM 323 C VAL 90 1.803 19.215 20.097 1.00 0.00 C ATOM 324 O VAL 90 1.594 19.156 21.315 1.00 0.00 O ATOM 325 N ASP 91 1.860 18.103 19.392 1.00 0.00 N ATOM 326 CA ASP 91 1.438 16.804 19.890 1.00 0.00 C ATOM 327 C ASP 91 2.403 16.098 20.821 1.00 0.00 C ATOM 328 O ASP 91 2.170 14.947 21.239 1.00 0.00 O ATOM 329 N GLU 92 3.620 16.616 20.958 1.00 0.00 N ATOM 330 CA GLU 92 4.655 15.832 21.653 1.00 0.00 C ATOM 331 C GLU 92 5.334 16.811 22.595 1.00 0.00 C ATOM 332 O GLU 92 5.065 17.983 22.387 1.00 0.00 O ATOM 333 N ASP 93 6.089 16.364 23.560 1.00 0.00 N ATOM 334 CA ASP 93 6.889 17.234 24.385 1.00 0.00 C ATOM 335 C ASP 93 8.363 16.916 24.045 1.00 0.00 C ATOM 336 O ASP 93 9.045 16.101 24.695 1.00 0.00 O ATOM 337 N LEU 94 8.957 17.778 23.225 1.00 0.00 N ATOM 338 CA LEU 94 10.355 17.633 22.842 1.00 0.00 C ATOM 339 C LEU 94 11.324 17.677 23.986 1.00 0.00 C ATOM 340 O LEU 94 12.458 17.226 23.798 1.00 0.00 O ATOM 341 N PRO 95 10.989 18.188 25.151 1.00 0.00 N ATOM 342 CA PRO 95 11.908 18.345 26.247 1.00 0.00 C ATOM 343 C PRO 95 11.910 17.195 27.233 1.00 0.00 C ATOM 344 O PRO 95 12.725 17.130 28.171 1.00 0.00 O ATOM 345 N GLU 96 11.069 16.209 26.980 1.00 0.00 N ATOM 346 CA GLU 96 10.736 15.110 27.869 1.00 0.00 C ATOM 347 C GLU 96 11.932 14.325 28.372 1.00 0.00 C ATOM 348 O GLU 96 12.007 14.021 29.558 1.00 0.00 O ATOM 349 N LYS 97 12.816 13.987 27.455 1.00 0.00 N ATOM 350 CA LYS 97 13.992 13.209 27.789 1.00 0.00 C ATOM 351 C LYS 97 15.104 14.044 28.390 1.00 0.00 C ATOM 352 O LYS 97 15.702 13.583 29.361 1.00 0.00 O ATOM 353 N VAL 98 15.347 15.256 27.930 1.00 0.00 N ATOM 354 CA VAL 98 16.468 16.089 28.306 1.00 0.00 C ATOM 355 C VAL 98 16.962 15.879 29.742 1.00 0.00 C ATOM 356 O VAL 98 18.147 16.139 30.018 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 356 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 43.33 83.7 172 86.0 200 ARMSMC SECONDARY STRUCTURE . . 30.17 94.2 121 94.5 128 ARMSMC SURFACE . . . . . . . . 49.22 79.2 106 82.8 128 ARMSMC BURIED . . . . . . . . 31.66 90.9 66 91.7 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 89 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 83 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 56 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 57 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 72 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 57 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.52 (Number of atoms: 89) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.52 89 88.1 101 CRMSCA CRN = ALL/NP . . . . . 0.0284 CRMSCA SECONDARY STRUCTURE . . 2.02 61 95.3 64 CRMSCA SURFACE . . . . . . . . 2.91 55 84.6 65 CRMSCA BURIED . . . . . . . . 1.71 34 94.4 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.47 356 70.9 502 CRMSMC SECONDARY STRUCTURE . . 2.04 244 76.7 318 CRMSMC SURFACE . . . . . . . . 2.83 220 68.3 322 CRMSMC BURIED . . . . . . . . 1.72 136 75.6 180 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 439 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 387 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 307 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 278 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 161 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.47 356 42.2 843 CRMSALL SECONDARY STRUCTURE . . 2.04 244 43.3 563 CRMSALL SURFACE . . . . . . . . 2.83 220 40.9 538 CRMSALL BURIED . . . . . . . . 1.72 136 44.6 305 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.961 1.000 0.500 89 88.1 101 ERRCA SECONDARY STRUCTURE . . 1.612 1.000 0.500 61 95.3 64 ERRCA SURFACE . . . . . . . . 2.230 1.000 0.500 55 84.6 65 ERRCA BURIED . . . . . . . . 1.525 1.000 0.500 34 94.4 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.928 1.000 0.500 356 70.9 502 ERRMC SECONDARY STRUCTURE . . 1.598 1.000 0.500 244 76.7 318 ERRMC SURFACE . . . . . . . . 2.184 1.000 0.500 220 68.3 322 ERRMC BURIED . . . . . . . . 1.514 1.000 0.500 136 75.6 180 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 439 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 387 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 307 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 278 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 161 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.928 1.000 0.500 356 42.2 843 ERRALL SECONDARY STRUCTURE . . 1.598 1.000 0.500 244 43.3 563 ERRALL SURFACE . . . . . . . . 2.184 1.000 0.500 220 40.9 538 ERRALL BURIED . . . . . . . . 1.514 1.000 0.500 136 44.6 305 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 15 60 79 85 88 89 101 DISTCA CA (P) 14.85 59.41 78.22 84.16 87.13 101 DISTCA CA (RMS) 0.68 1.31 1.65 1.89 2.26 DISTCA ALL (N) 72 246 316 338 354 356 843 DISTALL ALL (P) 8.54 29.18 37.49 40.09 41.99 843 DISTALL ALL (RMS) 0.74 1.29 1.63 1.84 2.34 DISTALL END of the results output