####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 87 ( 348), selected 87 , name T0619AL285_1-D1 # Molecule2: number of CA atoms 101 ( 843), selected 87 , name T0619-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0619AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 87 4 - 98 2.75 2.75 LCS_AVERAGE: 86.14 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 75 16 - 98 1.84 2.87 LCS_AVERAGE: 67.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 17 - 42 0.94 4.09 LCS_AVERAGE: 20.21 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 87 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 4 R 4 13 14 87 11 13 16 24 32 49 66 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 5 E 5 13 14 87 11 13 13 13 13 13 53 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 6 A 6 13 14 87 11 13 13 13 13 13 13 14 14 53 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 7 R 7 13 14 87 11 13 13 13 18 31 39 46 57 76 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 8 D 8 13 14 87 11 13 13 21 27 38 63 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 9 R 9 13 14 87 11 13 13 13 13 13 13 63 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT Y 10 Y 10 13 14 87 11 13 13 13 13 15 18 43 57 80 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 11 L 11 13 14 87 11 13 13 13 13 13 22 34 51 80 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 12 A 12 13 14 87 11 13 13 13 23 28 51 71 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT H 13 H 13 13 14 87 11 13 13 13 13 13 16 62 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 14 R 14 13 68 87 11 13 13 13 13 13 13 73 76 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT Q 15 Q 15 13 70 87 4 13 13 13 13 13 13 29 76 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT T 16 T 16 20 75 87 4 13 22 32 61 69 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 17 D 17 26 75 87 10 18 27 55 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 18 A 18 26 75 87 12 18 27 50 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 19 A 19 26 75 87 5 20 33 58 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 20 D 20 26 75 87 5 25 40 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 21 A 21 26 75 87 12 25 41 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT S 22 S 22 26 75 87 12 25 38 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT I 23 I 23 26 75 87 12 25 42 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT K 24 K 24 26 75 87 12 25 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT S 25 S 25 26 75 87 12 26 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT F 26 F 26 26 75 87 12 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 27 R 27 26 75 87 12 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT Y 28 Y 28 26 75 87 12 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 29 R 29 26 75 87 12 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 30 L 30 26 75 87 13 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT K 31 K 31 26 75 87 13 30 45 57 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT H 32 H 32 26 75 87 16 31 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT F 33 F 33 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT V 34 V 34 26 75 87 13 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 35 E 35 26 75 87 13 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT W 36 W 36 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 37 A 37 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 38 E 38 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 39 E 39 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 40 R 40 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 41 D 41 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT I 42 I 42 26 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 44 A 44 19 75 87 3 3 8 17 56 69 73 74 78 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT M 45 M 45 19 75 87 5 23 42 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 46 R 46 19 75 87 3 16 35 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 47 E 47 19 75 87 8 28 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 48 L 48 19 75 87 11 24 44 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT T 49 T 49 19 75 87 11 25 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT G 50 G 50 19 75 87 11 16 42 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT W 51 W 51 19 75 87 11 29 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT K 52 K 52 19 75 87 11 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 53 L 53 19 75 87 11 30 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 54 D 54 19 75 87 11 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 55 E 55 19 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT Y 56 Y 56 19 75 87 13 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 57 E 57 19 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT T 58 T 58 19 75 87 11 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT F 59 F 59 19 75 87 11 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 60 R 60 17 75 87 3 3 5 15 46 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 61 R 61 21 75 87 0 3 22 56 64 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT T 69 T 69 23 75 87 9 25 40 59 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 70 L 70 23 75 87 7 21 43 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT N 71 N 71 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT G 72 G 72 23 75 87 12 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 73 E 73 23 75 87 10 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT M 74 M 74 23 75 87 10 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT Q 75 Q 75 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT T 76 T 76 23 75 87 11 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 77 L 77 23 75 87 15 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT K 78 K 78 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT N 79 N 79 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT W 80 W 80 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 81 L 81 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 82 E 82 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT Y 83 Y 83 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 84 L 84 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT A 85 A 85 23 75 87 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT R 86 R 86 23 75 87 15 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT I 87 I 87 23 75 87 11 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 88 D 88 23 75 87 10 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT V 89 V 89 23 75 87 9 28 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT V 90 V 90 23 75 87 6 20 40 57 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 91 D 91 23 75 87 3 4 22 43 62 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 92 E 92 17 75 87 3 14 37 60 66 71 73 74 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT D 93 D 93 6 75 87 4 4 15 27 50 66 72 74 77 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT L 94 L 94 6 75 87 4 4 37 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT P 95 P 95 6 75 87 4 4 8 48 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT E 96 E 96 6 75 87 11 29 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT K 97 K 97 6 75 87 4 12 25 51 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_GDT V 98 V 98 6 75 87 3 6 27 59 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 LCS_AVERAGE LCS_A: 57.84 ( 20.21 67.18 86.14 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 33 49 60 66 71 73 75 79 83 86 87 87 87 87 87 87 87 87 87 GDT PERCENT_AT 15.84 32.67 48.51 59.41 65.35 70.30 72.28 74.26 78.22 82.18 85.15 86.14 86.14 86.14 86.14 86.14 86.14 86.14 86.14 86.14 GDT RMS_LOCAL 0.31 0.64 0.98 1.31 1.47 1.63 1.70 2.03 2.26 2.47 2.75 2.75 2.75 2.75 2.75 2.75 2.75 2.75 2.75 2.75 GDT RMS_ALL_AT 3.49 3.41 3.16 3.00 2.93 2.91 2.92 2.80 2.77 2.76 2.75 2.75 2.75 2.75 2.75 2.75 2.75 2.75 2.75 2.75 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 4 R 4 5.407 7 0.037 0.037 5.407 30.238 10.996 LGA E 5 E 5 5.004 5 0.061 0.061 5.004 33.095 14.709 LGA A 6 A 6 6.725 1 0.134 0.134 6.725 20.595 16.476 LGA R 7 R 7 6.631 7 0.069 0.069 6.631 20.595 7.489 LGA D 8 D 8 5.506 4 0.013 0.013 5.506 27.619 13.810 LGA R 9 R 9 5.596 7 0.053 0.053 5.596 29.048 10.563 LGA Y 10 Y 10 5.709 8 0.042 0.042 5.709 27.619 9.206 LGA L 11 L 11 6.310 4 0.120 0.120 6.310 22.738 11.369 LGA A 12 A 12 5.912 1 0.119 0.119 5.912 27.619 22.095 LGA H 13 H 13 5.123 6 0.057 0.057 5.123 32.976 13.190 LGA R 14 R 14 5.091 7 0.158 0.158 5.830 29.286 10.649 LGA Q 15 Q 15 7.114 5 0.064 0.064 8.142 14.524 6.455 LGA T 16 T 16 4.232 3 0.280 0.280 4.520 37.262 21.293 LGA D 17 D 17 2.473 4 0.608 0.608 2.626 66.905 33.452 LGA A 18 A 18 2.803 1 0.304 0.304 4.401 50.357 40.286 LGA A 19 A 19 2.099 1 0.045 0.045 2.099 68.810 55.048 LGA D 20 D 20 1.653 4 0.083 0.083 1.753 75.000 37.500 LGA A 21 A 21 1.612 1 0.222 0.222 1.622 72.857 58.286 LGA S 22 S 22 1.855 2 0.109 0.109 1.855 75.000 50.000 LGA I 23 I 23 1.185 4 0.044 0.044 1.427 81.429 40.714 LGA K 24 K 24 1.228 5 0.018 0.018 1.292 81.429 36.190 LGA S 25 S 25 1.418 2 0.120 0.120 1.558 79.286 52.857 LGA F 26 F 26 1.159 7 0.068 0.068 1.189 81.429 29.610 LGA R 27 R 27 1.227 7 0.114 0.114 1.757 79.405 28.874 LGA Y 28 Y 28 1.788 8 0.112 0.112 2.320 70.833 23.611 LGA R 29 R 29 1.765 7 0.009 0.009 1.852 72.857 26.494 LGA L 30 L 30 1.474 4 0.096 0.096 1.710 77.143 38.571 LGA K 31 K 31 2.194 5 0.056 0.056 2.194 68.810 30.582 LGA H 32 H 32 1.632 6 0.143 0.143 1.721 75.000 30.000 LGA F 33 F 33 0.351 7 0.087 0.087 0.671 92.857 33.766 LGA V 34 V 34 1.468 3 0.084 0.084 1.468 83.690 47.823 LGA E 35 E 35 1.011 5 0.107 0.107 1.177 83.690 37.196 LGA W 36 W 36 0.208 10 0.058 0.058 0.723 92.857 26.531 LGA A 37 A 37 1.118 1 0.037 0.037 1.480 83.690 66.952 LGA E 38 E 38 1.542 5 0.116 0.116 1.926 77.143 34.286 LGA E 39 E 39 1.009 5 0.102 0.102 1.070 81.429 36.190 LGA R 40 R 40 1.317 7 0.063 0.063 1.834 77.143 28.052 LGA D 41 D 41 1.929 4 0.446 0.446 1.929 79.405 39.702 LGA I 42 I 42 1.801 4 0.228 0.228 2.103 70.833 35.417 LGA A 44 A 44 3.836 1 0.133 0.133 3.946 50.238 40.190 LGA M 45 M 45 1.924 4 0.117 0.117 2.556 68.929 34.464 LGA R 46 R 46 2.560 7 0.066 0.066 2.560 64.881 23.593 LGA E 47 E 47 0.708 5 0.043 0.043 1.424 88.214 39.206 LGA L 48 L 48 1.867 4 0.051 0.051 2.214 70.833 35.417 LGA T 49 T 49 1.469 3 0.033 0.033 1.530 77.143 44.082 LGA G 50 G 50 2.017 0 0.097 0.097 2.017 70.833 70.833 LGA W 51 W 51 1.768 10 0.027 0.027 1.768 75.000 21.429 LGA K 52 K 52 1.186 5 0.148 0.148 1.328 81.429 36.190 LGA L 53 L 53 1.321 4 0.022 0.022 1.321 81.429 40.714 LGA D 54 D 54 1.615 4 0.073 0.073 1.940 75.000 37.500 LGA E 55 E 55 1.810 5 0.120 0.120 2.232 70.833 31.481 LGA Y 56 Y 56 1.285 8 0.024 0.024 1.388 81.429 27.143 LGA E 57 E 57 1.730 5 0.072 0.072 1.938 72.857 32.381 LGA T 58 T 58 1.967 3 0.077 0.077 2.038 70.833 40.476 LGA F 59 F 59 1.658 7 0.562 0.562 2.544 68.929 25.065 LGA R 60 R 60 3.357 7 0.551 0.551 3.357 65.357 23.766 LGA R 61 R 61 3.175 7 0.581 0.581 4.314 46.905 17.056 LGA T 69 T 69 1.895 3 0.597 0.597 4.035 66.071 37.755 LGA L 70 L 70 1.500 4 0.062 0.062 1.500 79.286 39.643 LGA N 71 N 71 1.352 4 0.073 0.073 1.359 83.690 41.845 LGA G 72 G 72 1.615 0 0.191 0.191 1.615 79.286 79.286 LGA E 73 E 73 1.120 5 0.024 0.024 1.191 85.952 38.201 LGA M 74 M 74 0.925 4 0.108 0.108 1.193 85.952 42.976 LGA Q 75 Q 75 1.848 5 0.152 0.152 1.848 75.000 33.333 LGA T 76 T 76 1.788 3 0.034 0.034 1.788 77.143 44.082 LGA L 77 L 77 0.852 4 0.079 0.079 1.094 88.214 44.107 LGA K 78 K 78 0.954 5 0.050 0.050 1.117 85.952 38.201 LGA N 79 N 79 1.445 4 0.071 0.071 1.445 81.429 40.714 LGA W 80 W 80 1.287 10 0.101 0.101 1.321 81.429 23.265 LGA L 81 L 81 0.578 4 0.096 0.096 0.789 92.857 46.429 LGA E 82 E 82 0.735 5 0.073 0.073 0.969 90.476 40.212 LGA Y 83 Y 83 1.026 8 0.061 0.061 1.028 83.690 27.897 LGA L 84 L 84 1.051 4 0.100 0.100 1.051 81.429 40.714 LGA A 85 A 85 0.874 1 0.111 0.111 1.066 88.214 70.571 LGA R 86 R 86 0.661 7 0.032 0.032 0.844 90.476 32.900 LGA I 87 I 87 0.781 4 0.084 0.084 1.161 88.214 44.107 LGA D 88 D 88 0.933 4 0.101 0.101 1.444 85.952 42.976 LGA V 89 V 89 1.559 3 0.088 0.088 2.509 69.048 39.456 LGA V 90 V 90 2.399 3 0.097 0.097 2.399 66.786 38.163 LGA D 91 D 91 3.150 4 0.629 0.629 3.939 53.810 26.905 LGA E 92 E 92 2.664 5 0.730 0.730 5.015 49.524 22.011 LGA D 93 D 93 4.356 4 0.390 0.390 4.356 50.357 25.179 LGA L 94 L 94 2.113 4 0.148 0.148 2.858 62.857 31.429 LGA P 95 P 95 2.709 3 0.147 0.147 2.709 69.048 39.456 LGA E 96 E 96 1.209 5 0.124 0.124 2.193 75.119 33.386 LGA K 97 K 97 2.625 5 0.218 0.218 4.462 58.214 25.873 LGA V 98 V 98 2.168 3 0.641 0.641 2.597 66.905 38.231 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 87 348 348 100.00 748 348 46.52 101 SUMMARY(RMSD_GDC): 2.748 2.581 2.581 58.673 29.273 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 87 101 4.0 75 2.03 63.119 68.145 3.525 LGA_LOCAL RMSD: 2.028 Number of atoms: 75 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.795 Number of assigned atoms: 87 Std_ASGN_ATOMS RMSD: 2.748 Standard rmsd on all 87 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.262840 * X + -0.917413 * Y + -0.298779 * Z + -27.438648 Y_new = -0.961373 * X + 0.275250 * Y + 0.000568 * Z + 57.870655 Z_new = 0.081717 * X + 0.287387 * Y + -0.954322 * Z + 71.953041 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.837675 -0.081809 2.849088 [DEG: -105.2910 -4.6873 163.2407 ] ZXZ: -1.572698 2.838179 0.277034 [DEG: -90.1090 162.6157 15.8729 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0619AL285_1-D1 REMARK 2: T0619-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0619AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 87 101 4.0 75 2.03 68.145 2.75 REMARK ---------------------------------------------------------- MOLECULE T0619AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1a0pA ATOM 1 N ARG 4 3.554 33.634 22.451 1.00 0.00 N ATOM 2 CA ARG 4 3.429 32.321 23.031 1.00 0.00 C ATOM 3 C ARG 4 4.228 32.219 24.300 1.00 0.00 C ATOM 4 O ARG 4 3.726 31.605 25.268 1.00 0.00 O ATOM 5 N GLU 5 5.265 32.985 24.471 1.00 0.00 N ATOM 6 CA GLU 5 5.897 33.012 25.790 1.00 0.00 C ATOM 7 C GLU 5 5.165 33.916 26.758 1.00 0.00 C ATOM 8 O GLU 5 5.145 33.583 27.938 1.00 0.00 O ATOM 9 N ALA 6 4.568 35.013 26.275 1.00 0.00 N ATOM 10 CA ALA 6 3.845 35.850 27.229 1.00 0.00 C ATOM 11 C ALA 6 2.619 35.076 27.707 1.00 0.00 C ATOM 12 O ALA 6 2.576 34.946 28.928 1.00 0.00 O ATOM 13 N ARG 7 1.949 34.377 26.772 1.00 0.00 N ATOM 14 CA ARG 7 0.842 33.509 27.178 1.00 0.00 C ATOM 15 C ARG 7 1.280 32.450 28.162 1.00 0.00 C ATOM 16 O ARG 7 0.729 32.506 29.278 1.00 0.00 O ATOM 17 N ASP 8 2.466 31.859 28.001 1.00 0.00 N ATOM 18 CA ASP 8 2.901 30.870 28.982 1.00 0.00 C ATOM 19 C ASP 8 3.137 31.497 30.328 1.00 0.00 C ATOM 20 O ASP 8 2.763 30.914 31.387 1.00 0.00 O ATOM 21 N ARG 9 3.795 32.649 30.378 1.00 0.00 N ATOM 22 CA ARG 9 4.201 33.205 31.685 1.00 0.00 C ATOM 23 C ARG 9 2.929 33.620 32.447 1.00 0.00 C ATOM 24 O ARG 9 2.829 33.528 33.674 1.00 0.00 O ATOM 25 N TYR 10 1.984 34.149 31.653 1.00 0.00 N ATOM 26 CA TYR 10 0.654 34.518 32.096 1.00 0.00 C ATOM 27 C TYR 10 -0.050 33.362 32.782 1.00 0.00 C ATOM 28 O TYR 10 -0.499 33.503 33.923 1.00 0.00 O ATOM 29 N LEU 11 -0.071 32.238 32.029 1.00 0.00 N ATOM 30 CA LEU 11 -0.642 31.015 32.628 1.00 0.00 C ATOM 31 C LEU 11 0.243 30.572 33.780 1.00 0.00 C ATOM 32 O LEU 11 -0.252 30.547 34.908 1.00 0.00 O ATOM 33 N ALA 12 1.569 30.709 33.615 1.00 0.00 N ATOM 34 CA ALA 12 2.411 30.376 34.785 1.00 0.00 C ATOM 35 C ALA 12 1.977 31.270 35.936 1.00 0.00 C ATOM 36 O ALA 12 1.520 30.791 36.964 1.00 0.00 O ATOM 37 N HIS 13 2.035 32.595 35.763 1.00 0.00 N ATOM 38 CA HIS 13 1.645 33.525 36.830 1.00 0.00 C ATOM 39 C HIS 13 0.246 33.238 37.371 1.00 0.00 C ATOM 40 O HIS 13 0.101 33.233 38.597 1.00 0.00 O ATOM 41 N ARG 14 -0.721 32.818 36.537 1.00 0.00 N ATOM 42 CA ARG 14 -1.978 32.402 37.101 1.00 0.00 C ATOM 43 C ARG 14 -1.931 31.414 38.228 1.00 0.00 C ATOM 44 O ARG 14 -2.723 31.632 39.151 1.00 0.00 O ATOM 45 N GLN 15 -1.097 30.391 38.278 1.00 0.00 N ATOM 46 CA GLN 15 -1.254 29.367 39.325 1.00 0.00 C ATOM 47 C GLN 15 -0.725 29.636 40.701 1.00 0.00 C ATOM 48 O GLN 15 -0.463 28.801 41.570 1.00 0.00 O ATOM 49 N THR 16 -0.632 30.911 41.061 1.00 0.00 N ATOM 50 CA THR 16 -0.180 31.552 42.269 1.00 0.00 C ATOM 51 C THR 16 1.174 30.974 42.695 1.00 0.00 C ATOM 52 O THR 16 1.573 30.924 43.848 1.00 0.00 O ATOM 53 N ASP 17 1.990 30.800 41.665 1.00 0.00 N ATOM 54 CA ASP 17 3.195 30.004 41.715 1.00 0.00 C ATOM 55 C ASP 17 4.397 30.862 41.354 1.00 0.00 C ATOM 56 O ASP 17 4.239 31.895 40.710 1.00 0.00 O ATOM 57 N ALA 18 5.586 30.351 41.640 1.00 0.00 N ATOM 58 CA ALA 18 6.830 30.962 41.208 1.00 0.00 C ATOM 59 C ALA 18 7.061 32.366 41.744 1.00 0.00 C ATOM 60 O ALA 18 7.007 32.609 42.960 1.00 0.00 O ATOM 61 N ALA 19 7.511 33.294 40.905 1.00 0.00 N ATOM 62 CA ALA 19 7.907 34.617 41.393 1.00 0.00 C ATOM 63 C ALA 19 8.242 35.473 40.191 1.00 0.00 C ATOM 64 O ALA 19 8.695 34.917 39.180 1.00 0.00 O ATOM 65 N ASP 20 8.097 36.796 40.276 1.00 0.00 N ATOM 66 CA ASP 20 8.354 37.626 39.098 1.00 0.00 C ATOM 67 C ASP 20 9.803 37.508 38.660 1.00 0.00 C ATOM 68 O ASP 20 10.128 37.775 37.517 1.00 0.00 O ATOM 69 N ALA 21 10.679 37.249 39.613 1.00 0.00 N ATOM 70 CA ALA 21 12.014 36.770 39.417 1.00 0.00 C ATOM 71 C ALA 21 12.044 35.561 38.474 1.00 0.00 C ATOM 72 O ALA 21 12.316 35.641 37.272 1.00 0.00 O ATOM 73 N SER 22 11.635 34.421 39.068 1.00 0.00 N ATOM 74 CA SER 22 11.696 33.161 38.336 1.00 0.00 C ATOM 75 C SER 22 10.928 33.293 37.034 1.00 0.00 C ATOM 76 O SER 22 11.569 33.131 35.987 1.00 0.00 O ATOM 77 N ILE 23 9.867 34.094 37.006 1.00 0.00 N ATOM 78 CA ILE 23 9.179 34.447 35.774 1.00 0.00 C ATOM 79 C ILE 23 9.990 35.194 34.761 1.00 0.00 C ATOM 80 O ILE 23 9.979 34.876 33.579 1.00 0.00 O ATOM 81 N LYS 24 10.830 36.121 35.190 1.00 0.00 N ATOM 82 CA LYS 24 11.565 37.007 34.276 1.00 0.00 C ATOM 83 C LYS 24 12.849 36.277 33.880 1.00 0.00 C ATOM 84 O LYS 24 13.207 36.321 32.697 1.00 0.00 O ATOM 85 N SER 25 13.299 35.449 34.836 1.00 0.00 N ATOM 86 CA SER 25 14.366 34.491 34.467 1.00 0.00 C ATOM 87 C SER 25 13.861 33.553 33.361 1.00 0.00 C ATOM 88 O SER 25 14.382 33.633 32.216 1.00 0.00 O ATOM 89 N PHE 26 12.610 33.091 33.445 1.00 0.00 N ATOM 90 CA PHE 26 11.999 32.421 32.311 1.00 0.00 C ATOM 91 C PHE 26 11.794 33.316 31.117 1.00 0.00 C ATOM 92 O PHE 26 12.008 32.782 30.003 1.00 0.00 O ATOM 93 N ARG 27 11.354 34.578 31.265 1.00 0.00 N ATOM 94 CA ARG 27 11.110 35.324 29.990 1.00 0.00 C ATOM 95 C ARG 27 12.402 35.362 29.178 1.00 0.00 C ATOM 96 O ARG 27 12.494 35.415 27.970 1.00 0.00 O ATOM 97 N TYR 28 13.424 35.764 29.897 1.00 0.00 N ATOM 98 CA TYR 28 14.812 35.824 29.517 1.00 0.00 C ATOM 99 C TYR 28 15.293 34.582 28.774 1.00 0.00 C ATOM 100 O TYR 28 15.639 34.600 27.571 1.00 0.00 O ATOM 101 N ARG 29 15.289 33.466 29.507 1.00 0.00 N ATOM 102 CA ARG 29 15.782 32.197 28.972 1.00 0.00 C ATOM 103 C ARG 29 15.040 31.738 27.731 1.00 0.00 C ATOM 104 O ARG 29 15.660 31.350 26.738 1.00 0.00 O ATOM 105 N LEU 30 13.714 31.895 27.729 1.00 0.00 N ATOM 106 CA LEU 30 12.901 31.461 26.590 1.00 0.00 C ATOM 107 C LEU 30 13.070 32.368 25.382 1.00 0.00 C ATOM 108 O LEU 30 13.059 31.896 24.232 1.00 0.00 O ATOM 109 N LYS 31 13.248 33.673 25.618 1.00 0.00 N ATOM 110 CA LYS 31 13.474 34.649 24.547 1.00 0.00 C ATOM 111 C LYS 31 14.854 34.516 23.907 1.00 0.00 C ATOM 112 O LYS 31 14.929 34.490 22.671 1.00 0.00 O ATOM 113 N HIS 32 15.876 34.208 24.713 1.00 0.00 N ATOM 114 CA HIS 32 17.147 33.802 24.055 1.00 0.00 C ATOM 115 C HIS 32 16.894 32.554 23.205 1.00 0.00 C ATOM 116 O HIS 32 17.007 32.595 21.979 1.00 0.00 O ATOM 117 N PHE 33 16.314 31.517 23.841 1.00 0.00 N ATOM 118 CA PHE 33 15.844 30.335 23.153 1.00 0.00 C ATOM 119 C PHE 33 15.024 30.576 21.904 1.00 0.00 C ATOM 120 O PHE 33 15.472 30.071 20.872 1.00 0.00 O ATOM 121 N VAL 34 14.054 31.486 21.817 1.00 0.00 N ATOM 122 CA VAL 34 13.412 31.642 20.510 1.00 0.00 C ATOM 123 C VAL 34 14.272 32.434 19.537 1.00 0.00 C ATOM 124 O VAL 34 14.213 32.201 18.321 1.00 0.00 O ATOM 125 N GLU 35 15.109 33.338 20.052 1.00 0.00 N ATOM 126 CA GLU 35 16.085 34.031 19.208 1.00 0.00 C ATOM 127 C GLU 35 16.925 32.959 18.510 1.00 0.00 C ATOM 128 O GLU 35 16.979 32.795 17.302 1.00 0.00 O ATOM 129 N TRP 36 17.513 32.159 19.392 1.00 0.00 N ATOM 130 CA TRP 36 18.404 31.065 19.067 1.00 0.00 C ATOM 131 C TRP 36 17.804 30.172 17.996 1.00 0.00 C ATOM 132 O TRP 36 18.366 30.017 16.923 1.00 0.00 O ATOM 133 N ALA 37 16.576 29.719 18.272 1.00 0.00 N ATOM 134 CA ALA 37 15.886 28.834 17.357 1.00 0.00 C ATOM 135 C ALA 37 15.572 29.514 16.035 1.00 0.00 C ATOM 136 O ALA 37 15.661 28.904 14.969 1.00 0.00 O ATOM 137 N GLU 38 15.079 30.742 16.114 1.00 0.00 N ATOM 138 CA GLU 38 14.671 31.442 14.891 1.00 0.00 C ATOM 139 C GLU 38 15.870 31.666 13.973 1.00 0.00 C ATOM 140 O GLU 38 15.919 31.119 12.853 1.00 0.00 O ATOM 141 N GLU 39 16.991 32.082 14.570 1.00 0.00 N ATOM 142 CA GLU 39 18.282 32.092 13.907 1.00 0.00 C ATOM 143 C GLU 39 18.576 30.750 13.242 1.00 0.00 C ATOM 144 O GLU 39 19.056 30.804 12.102 1.00 0.00 O ATOM 145 N ARG 40 18.324 29.603 13.863 1.00 0.00 N ATOM 146 CA ARG 40 18.579 28.315 13.235 1.00 0.00 C ATOM 147 C ARG 40 17.518 27.880 12.241 1.00 0.00 C ATOM 148 O ARG 40 17.609 26.749 11.735 1.00 0.00 O ATOM 149 N ASP 41 16.556 28.725 11.899 1.00 0.00 N ATOM 150 CA ASP 41 15.502 28.419 10.943 1.00 0.00 C ATOM 151 C ASP 41 14.187 28.048 11.654 1.00 0.00 C ATOM 152 O ASP 41 13.120 28.651 11.494 1.00 0.00 O ATOM 153 N ILE 42 14.330 27.160 12.613 1.00 0.00 N ATOM 154 CA ILE 42 13.427 26.674 13.596 1.00 0.00 C ATOM 155 C ILE 42 12.446 27.639 14.264 1.00 0.00 C ATOM 156 O ILE 42 12.470 28.859 14.214 1.00 0.00 O ATOM 157 N ALA 44 11.475 27.010 14.927 1.00 0.00 N ATOM 158 CA ALA 44 10.343 27.726 15.512 1.00 0.00 C ATOM 159 C ALA 44 9.793 27.105 16.755 1.00 0.00 C ATOM 160 O ALA 44 10.190 25.987 17.093 1.00 0.00 O ATOM 161 N MET 45 8.845 27.709 17.465 1.00 0.00 N ATOM 162 CA MET 45 8.339 26.995 18.672 1.00 0.00 C ATOM 163 C MET 45 7.729 25.679 18.201 1.00 0.00 C ATOM 164 O MET 45 8.012 24.644 18.775 1.00 0.00 O ATOM 165 N ARG 46 6.988 25.699 17.112 1.00 0.00 N ATOM 166 CA ARG 46 6.332 24.594 16.530 1.00 0.00 C ATOM 167 C ARG 46 7.256 23.463 16.095 1.00 0.00 C ATOM 168 O ARG 46 6.669 22.383 15.943 1.00 0.00 O ATOM 169 N GLU 47 8.481 23.747 15.632 1.00 0.00 N ATOM 170 CA GLU 47 9.253 22.693 14.962 1.00 0.00 C ATOM 171 C GLU 47 10.538 22.327 15.688 1.00 0.00 C ATOM 172 O GLU 47 11.170 21.341 15.305 1.00 0.00 O ATOM 173 N LEU 48 10.947 23.163 16.635 1.00 0.00 N ATOM 174 CA LEU 48 12.202 22.853 17.303 1.00 0.00 C ATOM 175 C LEU 48 12.099 21.414 17.812 1.00 0.00 C ATOM 176 O LEU 48 11.077 21.011 18.327 1.00 0.00 O ATOM 177 N THR 49 13.154 20.621 17.624 1.00 0.00 N ATOM 178 CA THR 49 13.165 19.248 18.088 1.00 0.00 C ATOM 179 C THR 49 13.998 19.065 19.314 1.00 0.00 C ATOM 180 O THR 49 14.746 19.957 19.719 1.00 0.00 O ATOM 181 N GLY 50 13.905 17.899 19.941 1.00 0.00 N ATOM 182 CA GLY 50 14.695 17.633 21.147 1.00 0.00 C ATOM 183 C GLY 50 16.202 17.800 20.961 1.00 0.00 C ATOM 184 O GLY 50 16.962 18.004 21.925 1.00 0.00 O ATOM 185 N TRP 51 16.692 17.501 19.758 1.00 0.00 N ATOM 186 CA TRP 51 18.092 17.632 19.384 1.00 0.00 C ATOM 187 C TRP 51 18.573 19.077 19.292 1.00 0.00 C ATOM 188 O TRP 51 19.610 19.477 19.845 1.00 0.00 O ATOM 189 N LYS 52 17.645 19.856 18.738 1.00 0.00 N ATOM 190 CA LYS 52 17.738 21.311 18.699 1.00 0.00 C ATOM 191 C LYS 52 17.788 21.842 20.122 1.00 0.00 C ATOM 192 O LYS 52 18.810 22.394 20.537 1.00 0.00 O ATOM 193 N LEU 53 16.928 21.277 20.994 1.00 0.00 N ATOM 194 CA LEU 53 16.921 21.717 22.383 1.00 0.00 C ATOM 195 C LEU 53 18.144 21.186 23.085 1.00 0.00 C ATOM 196 O LEU 53 18.713 21.895 23.921 1.00 0.00 O ATOM 197 N ASP 54 18.596 19.985 22.755 1.00 0.00 N ATOM 198 CA ASP 54 19.830 19.464 23.361 1.00 0.00 C ATOM 199 C ASP 54 21.053 20.319 22.985 1.00 0.00 C ATOM 200 O ASP 54 21.829 20.740 23.835 1.00 0.00 O ATOM 201 N GLU 55 21.202 20.650 21.706 1.00 0.00 N ATOM 202 CA GLU 55 22.173 21.658 21.296 1.00 0.00 C ATOM 203 C GLU 55 22.122 22.922 22.138 1.00 0.00 C ATOM 204 O GLU 55 23.046 23.214 22.909 1.00 0.00 O ATOM 205 N TYR 56 21.099 23.753 22.049 1.00 0.00 N ATOM 206 CA TYR 56 20.943 25.003 22.771 1.00 0.00 C ATOM 207 C TYR 56 21.532 24.997 24.170 1.00 0.00 C ATOM 208 O TYR 56 22.228 25.908 24.603 1.00 0.00 O ATOM 209 N GLU 57 21.119 24.017 24.961 1.00 0.00 N ATOM 210 CA GLU 57 21.516 23.780 26.326 1.00 0.00 C ATOM 211 C GLU 57 23.025 23.599 26.495 1.00 0.00 C ATOM 212 O GLU 57 23.629 23.965 27.502 1.00 0.00 O ATOM 213 N THR 58 23.611 22.870 25.565 1.00 0.00 N ATOM 214 CA THR 58 25.036 22.720 25.369 1.00 0.00 C ATOM 215 C THR 58 25.695 24.049 25.000 1.00 0.00 C ATOM 216 O THR 58 26.675 24.403 25.661 1.00 0.00 O ATOM 217 N PHE 59 25.174 24.782 24.018 1.00 0.00 N ATOM 218 CA PHE 59 25.635 26.154 23.788 1.00 0.00 C ATOM 219 C PHE 59 25.589 26.863 25.147 1.00 0.00 C ATOM 220 O PHE 59 24.623 26.893 25.914 1.00 0.00 O ATOM 221 N ARG 60 26.736 27.311 25.600 1.00 0.00 N ATOM 222 CA ARG 60 27.325 27.233 26.889 1.00 0.00 C ATOM 223 C ARG 60 26.448 26.998 28.110 1.00 0.00 C ATOM 224 O ARG 60 25.460 27.613 28.469 1.00 0.00 O ATOM 225 N ARG 61 27.050 26.154 28.943 1.00 0.00 N ATOM 226 CA ARG 61 26.692 25.838 30.310 1.00 0.00 C ATOM 227 C ARG 61 25.946 24.500 30.285 1.00 0.00 C ATOM 228 O ARG 61 26.529 23.629 29.613 1.00 0.00 O ATOM 229 N THR 69 22.575 29.551 33.269 1.00 0.00 N ATOM 230 CA THR 69 22.597 28.307 34.038 1.00 0.00 C ATOM 231 C THR 69 21.805 27.220 33.320 1.00 0.00 C ATOM 232 O THR 69 20.616 27.354 33.033 1.00 0.00 O ATOM 233 N LEU 70 22.467 26.087 33.052 1.00 0.00 N ATOM 234 CA LEU 70 21.772 25.003 32.351 1.00 0.00 C ATOM 235 C LEU 70 20.536 24.566 33.138 1.00 0.00 C ATOM 236 O LEU 70 19.466 24.496 32.513 1.00 0.00 O ATOM 237 N ASN 71 20.600 24.485 34.469 1.00 0.00 N ATOM 238 CA ASN 71 19.431 24.098 35.234 1.00 0.00 C ATOM 239 C ASN 71 18.241 25.024 34.964 1.00 0.00 C ATOM 240 O ASN 71 17.194 24.534 34.528 1.00 0.00 O ATOM 241 N GLY 72 18.401 26.316 35.242 1.00 0.00 N ATOM 242 CA GLY 72 17.316 27.264 35.046 1.00 0.00 C ATOM 243 C GLY 72 16.846 27.284 33.596 1.00 0.00 C ATOM 244 O GLY 72 15.680 26.886 33.354 1.00 0.00 O ATOM 245 N GLU 73 17.769 27.358 32.644 1.00 0.00 N ATOM 246 CA GLU 73 17.386 27.233 31.241 1.00 0.00 C ATOM 247 C GLU 73 16.648 25.933 30.964 1.00 0.00 C ATOM 248 O GLU 73 15.651 25.952 30.247 1.00 0.00 O ATOM 249 N MET 74 17.056 24.800 31.511 1.00 0.00 N ATOM 250 CA MET 74 16.327 23.539 31.322 1.00 0.00 C ATOM 251 C MET 74 14.912 23.602 31.912 1.00 0.00 C ATOM 252 O MET 74 13.924 23.349 31.222 1.00 0.00 O ATOM 253 N GLN 75 14.798 24.212 33.093 1.00 0.00 N ATOM 254 CA GLN 75 13.527 24.503 33.729 1.00 0.00 C ATOM 255 C GLN 75 12.615 25.383 32.878 1.00 0.00 C ATOM 256 O GLN 75 11.582 24.833 32.437 1.00 0.00 O ATOM 257 N THR 76 13.039 26.564 32.406 1.00 0.00 N ATOM 258 CA THR 76 12.101 27.278 31.546 1.00 0.00 C ATOM 259 C THR 76 11.724 26.432 30.340 1.00 0.00 C ATOM 260 O THR 76 10.533 26.440 29.974 1.00 0.00 O ATOM 261 N LEU 77 12.634 25.800 29.625 1.00 0.00 N ATOM 262 CA LEU 77 12.381 25.036 28.414 1.00 0.00 C ATOM 263 C LEU 77 11.432 23.860 28.638 1.00 0.00 C ATOM 264 O LEU 77 10.676 23.593 27.725 1.00 0.00 O ATOM 265 N LYS 78 11.568 23.094 29.692 1.00 0.00 N ATOM 266 CA LYS 78 10.663 22.015 30.039 1.00 0.00 C ATOM 267 C LYS 78 9.272 22.505 30.435 1.00 0.00 C ATOM 268 O LYS 78 8.290 22.068 29.790 1.00 0.00 O ATOM 269 N ASN 79 9.135 23.580 31.211 1.00 0.00 N ATOM 270 CA ASN 79 7.830 24.117 31.554 1.00 0.00 C ATOM 271 C ASN 79 7.075 24.629 30.330 1.00 0.00 C ATOM 272 O ASN 79 5.882 24.339 30.073 1.00 0.00 O ATOM 273 N TRP 80 7.817 25.292 29.439 1.00 0.00 N ATOM 274 CA TRP 80 7.161 25.925 28.315 1.00 0.00 C ATOM 275 C TRP 80 6.673 24.829 27.404 1.00 0.00 C ATOM 276 O TRP 80 5.680 24.861 26.688 1.00 0.00 O ATOM 277 N LEU 81 7.529 23.827 27.315 1.00 0.00 N ATOM 278 CA LEU 81 7.311 22.734 26.363 1.00 0.00 C ATOM 279 C LEU 81 6.305 21.749 26.927 1.00 0.00 C ATOM 280 O LEU 81 5.503 21.405 26.089 1.00 0.00 O ATOM 281 N GLU 82 6.142 21.580 28.210 1.00 0.00 N ATOM 282 CA GLU 82 4.975 20.922 28.814 1.00 0.00 C ATOM 283 C GLU 82 3.675 21.700 28.618 1.00 0.00 C ATOM 284 O GLU 82 2.696 21.166 28.080 1.00 0.00 O ATOM 285 N TYR 83 3.776 23.033 28.715 1.00 0.00 N ATOM 286 CA TYR 83 2.698 23.938 28.419 1.00 0.00 C ATOM 287 C TYR 83 2.231 23.933 26.986 1.00 0.00 C ATOM 288 O TYR 83 0.977 23.811 26.843 1.00 0.00 O ATOM 289 N LEU 84 3.110 23.910 25.969 1.00 0.00 N ATOM 290 CA LEU 84 2.516 23.962 24.608 1.00 0.00 C ATOM 291 C LEU 84 1.843 22.636 24.236 1.00 0.00 C ATOM 292 O LEU 84 1.023 22.450 23.326 1.00 0.00 O ATOM 293 N ALA 85 2.263 21.553 24.852 1.00 0.00 N ATOM 294 CA ALA 85 1.817 20.205 24.701 1.00 0.00 C ATOM 295 C ALA 85 0.447 20.031 25.363 1.00 0.00 C ATOM 296 O ALA 85 -0.494 19.706 24.663 1.00 0.00 O ATOM 297 N ARG 86 0.343 20.501 26.592 1.00 0.00 N ATOM 298 CA ARG 86 -0.920 20.663 27.287 1.00 0.00 C ATOM 299 C ARG 86 -1.891 21.567 26.540 1.00 0.00 C ATOM 300 O ARG 86 -3.081 21.219 26.475 1.00 0.00 O ATOM 301 N ILE 87 -1.479 22.582 25.776 1.00 0.00 N ATOM 302 CA ILE 87 -2.402 23.521 25.138 1.00 0.00 C ATOM 303 C ILE 87 -2.817 22.995 23.779 1.00 0.00 C ATOM 304 O ILE 87 -3.534 23.657 23.000 1.00 0.00 O ATOM 305 N ASP 88 -2.134 21.898 23.461 1.00 0.00 N ATOM 306 CA ASP 88 -2.225 21.280 22.138 1.00 0.00 C ATOM 307 C ASP 88 -1.579 22.192 21.123 1.00 0.00 C ATOM 308 O ASP 88 -2.076 22.242 20.004 1.00 0.00 O ATOM 309 N VAL 89 -0.518 22.964 21.433 1.00 0.00 N ATOM 310 CA VAL 89 -0.095 23.935 20.394 1.00 0.00 C ATOM 311 C VAL 89 0.695 23.094 19.400 1.00 0.00 C ATOM 312 O VAL 89 0.803 23.311 18.235 1.00 0.00 O ATOM 313 N VAL 90 1.221 22.046 19.951 1.00 0.00 N ATOM 314 CA VAL 90 2.049 21.060 19.263 1.00 0.00 C ATOM 315 C VAL 90 1.614 19.700 19.783 1.00 0.00 C ATOM 316 O VAL 90 1.401 19.625 20.999 1.00 0.00 O ATOM 317 N ASP 91 1.660 18.597 19.062 1.00 0.00 N ATOM 318 CA ASP 91 1.221 17.296 19.540 1.00 0.00 C ATOM 319 C ASP 91 2.176 16.566 20.464 1.00 0.00 C ATOM 320 O ASP 91 1.928 15.412 20.865 1.00 0.00 O ATOM 321 N GLU 92 3.398 17.068 20.611 1.00 0.00 N ATOM 322 CA GLU 92 4.421 16.262 21.299 1.00 0.00 C ATOM 323 C GLU 92 5.110 17.219 22.256 1.00 0.00 C ATOM 324 O GLU 92 4.855 18.397 22.064 1.00 0.00 O ATOM 325 N ASP 93 5.856 16.749 23.217 1.00 0.00 N ATOM 326 CA ASP 93 6.664 17.599 24.056 1.00 0.00 C ATOM 327 C ASP 93 8.135 17.268 23.716 1.00 0.00 C ATOM 328 O ASP 93 8.806 16.436 24.356 1.00 0.00 O ATOM 329 N LEU 94 8.741 18.134 22.909 1.00 0.00 N ATOM 330 CA LEU 94 10.139 17.979 22.528 1.00 0.00 C ATOM 331 C LEU 94 11.105 17.996 23.676 1.00 0.00 C ATOM 332 O LEU 94 12.234 17.533 23.485 1.00 0.00 O ATOM 333 N PRO 95 10.772 18.494 24.847 1.00 0.00 N ATOM 334 CA PRO 95 11.690 18.624 25.948 1.00 0.00 C ATOM 335 C PRO 95 11.676 17.461 26.917 1.00 0.00 C ATOM 336 O PRO 95 12.487 17.373 27.857 1.00 0.00 O ATOM 337 N GLU 96 10.824 16.488 26.648 1.00 0.00 N ATOM 338 CA GLU 96 10.476 15.380 27.520 1.00 0.00 C ATOM 339 C GLU 96 11.661 14.575 28.015 1.00 0.00 C ATOM 340 O GLU 96 11.729 14.252 29.197 1.00 0.00 O ATOM 341 N LYS 97 12.543 14.239 27.096 1.00 0.00 N ATOM 342 CA LYS 97 13.709 13.442 27.423 1.00 0.00 C ATOM 343 C LYS 97 14.830 14.256 28.038 1.00 0.00 C ATOM 344 O LYS 97 15.419 13.774 29.004 1.00 0.00 O ATOM 345 N VAL 98 15.087 15.472 27.596 1.00 0.00 N ATOM 346 CA VAL 98 16.217 16.286 27.987 1.00 0.00 C ATOM 347 C VAL 98 16.705 16.050 29.421 1.00 0.00 C ATOM 348 O VAL 98 17.892 16.291 29.704 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 348 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 43.81 83.9 168 84.0 200 ARMSMC SECONDARY STRUCTURE . . 33.29 94.1 119 93.0 128 ARMSMC SURFACE . . . . . . . . 48.86 81.4 102 79.7 128 ARMSMC BURIED . . . . . . . . 34.59 87.9 66 91.7 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 89 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 83 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 56 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 57 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 72 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 57 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.75 (Number of atoms: 87) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.75 87 86.1 101 CRMSCA CRN = ALL/NP . . . . . 0.0316 CRMSCA SECONDARY STRUCTURE . . 2.78 61 95.3 64 CRMSCA SURFACE . . . . . . . . 2.81 53 81.5 65 CRMSCA BURIED . . . . . . . . 2.64 34 94.4 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.58 348 69.3 502 CRMSMC SECONDARY STRUCTURE . . 2.56 244 76.7 318 CRMSMC SURFACE . . . . . . . . 2.68 212 65.8 322 CRMSMC BURIED . . . . . . . . 2.42 136 75.6 180 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 439 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 387 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 307 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 278 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 161 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.58 348 41.3 843 CRMSALL SECONDARY STRUCTURE . . 2.56 244 43.3 563 CRMSALL SURFACE . . . . . . . . 2.68 212 39.4 538 CRMSALL BURIED . . . . . . . . 2.42 136 44.6 305 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.336 1.000 0.500 87 86.1 101 ERRCA SECONDARY STRUCTURE . . 2.311 1.000 0.500 61 95.3 64 ERRCA SURFACE . . . . . . . . 2.453 1.000 0.500 53 81.5 65 ERRCA BURIED . . . . . . . . 2.153 1.000 0.500 34 94.4 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.229 1.000 0.500 348 69.3 502 ERRMC SECONDARY STRUCTURE . . 2.182 1.000 0.500 244 76.7 318 ERRMC SURFACE . . . . . . . . 2.357 1.000 0.500 212 65.8 322 ERRMC BURIED . . . . . . . . 2.030 1.000 0.500 136 75.6 180 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 439 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 387 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 307 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 278 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 161 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.229 1.000 0.500 348 41.3 843 ERRALL SECONDARY STRUCTURE . . 2.182 1.000 0.500 244 43.3 563 ERRALL SURFACE . . . . . . . . 2.357 1.000 0.500 212 39.4 538 ERRALL BURIED . . . . . . . . 2.030 1.000 0.500 136 44.6 305 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 11 47 69 78 87 87 101 DISTCA CA (P) 10.89 46.53 68.32 77.23 86.14 101 DISTCA CA (RMS) 0.81 1.45 1.78 2.16 2.75 DISTCA ALL (N) 38 195 280 331 348 348 843 DISTALL ALL (P) 4.51 23.13 33.21 39.26 41.28 843 DISTALL ALL (RMS) 0.84 1.43 1.76 2.31 2.58 DISTALL END of the results output