####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 36 ( 294), selected 36 , name T0618TS171_1-D1 # Molecule2: number of CA atoms 158 ( 1266), selected 36 , name T0618-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0618TS171_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 141 - 154 4.97 14.68 LCS_AVERAGE: 7.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 149 - 155 2.00 27.40 LCS_AVERAGE: 2.99 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 135 - 139 0.57 31.52 LCS_AVERAGE: 2.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 36 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Q 121 Q 121 3 3 10 3 3 3 3 3 4 4 5 7 7 8 9 9 10 12 12 12 14 14 14 LCS_GDT D 122 D 122 3 3 11 3 3 3 3 3 4 4 5 7 8 9 9 11 12 12 13 13 14 14 14 LCS_GDT I 123 I 123 3 3 11 3 3 3 3 4 4 4 5 7 8 9 9 11 12 12 13 14 17 18 18 LCS_GDT K 124 K 124 3 3 11 1 3 3 3 4 4 5 5 7 8 11 13 15 16 19 21 22 24 25 27 LCS_GDT D 125 D 125 3 3 11 3 3 3 3 4 6 6 7 7 8 11 13 15 16 18 19 21 23 25 26 LCS_GDT F 126 F 126 3 3 11 3 3 3 3 4 4 5 6 7 8 11 13 15 16 18 20 22 24 25 26 LCS_GDT I 127 I 127 3 3 11 3 3 3 3 4 4 5 6 7 8 11 13 16 19 20 23 24 25 27 27 LCS_GDT F 128 F 128 3 4 11 3 3 3 3 4 5 6 6 7 8 9 10 16 19 20 23 24 25 27 27 LCS_GDT V 129 V 129 3 4 11 3 3 3 4 4 5 6 6 7 8 11 13 16 19 20 23 24 25 27 27 LCS_GDT F 130 F 130 3 4 12 3 3 3 4 4 5 6 8 10 12 12 13 16 19 20 23 24 25 27 27 LCS_GDT Q 131 Q 131 3 6 12 0 3 3 4 6 6 8 8 10 12 12 13 16 19 20 23 24 25 27 27 LCS_GDT L 132 L 132 3 6 12 0 3 3 5 6 6 8 8 9 12 12 13 16 19 20 23 24 25 27 27 LCS_GDT G 133 G 133 4 6 12 3 4 4 5 6 6 8 8 10 12 12 13 16 19 20 23 24 25 27 27 LCS_GDT L 134 L 134 4 6 12 3 4 4 5 6 6 6 8 10 12 13 14 16 19 20 23 24 25 27 27 LCS_GDT N 135 N 135 5 6 12 4 5 5 5 6 6 8 8 9 11 13 14 16 19 20 23 24 25 27 27 LCS_GDT E 136 E 136 5 6 12 4 5 5 5 6 6 8 8 9 10 12 14 16 18 20 23 24 25 27 27 LCS_GDT T 137 T 137 5 5 12 4 5 5 5 5 6 6 7 8 8 10 11 12 16 18 20 23 25 25 27 LCS_GDT M 138 M 138 5 5 12 4 5 5 5 5 6 6 7 8 8 10 12 16 18 20 21 22 24 25 27 LCS_GDT N 139 N 139 5 5 12 4 5 5 5 5 6 8 8 9 10 10 11 14 16 18 21 23 25 27 27 LCS_GDT D 140 D 140 3 4 12 3 3 3 3 4 5 8 8 9 10 12 14 16 18 20 23 24 25 27 27 LCS_GDT S 141 S 141 3 4 14 0 3 3 3 4 5 8 8 9 10 12 14 16 18 20 21 24 25 27 27 LCS_GDT L 142 L 142 3 3 14 0 3 3 3 4 5 5 7 8 11 13 14 16 18 20 23 24 25 27 27 LCS_GDT A 143 A 143 3 3 14 3 3 3 3 4 5 6 6 9 11 13 14 16 19 20 23 24 25 27 27 LCS_GDT I 144 I 144 3 3 14 3 3 3 3 3 4 6 7 9 11 13 14 16 19 20 23 24 25 27 27 LCS_GDT C 145 C 145 3 3 14 3 3 4 4 4 5 7 7 9 12 13 14 16 19 20 23 24 25 27 27 LCS_GDT Q 146 Q 146 3 3 14 3 3 4 4 5 6 7 8 10 12 13 14 16 19 20 23 24 25 27 27 LCS_GDT E 147 E 147 4 5 14 3 3 4 4 5 6 7 8 10 12 13 14 16 19 20 22 24 25 27 27 LCS_GDT N 148 N 148 4 5 14 3 3 4 4 5 6 7 8 9 11 12 14 16 19 20 22 23 25 27 27 LCS_GDT F 149 F 149 4 7 14 3 3 4 4 5 7 7 8 10 12 12 13 16 19 20 23 24 25 27 27 LCS_GDT G 150 G 150 4 7 14 3 3 4 4 6 7 7 8 10 12 13 14 16 19 20 23 24 25 27 27 LCS_GDT L 151 L 151 4 7 14 3 4 5 5 6 7 7 8 10 12 13 14 16 19 20 23 24 25 27 27 LCS_GDT L 152 L 152 4 7 14 3 4 5 5 6 7 7 8 10 12 13 14 16 19 20 23 24 25 27 27 LCS_GDT W 153 W 153 4 7 14 3 4 5 5 6 7 7 8 9 10 13 14 16 18 20 23 24 25 27 27 LCS_GDT G 154 G 154 4 7 14 3 4 5 5 6 7 7 8 8 10 13 14 16 18 20 23 24 25 27 27 LCS_GDT Q 155 Q 155 3 7 13 3 3 5 5 6 7 7 8 8 10 10 10 16 18 20 21 22 25 25 27 LCS_GDT K 156 K 156 3 4 13 3 3 4 4 4 5 5 5 7 9 12 14 16 18 20 23 24 25 27 27 LCS_AVERAGE LCS_A: 4.40 ( 2.25 2.99 7.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 5 6 7 8 8 10 12 13 14 16 19 20 23 24 25 27 27 GDT PERCENT_AT 2.53 3.16 3.16 3.16 3.80 4.43 5.06 5.06 6.33 7.59 8.23 8.86 10.13 12.03 12.66 14.56 15.19 15.82 17.09 17.09 GDT RMS_LOCAL 0.17 0.57 0.57 0.57 1.62 2.00 2.86 2.58 3.52 3.77 4.31 4.47 4.95 5.38 5.54 6.26 6.38 6.41 6.77 6.77 GDT RMS_ALL_AT 32.40 31.52 31.52 31.52 25.96 27.40 18.87 18.71 12.50 12.38 15.09 14.73 15.39 10.01 9.90 10.19 10.26 12.24 10.16 10.16 # Checking swapping # possible swapping detected: D 122 D 122 # possible swapping detected: D 125 D 125 # possible swapping detected: D 140 D 140 # possible swapping detected: E 147 E 147 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Q 121 Q 121 30.990 0 0.490 0.875 34.522 0.000 0.000 LGA D 122 D 122 24.973 0 0.631 1.110 27.550 0.000 0.000 LGA I 123 I 123 23.729 0 0.620 0.893 24.966 0.000 0.000 LGA K 124 K 124 22.193 0 0.634 1.273 27.811 0.000 0.000 LGA D 125 D 125 16.119 0 0.623 1.247 18.008 0.000 0.000 LGA F 126 F 126 14.422 0 0.590 1.518 19.005 0.000 0.000 LGA I 127 I 127 14.993 0 0.694 1.513 18.160 0.000 0.000 LGA F 128 F 128 19.166 0 0.576 1.453 25.135 0.000 0.000 LGA V 129 V 129 17.349 0 0.034 0.076 17.829 0.000 0.000 LGA F 130 F 130 18.281 0 0.553 0.982 19.338 0.000 0.000 LGA Q 131 Q 131 22.115 0 0.691 0.876 27.104 0.000 0.000 LGA L 132 L 132 22.795 0 0.714 1.021 25.531 0.000 0.000 LGA G 133 G 133 23.560 0 0.717 0.717 23.940 0.000 0.000 LGA L 134 L 134 25.805 0 0.121 1.310 26.561 0.000 0.000 LGA N 135 N 135 27.343 0 0.619 0.580 30.122 0.000 0.000 LGA E 136 E 136 31.277 0 0.057 0.942 37.106 0.000 0.000 LGA T 137 T 137 33.321 0 0.173 1.040 37.398 0.000 0.000 LGA M 138 M 138 27.368 0 0.035 0.902 29.485 0.000 0.000 LGA N 139 N 139 24.888 0 0.368 0.520 26.367 0.000 0.000 LGA D 140 D 140 24.570 0 0.645 1.166 29.415 0.000 0.000 LGA S 141 S 141 19.430 0 0.629 0.600 21.008 0.000 0.000 LGA L 142 L 142 14.916 0 0.604 0.613 16.550 0.000 0.000 LGA A 143 A 143 13.188 0 0.609 0.596 13.981 0.000 0.000 LGA I 144 I 144 13.407 0 0.617 0.736 19.506 0.000 0.000 LGA C 145 C 145 7.746 0 0.615 0.568 9.523 13.810 14.286 LGA Q 146 Q 146 2.817 0 0.630 1.323 7.054 62.381 42.328 LGA E 147 E 147 2.894 0 0.606 1.227 10.518 66.905 34.339 LGA N 148 N 148 3.348 0 0.114 0.828 5.281 46.548 41.131 LGA F 149 F 149 6.612 0 0.554 1.276 15.908 19.762 7.619 LGA G 150 G 150 6.878 0 0.625 0.625 6.878 23.810 23.810 LGA L 151 L 151 1.758 0 0.060 1.208 6.330 63.214 46.548 LGA L 152 L 152 2.315 0 0.095 1.127 4.875 70.952 59.940 LGA W 153 W 153 1.497 0 0.649 1.320 4.715 71.429 56.122 LGA G 154 G 154 1.357 0 0.488 0.488 2.067 75.119 75.119 LGA Q 155 Q 155 3.646 0 0.627 1.443 10.270 32.976 18.677 LGA K 156 K 156 8.238 0 0.101 1.073 12.809 6.548 3.228 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 36 144 144 100.00 293 293 100.00 158 SUMMARY(RMSD_GDC): 9.322 9.363 10.538 3.503 2.678 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 36 158 4.0 8 2.58 6.487 5.380 0.298 LGA_LOCAL RMSD: 2.582 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.707 Number of assigned atoms: 36 Std_ASGN_ATOMS RMSD: 9.322 Standard rmsd on all 36 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.257610 * X + 0.850413 * Y + 0.458731 * Z + 26.316711 Y_new = 0.616183 * X + 0.510279 * Y + -0.599945 * Z + -27.253016 Z_new = -0.744282 * X + 0.128110 * Y + -0.655463 * Z + 28.814734 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.966786 0.839459 2.948576 [DEG: 112.6885 48.0975 168.9409 ] ZXZ: 0.652794 2.285592 -1.400341 [DEG: 37.4023 130.9548 -80.2336 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0618TS171_1-D1 REMARK 2: T0618-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0618TS171_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 36 158 4.0 8 2.58 5.380 9.32 REMARK ---------------------------------------------------------- MOLECULE T0618TS171_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0618 REMARK MODEL 1 REMARK PARENT 1k3b_C ATOM 1 N GLN 121 48.941 -23.854 -11.977 1.00 0.00 N ATOM 2 CA GLN 121 47.809 -22.936 -12.227 1.00 0.00 C ATOM 3 CB GLN 121 46.523 -23.449 -11.558 1.00 0.00 C ATOM 4 CG GLN 121 46.020 -24.782 -12.108 1.00 0.00 C ATOM 5 CD GLN 121 44.756 -25.145 -11.338 1.00 0.00 C ATOM 6 OE1 GLN 121 44.683 -26.190 -10.695 1.00 0.00 O ATOM 7 NE2 GLN 121 43.729 -24.257 -11.408 1.00 0.00 N ATOM 8 C GLN 121 48.090 -21.601 -11.642 1.00 0.00 C ATOM 9 O GLN 121 49.242 -21.196 -11.481 1.00 0.00 O ATOM 10 N ASP 122 47.014 -20.870 -11.307 1.00 0.00 N ATOM 11 CA ASP 122 47.183 -19.581 -10.722 1.00 0.00 C ATOM 12 CB ASP 122 45.861 -18.804 -10.607 1.00 0.00 C ATOM 13 CG ASP 122 45.372 -18.534 -12.024 1.00 0.00 C ATOM 14 OD1 ASP 122 46.223 -18.563 -12.956 1.00 0.00 O ATOM 15 OD2 ASP 122 44.148 -18.304 -12.198 1.00 0.00 O ATOM 16 C ASP 122 47.710 -19.818 -9.349 1.00 0.00 C ATOM 17 O ASP 122 47.430 -20.848 -8.739 1.00 0.00 O ATOM 18 N ILE 123 48.522 -18.877 -8.833 1.00 0.00 N ATOM 19 CA ILE 123 49.042 -19.069 -7.517 1.00 0.00 C ATOM 20 CB ILE 123 50.537 -19.143 -7.448 1.00 0.00 C ATOM 21 CG2 ILE 123 51.110 -17.753 -7.774 1.00 0.00 C ATOM 22 CG1 ILE 123 50.959 -19.696 -6.079 1.00 0.00 C ATOM 23 CD1 ILE 123 50.524 -21.146 -5.863 1.00 0.00 C ATOM 24 C ILE 123 48.604 -17.901 -6.708 1.00 0.00 C ATOM 25 O ILE 123 48.622 -16.763 -7.173 1.00 0.00 O ATOM 26 N LYS 124 48.164 -18.168 -5.467 1.00 0.00 N ATOM 27 CA LYS 124 47.691 -17.113 -4.631 1.00 0.00 C ATOM 28 CB LYS 124 46.636 -17.599 -3.620 1.00 0.00 C ATOM 29 CG LYS 124 45.439 -18.281 -4.295 1.00 0.00 C ATOM 30 CD LYS 124 44.739 -17.412 -5.346 1.00 0.00 C ATOM 31 CE LYS 124 43.506 -18.074 -5.971 1.00 0.00 C ATOM 32 NZ LYS 124 42.959 -17.227 -7.055 1.00 0.00 N ATOM 33 C LYS 124 48.873 -16.568 -3.892 1.00 0.00 C ATOM 34 O LYS 124 49.851 -17.278 -3.665 1.00 0.00 O ATOM 35 N ASP 125 48.823 -15.272 -3.525 1.00 0.00 N ATOM 36 CA ASP 125 49.916 -14.689 -2.803 1.00 0.00 C ATOM 37 CB ASP 125 49.887 -13.151 -2.757 1.00 0.00 C ATOM 38 CG ASP 125 50.202 -12.639 -4.154 1.00 0.00 C ATOM 39 OD1 ASP 125 50.637 -13.467 -4.999 1.00 0.00 O ATOM 40 OD2 ASP 125 50.004 -11.419 -4.396 1.00 0.00 O ATOM 41 C ASP 125 49.823 -15.196 -1.405 1.00 0.00 C ATOM 42 O ASP 125 48.799 -15.742 -1.003 1.00 0.00 O ATOM 43 N PHE 126 50.915 -15.049 -0.631 1.00 0.00 N ATOM 44 CA PHE 126 50.897 -15.540 0.714 1.00 0.00 C ATOM 45 CB PHE 126 52.251 -16.119 1.163 1.00 0.00 C ATOM 46 CG PHE 126 52.545 -17.323 0.335 1.00 0.00 C ATOM 47 CD1 PHE 126 53.027 -17.190 -0.947 1.00 0.00 C ATOM 48 CD2 PHE 126 52.347 -18.585 0.849 1.00 0.00 C ATOM 49 CE1 PHE 126 53.300 -18.301 -1.710 1.00 0.00 C ATOM 50 CE2 PHE 126 52.620 -19.699 0.090 1.00 0.00 C ATOM 51 CZ PHE 126 53.095 -19.557 -1.192 1.00 0.00 C ATOM 52 C PHE 126 50.610 -14.388 1.623 1.00 0.00 C ATOM 53 O PHE 126 51.401 -13.449 1.716 1.00 0.00 O ATOM 54 N ILE 127 49.451 -14.424 2.309 1.00 0.00 N ATOM 55 CA ILE 127 49.108 -13.413 3.265 1.00 0.00 C ATOM 56 CB ILE 127 48.019 -12.483 2.802 1.00 0.00 C ATOM 57 CG2 ILE 127 46.751 -13.315 2.544 1.00 0.00 C ATOM 58 CG1 ILE 127 47.825 -11.336 3.803 1.00 0.00 C ATOM 59 CD1 ILE 127 49.004 -10.366 3.857 1.00 0.00 C ATOM 60 C ILE 127 48.607 -14.153 4.458 1.00 0.00 C ATOM 61 O ILE 127 48.025 -15.229 4.320 1.00 0.00 O ATOM 62 N PHE 128 48.846 -13.627 5.672 1.00 0.00 N ATOM 63 CA PHE 128 48.382 -14.366 6.804 1.00 0.00 C ATOM 64 CB PHE 128 49.502 -14.622 7.819 1.00 0.00 C ATOM 65 CG PHE 128 50.531 -15.401 7.070 1.00 0.00 C ATOM 66 CD1 PHE 128 51.509 -14.748 6.355 1.00 0.00 C ATOM 67 CD2 PHE 128 50.514 -16.776 7.057 1.00 0.00 C ATOM 68 CE1 PHE 128 52.464 -15.448 5.656 1.00 0.00 C ATOM 69 CE2 PHE 128 51.468 -17.482 6.360 1.00 0.00 C ATOM 70 CZ PHE 128 52.447 -16.820 5.658 1.00 0.00 C ATOM 71 C PHE 128 47.299 -13.567 7.452 1.00 0.00 C ATOM 72 O PHE 128 47.531 -12.476 7.971 1.00 0.00 O ATOM 73 N VAL 129 46.066 -14.106 7.400 1.00 0.00 N ATOM 74 CA VAL 129 44.907 -13.465 7.944 1.00 0.00 C ATOM 75 CB VAL 129 43.625 -14.154 7.586 1.00 0.00 C ATOM 76 CG1 VAL 129 42.469 -13.420 8.290 1.00 0.00 C ATOM 77 CG2 VAL 129 43.501 -14.191 6.053 1.00 0.00 C ATOM 78 C VAL 129 44.989 -13.445 9.424 1.00 0.00 C ATOM 79 O VAL 129 44.628 -12.446 10.036 1.00 0.00 O ATOM 80 N PHE 130 45.446 -14.552 10.042 1.00 0.00 N ATOM 81 CA PHE 130 45.526 -14.624 11.470 1.00 0.00 C ATOM 82 CB PHE 130 46.681 -13.833 12.101 1.00 0.00 C ATOM 83 CG PHE 130 47.887 -14.687 11.933 1.00 0.00 C ATOM 84 CD1 PHE 130 48.511 -14.826 10.716 1.00 0.00 C ATOM 85 CD2 PHE 130 48.390 -15.357 13.022 1.00 0.00 C ATOM 86 CE1 PHE 130 49.622 -15.627 10.591 1.00 0.00 C ATOM 87 CE2 PHE 130 49.499 -16.158 12.902 1.00 0.00 C ATOM 88 CZ PHE 130 50.118 -16.294 11.686 1.00 0.00 C ATOM 89 C PHE 130 44.216 -14.240 12.070 1.00 0.00 C ATOM 90 O PHE 130 43.184 -14.276 11.398 1.00 0.00 O ATOM 91 N GLN 131 44.231 -13.909 13.372 1.00 0.00 N ATOM 92 CA GLN 131 43.026 -13.620 14.096 1.00 0.00 C ATOM 93 CB GLN 131 43.144 -13.888 15.599 1.00 0.00 C ATOM 94 CG GLN 131 44.101 -12.900 16.272 1.00 0.00 C ATOM 95 CD GLN 131 44.117 -13.175 17.766 1.00 0.00 C ATOM 96 OE1 GLN 131 44.409 -12.284 18.564 1.00 0.00 O ATOM 97 NE2 GLN 131 43.808 -14.439 18.160 1.00 0.00 N ATOM 98 C GLN 131 42.696 -12.166 14.002 1.00 0.00 C ATOM 99 O GLN 131 43.563 -11.319 13.794 1.00 0.00 O ATOM 100 N LEU 132 41.390 -11.857 14.144 1.00 0.00 N ATOM 101 CA LEU 132 40.914 -10.507 14.171 1.00 0.00 C ATOM 102 CB LEU 132 40.154 -10.101 12.896 1.00 0.00 C ATOM 103 CG LEU 132 41.025 -10.168 11.627 1.00 0.00 C ATOM 104 CD1 LEU 132 41.461 -11.612 11.326 1.00 0.00 C ATOM 105 CD2 LEU 132 40.336 -9.489 10.433 1.00 0.00 C ATOM 106 C LEU 132 39.954 -10.457 15.313 1.00 0.00 C ATOM 107 O LEU 132 39.306 -11.460 15.617 1.00 0.00 O ATOM 108 N GLY 133 39.846 -9.307 16.005 1.00 0.00 N ATOM 109 CA GLY 133 38.925 -9.257 17.103 1.00 0.00 C ATOM 110 C GLY 133 38.770 -7.832 17.518 1.00 0.00 C ATOM 111 O GLY 133 39.642 -7.005 17.268 1.00 0.00 O ATOM 112 N LEU 134 37.631 -7.519 18.169 1.00 0.00 N ATOM 113 CA LEU 134 37.378 -6.182 18.612 1.00 0.00 C ATOM 114 CB LEU 134 36.085 -5.587 18.027 1.00 0.00 C ATOM 115 CG LEU 134 36.018 -5.639 16.488 1.00 0.00 C ATOM 116 CD1 LEU 134 34.752 -4.948 15.959 1.00 0.00 C ATOM 117 CD2 LEU 134 37.306 -5.119 15.836 1.00 0.00 C ATOM 118 C LEU 134 37.181 -6.254 20.090 1.00 0.00 C ATOM 119 O LEU 134 36.469 -7.125 20.586 1.00 0.00 O ATOM 120 N ASN 135 37.824 -5.344 20.846 1.00 0.00 N ATOM 121 CA ASN 135 37.645 -5.374 22.266 1.00 0.00 C ATOM 122 CB ASN 135 38.682 -4.525 23.024 1.00 0.00 C ATOM 123 CG ASN 135 38.567 -4.836 24.510 1.00 0.00 C ATOM 124 OD1 ASN 135 38.081 -4.017 25.289 1.00 0.00 O ATOM 125 ND2 ASN 135 39.011 -6.053 24.921 1.00 0.00 N ATOM 126 C ASN 135 36.281 -4.822 22.530 1.00 0.00 C ATOM 127 O ASN 135 35.893 -3.811 21.955 1.00 0.00 O ATOM 128 N GLU 136 35.494 -5.485 23.397 1.00 0.00 N ATOM 129 CA GLU 136 34.165 -4.991 23.621 1.00 0.00 C ATOM 130 CB GLU 136 33.346 -5.862 24.586 1.00 0.00 C ATOM 131 CG GLU 136 32.981 -7.248 24.058 1.00 0.00 C ATOM 132 CD GLU 136 32.129 -7.914 25.130 1.00 0.00 C ATOM 133 OE1 GLU 136 31.926 -7.276 26.199 1.00 0.00 O ATOM 134 OE2 GLU 136 31.662 -9.060 24.899 1.00 0.00 O ATOM 135 C GLU 136 34.221 -3.641 24.264 1.00 0.00 C ATOM 136 O GLU 136 33.608 -2.691 23.779 1.00 0.00 O ATOM 137 N THR 137 34.974 -3.524 25.375 1.00 0.00 N ATOM 138 CA THR 137 34.999 -2.297 26.118 1.00 0.00 C ATOM 139 CB THR 137 35.756 -2.419 27.404 1.00 0.00 C ATOM 140 OG1 THR 137 35.146 -3.398 28.235 1.00 0.00 O ATOM 141 CG2 THR 137 35.767 -1.048 28.100 1.00 0.00 C ATOM 142 C THR 137 35.639 -1.197 25.341 1.00 0.00 C ATOM 143 O THR 137 35.045 -0.137 25.145 1.00 0.00 O ATOM 144 N MET 138 36.875 -1.429 24.865 1.00 0.00 N ATOM 145 CA MET 138 37.588 -0.398 24.173 1.00 0.00 C ATOM 146 CB MET 138 39.047 -0.760 23.882 1.00 0.00 C ATOM 147 CG MET 138 39.923 0.487 23.772 1.00 0.00 C ATOM 148 SD MET 138 40.161 1.328 25.369 1.00 0.00 S ATOM 149 CE MET 138 40.909 2.836 24.692 1.00 0.00 C ATOM 150 C MET 138 36.888 -0.163 22.877 1.00 0.00 C ATOM 151 O MET 138 36.786 0.967 22.398 1.00 0.00 O ATOM 152 N ASN 139 36.367 -1.258 22.297 1.00 0.00 N ATOM 153 CA ASN 139 35.660 -1.237 21.051 1.00 0.00 C ATOM 154 CB ASN 139 34.446 -0.295 21.051 1.00 0.00 C ATOM 155 CG ASN 139 33.512 -0.773 19.947 1.00 0.00 C ATOM 156 OD1 ASN 139 33.668 -0.457 18.768 1.00 0.00 O ATOM 157 ND2 ASN 139 32.500 -1.588 20.347 1.00 0.00 N ATOM 158 C ASN 139 36.594 -0.834 19.961 1.00 0.00 C ATOM 159 O ASN 139 36.190 -0.244 18.961 1.00 0.00 O ATOM 160 N ASP 140 37.888 -1.159 20.119 1.00 0.00 N ATOM 161 CA ASP 140 38.818 -0.853 19.077 1.00 0.00 C ATOM 162 CB ASP 140 40.150 -0.277 19.588 1.00 0.00 C ATOM 163 CG ASP 140 39.853 1.135 20.072 1.00 0.00 C ATOM 164 OD1 ASP 140 39.046 1.830 19.393 1.00 0.00 O ATOM 165 OD2 ASP 140 40.419 1.542 21.117 1.00 0.00 O ATOM 166 C ASP 140 39.091 -2.124 18.346 1.00 0.00 C ATOM 167 O ASP 140 39.130 -3.202 18.940 1.00 0.00 O ATOM 168 N SER 141 39.254 -2.027 17.013 1.00 0.00 N ATOM 169 CA SER 141 39.501 -3.193 16.220 1.00 0.00 C ATOM 170 CB SER 141 39.330 -2.968 14.708 1.00 0.00 C ATOM 171 OG SER 141 40.322 -2.066 14.241 1.00 0.00 O ATOM 172 C SER 141 40.911 -3.622 16.445 1.00 0.00 C ATOM 173 O SER 141 41.795 -2.805 16.701 1.00 0.00 O ATOM 174 N LEU 142 41.142 -4.946 16.362 1.00 0.00 N ATOM 175 CA LEU 142 42.446 -5.496 16.563 1.00 0.00 C ATOM 176 CB LEU 142 42.585 -6.159 17.947 1.00 0.00 C ATOM 177 CG LEU 142 43.960 -6.773 18.233 1.00 0.00 C ATOM 178 CD1 LEU 142 45.050 -5.691 18.292 1.00 0.00 C ATOM 179 CD2 LEU 142 43.912 -7.637 19.503 1.00 0.00 C ATOM 180 C LEU 142 42.620 -6.557 15.527 1.00 0.00 C ATOM 181 O LEU 142 41.665 -7.240 15.156 1.00 0.00 O ATOM 182 N ALA 143 43.842 -6.711 14.993 1.00 0.00 N ATOM 183 CA ALA 143 43.972 -7.755 14.024 1.00 0.00 C ATOM 184 CB ALA 143 43.706 -7.288 12.585 1.00 0.00 C ATOM 185 C ALA 143 45.361 -8.278 14.073 1.00 0.00 C ATOM 186 O ALA 143 46.299 -7.569 14.427 1.00 0.00 O ATOM 187 N ILE 144 45.515 -9.569 13.738 1.00 0.00 N ATOM 188 CA ILE 144 46.819 -10.146 13.640 1.00 0.00 C ATOM 189 CB ILE 144 46.997 -11.431 14.400 1.00 0.00 C ATOM 190 CG2 ILE 144 48.351 -12.026 13.985 1.00 0.00 C ATOM 191 CG1 ILE 144 46.875 -11.210 15.916 1.00 0.00 C ATOM 192 CD1 ILE 144 47.962 -10.297 16.482 1.00 0.00 C ATOM 193 C ILE 144 46.993 -10.477 12.193 1.00 0.00 C ATOM 194 O ILE 144 46.179 -11.191 11.609 1.00 0.00 O ATOM 195 N CYS 145 48.049 -9.941 11.555 1.00 0.00 N ATOM 196 CA CYS 145 48.217 -10.241 10.164 1.00 0.00 C ATOM 197 CB CYS 145 47.704 -9.116 9.250 1.00 0.00 C ATOM 198 SG CYS 145 47.912 -9.476 7.481 1.00 0.00 S ATOM 199 C CYS 145 49.678 -10.394 9.908 1.00 0.00 C ATOM 200 O CYS 145 50.503 -9.771 10.571 1.00 0.00 O ATOM 201 N GLN 146 50.046 -11.259 8.945 1.00 0.00 N ATOM 202 CA GLN 146 51.439 -11.358 8.635 1.00 0.00 C ATOM 203 CB GLN 146 51.977 -12.791 8.500 1.00 0.00 C ATOM 204 CG GLN 146 52.106 -13.532 9.832 1.00 0.00 C ATOM 205 CD GLN 146 53.311 -12.956 10.564 1.00 0.00 C ATOM 206 OE1 GLN 146 53.863 -11.928 10.174 1.00 0.00 O ATOM 207 NE2 GLN 146 53.737 -13.640 11.659 1.00 0.00 N ATOM 208 C GLN 146 51.628 -10.680 7.324 1.00 0.00 C ATOM 209 O GLN 146 50.975 -11.007 6.333 1.00 0.00 O ATOM 210 N GLU 147 52.528 -9.683 7.311 1.00 0.00 N ATOM 211 CA GLU 147 52.799 -8.904 6.142 1.00 0.00 C ATOM 212 CB GLU 147 53.217 -7.464 6.485 1.00 0.00 C ATOM 213 CG GLU 147 53.273 -6.520 5.286 1.00 0.00 C ATOM 214 CD GLU 147 53.382 -5.103 5.831 1.00 0.00 C ATOM 215 OE1 GLU 147 54.455 -4.753 6.390 1.00 0.00 O ATOM 216 OE2 GLU 147 52.377 -4.352 5.696 1.00 0.00 O ATOM 217 C GLU 147 53.891 -9.561 5.364 1.00 0.00 C ATOM 218 O GLU 147 54.684 -10.335 5.896 1.00 0.00 O ATOM 219 N ASN 148 53.906 -9.285 4.048 1.00 0.00 N ATOM 220 CA ASN 148 54.845 -9.839 3.122 1.00 0.00 C ATOM 221 CB ASN 148 54.417 -9.611 1.660 1.00 0.00 C ATOM 222 CG ASN 148 55.214 -10.562 0.778 1.00 0.00 C ATOM 223 OD1 ASN 148 55.416 -11.722 1.130 1.00 0.00 O ATOM 224 ND2 ASN 148 55.676 -10.064 -0.400 1.00 0.00 N ATOM 225 C ASN 148 56.219 -9.254 3.279 1.00 0.00 C ATOM 226 O ASN 148 57.206 -9.974 3.150 1.00 0.00 O ATOM 227 N PHE 149 56.330 -7.940 3.574 1.00 0.00 N ATOM 228 CA PHE 149 57.630 -7.331 3.477 1.00 0.00 C ATOM 229 CB PHE 149 57.590 -5.860 3.037 1.00 0.00 C ATOM 230 CG PHE 149 57.238 -5.831 1.592 1.00 0.00 C ATOM 231 CD1 PHE 149 58.221 -6.008 0.646 1.00 0.00 C ATOM 232 CD2 PHE 149 55.939 -5.628 1.182 1.00 0.00 C ATOM 233 CE1 PHE 149 57.913 -5.984 -0.692 1.00 0.00 C ATOM 234 CE2 PHE 149 55.628 -5.604 -0.157 1.00 0.00 C ATOM 235 CZ PHE 149 56.615 -5.780 -1.093 1.00 0.00 C ATOM 236 C PHE 149 58.434 -7.350 4.736 1.00 0.00 C ATOM 237 O PHE 149 58.216 -6.563 5.656 1.00 0.00 O ATOM 238 N GLY 150 59.398 -8.287 4.787 1.00 0.00 N ATOM 239 CA GLY 150 60.443 -8.285 5.767 1.00 0.00 C ATOM 240 C GLY 150 59.986 -8.739 7.107 1.00 0.00 C ATOM 241 O GLY 150 58.946 -8.319 7.611 1.00 0.00 O ATOM 242 N LEU 151 60.797 -9.623 7.716 1.00 0.00 N ATOM 243 CA LEU 151 60.634 -10.053 9.069 1.00 0.00 C ATOM 244 CB LEU 151 61.446 -11.321 9.418 1.00 0.00 C ATOM 245 CG LEU 151 62.946 -11.302 9.058 1.00 0.00 C ATOM 246 CD1 LEU 151 63.157 -11.166 7.541 1.00 0.00 C ATOM 247 CD2 LEU 151 63.739 -10.276 9.886 1.00 0.00 C ATOM 248 C LEU 151 61.056 -8.913 9.941 1.00 0.00 C ATOM 249 O LEU 151 60.557 -8.732 11.049 1.00 0.00 O ATOM 250 N LEU 152 62.003 -8.104 9.430 1.00 0.00 N ATOM 251 CA LEU 152 62.574 -7.021 10.175 1.00 0.00 C ATOM 252 CB LEU 152 63.630 -6.253 9.349 1.00 0.00 C ATOM 253 CG LEU 152 64.380 -5.101 10.061 1.00 0.00 C ATOM 254 CD1 LEU 152 63.472 -3.908 10.412 1.00 0.00 C ATOM 255 CD2 LEU 152 65.184 -5.625 11.261 1.00 0.00 C ATOM 256 C LEU 152 61.483 -6.071 10.536 1.00 0.00 C ATOM 257 O LEU 152 61.403 -5.621 11.679 1.00 0.00 O ATOM 258 N TRP 153 60.592 -5.756 9.581 1.00 0.00 N ATOM 259 CA TRP 153 59.575 -4.793 9.874 1.00 0.00 C ATOM 260 CB TRP 153 58.890 -4.235 8.609 1.00 0.00 C ATOM 261 CG TRP 153 58.052 -2.994 8.824 1.00 0.00 C ATOM 262 CD2 TRP 153 56.656 -2.968 9.173 1.00 0.00 C ATOM 263 CD1 TRP 153 58.445 -1.693 8.717 1.00 0.00 C ATOM 264 NE1 TRP 153 57.385 -0.857 8.978 1.00 0.00 N ATOM 265 CE2 TRP 153 56.281 -1.627 9.258 1.00 0.00 C ATOM 266 CE3 TRP 153 55.762 -3.974 9.400 1.00 0.00 C ATOM 267 CZ2 TRP 153 54.999 -1.269 9.577 1.00 0.00 C ATOM 268 CZ3 TRP 153 54.471 -3.611 9.721 1.00 0.00 C ATOM 269 CH2 TRP 153 54.100 -2.284 9.809 1.00 0.00 C ATOM 270 C TRP 153 58.542 -5.478 10.708 1.00 0.00 C ATOM 271 O TRP 153 58.242 -6.653 10.502 1.00 0.00 O ATOM 272 N GLY 154 57.989 -4.761 11.706 1.00 0.00 N ATOM 273 CA GLY 154 56.962 -5.332 12.528 1.00 0.00 C ATOM 274 C GLY 154 57.564 -6.437 13.332 1.00 0.00 C ATOM 275 O GLY 154 58.719 -6.362 13.748 1.00 0.00 O ATOM 276 N GLN 155 56.773 -7.502 13.578 1.00 0.00 N ATOM 277 CA GLN 155 57.271 -8.601 14.344 1.00 0.00 C ATOM 278 CB GLN 155 56.208 -9.337 15.183 1.00 0.00 C ATOM 279 CG GLN 155 55.130 -10.054 14.362 1.00 0.00 C ATOM 280 CD GLN 155 54.008 -9.069 14.055 1.00 0.00 C ATOM 281 OE1 GLN 155 54.210 -8.029 13.430 1.00 0.00 O ATOM 282 NE2 GLN 155 52.775 -9.408 14.519 1.00 0.00 N ATOM 283 C GLN 155 57.834 -9.597 13.389 1.00 0.00 C ATOM 284 O GLN 155 57.224 -9.923 12.371 1.00 0.00 O ATOM 285 N LYS 156 59.037 -10.103 13.710 1.00 0.00 N ATOM 286 CA LYS 156 59.700 -11.062 12.886 1.00 0.00 C ATOM 287 CB LYS 156 61.111 -11.389 13.407 1.00 0.00 C ATOM 288 CG LYS 156 61.180 -11.486 14.936 1.00 0.00 C ATOM 289 CD LYS 156 60.419 -12.661 15.547 1.00 0.00 C ATOM 290 CE LYS 156 60.392 -12.616 17.075 1.00 0.00 C ATOM 291 NZ LYS 156 61.766 -12.409 17.587 1.00 0.00 N ATOM 292 C LYS 156 58.878 -12.342 12.847 1.00 0.00 C ATOM 293 O LYS 156 59.121 -13.157 11.919 1.00 0.00 O ATOM 294 OXT LYS 156 57.995 -12.519 13.729 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 293 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 105.22 39.1 46 14.8 311 ARMSMC SECONDARY STRUCTURE . . 101.75 45.0 40 17.5 229 ARMSMC SURFACE . . . . . . . . 109.58 33.3 18 9.6 188 ARMSMC BURIED . . . . . . . . 102.31 42.9 28 22.8 123 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.28 50.0 18 13.5 133 ARMSSC1 RELIABLE SIDE CHAINS . 76.43 47.1 17 13.8 123 ARMSSC1 SECONDARY STRUCTURE . . 73.44 50.0 16 16.5 97 ARMSSC1 SURFACE . . . . . . . . 82.97 42.9 7 8.8 80 ARMSSC1 BURIED . . . . . . . . 68.18 54.5 11 20.8 53 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.16 14.3 14 14.0 100 ARMSSC2 RELIABLE SIDE CHAINS . 86.24 20.0 10 12.8 78 ARMSSC2 SECONDARY STRUCTURE . . 91.73 16.7 12 16.7 72 ARMSSC2 SURFACE . . . . . . . . 102.61 0.0 7 11.3 62 ARMSSC2 BURIED . . . . . . . . 87.07 28.6 7 18.4 38 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.15 0.0 2 5.7 35 ARMSSC3 RELIABLE SIDE CHAINS . 95.15 0.0 2 6.1 33 ARMSSC3 SECONDARY STRUCTURE . . 95.15 0.0 2 9.1 22 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 BURIED . . . . . . . . 95.15 0.0 2 40.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 14 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.32 (Number of atoms: 36) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.32 36 22.8 158 CRMSCA CRN = ALL/NP . . . . . 0.2590 CRMSCA SECONDARY STRUCTURE . . 9.64 32 27.6 116 CRMSCA SURFACE . . . . . . . . 9.14 17 17.9 95 CRMSCA BURIED . . . . . . . . 9.48 19 30.2 63 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.46 177 22.5 785 CRMSMC SECONDARY STRUCTURE . . 9.77 158 27.3 578 CRMSMC SURFACE . . . . . . . . 9.32 83 17.6 471 CRMSMC BURIED . . . . . . . . 9.58 94 29.9 314 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.56 149 23.5 634 CRMSSC RELIABLE SIDE CHAINS . 11.48 123 22.4 550 CRMSSC SECONDARY STRUCTURE . . 11.84 137 28.5 481 CRMSSC SURFACE . . . . . . . . 12.20 69 18.1 382 CRMSSC BURIED . . . . . . . . 10.98 80 31.7 252 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.54 293 23.1 1266 CRMSALL SECONDARY STRUCTURE . . 10.85 265 28.0 945 CRMSALL SURFACE . . . . . . . . 10.78 137 18.0 762 CRMSALL BURIED . . . . . . . . 10.33 156 31.0 504 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.534 1.000 0.500 36 22.8 158 ERRCA SECONDARY STRUCTURE . . 8.831 1.000 0.500 32 27.6 116 ERRCA SURFACE . . . . . . . . 8.042 1.000 0.500 17 17.9 95 ERRCA BURIED . . . . . . . . 8.974 1.000 0.500 19 30.2 63 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.649 1.000 0.500 177 22.5 785 ERRMC SECONDARY STRUCTURE . . 8.939 1.000 0.500 158 27.3 578 ERRMC SURFACE . . . . . . . . 8.231 1.000 0.500 83 17.6 471 ERRMC BURIED . . . . . . . . 9.018 1.000 0.500 94 29.9 314 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.597 1.000 0.500 149 23.5 634 ERRSC RELIABLE SIDE CHAINS . 10.515 1.000 0.500 123 22.4 550 ERRSC SECONDARY STRUCTURE . . 10.868 1.000 0.500 137 28.5 481 ERRSC SURFACE . . . . . . . . 10.985 1.000 0.500 69 18.1 382 ERRSC BURIED . . . . . . . . 10.263 1.000 0.500 80 31.7 252 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.603 1.000 0.500 293 23.1 1266 ERRALL SECONDARY STRUCTURE . . 9.901 1.000 0.500 265 28.0 945 ERRALL SURFACE . . . . . . . . 9.525 1.000 0.500 137 18.0 762 ERRALL BURIED . . . . . . . . 9.670 1.000 0.500 156 31.0 504 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 6 24 36 158 DISTCA CA (P) 0.00 0.00 1.27 3.80 15.19 158 DISTCA CA (RMS) 0.00 0.00 2.45 4.01 6.69 DISTCA ALL (N) 0 3 12 32 166 293 1266 DISTALL ALL (P) 0.00 0.24 0.95 2.53 13.11 1266 DISTALL ALL (RMS) 0.00 1.59 2.33 3.56 6.81 DISTALL END of the results output