####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 25 ( 211), selected 25 , name T0616TS436_1-D1 # Molecule2: number of CA atoms 97 ( 804), selected 25 , name T0616-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0616TS436_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 85 - 100 4.87 8.86 LONGEST_CONTINUOUS_SEGMENT: 16 88 - 103 4.77 12.48 LCS_AVERAGE: 15.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 92 - 97 1.91 23.21 LONGEST_CONTINUOUS_SEGMENT: 6 98 - 103 1.52 16.03 LCS_AVERAGE: 5.15 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 98 - 102 0.90 11.88 LCS_AVERAGE: 3.79 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 25 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 79 E 79 3 3 11 2 3 3 4 6 6 7 8 10 10 13 13 15 17 19 22 23 24 24 25 LCS_GDT Y 80 Y 80 3 4 11 3 3 5 6 7 7 8 8 10 10 11 13 15 18 20 22 23 24 24 25 LCS_GDT D 81 D 81 3 5 11 3 3 3 4 6 7 8 9 10 11 13 13 16 18 20 22 23 24 24 25 LCS_GDT R 82 R 82 3 5 11 3 3 5 6 7 7 8 9 10 11 13 13 16 18 20 22 23 24 24 25 LCS_GDT N 83 N 83 3 5 11 3 3 4 5 6 6 7 8 10 10 13 13 15 18 20 22 23 24 24 25 LCS_GDT T 84 T 84 3 5 12 3 3 4 4 6 6 7 8 10 11 13 13 16 18 20 22 23 24 24 25 LCS_GDT A 85 A 85 3 5 16 3 4 5 6 6 7 7 9 10 11 13 14 16 18 20 22 23 24 24 25 LCS_GDT M 86 M 86 3 3 16 3 4 5 6 6 7 8 9 10 12 13 14 16 18 20 22 23 24 24 25 LCS_GDT N 87 N 87 3 3 16 0 3 3 3 3 4 8 9 10 12 13 14 16 18 20 22 23 24 24 25 LCS_GDT T 88 T 88 3 3 16 0 3 3 3 4 6 8 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT I 89 I 89 3 4 16 0 3 4 4 4 6 6 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT K 90 K 90 3 4 16 3 3 4 4 4 4 6 8 10 12 14 15 15 17 20 22 23 24 24 25 LCS_GDT M 91 M 91 4 4 16 3 3 4 4 4 5 5 7 9 10 14 15 15 17 19 19 21 24 24 25 LCS_GDT V 92 V 92 4 6 16 3 3 4 5 6 6 6 8 10 12 14 15 15 17 19 22 23 24 24 25 LCS_GDT K 93 K 93 4 6 16 3 3 4 4 4 6 6 7 10 12 14 15 15 17 20 22 23 24 24 25 LCS_GDT K 94 K 94 4 6 16 3 3 4 5 6 6 8 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT L 95 L 95 4 6 16 3 4 4 5 6 6 8 9 10 12 12 13 14 17 19 22 23 24 24 25 LCS_GDT G 96 G 96 4 6 16 3 4 4 5 6 6 8 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT F 97 F 97 4 6 16 3 4 4 5 6 6 8 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT R 98 R 98 5 6 16 3 4 5 6 7 7 8 9 10 12 13 15 16 18 20 22 23 24 24 25 LCS_GDT I 99 I 99 5 6 16 3 4 5 6 7 7 8 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT E 100 E 100 5 6 16 3 4 5 6 7 7 8 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT K 101 K 101 5 6 16 3 4 5 6 7 7 8 9 10 12 14 15 16 18 20 22 23 24 24 25 LCS_GDT E 102 E 102 5 6 16 3 3 5 6 7 7 8 9 10 12 14 15 16 18 20 21 23 24 24 25 LCS_GDT D 103 D 103 3 6 16 3 3 4 6 6 6 6 7 10 12 14 15 15 17 19 21 22 24 24 25 LCS_AVERAGE LCS_A: 8.08 ( 3.79 5.15 15.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 7 7 8 9 10 12 14 15 16 18 20 22 23 24 24 25 GDT PERCENT_AT 3.09 4.12 5.15 6.19 7.22 7.22 8.25 9.28 10.31 12.37 14.43 15.46 16.49 18.56 20.62 22.68 23.71 24.74 24.74 25.77 GDT RMS_LOCAL 0.03 0.40 0.79 1.12 1.39 1.39 1.82 2.83 3.21 3.74 4.27 4.40 5.19 5.53 5.77 6.15 6.28 6.43 6.43 6.60 GDT RMS_ALL_AT 17.25 9.73 10.52 10.45 10.43 10.43 10.53 8.75 8.59 10.10 12.16 13.05 6.99 6.86 6.76 7.01 6.66 6.62 6.62 6.60 # Checking swapping # possible swapping detected: E 79 E 79 # possible swapping detected: D 103 D 103 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 79 E 79 13.907 0 0.134 0.773 21.061 0.000 0.000 LGA Y 80 Y 80 14.613 0 0.505 1.544 22.368 0.000 0.000 LGA D 81 D 81 10.074 0 0.148 1.162 11.395 0.357 6.667 LGA R 82 R 82 7.012 0 0.191 1.040 13.706 8.571 5.325 LGA N 83 N 83 9.572 0 0.476 0.968 11.258 1.190 1.190 LGA T 84 T 84 8.001 0 0.618 0.575 8.839 6.905 6.054 LGA A 85 A 85 3.535 0 0.600 0.587 4.947 39.048 44.190 LGA M 86 M 86 2.258 0 0.613 0.621 7.575 59.881 39.405 LGA N 87 N 87 3.452 0 0.581 0.683 9.706 69.286 38.869 LGA T 88 T 88 2.861 0 0.571 0.672 4.914 55.357 49.456 LGA I 89 I 89 5.563 0 0.652 1.645 11.635 27.619 15.595 LGA K 90 K 90 6.803 0 0.594 0.705 17.810 16.310 7.778 LGA M 91 M 91 8.475 0 0.581 0.836 13.410 7.262 3.631 LGA V 92 V 92 8.348 0 0.105 0.224 12.038 7.500 4.286 LGA K 93 K 93 8.322 0 0.135 1.074 15.858 12.619 5.608 LGA K 94 K 94 2.878 0 0.244 0.579 4.912 58.571 58.307 LGA L 95 L 95 5.376 0 0.334 1.174 12.020 29.524 15.714 LGA G 96 G 96 2.863 0 0.422 0.422 3.445 55.476 55.476 LGA F 97 F 97 0.481 0 0.159 0.943 3.119 90.595 78.268 LGA R 98 R 98 2.916 0 0.362 1.101 11.679 55.476 24.848 LGA I 99 I 99 3.047 0 0.246 1.281 5.641 36.905 47.560 LGA E 100 E 100 9.387 0 0.405 1.288 12.130 2.857 1.905 LGA K 101 K 101 12.705 0 0.163 0.859 21.429 0.000 0.000 LGA E 102 E 102 15.549 0 0.161 1.020 16.291 0.000 0.000 LGA D 103 D 103 17.913 0 0.196 1.011 18.666 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 25 100 100 100.00 210 210 100.00 97 SUMMARY(RMSD_GDC): 6.602 6.439 8.305 6.611 5.259 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 25 97 4.0 9 2.83 10.567 8.944 0.307 LGA_LOCAL RMSD: 2.832 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.751 Number of assigned atoms: 25 Std_ASGN_ATOMS RMSD: 6.602 Standard rmsd on all 25 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.166970 * X + -0.569306 * Y + 0.804992 * Z + -25.034883 Y_new = -0.879570 * X + 0.282909 * Y + 0.382518 * Z + 1.704484 Z_new = -0.445509 * X + -0.771915 * Y + -0.453507 * Z + 43.263699 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.383197 0.461743 -2.101980 [DEG: -79.2514 26.4559 -120.4346 ] ZXZ: 2.014393 2.041492 -2.618145 [DEG: 115.4162 116.9689 -150.0087 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0616TS436_1-D1 REMARK 2: T0616-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0616TS436_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 25 97 4.0 9 2.83 8.944 6.60 REMARK ---------------------------------------------------------- MOLECULE T0616TS436_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0616 REMARK MODEL 1 REFINED REMARK PARENT 2VOV_A ATOM 1 CA GLU 79 -12.200 -14.075 16.153 1.00 4.07 C ATOM 2 N GLU 79 -11.017 -13.332 15.965 1.00 4.07 N ATOM 5 C GLU 79 -12.565 -14.935 14.916 1.00 4.07 C ATOM 6 O GLU 79 -12.420 -16.175 15.007 1.00 4.07 O ATOM 7 CB GLU 79 -13.398 -13.143 16.536 1.00 4.07 C ATOM 10 CG GLU 79 -13.160 -12.383 17.881 1.00 4.07 C ATOM 13 CD GLU 79 -14.380 -11.549 18.326 1.00 4.07 C ATOM 14 OE1 GLU 79 -14.312 -10.866 19.383 1.00 4.07 O ATOM 15 OE2 GLU 79 -15.442 -11.548 17.650 1.00 4.07 O ATOM 16 CA TYR 80 -13.345 -15.073 12.654 1.00 4.07 C ATOM 17 N TYR 80 -13.044 -14.350 13.844 1.00 4.07 N ATOM 20 C TYR 80 -12.013 -15.512 11.975 1.00 4.07 C ATOM 21 O TYR 80 -11.785 -15.210 10.779 1.00 4.07 O ATOM 22 CB TYR 80 -14.231 -14.156 11.721 1.00 4.07 C ATOM 25 CG TYR 80 -15.724 -14.425 11.863 1.00 4.07 C ATOM 26 CD1 TYR 80 -16.465 -14.885 10.759 1.00 4.07 C ATOM 27 CD2 TYR 80 -16.379 -14.196 13.084 1.00 4.07 C ATOM 30 CE1 TYR 80 -17.842 -15.111 10.874 1.00 4.07 C ATOM 31 CE2 TYR 80 -17.757 -14.423 13.198 1.00 4.07 C ATOM 34 CZ TYR 80 -18.489 -14.880 12.094 1.00 4.07 C ATOM 35 OH TYR 80 -19.773 -15.089 12.196 1.00 4.07 H ATOM 37 CA ASP 81 -9.800 -15.683 12.768 1.00 4.07 C ATOM 38 N ASP 81 -11.141 -16.142 12.719 1.00 4.07 N ATOM 41 C ASP 81 -9.653 -14.131 12.626 1.00 4.07 C ATOM 42 O ASP 81 -9.260 -13.487 13.623 1.00 4.07 O ATOM 43 CB ASP 81 -8.850 -16.526 11.849 1.00 4.07 C ATOM 46 CG ASP 81 -9.194 -16.515 10.346 1.00 4.07 C ATOM 47 OD1 ASP 81 -8.971 -15.490 9.650 1.00 4.07 O ATOM 48 OD2 ASP 81 -9.674 -17.546 9.805 1.00 4.07 O ATOM 49 CA ARG 82 -9.925 -12.174 11.215 1.00 4.07 C ATOM 50 N ARG 82 -9.942 -13.571 11.484 1.00 4.07 N ATOM 53 C ARG 82 -8.619 -11.375 11.471 1.00 4.07 C ATOM 54 O ARG 82 -8.575 -10.205 11.019 1.00 4.07 O ATOM 55 CB ARG 82 -11.179 -11.406 11.752 1.00 4.07 C ATOM 58 CG ARG 82 -11.229 -11.227 13.302 1.00 4.07 C ATOM 61 CD ARG 82 -12.245 -10.125 13.735 1.00 4.07 C ATOM 64 NE ARG 82 -13.522 -10.398 13.198 1.00 4.07 N ATOM 66 CZ ARG 82 -14.714 -10.400 13.924 1.00 4.07 C ATOM 67 NH1 ARG 82 -15.807 -10.794 13.322 1.00 4.07 H ATOM 68 NH2 ARG 82 -14.785 -10.012 15.176 1.00 4.07 H ATOM 73 CA ASN 83 -6.320 -11.359 12.081 1.00 4.07 C ATOM 74 N ASN 83 -7.625 -11.919 12.132 1.00 4.07 N ATOM 77 C ASN 83 -5.750 -11.361 10.620 1.00 4.07 C ATOM 78 O ASN 83 -4.719 -12.016 10.370 1.00 4.07 O ATOM 79 CB ASN 83 -5.435 -12.177 13.087 1.00 4.07 C ATOM 82 CG ASN 83 -4.119 -11.464 13.460 1.00 4.07 C ATOM 83 OD1 ASN 83 -3.304 -11.197 12.605 1.00 4.07 O ATOM 84 ND2 ASN 83 -3.856 -11.139 14.779 1.00 4.07 N ATOM 87 N THR 84 -6.382 -10.650 9.714 1.00 6.05 N ATOM 88 CA THR 84 -6.167 -10.768 8.310 1.00 6.03 C ATOM 89 C THR 84 -6.950 -9.616 7.584 1.00 7.67 C ATOM 90 O THR 84 -7.745 -8.925 8.253 1.00 9.25 O ATOM 93 CB THR 84 -6.670 -12.184 7.807 1.00 4.07 C ATOM 95 OG1 THR 84 -5.815 -13.292 8.365 1.00 4.07 O ATOM 97 CG2 THR 84 -6.673 -12.369 6.258 1.00 4.07 C ATOM 101 N ALA 85 -6.722 -9.417 6.297 1.00 2.02 N ATOM 102 CA ALA 85 -7.630 -8.792 5.381 1.00 1.91 C ATOM 103 C ALA 85 -6.943 -7.697 4.516 1.00 1.86 C ATOM 104 O ALA 85 -5.864 -7.209 4.902 1.00 2.44 O ATOM 105 CB ALA 85 -8.969 -8.209 5.949 1.00 1.91 C ATOM 111 N MET 86 -7.531 -7.361 3.390 1.00 1.32 N ATOM 112 CA MET 86 -7.030 -6.362 2.509 1.00 1.38 C ATOM 113 C MET 86 -8.167 -5.386 2.100 1.00 1.69 C ATOM 114 O MET 86 -9.351 -5.718 2.313 1.00 2.43 O ATOM 115 CB MET 86 -6.466 -7.039 1.211 1.00 0.94 C ATOM 120 CG MET 86 -5.139 -7.840 1.437 1.00 4.07 C ATOM 123 SD MET 86 -3.631 -6.823 1.159 1.00 4.07 S ATOM 124 CE MET 86 -3.365 -5.871 2.702 1.00 4.07 C ATOM 128 N ASN 87 -7.825 -4.240 1.566 1.00 1.28 N ATOM 129 CA ASN 87 -8.772 -3.297 1.080 1.00 1.43 C ATOM 130 C ASN 87 -8.406 -2.859 -0.368 1.00 1.33 C ATOM 131 O ASN 87 -7.349 -3.279 -0.880 1.00 1.26 O ATOM 132 CB ASN 87 -8.779 -2.035 2.013 1.00 1.62 C ATOM 133 CG ASN 87 -9.359 -2.279 3.426 1.00 1.43 C ATOM 138 OD1 ASN 87 -9.786 -3.363 3.746 1.00 4.07 O ATOM 139 ND2 ASN 87 -9.403 -1.235 4.334 1.00 4.07 N ATOM 142 N THR 88 -9.242 -2.065 -0.993 1.00 1.56 N ATOM 143 CA THR 88 -8.930 -1.409 -2.220 1.00 1.67 C ATOM 144 C THR 88 -8.921 0.130 -1.920 1.00 2.05 C ATOM 145 O THR 88 -9.334 0.521 -0.808 1.00 3.06 O ATOM 146 CB THR 88 -9.976 -1.842 -3.312 1.00 1.67 C ATOM 147 OG1 THR 88 -10.161 -3.337 -3.263 1.00 1.57 O ATOM 148 CG2 THR 88 -9.522 -1.465 -4.754 1.00 1.62 C ATOM 156 N ILE 89 -8.447 0.951 -2.826 1.00 1.44 N ATOM 157 CA ILE 89 -8.531 2.374 -2.704 1.00 1.62 C ATOM 158 C ILE 89 -9.606 2.884 -3.695 1.00 1.65 C ATOM 159 O ILE 89 -9.983 2.087 -4.576 1.00 1.90 O ATOM 160 CB ILE 89 -7.136 3.064 -2.957 1.00 1.70 C ATOM 164 CG1 ILE 89 -6.680 3.154 -4.462 1.00 4.07 C ATOM 167 CG2 ILE 89 -6.022 2.460 -2.043 1.00 4.07 C ATOM 171 CD1 ILE 89 -6.500 1.796 -5.203 1.00 4.07 C ATOM 175 N LYS 90 -10.091 4.105 -3.607 1.00 1.50 N ATOM 176 CA LYS 90 -11.168 4.461 -4.459 1.00 1.37 C ATOM 177 C LYS 90 -11.563 5.954 -4.530 1.00 0.84 C ATOM 178 O LYS 90 -11.740 6.634 -3.489 1.00 1.14 O ATOM 179 CB LYS 90 -12.486 3.615 -4.267 1.00 1.50 C ATOM 180 CG LYS 90 -13.373 3.716 -5.567 1.00 1.29 C ATOM 181 CD LYS 90 -14.587 2.741 -5.609 1.00 1.24 C ATOM 182 CE LYS 90 -15.420 3.013 -6.903 1.00 1.09 C ATOM 183 NZ LYS 90 -16.578 2.021 -7.021 1.00 0.98 N ATOM 197 N MET 91 -11.844 6.368 -5.737 1.00 0.43 N ATOM 198 CA MET 91 -12.457 7.608 -6.013 1.00 0.76 C ATOM 199 C MET 91 -12.734 7.608 -7.516 1.00 1.18 C ATOM 200 O MET 91 -11.878 8.149 -8.263 1.00 0.65 O ATOM 201 CB MET 91 -11.560 8.845 -5.709 1.00 1.14 C ATOM 202 CG MET 91 -12.258 10.239 -5.890 1.00 1.78 C ATOM 209 SD MET 91 -11.909 11.005 -7.526 1.00 4.07 S ATOM 210 CE MET 91 -12.376 12.765 -7.318 1.00 4.07 C ATOM 214 CA VAL 92 -13.911 6.602 -9.316 1.00 4.07 C ATOM 215 N VAL 92 -13.788 7.006 -7.963 1.00 4.07 N ATOM 218 C VAL 92 -12.756 5.609 -9.624 1.00 4.07 C ATOM 219 O VAL 92 -13.044 4.424 -9.861 1.00 4.07 O ATOM 220 CB VAL 92 -14.045 7.804 -10.326 1.00 4.07 C ATOM 222 CG1 VAL 92 -14.457 7.296 -11.744 1.00 4.07 C ATOM 223 CG2 VAL 92 -15.098 8.850 -9.827 1.00 4.07 C ATOM 230 CA LYS 93 -10.418 5.176 -9.327 1.00 4.07 C ATOM 231 N LYS 93 -11.520 6.039 -9.545 1.00 4.07 N ATOM 234 C LYS 93 -9.577 5.428 -8.024 1.00 4.07 C ATOM 235 O LYS 93 -8.872 4.459 -7.696 1.00 4.07 O ATOM 236 CB LYS 93 -9.489 5.202 -10.584 1.00 4.07 C ATOM 239 CG LYS 93 -10.112 4.394 -11.773 1.00 4.07 C ATOM 242 CD LYS 93 -9.173 4.263 -13.019 1.00 4.07 C ATOM 245 CE LYS 93 -7.769 3.648 -12.715 1.00 4.07 C ATOM 248 NZ LYS 93 -7.873 2.384 -11.856 1.00 4.07 N ATOM 252 CA LYS 94 -8.518 6.767 -6.338 1.00 4.07 C ATOM 253 N LYS 94 -9.566 6.569 -7.326 1.00 4.07 N ATOM 256 C LYS 94 -8.796 7.407 -4.902 1.00 4.07 C ATOM 257 O LYS 94 -8.881 6.611 -3.936 1.00 4.07 O ATOM 258 CB LYS 94 -7.301 7.423 -7.076 1.00 4.07 C ATOM 261 CG LYS 94 -5.947 7.086 -6.375 1.00 4.07 C ATOM 264 CD LYS 94 -4.731 7.666 -7.162 1.00 4.07 C ATOM 267 CE LYS 94 -3.403 7.377 -6.402 1.00 4.07 C ATOM 270 NZ LYS 94 -2.220 7.952 -7.182 1.00 4.07 N ATOM 274 CA LEU 95 -8.862 9.320 -3.403 1.00 4.07 C ATOM 275 N LEU 95 -8.840 8.720 -4.715 1.00 4.07 N ATOM 278 C LEU 95 -10.213 10.033 -2.981 1.00 4.07 C ATOM 279 O LEU 95 -10.265 11.275 -3.051 1.00 4.07 O ATOM 280 CB LEU 95 -7.731 10.406 -3.269 1.00 4.07 C ATOM 283 CG LEU 95 -6.268 9.900 -3.513 1.00 4.07 C ATOM 284 CD1 LEU 95 -5.289 10.448 -2.423 1.00 4.07 C ATOM 285 CD2 LEU 95 -5.764 10.360 -4.919 1.00 4.07 C ATOM 293 CA GLY 96 -12.469 9.981 -2.230 1.00 4.07 C ATOM 294 N GLY 96 -11.241 9.338 -2.553 1.00 4.07 N ATOM 298 C GLY 96 -13.597 9.032 -1.753 1.00 4.07 C ATOM 299 O GLY 96 -14.215 9.328 -0.701 1.00 4.07 O ATOM 300 N PHE 97 -13.872 7.973 -2.461 1.00 1.50 N ATOM 301 CA PHE 97 -14.999 7.162 -2.177 1.00 1.40 C ATOM 302 C PHE 97 -14.735 6.298 -0.920 1.00 0.75 C ATOM 303 O PHE 97 -13.587 6.309 -0.418 1.00 0.92 O ATOM 306 CB PHE 97 -15.313 6.361 -3.498 1.00 4.07 C ATOM 309 CG PHE 97 -16.657 5.641 -3.611 1.00 4.07 C ATOM 310 CD1 PHE 97 -17.662 6.154 -4.455 1.00 4.07 C ATOM 311 CD2 PHE 97 -16.874 4.411 -2.968 1.00 4.07 C ATOM 312 CE1 PHE 97 -18.865 5.459 -4.636 1.00 4.07 C ATOM 313 CE2 PHE 97 -18.081 3.720 -3.145 1.00 4.07 C ATOM 314 CZ PHE 97 -19.077 4.243 -3.977 1.00 4.07 C ATOM 320 CA ARG 98 -15.730 5.180 0.935 1.00 4.07 C ATOM 321 N ARG 98 -15.745 5.648 -0.404 1.00 4.07 N ATOM 324 C ARG 98 -14.780 3.964 1.217 1.00 4.07 C ATOM 325 O ARG 98 -15.279 2.892 1.643 1.00 4.07 O ATOM 326 CB ARG 98 -17.205 4.939 1.421 1.00 4.07 C ATOM 329 CG ARG 98 -18.086 4.056 0.474 1.00 4.07 C ATOM 332 CD ARG 98 -19.428 3.667 1.177 1.00 4.07 C ATOM 335 NE ARG 98 -20.358 3.110 0.273 1.00 4.07 N ATOM 337 CZ ARG 98 -20.211 1.860 -0.324 1.00 4.07 C ATOM 338 NH1 ARG 98 -21.114 1.463 -1.185 1.00 4.07 H ATOM 339 NH2 ARG 98 -19.202 1.067 -0.047 1.00 4.07 H ATOM 344 CA ILE 99 -12.813 4.710 2.227 1.00 4.07 C ATOM 345 N ILE 99 -13.472 4.168 1.092 1.00 4.07 N ATOM 348 C ILE 99 -11.349 5.050 1.834 1.00 4.07 C ATOM 349 O ILE 99 -10.392 4.298 2.125 1.00 4.07 O ATOM 350 CB ILE 99 -13.006 4.024 3.638 1.00 4.07 C ATOM 352 CG1 ILE 99 -12.793 5.120 4.748 1.00 4.07 C ATOM 355 CG2 ILE 99 -12.090 2.774 3.859 1.00 4.07 C ATOM 359 CD1 ILE 99 -13.110 4.628 6.186 1.00 4.07 C ATOM 363 N GLU 100 -11.225 6.157 1.163 1.00 1.93 N ATOM 364 CA GLU 100 -9.998 6.624 0.644 1.00 1.96 C ATOM 365 C GLU 100 -8.863 7.005 1.691 1.00 2.28 C ATOM 366 O GLU 100 -8.379 8.153 1.641 1.00 2.66 O ATOM 367 CB GLU 100 -10.426 7.908 -0.139 1.00 1.60 C ATOM 372 CG GLU 100 -11.028 9.025 0.806 1.00 4.07 C ATOM 375 CD GLU 100 -10.448 10.446 0.612 1.00 4.07 C ATOM 376 OE1 GLU 100 -10.983 11.416 1.213 1.00 4.07 O ATOM 377 OE2 GLU 100 -9.445 10.648 -0.119 1.00 4.07 O ATOM 378 N LYS 101 -8.435 6.114 2.553 1.00 2.11 N ATOM 379 CA LYS 101 -7.280 6.305 3.384 1.00 2.16 C ATOM 380 C LYS 101 -7.302 7.396 4.502 1.00 2.85 C ATOM 381 O LYS 101 -7.509 8.582 4.183 1.00 2.77 O ATOM 382 CB LYS 101 -5.933 6.479 2.581 1.00 2.07 C ATOM 387 CG LYS 101 -5.524 5.162 1.835 1.00 4.07 C ATOM 390 CD LYS 101 -4.012 5.156 1.434 1.00 4.07 C ATOM 393 CE LYS 101 -3.600 3.784 0.815 1.00 4.07 C ATOM 396 NZ LYS 101 -2.101 3.752 0.511 1.00 4.07 N ATOM 400 N GLU 102 -6.977 7.022 5.724 1.00 3.94 N ATOM 401 CA GLU 102 -6.511 7.933 6.722 1.00 4.86 C ATOM 402 C GLU 102 -5.896 7.142 7.926 1.00 5.35 C ATOM 403 O GLU 102 -6.046 5.905 7.967 1.00 4.91 O ATOM 404 CB GLU 102 -7.639 8.893 7.237 1.00 4.69 C ATOM 405 CG GLU 102 -8.806 8.168 7.982 1.00 4.37 C ATOM 406 CD GLU 102 -9.673 7.330 7.024 1.00 4.16 C ATOM 413 OE1 GLU 102 -9.781 6.088 7.190 1.00 4.07 O ATOM 414 OE2 GLU 102 -10.280 7.890 6.072 1.00 4.07 O ATOM 415 N ASP 103 -5.243 7.802 8.858 1.00 26.55 N ATOM 416 CA ASP 103 -4.788 7.157 10.041 1.00 24.86 C ATOM 417 C ASP 103 -6.001 6.751 10.913 1.00 23.73 C ATOM 418 O ASP 103 -6.195 5.564 11.190 1.00 22.79 O ATOM 419 CB ASP 103 -3.842 8.102 10.861 1.00 25.38 C ATOM 420 CG ASP 103 -3.242 7.459 12.136 1.00 24.77 C ATOM 421 OXT ASP 103 -6.822 7.665 11.361 1.00 4.07 O ATOM 426 OD1 ASP 103 -2.475 8.132 12.870 1.00 4.07 O ATOM 427 OD2 ASP 103 -3.510 6.265 12.444 1.00 4.07 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 210 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.72 18.8 48 25.0 192 ARMSMC SECONDARY STRUCTURE . . 103.03 19.4 31 41.9 74 ARMSMC SURFACE . . . . . . . . 84.08 21.4 42 27.3 154 ARMSMC BURIED . . . . . . . . 133.49 0.0 6 15.8 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.41 34.8 23 25.8 89 ARMSSC1 RELIABLE SIDE CHAINS . 99.51 31.8 22 26.2 84 ARMSSC1 SECONDARY STRUCTURE . . 83.14 46.7 15 45.5 33 ARMSSC1 SURFACE . . . . . . . . 97.24 33.3 21 28.4 74 ARMSSC1 BURIED . . . . . . . . 99.07 50.0 2 13.3 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.30 40.0 20 26.0 77 ARMSSC2 RELIABLE SIDE CHAINS . 75.17 41.2 17 27.4 62 ARMSSC2 SECONDARY STRUCTURE . . 78.67 41.7 12 44.4 27 ARMSSC2 SURFACE . . . . . . . . 67.04 38.9 18 27.7 65 ARMSSC2 BURIED . . . . . . . . 101.90 50.0 2 16.7 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.05 54.5 11 33.3 33 ARMSSC3 RELIABLE SIDE CHAINS . 72.05 54.5 11 34.4 32 ARMSSC3 SECONDARY STRUCTURE . . 66.24 71.4 7 41.2 17 ARMSSC3 SURFACE . . . . . . . . 75.28 50.0 10 32.3 31 ARMSSC3 BURIED . . . . . . . . 20.79 100.0 1 50.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 108.86 16.7 6 40.0 15 ARMSSC4 RELIABLE SIDE CHAINS . 108.86 16.7 6 40.0 15 ARMSSC4 SECONDARY STRUCTURE . . 91.41 25.0 4 50.0 8 ARMSSC4 SURFACE . . . . . . . . 108.86 16.7 6 42.9 14 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.60 (Number of atoms: 25) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.60 25 25.8 97 CRMSCA CRN = ALL/NP . . . . . 0.2641 CRMSCA SECONDARY STRUCTURE . . 6.61 16 43.2 37 CRMSCA SURFACE . . . . . . . . 6.80 22 28.2 78 CRMSCA BURIED . . . . . . . . 4.93 3 15.8 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.73 124 25.7 482 CRMSMC SECONDARY STRUCTURE . . 6.73 80 43.2 185 CRMSMC SURFACE . . . . . . . . 6.94 109 28.1 388 CRMSMC BURIED . . . . . . . . 4.98 15 16.0 94 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.76 110 26.4 416 CRMSSC RELIABLE SIDE CHAINS . 9.65 102 27.7 368 CRMSSC SECONDARY STRUCTURE . . 9.80 69 42.6 162 CRMSSC SURFACE . . . . . . . . 9.94 101 29.5 342 CRMSSC BURIED . . . . . . . . 7.56 9 12.2 74 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.35 210 26.1 804 CRMSALL SECONDARY STRUCTURE . . 8.34 133 42.9 310 CRMSALL SURFACE . . . . . . . . 8.56 189 28.9 654 CRMSALL BURIED . . . . . . . . 6.16 21 14.0 150 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.644 0.351 0.189 25 25.8 97 ERRCA SECONDARY STRUCTURE . . 3.305 0.365 0.183 16 43.2 37 ERRCA SURFACE . . . . . . . . 3.722 0.336 0.184 22 28.2 78 ERRCA BURIED . . . . . . . . 3.072 0.458 0.229 3 15.8 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.729 0.354 0.193 124 25.7 482 ERRMC SECONDARY STRUCTURE . . 3.414 0.368 0.186 80 43.2 185 ERRMC SURFACE . . . . . . . . 3.828 0.342 0.189 109 28.1 388 ERRMC BURIED . . . . . . . . 3.015 0.440 0.224 15 16.0 94 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.706 0.400 0.209 110 26.4 416 ERRSC RELIABLE SIDE CHAINS . 5.622 0.398 0.208 102 27.7 368 ERRSC SECONDARY STRUCTURE . . 5.837 0.439 0.220 69 42.6 162 ERRSC SURFACE . . . . . . . . 5.869 0.402 0.210 101 29.5 342 ERRSC BURIED . . . . . . . . 3.871 0.379 0.189 9 12.2 74 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.634 0.371 0.197 210 26.1 804 ERRALL SECONDARY STRUCTURE . . 4.525 0.396 0.199 133 42.9 310 ERRALL SURFACE . . . . . . . . 4.783 0.368 0.197 189 28.9 654 ERRALL BURIED . . . . . . . . 3.295 0.401 0.204 21 14.0 150 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 25 25 97 DISTCA CA (P) 0.00 0.00 1.03 5.15 25.77 97 DISTCA CA (RMS) 0.00 0.00 2.70 3.75 6.60 DISTCA ALL (N) 0 1 8 37 170 210 804 DISTALL ALL (P) 0.00 0.12 1.00 4.60 21.14 804 DISTALL ALL (RMS) 0.00 1.15 2.46 3.86 6.72 DISTALL END of the results output