####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 264), selected 31 , name T0616TS301_1-D1 # Molecule2: number of CA atoms 97 ( 804), selected 31 , name T0616-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0616TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 61 - 87 4.90 8.21 LCS_AVERAGE: 23.15 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 70 - 87 0.73 10.94 LCS_AVERAGE: 13.70 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 70 - 87 0.73 10.94 LCS_AVERAGE: 12.57 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 54 G 54 3 4 10 0 3 3 3 3 4 4 5 7 8 8 8 9 9 9 9 9 9 10 10 LCS_GDT E 55 E 55 3 7 10 0 3 4 6 7 7 7 8 8 8 8 8 9 9 9 10 11 11 11 13 LCS_GDT K 56 K 56 5 7 10 3 5 5 6 7 7 7 8 8 8 8 8 9 10 10 13 13 15 15 15 LCS_GDT R 57 R 57 5 7 21 3 5 5 6 7 7 7 8 8 8 8 8 21 22 24 24 25 27 28 28 LCS_GDT D 58 D 58 5 7 23 3 5 5 6 8 9 11 13 15 17 18 18 23 23 24 25 27 27 28 28 LCS_GDT D 59 D 59 5 7 23 3 5 5 7 11 12 12 14 19 19 20 21 23 23 24 25 27 27 28 28 LCS_GDT I 60 I 60 5 7 23 3 5 5 6 7 7 7 9 12 13 15 16 19 20 22 25 27 27 28 28 LCS_GDT H 61 H 61 4 7 24 3 3 5 6 7 7 7 8 10 13 15 16 19 20 21 23 27 27 28 28 LCS_GDT K 62 K 62 4 7 24 3 3 5 6 6 7 7 8 9 10 11 16 17 20 21 24 27 27 28 28 LCS_GDT K 63 K 63 4 7 24 3 3 5 6 6 6 7 8 10 13 15 16 19 20 22 25 27 27 28 28 LCS_GDT H 64 H 64 4 7 24 3 3 5 6 7 10 12 14 15 18 21 21 23 23 24 25 27 27 28 28 LCS_GDT P 65 P 65 4 7 24 3 3 4 6 6 8 12 14 15 16 21 21 23 23 24 25 27 27 28 28 LCS_GDT C 66 C 66 3 7 24 3 3 5 6 6 8 11 14 17 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT Y 70 Y 70 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT D 71 D 71 18 18 24 4 15 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT E 72 E 72 18 18 24 4 11 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT L 73 L 73 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT P 74 P 74 18 18 24 6 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT E 75 E 75 18 18 24 6 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT E 76 E 76 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT E 77 E 77 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT K 78 K 78 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT E 79 E 79 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT Y 80 Y 80 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT D 81 D 81 18 18 24 7 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT R 82 R 82 18 18 24 7 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT N 83 N 83 18 18 24 6 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT T 84 T 84 18 18 24 5 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT A 85 A 85 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT M 86 M 86 18 18 24 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_GDT N 87 N 87 18 18 24 8 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 LCS_AVERAGE LCS_A: 16.47 ( 12.57 13.70 23.15 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 16 18 18 18 18 18 18 19 19 21 21 23 23 24 25 27 27 28 28 GDT PERCENT_AT 9.28 16.49 18.56 18.56 18.56 18.56 18.56 18.56 19.59 19.59 21.65 21.65 23.71 23.71 24.74 25.77 27.84 27.84 28.87 28.87 GDT RMS_LOCAL 0.38 0.61 0.73 0.73 0.73 0.73 0.73 0.73 2.06 2.06 3.03 3.03 3.86 3.86 4.18 4.72 5.26 5.26 5.48 5.48 GDT RMS_ALL_AT 10.79 10.97 10.94 10.94 10.94 10.94 10.94 10.94 9.34 9.97 9.14 9.14 7.79 7.79 7.52 7.60 7.68 7.68 7.48 7.48 # Checking swapping # possible swapping detected: D 59 D 59 # possible swapping detected: D 71 D 71 # possible swapping detected: E 75 E 75 # possible swapping detected: E 76 E 76 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 54 G 54 25.400 0 0.530 0.530 25.756 0.000 0.000 LGA E 55 E 55 25.770 0 0.286 0.486 30.561 0.000 0.000 LGA K 56 K 56 23.728 0 0.454 0.676 33.674 0.000 0.000 LGA R 57 R 57 16.678 0 0.219 1.058 19.493 0.000 0.000 LGA D 58 D 58 16.617 0 0.598 0.894 21.173 0.000 0.000 LGA D 59 D 59 10.410 0 0.361 1.081 12.413 0.000 3.810 LGA I 60 I 60 16.245 0 0.384 0.796 21.679 0.000 0.000 LGA H 61 H 61 16.544 0 0.250 0.967 24.347 0.000 0.000 LGA K 62 K 62 11.582 0 0.129 0.703 15.792 0.000 0.000 LGA K 63 K 63 12.763 0 0.505 0.798 16.042 0.000 0.000 LGA H 64 H 64 10.904 0 0.281 1.070 12.514 0.119 0.095 LGA P 65 P 65 10.591 0 0.617 0.575 11.440 0.000 0.000 LGA C 66 C 66 9.910 0 0.681 0.698 12.074 3.095 2.063 LGA Y 70 Y 70 0.816 0 0.069 0.064 2.705 88.214 77.500 LGA D 71 D 71 1.009 0 0.024 0.888 3.844 83.929 72.798 LGA E 72 E 72 1.183 0 0.117 0.850 1.839 83.810 82.593 LGA L 73 L 73 0.287 0 0.143 1.249 2.906 95.357 86.726 LGA P 74 P 74 1.074 0 0.168 0.301 1.626 83.690 81.497 LGA E 75 E 75 0.992 0 0.028 1.216 5.742 90.476 67.354 LGA E 76 E 76 0.332 0 0.078 0.706 1.863 97.619 87.725 LGA E 77 E 77 0.472 0 0.013 0.199 1.148 97.619 91.640 LGA K 78 K 78 0.521 0 0.074 0.548 2.632 92.857 85.873 LGA E 79 E 79 0.457 0 0.078 0.757 2.297 100.000 85.979 LGA Y 80 Y 80 0.465 0 0.084 0.220 1.529 92.976 88.373 LGA D 81 D 81 0.517 0 0.077 0.065 0.734 92.857 95.238 LGA R 82 R 82 0.803 0 0.075 1.371 6.625 90.476 69.697 LGA N 83 N 83 1.064 0 0.030 0.040 2.295 88.214 80.595 LGA T 84 T 84 0.590 0 0.041 1.049 2.377 95.238 87.007 LGA A 85 A 85 0.294 0 0.077 0.088 0.446 100.000 100.000 LGA M 86 M 86 0.549 0 0.052 0.906 3.640 92.857 85.774 LGA N 87 N 87 0.719 0 0.024 0.768 2.801 90.476 80.893 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 264 264 100.00 97 SUMMARY(RMSD_GDC): 7.062 7.034 7.877 17.112 15.600 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 97 4.0 18 0.73 19.845 18.310 2.165 LGA_LOCAL RMSD: 0.731 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.938 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.062 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.733343 * X + -0.630323 * Y + -0.254757 * Z + -11.612588 Y_new = -0.232563 * X + 0.584695 * Y + -0.777204 * Z + -12.011989 Z_new = 0.638845 * X + -0.510710 * Y + -0.575372 * Z + 5.358837 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.834497 -0.692996 -2.415662 [DEG: -162.4047 -39.7057 -138.4072 ] ZXZ: -0.316751 2.183855 2.245188 [DEG: -18.1485 125.1257 128.6398 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0616TS301_1-D1 REMARK 2: T0616-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0616TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 97 4.0 18 0.73 18.310 7.06 REMARK ---------------------------------------------------------- MOLECULE T0616TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0616 REMARK MODEL 1 REMARK PARENT N/A ATOM 2 N GLY 54 -22.977 -24.962 -17.277 1.00 0.00 N ATOM 3 CA GLY 54 -22.956 -25.861 -16.130 1.00 0.00 C ATOM 4 O GLY 54 -21.156 -26.967 -14.987 1.00 0.00 O ATOM 5 C GLY 54 -21.560 -25.934 -15.520 1.00 0.00 C ATOM 6 N GLU 55 -20.825 -24.830 -15.602 1.00 0.00 N ATOM 7 CA GLU 55 -19.481 -24.790 -15.057 1.00 0.00 C ATOM 8 CB GLU 55 -18.445 -24.721 -16.182 1.00 0.00 C ATOM 9 CG GLU 55 -18.364 -25.981 -17.028 1.00 0.00 C ATOM 10 CD GLU 55 -17.364 -25.859 -18.160 1.00 0.00 C ATOM 11 OE1 GLU 55 -16.792 -24.761 -18.331 1.00 0.00 O ATOM 12 OE2 GLU 55 -17.151 -26.860 -18.875 1.00 0.00 O ATOM 13 O GLU 55 -19.339 -23.780 -12.893 1.00 0.00 O ATOM 14 C GLU 55 -19.275 -23.621 -14.112 1.00 0.00 C ATOM 15 N LYS 56 -19.026 -22.444 -14.675 1.00 0.00 N ATOM 16 CA LYS 56 -18.810 -21.243 -13.877 1.00 0.00 C ATOM 17 CB LYS 56 -20.040 -20.938 -13.022 1.00 0.00 C ATOM 18 CG LYS 56 -21.307 -20.685 -13.825 1.00 0.00 C ATOM 19 CD LYS 56 -22.470 -20.312 -12.918 1.00 0.00 C ATOM 20 CE LYS 56 -23.741 -20.083 -13.720 1.00 0.00 C ATOM 21 NZ LYS 56 -24.902 -19.775 -12.840 1.00 0.00 N ATOM 22 O LYS 56 -17.602 -21.045 -11.808 1.00 0.00 O ATOM 23 C LYS 56 -17.577 -21.392 -12.990 1.00 0.00 C ATOM 24 N ARG 57 -16.498 -21.911 -13.566 1.00 0.00 N ATOM 25 CA ARG 57 -15.255 -22.107 -12.830 1.00 0.00 C ATOM 26 CB ARG 57 -14.498 -23.321 -13.369 1.00 0.00 C ATOM 27 CG ARG 57 -15.195 -24.649 -13.112 1.00 0.00 C ATOM 28 CD ARG 57 -14.434 -25.803 -13.745 1.00 0.00 C ATOM 29 NE ARG 57 -14.499 -25.768 -15.202 1.00 0.00 N ATOM 30 CZ ARG 57 -13.797 -26.565 -16.002 1.00 0.00 C ATOM 31 NH1 ARG 57 -13.919 -26.462 -17.317 1.00 0.00 H ATOM 32 NH2 ARG 57 -12.968 -27.461 -15.482 1.00 0.00 H ATOM 33 O ARG 57 -13.475 -20.779 -13.744 1.00 0.00 O ATOM 34 C ARG 57 -14.374 -20.863 -12.909 1.00 0.00 C ATOM 35 N ASP 58 -14.640 -19.900 -12.032 1.00 0.00 N ATOM 36 CA ASP 58 -13.872 -18.661 -12.002 1.00 0.00 C ATOM 37 CB ASP 58 -14.463 -17.689 -10.980 1.00 0.00 C ATOM 38 CG ASP 58 -15.783 -17.098 -11.433 1.00 0.00 C ATOM 39 OD1 ASP 58 -16.110 -17.221 -12.633 1.00 0.00 O ATOM 40 OD2 ASP 58 -16.493 -16.511 -10.589 1.00 0.00 O ATOM 41 O ASP 58 -11.511 -18.248 -12.169 1.00 0.00 O ATOM 42 C ASP 58 -12.407 -18.938 -11.680 1.00 0.00 C ATOM 43 N ASP 59 -12.170 -19.953 -10.855 1.00 0.00 N ATOM 44 CA ASP 59 -10.813 -20.323 -10.469 1.00 0.00 C ATOM 45 CB ASP 59 -10.007 -20.756 -11.695 1.00 0.00 C ATOM 46 CG ASP 59 -9.176 -21.998 -11.436 1.00 0.00 C ATOM 47 OD1 ASP 59 -9.755 -23.026 -11.029 1.00 0.00 O ATOM 48 OD2 ASP 59 -7.945 -21.941 -11.640 1.00 0.00 O ATOM 49 O ASP 59 -8.935 -18.903 -9.996 1.00 0.00 O ATOM 50 C ASP 59 -10.115 -19.167 -9.760 1.00 0.00 C ATOM 51 N ILE 60 -10.850 -18.480 -8.891 1.00 0.00 N ATOM 52 CA ILE 60 -10.302 -17.351 -8.148 1.00 0.00 C ATOM 53 CB ILE 60 -10.692 -16.009 -8.792 1.00 0.00 C ATOM 54 CG1 ILE 60 -12.214 -15.865 -8.848 1.00 0.00 C ATOM 55 CG2 ILE 60 -10.058 -15.874 -10.168 1.00 0.00 C ATOM 56 CD1 ILE 60 -12.684 -14.475 -9.214 1.00 0.00 C ATOM 57 O ILE 60 -10.920 -16.342 -6.060 1.00 0.00 O ATOM 58 C ILE 60 -10.759 -17.386 -6.694 1.00 0.00 C ATOM 59 N HIS 61 -10.968 -18.590 -6.171 1.00 0.00 N ATOM 60 CA HIS 61 -11.408 -18.758 -4.792 1.00 0.00 C ATOM 61 CB HIS 61 -12.908 -19.055 -4.740 1.00 0.00 C ATOM 62 CG HIS 61 -13.758 -17.975 -5.333 1.00 0.00 C ATOM 63 CD2 HIS 61 -14.506 -17.805 -6.570 1.00 0.00 C ATOM 64 ND1 HIS 61 -14.003 -16.781 -4.688 1.00 0.00 N ATOM 65 CE1 HIS 61 -14.795 -16.020 -5.464 1.00 0.00 C ATOM 66 NE2 HIS 61 -15.101 -16.628 -6.593 1.00 0.00 N ATOM 67 O HIS 61 -11.211 -20.808 -3.553 1.00 0.00 O ATOM 68 C HIS 61 -10.628 -19.871 -4.098 1.00 0.00 C ATOM 69 N LYS 62 -9.304 -19.764 -4.128 1.00 0.00 N ATOM 70 CA LYS 62 -8.441 -20.759 -3.502 1.00 0.00 C ATOM 71 CB LYS 62 -7.231 -21.054 -4.389 1.00 0.00 C ATOM 72 CG LYS 62 -7.579 -21.697 -5.722 1.00 0.00 C ATOM 73 CD LYS 62 -6.330 -22.001 -6.533 1.00 0.00 C ATOM 74 CE LYS 62 -6.678 -22.652 -7.861 1.00 0.00 C ATOM 75 NZ LYS 62 -5.463 -22.952 -8.667 1.00 0.00 N ATOM 76 O LYS 62 -6.885 -20.636 -1.677 1.00 0.00 O ATOM 77 C LYS 62 -7.981 -20.297 -2.123 1.00 0.00 C ATOM 78 N LYS 63 -8.829 -19.520 -1.453 1.00 0.00 N ATOM 79 CA LYS 63 -8.508 -19.012 -0.125 1.00 0.00 C ATOM 80 CB LYS 63 -7.485 -17.877 -0.217 1.00 0.00 C ATOM 81 CG LYS 63 -6.159 -18.286 -0.834 1.00 0.00 C ATOM 82 CD LYS 63 -5.435 -19.302 0.034 1.00 0.00 C ATOM 83 CE LYS 63 -4.077 -19.659 -0.547 1.00 0.00 C ATOM 84 NZ LYS 63 -3.376 -20.689 0.269 1.00 0.00 N ATOM 85 O LYS 63 -9.713 -17.608 1.406 1.00 0.00 O ATOM 86 C LYS 63 -9.763 -18.531 0.592 1.00 0.00 C ATOM 87 N HIS 64 -10.893 -19.162 0.285 1.00 0.00 N ATOM 88 CA HIS 64 -12.164 -18.798 0.903 1.00 0.00 C ATOM 89 CB HIS 64 -13.332 -19.182 -0.005 1.00 0.00 C ATOM 90 CG HIS 64 -14.641 -18.585 0.407 1.00 0.00 C ATOM 91 CD2 HIS 64 -15.808 -19.048 1.142 1.00 0.00 C ATOM 92 ND1 HIS 64 -14.996 -17.289 0.100 1.00 0.00 N ATOM 93 CE1 HIS 64 -16.219 -17.040 0.601 1.00 0.00 C ATOM 94 NE2 HIS 64 -16.714 -18.092 1.226 1.00 0.00 N ATOM 95 O HIS 64 -13.142 -20.359 2.448 1.00 0.00 O ATOM 96 C HIS 64 -12.314 -19.465 2.268 1.00 0.00 C ATOM 97 N PRO 65 -11.507 -19.025 3.227 1.00 0.00 N ATOM 98 CA PRO 65 -11.548 -19.579 4.576 1.00 0.00 C ATOM 99 CB PRO 65 -10.160 -19.277 5.144 1.00 0.00 C ATOM 100 CG PRO 65 -9.296 -19.090 3.940 1.00 0.00 C ATOM 101 CD PRO 65 -10.165 -18.440 2.901 1.00 0.00 C ATOM 102 O PRO 65 -12.679 -17.700 5.552 1.00 0.00 O ATOM 103 C PRO 65 -12.647 -18.920 5.402 1.00 0.00 C ATOM 104 N CYS 66 -13.551 -19.738 5.935 1.00 0.00 N ATOM 105 CA CYS 66 -14.653 -19.236 6.746 1.00 0.00 C ATOM 106 CB CYS 66 -15.822 -20.223 6.730 1.00 0.00 C ATOM 107 SG CYS 66 -16.550 -20.491 5.097 1.00 0.00 S ATOM 108 O CYS 66 -13.024 -19.144 8.508 1.00 0.00 O ATOM 109 C CYS 66 -14.200 -18.982 8.179 1.00 0.00 C ATOM 113 N TYR 70 -10.838 -20.269 9.569 1.00 0.00 N ATOM 114 CA TYR 70 -9.914 -19.214 9.976 1.00 0.00 C ATOM 115 CB TYR 70 -10.677 -17.923 10.277 1.00 0.00 C ATOM 116 CG TYR 70 -9.789 -16.764 10.670 1.00 0.00 C ATOM 117 CD1 TYR 70 -9.087 -16.048 9.709 1.00 0.00 C ATOM 118 CD2 TYR 70 -9.655 -16.391 12.002 1.00 0.00 C ATOM 119 CE1 TYR 70 -8.274 -14.986 10.059 1.00 0.00 C ATOM 120 CE2 TYR 70 -8.845 -15.332 12.371 1.00 0.00 C ATOM 121 CZ TYR 70 -8.153 -14.631 11.384 1.00 0.00 C ATOM 122 OH TYR 70 -7.341 -13.575 11.735 1.00 0.00 H ATOM 123 O TYR 70 -7.977 -19.161 11.394 1.00 0.00 O ATOM 124 C TYR 70 -9.095 -19.634 11.194 1.00 0.00 C ATOM 125 N ASP 71 -9.659 -20.525 12.002 1.00 0.00 N ATOM 126 CA ASP 71 -8.982 -21.007 13.200 1.00 0.00 C ATOM 127 CB ASP 71 -10.001 -21.449 14.250 1.00 0.00 C ATOM 128 CG ASP 71 -9.535 -21.172 15.667 1.00 0.00 C ATOM 129 OD1 ASP 71 -8.733 -21.970 16.197 1.00 0.00 O ATOM 130 OD2 ASP 71 -9.972 -20.155 16.247 1.00 0.00 O ATOM 131 O ASP 71 -7.110 -22.449 13.631 1.00 0.00 O ATOM 132 C ASP 71 -8.033 -22.160 12.872 1.00 0.00 C ATOM 133 N GLU 72 -8.270 -22.819 11.742 1.00 0.00 N ATOM 134 CA GLU 72 -7.437 -23.941 11.324 1.00 0.00 C ATOM 135 CB GLU 72 -8.298 -25.048 10.710 1.00 0.00 C ATOM 136 CG GLU 72 -9.308 -25.653 11.673 1.00 0.00 C ATOM 137 CD GLU 72 -8.648 -26.363 12.840 1.00 0.00 C ATOM 138 OE1 GLU 72 -7.696 -27.134 12.603 1.00 0.00 O ATOM 139 OE2 GLU 72 -9.084 -26.146 13.990 1.00 0.00 O ATOM 140 O GLU 72 -5.821 -24.319 9.590 1.00 0.00 O ATOM 141 C GLU 72 -6.371 -23.499 10.325 1.00 0.00 C ATOM 142 N LEU 73 -6.076 -22.202 10.304 1.00 0.00 N ATOM 143 CA LEU 73 -5.071 -21.665 9.394 1.00 0.00 C ATOM 144 CB LEU 73 -5.610 -20.428 8.672 1.00 0.00 C ATOM 145 CG LEU 73 -6.787 -20.658 7.721 1.00 0.00 C ATOM 146 CD1 LEU 73 -7.293 -19.336 7.163 1.00 0.00 C ATOM 147 CD2 LEU 73 -6.391 -21.594 6.591 1.00 0.00 C ATOM 148 O LEU 73 -3.687 -21.524 11.351 1.00 0.00 O ATOM 149 C LEU 73 -3.787 -21.321 10.140 1.00 0.00 C ATOM 150 N PRO 74 -2.808 -20.796 9.411 1.00 0.00 N ATOM 151 CA PRO 74 -1.529 -20.421 10.002 1.00 0.00 C ATOM 152 CB PRO 74 -0.492 -21.085 9.092 1.00 0.00 C ATOM 153 CG PRO 74 -1.132 -21.098 7.744 1.00 0.00 C ATOM 154 CD PRO 74 -2.597 -21.336 7.981 1.00 0.00 C ATOM 155 O PRO 74 -2.279 -18.165 9.668 1.00 0.00 O ATOM 156 C PRO 74 -1.364 -18.905 10.029 1.00 0.00 C ATOM 157 N GLU 75 -0.193 -18.450 10.459 1.00 0.00 N ATOM 158 CA GLU 75 0.093 -17.022 10.532 1.00 0.00 C ATOM 159 CB GLU 75 1.367 -16.772 11.342 1.00 0.00 C ATOM 160 CG GLU 75 1.234 -17.087 12.823 1.00 0.00 C ATOM 161 CD GLU 75 2.521 -16.848 13.588 1.00 0.00 C ATOM 162 OE1 GLU 75 3.560 -16.601 12.941 1.00 0.00 O ATOM 163 OE2 GLU 75 2.491 -16.909 14.836 1.00 0.00 O ATOM 164 O GLU 75 -0.084 -15.247 8.924 1.00 0.00 O ATOM 165 C GLU 75 0.230 -16.420 9.138 1.00 0.00 C ATOM 166 N GLU 76 0.699 -17.227 8.193 1.00 0.00 N ATOM 167 CA GLU 76 0.877 -16.773 6.819 1.00 0.00 C ATOM 168 CB GLU 76 1.758 -17.753 6.041 1.00 0.00 C ATOM 169 CG GLU 76 2.043 -17.330 4.610 1.00 0.00 C ATOM 170 CD GLU 76 2.970 -18.291 3.892 1.00 0.00 C ATOM 171 OE1 GLU 76 3.385 -19.291 4.512 1.00 0.00 O ATOM 172 OE2 GLU 76 3.283 -18.041 2.709 1.00 0.00 O ATOM 173 O GLU 76 -0.717 -15.602 5.458 1.00 0.00 O ATOM 174 C GLU 76 -0.469 -16.609 6.119 1.00 0.00 C ATOM 175 N GLU 77 -1.334 -17.607 6.268 1.00 0.00 N ATOM 176 CA GLU 77 -2.655 -17.574 5.648 1.00 0.00 C ATOM 177 CB GLU 77 -3.349 -18.931 5.793 1.00 0.00 C ATOM 178 CG GLU 77 -2.715 -20.042 4.974 1.00 0.00 C ATOM 179 CD GLU 77 -2.782 -19.777 3.482 1.00 0.00 C ATOM 180 OE1 GLU 77 -3.888 -19.491 2.979 1.00 0.00 O ATOM 181 OE2 GLU 77 -1.727 -19.855 2.817 1.00 0.00 O ATOM 182 O GLU 77 -4.192 -15.732 5.554 1.00 0.00 O ATOM 183 C GLU 77 -3.512 -16.473 6.264 1.00 0.00 C ATOM 184 N LYS 78 -3.476 -16.376 7.588 1.00 0.00 N ATOM 185 CA LYS 78 -4.249 -15.369 8.303 1.00 0.00 C ATOM 186 CB LYS 78 -4.050 -15.514 9.814 1.00 0.00 C ATOM 187 CG LYS 78 -5.178 -16.250 10.520 1.00 0.00 C ATOM 188 CD LYS 78 -5.189 -15.942 12.009 1.00 0.00 C ATOM 189 CE LYS 78 -6.280 -16.722 12.725 1.00 0.00 C ATOM 190 NZ LYS 78 -6.712 -16.048 13.979 1.00 0.00 N ATOM 191 O LYS 78 -4.682 -13.044 7.886 1.00 0.00 O ATOM 192 C LYS 78 -3.863 -13.962 7.856 1.00 0.00 C ATOM 193 N GLU 79 -2.609 -13.802 7.440 1.00 0.00 N ATOM 194 CA GLU 79 -2.117 -12.506 6.984 1.00 0.00 C ATOM 195 CB GLU 79 -0.636 -12.345 7.329 1.00 0.00 C ATOM 196 CG GLU 79 -0.351 -12.268 8.821 1.00 0.00 C ATOM 197 CD GLU 79 1.128 -12.140 9.125 1.00 0.00 C ATOM 198 OE1 GLU 79 1.942 -12.268 8.186 1.00 0.00 O ATOM 199 OE2 GLU 79 1.474 -11.913 10.304 1.00 0.00 O ATOM 200 O GLU 79 -2.528 -11.227 4.995 1.00 0.00 O ATOM 201 C GLU 79 -2.330 -12.339 5.483 1.00 0.00 C ATOM 202 N TYR 80 -2.286 -13.451 4.757 1.00 0.00 N ATOM 203 CA TYR 80 -2.475 -13.427 3.312 1.00 0.00 C ATOM 204 CB TYR 80 -2.132 -14.790 2.704 1.00 0.00 C ATOM 205 CG TYR 80 -2.259 -14.838 1.200 1.00 0.00 C ATOM 206 CD1 TYR 80 -1.279 -14.285 0.383 1.00 0.00 C ATOM 207 CD2 TYR 80 -3.359 -15.437 0.596 1.00 0.00 C ATOM 208 CE1 TYR 80 -1.388 -14.325 -0.994 1.00 0.00 C ATOM 209 CE2 TYR 80 -3.483 -15.486 -0.779 1.00 0.00 C ATOM 210 CZ TYR 80 -2.484 -14.924 -1.574 1.00 0.00 C ATOM 211 OH TYR 80 -2.596 -14.963 -2.945 1.00 0.00 H ATOM 212 O TYR 80 -4.138 -12.304 1.995 1.00 0.00 O ATOM 213 C TYR 80 -3.904 -13.037 2.955 1.00 0.00 C ATOM 214 N ASP 81 -4.856 -13.529 3.739 1.00 0.00 N ATOM 215 CA ASP 81 -6.264 -13.230 3.509 1.00 0.00 C ATOM 216 CB ASP 81 -7.150 -14.174 4.325 1.00 0.00 C ATOM 217 CG ASP 81 -7.139 -15.592 3.789 1.00 0.00 C ATOM 218 OD1 ASP 81 -6.676 -15.791 2.647 1.00 0.00 O ATOM 219 OD2 ASP 81 -7.592 -16.503 4.513 1.00 0.00 O ATOM 220 O ASP 81 -7.505 -11.180 3.325 1.00 0.00 O ATOM 221 C ASP 81 -6.572 -11.778 3.862 1.00 0.00 C ATOM 222 N ARG 82 -5.780 -11.215 4.769 1.00 0.00 N ATOM 223 CA ARG 82 -5.964 -9.832 5.195 1.00 0.00 C ATOM 224 CB ARG 82 -5.497 -9.649 6.641 1.00 0.00 C ATOM 225 CG ARG 82 -6.368 -10.355 7.667 1.00 0.00 C ATOM 226 CD ARG 82 -5.866 -10.105 9.080 1.00 0.00 C ATOM 227 NE ARG 82 -6.651 -10.833 10.076 1.00 0.00 N ATOM 228 CZ ARG 82 -7.778 -10.379 10.615 1.00 0.00 C ATOM 229 NH1 ARG 82 -8.424 -11.109 11.513 1.00 0.00 H ATOM 230 NH2 ARG 82 -8.256 -9.196 10.254 1.00 0.00 H ATOM 231 O ARG 82 -5.614 -7.726 4.097 1.00 0.00 O ATOM 232 C ARG 82 -5.213 -8.877 4.273 1.00 0.00 C ATOM 233 N ASN 83 -4.124 -9.362 3.685 1.00 0.00 N ATOM 234 CA ASN 83 -3.318 -8.553 2.778 1.00 0.00 C ATOM 235 CB ASN 83 -2.104 -9.345 2.290 1.00 0.00 C ATOM 236 CG ASN 83 -1.042 -9.504 3.361 1.00 0.00 C ATOM 237 ND2 ASN 83 -0.166 -10.486 3.183 1.00 0.00 N ATOM 238 OD1 ASN 83 -1.014 -8.754 4.337 1.00 0.00 O ATOM 239 O ASN 83 -3.918 -6.971 1.076 1.00 0.00 O ATOM 240 C ASN 83 -4.149 -8.060 1.600 1.00 0.00 C ATOM 241 N THR 84 -5.118 -8.870 1.187 1.00 0.00 N ATOM 242 CA THR 84 -5.985 -8.518 0.069 1.00 0.00 C ATOM 243 CB THR 84 -6.516 -9.773 -0.650 1.00 0.00 C ATOM 244 CG2 THR 84 -5.362 -10.614 -1.174 1.00 0.00 C ATOM 245 OG1 THR 84 -7.279 -10.565 0.267 1.00 0.00 O ATOM 246 O THR 84 -7.660 -6.821 -0.212 1.00 0.00 O ATOM 247 C THR 84 -7.160 -7.665 0.533 1.00 0.00 C ATOM 248 N ALA 85 -7.600 -7.893 1.767 1.00 0.00 N ATOM 249 CA ALA 85 -8.718 -7.144 2.328 1.00 0.00 C ATOM 250 CB ALA 85 -9.213 -7.808 3.603 1.00 0.00 C ATOM 251 O ALA 85 -8.958 -4.765 2.120 1.00 0.00 O ATOM 252 C ALA 85 -8.321 -5.699 2.607 1.00 0.00 C ATOM 253 N MET 86 -7.263 -5.521 3.391 1.00 0.00 N ATOM 254 CA MET 86 -6.781 -4.187 3.733 1.00 0.00 C ATOM 255 CB MET 86 -5.584 -4.277 4.681 1.00 0.00 C ATOM 256 CG MET 86 -5.931 -4.777 6.074 1.00 0.00 C ATOM 257 SD MET 86 -7.144 -3.734 6.905 1.00 0.00 S ATOM 258 CE MET 86 -6.206 -2.220 7.108 1.00 0.00 C ATOM 259 O MET 86 -6.508 -2.180 2.446 1.00 0.00 O ATOM 260 C MET 86 -6.401 -3.407 2.480 1.00 0.00 C ATOM 261 N ASN 87 -5.957 -4.122 1.452 1.00 0.00 N ATOM 262 CA ASN 87 -5.562 -3.495 0.196 1.00 0.00 C ATOM 263 CB ASN 87 -4.736 -4.465 -0.650 1.00 0.00 C ATOM 264 CG ASN 87 -4.094 -3.793 -1.848 1.00 0.00 C ATOM 265 ND2 ASN 87 -3.934 -4.543 -2.931 1.00 0.00 N ATOM 266 OD1 ASN 87 -3.748 -2.611 -1.798 1.00 0.00 O ATOM 267 O ASN 87 -6.771 -1.925 -1.161 1.00 0.00 O ATOM 268 C ASN 87 -6.784 -3.008 -0.577 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 264 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 59.41 58.6 58 30.2 192 ARMSMC SECONDARY STRUCTURE . . 13.33 100.0 25 33.8 74 ARMSMC SURFACE . . . . . . . . 62.39 58.7 46 29.9 154 ARMSMC BURIED . . . . . . . . 46.20 58.3 12 31.6 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.87 48.3 29 32.6 89 ARMSSC1 RELIABLE SIDE CHAINS . 59.87 48.3 29 34.5 84 ARMSSC1 SECONDARY STRUCTURE . . 66.93 50.0 12 36.4 33 ARMSSC1 SURFACE . . . . . . . . 65.02 45.8 24 32.4 74 ARMSSC1 BURIED . . . . . . . . 22.36 60.0 5 33.3 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.13 59.3 27 35.1 77 ARMSSC2 RELIABLE SIDE CHAINS . 51.99 68.2 22 35.5 62 ARMSSC2 SECONDARY STRUCTURE . . 41.89 81.8 11 40.7 27 ARMSSC2 SURFACE . . . . . . . . 57.95 59.1 22 33.8 65 ARMSSC2 BURIED . . . . . . . . 101.42 60.0 5 41.7 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.08 53.8 13 39.4 33 ARMSSC3 RELIABLE SIDE CHAINS . 73.08 53.8 13 40.6 32 ARMSSC3 SECONDARY STRUCTURE . . 79.56 57.1 7 41.2 17 ARMSSC3 SURFACE . . . . . . . . 60.99 54.5 11 35.5 31 ARMSSC3 BURIED . . . . . . . . 119.41 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.90 50.0 6 40.0 15 ARMSSC4 RELIABLE SIDE CHAINS . 71.90 50.0 6 40.0 15 ARMSSC4 SECONDARY STRUCTURE . . 33.43 50.0 2 25.0 8 ARMSSC4 SURFACE . . . . . . . . 75.90 60.0 5 35.7 14 ARMSSC4 BURIED . . . . . . . . 47.04 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.06 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.06 31 32.0 97 CRMSCA CRN = ALL/NP . . . . . 0.2278 CRMSCA SECONDARY STRUCTURE . . 4.30 13 35.1 37 CRMSCA SURFACE . . . . . . . . 7.02 24 30.8 78 CRMSCA BURIED . . . . . . . . 7.19 7 36.8 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.05 154 32.0 482 CRMSMC SECONDARY STRUCTURE . . 4.44 65 35.1 185 CRMSMC SURFACE . . . . . . . . 7.09 120 30.9 388 CRMSMC BURIED . . . . . . . . 6.90 34 36.2 94 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.56 140 33.7 416 CRMSSC RELIABLE SIDE CHAINS . 8.58 126 34.2 368 CRMSSC SECONDARY STRUCTURE . . 4.81 60 37.0 162 CRMSSC SURFACE . . . . . . . . 9.32 112 32.7 342 CRMSSC BURIED . . . . . . . . 4.39 28 37.8 74 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.88 264 32.8 804 CRMSALL SECONDARY STRUCTURE . . 4.66 112 36.1 310 CRMSALL SURFACE . . . . . . . . 8.31 208 31.8 654 CRMSALL BURIED . . . . . . . . 6.05 56 37.3 150 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.028 1.000 0.500 31 32.0 97 ERRCA SECONDARY STRUCTURE . . 3.874 1.000 0.500 13 35.1 37 ERRCA SURFACE . . . . . . . . 6.062 1.000 0.500 24 30.8 78 ERRCA BURIED . . . . . . . . 5.911 1.000 0.500 7 36.8 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.028 1.000 0.500 154 32.0 482 ERRMC SECONDARY STRUCTURE . . 3.975 1.000 0.500 65 35.1 185 ERRMC SURFACE . . . . . . . . 6.137 1.000 0.500 120 30.9 388 ERRMC BURIED . . . . . . . . 5.647 1.000 0.500 34 36.2 94 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.184 1.000 0.500 140 33.7 416 ERRSC RELIABLE SIDE CHAINS . 7.126 1.000 0.500 126 34.2 368 ERRSC SECONDARY STRUCTURE . . 4.552 1.000 0.500 60 37.0 162 ERRSC SURFACE . . . . . . . . 7.999 1.000 0.500 112 32.7 342 ERRSC BURIED . . . . . . . . 3.924 1.000 0.500 28 37.8 74 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.634 1.000 0.500 264 32.8 804 ERRALL SECONDARY STRUCTURE . . 4.284 1.000 0.500 112 36.1 310 ERRALL SURFACE . . . . . . . . 7.081 1.000 0.500 208 31.8 654 ERRALL BURIED . . . . . . . . 4.975 1.000 0.500 56 37.3 150 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 8 14 25 31 97 DISTCA CA (P) 0.00 2.06 8.25 14.43 25.77 97 DISTCA CA (RMS) 0.00 1.17 2.29 3.15 4.98 DISTCA ALL (N) 3 21 48 118 209 264 804 DISTALL ALL (P) 0.37 2.61 5.97 14.68 26.00 804 DISTALL ALL (RMS) 0.77 1.56 2.21 3.40 5.21 DISTALL END of the results output