####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 84), selected 21 , name T0616AL285_1-D1 # Molecule2: number of CA atoms 97 ( 804), selected 21 , name T0616-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0616AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 70 - 90 0.58 0.58 LCS_AVERAGE: 21.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 70 - 90 0.58 0.58 LCS_AVERAGE: 21.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 70 - 90 0.58 0.58 LCS_AVERAGE: 21.65 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Y 70 Y 70 21 21 21 5 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT D 71 D 71 21 21 21 5 17 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT E 72 E 72 21 21 21 5 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT L 73 L 73 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT P 74 P 74 21 21 21 11 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT E 75 E 75 21 21 21 11 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT E 76 E 76 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT E 77 E 77 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT K 78 K 78 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT E 79 E 79 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT Y 80 Y 80 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT D 81 D 81 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT R 82 R 82 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT N 83 N 83 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT T 84 T 84 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 85 A 85 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT M 86 M 86 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT N 87 N 87 21 21 21 6 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT T 88 T 88 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT I 89 I 89 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_GDT K 90 K 90 21 21 21 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 LCS_AVERAGE LCS_A: 21.65 ( 21.65 21.65 21.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 20 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 21 GDT PERCENT_AT 14.43 20.62 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 21.65 GDT RMS_LOCAL 0.34 0.53 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 GDT RMS_ALL_AT 0.64 0.59 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 0.58 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Y 70 Y 70 0.985 8 0.022 0.022 0.985 90.476 30.159 LGA D 71 D 71 1.203 4 0.020 0.020 1.258 81.429 40.714 LGA E 72 E 72 0.906 5 0.150 0.150 0.906 95.238 42.328 LGA L 73 L 73 0.258 4 0.059 0.059 0.674 97.619 48.810 LGA P 74 P 74 0.838 3 0.065 0.065 0.838 90.476 51.701 LGA E 75 E 75 0.644 5 0.069 0.069 0.644 95.238 42.328 LGA E 76 E 76 0.368 5 0.085 0.085 0.455 100.000 44.444 LGA E 77 E 77 0.481 5 0.059 0.059 0.481 100.000 44.444 LGA K 78 K 78 0.419 5 0.022 0.022 0.419 100.000 44.444 LGA E 79 E 79 0.419 5 0.041 0.041 0.428 100.000 44.444 LGA Y 80 Y 80 0.361 8 0.024 0.024 0.472 100.000 33.333 LGA D 81 D 81 0.388 4 0.043 0.043 0.415 100.000 50.000 LGA R 82 R 82 0.309 7 0.049 0.049 0.614 97.619 35.498 LGA N 83 N 83 0.518 4 0.099 0.099 0.518 97.619 48.810 LGA T 84 T 84 0.552 3 0.022 0.022 0.552 92.857 53.061 LGA A 85 A 85 0.460 1 0.043 0.043 0.537 97.619 78.095 LGA M 86 M 86 0.187 4 0.054 0.054 0.304 100.000 50.000 LGA N 87 N 87 0.642 4 0.051 0.051 0.642 97.619 48.810 LGA T 88 T 88 0.465 3 0.025 0.025 0.502 97.619 55.782 LGA I 89 I 89 0.286 4 0.033 0.033 0.529 97.619 48.810 LGA K 90 K 90 0.372 5 0.058 0.058 0.476 100.000 44.444 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 180 84 46.67 97 SUMMARY(RMSD_GDC): 0.585 0.533 0.533 20.918 10.108 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 97 4.0 21 0.58 21.392 21.568 3.066 LGA_LOCAL RMSD: 0.585 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 0.585 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 0.585 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.899177 * X + 0.406014 * Y + 0.163195 * Z + -10.400363 Y_new = 0.171875 * X + 0.015272 * Y + -0.985000 * Z + -13.591288 Z_new = -0.402416 * X + 0.913739 * Y + -0.056052 * Z + 5.021156 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.188869 0.414155 1.632063 [DEG: 10.8214 23.7293 93.5103 ] ZXZ: 0.164188 1.626878 -0.414847 [DEG: 9.4073 93.2132 -23.7690 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0616AL285_1-D1 REMARK 2: T0616-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0616AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 97 4.0 21 0.58 21.568 0.58 REMARK ---------------------------------------------------------- MOLECULE T0616AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2ctoA ATOM 1 N TYR 70 -11.386 -21.248 10.495 1.00 0.00 N ATOM 2 CA TYR 70 -10.477 -20.110 10.417 1.00 0.00 C ATOM 3 C TYR 70 -9.304 -20.285 11.376 1.00 0.00 C ATOM 4 O TYR 70 -8.171 -19.924 11.057 1.00 0.00 O ATOM 5 N ASP 71 -9.583 -20.839 12.552 1.00 0.00 N ATOM 6 CA ASP 71 -8.549 -21.063 13.555 1.00 0.00 C ATOM 7 C ASP 71 -7.518 -22.072 13.065 1.00 0.00 C ATOM 8 O ASP 71 -6.383 -22.100 13.546 1.00 0.00 O ATOM 9 N GLU 72 -7.916 -22.901 12.105 1.00 0.00 N ATOM 10 CA GLU 72 -7.025 -23.912 11.550 1.00 0.00 C ATOM 11 C GLU 72 -5.967 -23.275 10.656 1.00 0.00 C ATOM 12 O GLU 72 -4.839 -23.763 10.563 1.00 0.00 O ATOM 13 N LEU 73 -6.336 -22.181 9.999 1.00 0.00 N ATOM 14 CA LEU 73 -5.418 -21.474 9.112 1.00 0.00 C ATOM 15 C LEU 73 -4.127 -21.115 9.839 1.00 0.00 C ATOM 16 O LEU 73 -4.096 -21.032 11.069 1.00 0.00 O ATOM 17 N PRO 74 -3.061 -20.902 9.074 1.00 0.00 N ATOM 18 CA PRO 74 -1.767 -20.551 9.646 1.00 0.00 C ATOM 19 C PRO 74 -1.516 -19.050 9.541 1.00 0.00 C ATOM 20 O PRO 74 -2.080 -18.375 8.681 1.00 0.00 O ATOM 21 N GLU 75 -0.664 -18.533 10.424 1.00 0.00 N ATOM 22 CA GLU 75 -0.340 -17.113 10.430 1.00 0.00 C ATOM 23 C GLU 75 -0.172 -16.586 9.007 1.00 0.00 C ATOM 24 O GLU 75 -0.713 -15.538 8.655 1.00 0.00 O ATOM 25 N GLU 76 0.582 -17.322 8.196 1.00 0.00 N ATOM 26 CA GLU 76 0.821 -16.928 6.812 1.00 0.00 C ATOM 27 C GLU 76 -0.494 -16.695 6.077 1.00 0.00 C ATOM 28 O GLU 76 -0.667 -15.684 5.397 1.00 0.00 O ATOM 29 N GLU 77 -1.420 -17.641 6.217 1.00 0.00 N ATOM 30 CA GLU 77 -2.719 -17.539 5.564 1.00 0.00 C ATOM 31 C GLU 77 -3.485 -16.319 6.064 1.00 0.00 C ATOM 32 O GLU 77 -3.926 -15.481 5.276 1.00 0.00 O ATOM 33 N LYS 78 -3.642 -16.223 7.380 1.00 0.00 N ATOM 34 CA LYS 78 -4.354 -15.107 7.988 1.00 0.00 C ATOM 35 C LYS 78 -3.837 -13.775 7.452 1.00 0.00 C ATOM 36 O LYS 78 -4.619 -12.893 7.096 1.00 0.00 O ATOM 37 N GLU 79 -2.515 -13.638 7.394 1.00 0.00 N ATOM 38 CA GLU 79 -1.896 -12.414 6.899 1.00 0.00 C ATOM 39 C GLU 79 -2.236 -12.187 5.429 1.00 0.00 C ATOM 40 O GLU 79 -2.455 -11.054 4.999 1.00 0.00 O ATOM 41 N TYR 80 -2.280 -13.272 4.665 1.00 0.00 N ATOM 42 CA TYR 80 -2.593 -13.195 3.243 1.00 0.00 C ATOM 43 C TYR 80 -3.983 -12.603 3.024 1.00 0.00 C ATOM 44 O TYR 80 -4.154 -11.668 2.242 1.00 0.00 O ATOM 45 N ASP 81 -4.972 -13.153 3.721 1.00 0.00 N ATOM 46 CA ASP 81 -6.345 -12.680 3.601 1.00 0.00 C ATOM 47 C ASP 81 -6.476 -11.250 4.117 1.00 0.00 C ATOM 48 O ASP 81 -7.230 -10.447 3.568 1.00 0.00 O ATOM 49 N ARG 82 -5.735 -10.940 5.176 1.00 0.00 N ATOM 50 CA ARG 82 -5.764 -9.607 5.765 1.00 0.00 C ATOM 51 C ARG 82 -5.100 -8.586 4.848 1.00 0.00 C ATOM 52 O ARG 82 -5.513 -7.428 4.790 1.00 0.00 O ATOM 53 N ASN 83 -4.067 -9.024 4.132 1.00 0.00 N ATOM 54 CA ASN 83 -3.346 -8.146 3.219 1.00 0.00 C ATOM 55 C ASN 83 -4.186 -7.836 1.984 1.00 0.00 C ATOM 56 O ASN 83 -4.390 -6.674 1.636 1.00 0.00 O ATOM 57 N THR 84 -4.671 -8.885 1.326 1.00 0.00 N ATOM 58 CA THR 84 -5.489 -8.724 0.131 1.00 0.00 C ATOM 59 C THR 84 -6.762 -7.942 0.445 1.00 0.00 C ATOM 60 O THR 84 -7.246 -7.169 -0.383 1.00 0.00 O ATOM 61 N ALA 85 -7.298 -8.150 1.642 1.00 0.00 N ATOM 62 CA ALA 85 -8.513 -7.463 2.064 1.00 0.00 C ATOM 63 C ALA 85 -8.253 -5.978 2.293 1.00 0.00 C ATOM 64 O ALA 85 -8.991 -5.127 1.798 1.00 0.00 O ATOM 65 N MET 86 -7.202 -5.676 3.049 1.00 0.00 N ATOM 66 CA MET 86 -6.847 -4.293 3.344 1.00 0.00 C ATOM 67 C MET 86 -6.591 -3.511 2.059 1.00 0.00 C ATOM 68 O MET 86 -7.145 -2.430 1.858 1.00 0.00 O ATOM 69 N ASN 87 -5.746 -4.063 1.195 1.00 0.00 N ATOM 70 CA ASN 87 -5.415 -3.417 -0.071 1.00 0.00 C ATOM 71 C ASN 87 -6.655 -3.267 -0.946 1.00 0.00 C ATOM 72 O ASN 87 -6.794 -2.290 -1.682 1.00 0.00 O ATOM 73 N THR 88 -7.553 -4.242 -0.860 1.00 0.00 N ATOM 74 CA THR 88 -8.783 -4.219 -1.645 1.00 0.00 C ATOM 75 C THR 88 -9.657 -3.033 -1.254 1.00 0.00 C ATOM 76 O THR 88 -10.146 -2.301 -2.115 1.00 0.00 O ATOM 77 N ILE 89 -9.846 -2.846 0.047 1.00 0.00 N ATOM 78 CA ILE 89 -10.662 -1.748 0.550 1.00 0.00 C ATOM 79 C ILE 89 -10.005 -0.403 0.254 1.00 0.00 C ATOM 80 O ILE 89 -10.678 0.559 -0.120 1.00 0.00 O ATOM 81 N LYS 90 -8.689 -0.341 0.422 1.00 0.00 N ATOM 82 CA LYS 90 -7.942 0.884 0.172 1.00 0.00 C ATOM 83 C LYS 90 -8.062 1.311 -1.288 1.00 0.00 C ATOM 84 O LYS 90 -8.343 2.472 -1.583 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 84 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 12.32 97.5 40 20.8 192 ARMSMC SECONDARY STRUCTURE . . 8.49 100.0 31 41.9 74 ARMSMC SURFACE . . . . . . . . 13.50 96.6 29 18.8 154 ARMSMC BURIED . . . . . . . . 8.43 100.0 11 28.9 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 89 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 84 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 74 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 77 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 62 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 27 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 65 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 0.58 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 0.58 21 21.6 97 CRMSCA CRN = ALL/NP . . . . . 0.0278 CRMSCA SECONDARY STRUCTURE . . 0.45 16 43.2 37 CRMSCA SURFACE . . . . . . . . 0.61 15 19.2 78 CRMSCA BURIED . . . . . . . . 0.51 6 31.6 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 0.53 84 17.4 482 CRMSMC SECONDARY STRUCTURE . . 0.40 64 34.6 185 CRMSMC SURFACE . . . . . . . . 0.54 60 15.5 388 CRMSMC BURIED . . . . . . . . 0.51 24 25.5 94 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 416 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 368 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 162 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 342 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 74 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 0.53 84 10.4 804 CRMSALL SECONDARY STRUCTURE . . 0.40 64 20.6 310 CRMSALL SURFACE . . . . . . . . 0.54 60 9.2 654 CRMSALL BURIED . . . . . . . . 0.51 24 16.0 150 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.527 1.000 0.500 21 21.6 97 ERRCA SECONDARY STRUCTURE . . 0.429 1.000 0.500 16 43.2 37 ERRCA SURFACE . . . . . . . . 0.564 1.000 0.500 15 19.2 78 ERRCA BURIED . . . . . . . . 0.433 1.000 0.500 6 31.6 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.478 1.000 0.500 84 17.4 482 ERRMC SECONDARY STRUCTURE . . 0.388 1.000 0.500 64 34.6 185 ERRMC SURFACE . . . . . . . . 0.491 1.000 0.500 60 15.5 388 ERRMC BURIED . . . . . . . . 0.447 1.000 0.500 24 25.5 94 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 416 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 368 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 162 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 342 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 74 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.478 1.000 0.500 84 10.4 804 ERRALL SECONDARY STRUCTURE . . 0.388 1.000 0.500 64 20.6 310 ERRALL SURFACE . . . . . . . . 0.491 1.000 0.500 60 9.2 654 ERRALL BURIED . . . . . . . . 0.447 1.000 0.500 24 16.0 150 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 20 21 21 21 21 21 97 DISTCA CA (P) 20.62 21.65 21.65 21.65 21.65 97 DISTCA CA (RMS) 0.54 0.58 0.58 0.58 0.58 DISTCA ALL (N) 80 84 84 84 84 84 804 DISTALL ALL (P) 9.95 10.45 10.45 10.45 10.45 804 DISTALL ALL (RMS) 0.48 0.53 0.53 0.53 0.53 DISTALL END of the results output