####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 26 ( 104), selected 26 , name T0614AL396_1-D1 # Molecule2: number of CA atoms 71 ( 566), selected 26 , name T0614-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0614AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 86 - 111 3.38 3.38 LCS_AVERAGE: 36.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 93 - 111 1.63 8.37 LCS_AVERAGE: 23.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 94 - 111 0.51 9.30 LCS_AVERAGE: 21.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 26 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 86 K 86 8 11 26 4 8 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT H 87 H 87 8 11 26 4 8 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT L 88 L 88 8 11 26 4 8 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT Y 89 Y 89 8 11 26 4 8 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT F 90 F 90 8 11 26 4 8 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT E 91 E 91 8 11 26 4 8 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT S 92 S 92 8 11 26 3 6 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT D 93 D 93 8 19 26 3 7 11 11 14 16 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT A 94 A 94 18 19 26 10 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT A 95 A 95 18 19 26 9 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT T 96 T 96 18 19 26 11 18 18 18 18 18 18 19 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT V 97 V 97 18 19 26 11 18 18 18 18 18 18 19 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT N 98 N 98 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT E 99 E 99 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT I 100 I 100 18 19 26 9 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT V 101 V 101 18 19 26 9 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT L 102 L 102 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT K 103 K 103 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT V 104 V 104 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT N 105 N 105 18 19 26 8 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT Y 106 Y 106 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT I 107 I 107 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT L 108 L 108 18 19 26 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT E 109 E 109 18 19 26 11 18 18 18 18 18 18 19 20 22 26 26 26 26 26 26 26 26 26 26 LCS_GDT S 110 S 110 18 19 26 6 18 18 18 18 18 18 19 24 25 26 26 26 26 26 26 26 26 26 26 LCS_GDT R 111 R 111 18 19 26 6 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 LCS_AVERAGE LCS_A: 27.12 ( 21.02 23.73 36.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 18 18 18 18 18 18 21 24 25 26 26 26 26 26 26 26 26 26 26 GDT PERCENT_AT 15.49 25.35 25.35 25.35 25.35 25.35 25.35 29.58 33.80 35.21 36.62 36.62 36.62 36.62 36.62 36.62 36.62 36.62 36.62 36.62 GDT RMS_LOCAL 0.33 0.51 0.51 0.51 0.51 0.51 0.51 2.69 3.03 3.19 3.38 3.38 3.38 3.38 3.38 3.38 3.38 3.38 3.38 3.38 GDT RMS_ALL_AT 9.34 9.30 9.30 9.30 9.30 9.30 9.30 3.56 3.47 3.41 3.38 3.38 3.38 3.38 3.38 3.38 3.38 3.38 3.38 3.38 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 86 K 86 1.449 5 0.227 0.227 2.294 75.119 33.386 LGA H 87 H 87 2.267 6 0.073 0.073 2.284 64.762 25.905 LGA L 88 L 88 1.611 4 0.128 0.128 1.699 72.857 36.429 LGA Y 89 Y 89 1.549 8 0.036 0.036 1.632 72.857 24.286 LGA F 90 F 90 2.022 7 0.171 0.171 2.022 70.833 25.758 LGA E 91 E 91 1.595 5 0.101 0.101 1.813 72.857 32.381 LGA S 92 S 92 2.616 2 0.250 0.250 2.616 62.857 41.905 LGA D 93 D 93 1.212 4 0.101 0.101 2.414 72.976 36.488 LGA A 94 A 94 3.165 1 0.625 0.625 3.165 65.119 52.095 LGA A 95 A 95 1.829 1 0.036 0.036 2.384 73.214 58.571 LGA T 96 T 96 4.942 3 0.041 0.041 4.942 37.262 21.293 LGA V 97 V 97 4.648 3 0.015 0.015 4.648 40.476 23.129 LGA N 98 N 98 2.195 4 0.017 0.017 2.200 70.952 35.476 LGA E 99 E 99 2.490 5 0.025 0.025 2.490 68.929 30.635 LGA I 100 I 100 3.750 4 0.028 0.028 3.750 53.690 26.845 LGA V 101 V 101 3.736 3 0.061 0.061 3.736 50.119 28.639 LGA L 102 L 102 3.353 4 0.026 0.026 3.747 53.810 26.905 LGA K 103 K 103 3.230 5 0.071 0.071 3.230 61.071 27.143 LGA V 104 V 104 1.660 3 0.027 0.027 1.938 75.000 42.857 LGA N 105 N 105 4.321 4 0.047 0.047 5.445 37.976 18.988 LGA Y 106 Y 106 5.173 8 0.025 0.025 5.173 31.667 10.556 LGA I 107 I 107 2.106 4 0.053 0.053 2.836 66.905 33.452 LGA L 108 L 108 3.889 4 0.009 0.009 5.398 40.119 20.060 LGA E 109 E 109 7.614 5 0.054 0.054 8.424 10.833 4.815 LGA S 110 S 110 6.783 2 0.068 0.068 6.783 17.262 11.508 LGA R 111 R 111 3.194 7 0.126 0.126 4.297 43.452 15.801 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 26 104 104 100.00 215 104 48.37 71 SUMMARY(RMSD_GDC): 3.385 3.101 3.101 20.605 10.497 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 26 71 4.0 21 2.69 29.225 28.232 0.752 LGA_LOCAL RMSD: 2.694 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.558 Number of assigned atoms: 26 Std_ASGN_ATOMS RMSD: 3.385 Standard rmsd on all 26 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.648128 * X + -0.064558 * Y + -0.758790 * Z + 18.140177 Y_new = -0.714459 * X + 0.396430 * Y + 0.576534 * Z + 54.969292 Z_new = 0.263587 * X + 0.915792 * Y + -0.303062 * Z + 35.819019 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.307553 -0.266739 1.890381 [DEG: -132.2131 -15.2830 108.3109 ] ZXZ: -2.220545 1.878700 0.280249 [DEG: -127.2279 107.6416 16.0571 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0614AL396_1-D1 REMARK 2: T0614-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0614AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 26 71 4.0 21 2.69 28.232 3.38 REMARK ---------------------------------------------------------- MOLECULE T0614AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kby_A ATOM 9 N LYS 86 32.063 48.965 24.455 1.00 0.00 N ATOM 10 CA LYS 86 31.683 50.140 23.681 1.00 0.00 C ATOM 11 C LYS 86 30.171 50.338 23.734 1.00 0.00 C ATOM 12 O LYS 86 29.551 50.090 24.767 1.00 0.00 O ATOM 13 N HIS 87 29.573 50.786 22.631 1.00 0.00 N ATOM 14 CA HIS 87 28.135 50.994 22.604 1.00 0.00 C ATOM 15 C HIS 87 27.402 49.663 22.582 1.00 0.00 C ATOM 16 O HIS 87 27.835 48.697 21.954 1.00 0.00 O ATOM 17 N LEU 88 26.287 49.643 23.282 1.00 0.00 N ATOM 18 CA LEU 88 25.468 48.461 23.422 1.00 0.00 C ATOM 19 C LEU 88 24.041 48.754 23.014 1.00 0.00 C ATOM 20 O LEU 88 23.678 49.912 22.871 1.00 0.00 O ATOM 21 N TYR 89 23.228 47.731 22.814 1.00 0.00 N ATOM 22 CA TYR 89 21.829 47.970 22.490 1.00 0.00 C ATOM 23 C TYR 89 20.952 47.463 23.627 1.00 0.00 C ATOM 24 O TYR 89 21.078 46.321 24.068 1.00 0.00 O ATOM 25 N PHE 90 20.071 48.337 24.099 1.00 0.00 N ATOM 26 CA PHE 90 19.188 48.030 25.216 1.00 0.00 C ATOM 27 C PHE 90 17.738 47.995 24.767 1.00 0.00 C ATOM 28 O PHE 90 17.150 49.036 24.483 1.00 0.00 O ATOM 29 N GLU 91 17.136 46.816 24.736 1.00 0.00 N ATOM 30 CA GLU 91 15.748 46.733 24.338 1.00 0.00 C ATOM 31 C GLU 91 14.843 47.061 25.509 1.00 0.00 C ATOM 32 O GLU 91 14.792 46.332 26.497 1.00 0.00 O ATOM 33 N SER 92 14.125 48.168 25.384 1.00 0.00 N ATOM 34 CA SER 92 13.251 48.612 26.451 1.00 0.00 C ATOM 35 C SER 92 11.805 48.712 25.980 1.00 0.00 C ATOM 36 O SER 92 11.504 49.422 25.030 1.00 0.00 O ATOM 37 N ASP 93 10.903 48.056 26.698 1.00 0.00 N ATOM 38 CA ASP 93 9.499 48.040 26.305 1.00 0.00 C ATOM 39 C ASP 93 8.698 49.092 27.065 1.00 0.00 C ATOM 40 O ASP 93 8.867 49.271 28.272 1.00 0.00 O ATOM 41 N ALA 94 7.829 49.781 26.342 1.00 0.00 N ATOM 42 CA ALA 94 7.016 50.818 26.954 1.00 0.00 C ATOM 43 C ALA 94 7.656 52.187 26.832 1.00 0.00 C ATOM 44 O ALA 94 8.801 52.379 27.238 1.00 0.00 O ATOM 45 N ALA 95 6.916 53.136 26.269 1.00 0.00 N ATOM 46 CA ALA 95 7.416 54.497 26.081 1.00 0.00 C ATOM 47 C ALA 95 7.942 55.114 27.380 1.00 0.00 C ATOM 48 O ALA 95 9.053 55.640 27.402 1.00 0.00 O ATOM 49 N THR 96 7.157 55.061 28.454 1.00 0.00 N ATOM 50 CA THR 96 7.588 55.636 29.732 1.00 0.00 C ATOM 51 C THR 96 8.941 55.069 30.154 1.00 0.00 C ATOM 52 O THR 96 9.828 55.797 30.598 1.00 0.00 O ATOM 53 N VAL 97 9.076 53.761 30.005 1.00 0.00 N ATOM 54 CA VAL 97 10.290 53.042 30.363 1.00 0.00 C ATOM 55 C VAL 97 11.467 53.485 29.484 1.00 0.00 C ATOM 56 O VAL 97 12.555 53.778 29.980 1.00 0.00 O ATOM 57 N ASN 98 11.225 53.527 28.179 1.00 0.00 N ATOM 58 CA ASN 98 12.230 53.924 27.196 1.00 0.00 C ATOM 59 C ASN 98 12.740 55.342 27.446 1.00 0.00 C ATOM 60 O ASN 98 13.937 55.589 27.390 1.00 0.00 O ATOM 61 N GLU 99 11.821 56.264 27.700 1.00 0.00 N ATOM 62 CA GLU 99 12.165 57.665 27.959 1.00 0.00 C ATOM 63 C GLU 99 13.027 57.828 29.205 1.00 0.00 C ATOM 64 O GLU 99 14.006 58.575 29.179 1.00 0.00 O ATOM 65 N ILE 100 12.683 57.150 30.292 1.00 0.00 N ATOM 66 CA ILE 100 13.472 57.274 31.507 1.00 0.00 C ATOM 67 C ILE 100 14.899 56.800 31.275 1.00 0.00 C ATOM 68 O ILE 100 15.857 57.463 31.682 1.00 0.00 O ATOM 69 N VAL 101 15.044 55.663 30.613 1.00 0.00 N ATOM 70 CA VAL 101 16.359 55.113 30.337 1.00 0.00 C ATOM 71 C VAL 101 17.074 55.915 29.254 1.00 0.00 C ATOM 72 O VAL 101 18.281 56.080 29.314 1.00 0.00 O ATOM 73 N LEU 102 16.333 56.390 28.250 1.00 0.00 N ATOM 74 CA LEU 102 16.940 57.159 27.153 1.00 0.00 C ATOM 75 C LEU 102 17.593 58.426 27.695 1.00 0.00 C ATOM 76 O LEU 102 18.752 58.708 27.386 1.00 0.00 O ATOM 77 N LYS 103 16.865 59.188 28.500 1.00 0.00 N ATOM 78 CA LYS 103 17.416 60.385 29.117 1.00 0.00 C ATOM 79 C LYS 103 18.613 60.002 29.973 1.00 0.00 C ATOM 80 O LYS 103 19.588 60.748 30.071 1.00 0.00 O ATOM 81 N VAL 104 18.533 58.827 30.589 1.00 0.00 N ATOM 82 CA VAL 104 19.618 58.344 31.428 1.00 0.00 C ATOM 83 C VAL 104 20.832 57.938 30.592 1.00 0.00 C ATOM 84 O VAL 104 21.969 58.186 30.978 1.00 0.00 O ATOM 85 N ASN 105 20.587 57.323 29.439 1.00 0.00 N ATOM 86 CA ASN 105 21.661 56.912 28.550 1.00 0.00 C ATOM 87 C ASN 105 22.451 58.140 28.145 1.00 0.00 C ATOM 88 O ASN 105 23.675 58.106 28.037 1.00 0.00 O ATOM 89 N TYR 106 21.725 59.225 27.921 1.00 0.00 N ATOM 90 CA TYR 106 22.328 60.491 27.562 1.00 0.00 C ATOM 91 C TYR 106 23.130 61.043 28.738 1.00 0.00 C ATOM 92 O TYR 106 24.252 61.511 28.558 1.00 0.00 O ATOM 93 N ILE 107 22.561 60.992 29.946 1.00 0.00 N ATOM 94 CA ILE 107 23.261 61.490 31.129 1.00 0.00 C ATOM 95 C ILE 107 24.544 60.692 31.408 1.00 0.00 C ATOM 96 O ILE 107 25.607 61.272 31.631 1.00 0.00 O ATOM 97 N LEU 108 24.435 59.362 31.393 1.00 0.00 N ATOM 98 CA LEU 108 25.579 58.475 31.640 1.00 0.00 C ATOM 99 C LEU 108 26.650 58.620 30.554 1.00 0.00 C ATOM 100 O LEU 108 27.839 58.724 30.855 1.00 0.00 O ATOM 101 N GLU 109 26.221 58.625 29.291 1.00 0.00 N ATOM 102 CA GLU 109 27.146 58.738 28.162 1.00 0.00 C ATOM 103 C GLU 109 27.847 60.091 28.148 1.00 0.00 C ATOM 104 O GLU 109 29.058 60.170 27.953 1.00 0.00 O ATOM 105 N SER 110 27.078 61.150 28.356 1.00 0.00 N ATOM 106 CA SER 110 27.615 62.498 28.394 1.00 0.00 C ATOM 107 C SER 110 28.586 62.673 29.553 1.00 0.00 C ATOM 108 O SER 110 29.467 63.519 29.495 1.00 0.00 O ATOM 109 N ARG 111 28.447 61.895 30.614 1.00 0.00 N ATOM 110 CA ARG 111 29.357 62.055 31.740 1.00 0.00 C ATOM 111 C ARG 111 30.816 61.854 31.341 1.00 0.00 C ATOM 112 O ARG 111 31.719 62.187 32.109 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 104 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 140 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 88 ARMSMC SURFACE . . . . . . . . 0.00 0.0 0 0.0 92 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 48 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 63 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 58 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 31 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.38 (Number of atoms: 26) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.38 26 36.6 71 CRMSCA CRN = ALL/NP . . . . . 0.1302 CRMSCA SECONDARY STRUCTURE . . 3.52 22 50.0 44 CRMSCA SURFACE . . . . . . . . 3.46 18 38.3 47 CRMSCA BURIED . . . . . . . . 3.22 8 33.3 24 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.11 104 29.5 353 CRMSMC SECONDARY STRUCTURE . . 3.23 88 40.2 219 CRMSMC SURFACE . . . . . . . . 3.23 72 30.6 235 CRMSMC BURIED . . . . . . . . 2.83 32 27.1 118 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 282 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 238 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 176 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 196 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 86 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.11 104 18.4 566 CRMSALL SECONDARY STRUCTURE . . 3.23 88 25.0 352 CRMSALL SURFACE . . . . . . . . 3.23 72 18.8 384 CRMSALL BURIED . . . . . . . . 2.83 32 17.6 182 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.196 1.000 0.500 26 36.6 71 ERRCA SECONDARY STRUCTURE . . 3.335 1.000 0.500 22 50.0 44 ERRCA SURFACE . . . . . . . . 3.240 1.000 0.500 18 38.3 47 ERRCA BURIED . . . . . . . . 3.095 1.000 0.500 8 33.3 24 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.907 1.000 0.500 104 29.5 353 ERRMC SECONDARY STRUCTURE . . 3.011 1.000 0.500 88 40.2 219 ERRMC SURFACE . . . . . . . . 2.994 1.000 0.500 72 30.6 235 ERRMC BURIED . . . . . . . . 2.713 1.000 0.500 32 27.1 118 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 282 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 238 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 176 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 196 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 86 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.907 1.000 0.500 104 18.4 566 ERRALL SECONDARY STRUCTURE . . 3.011 1.000 0.500 88 25.0 352 ERRALL SURFACE . . . . . . . . 2.994 1.000 0.500 72 18.8 384 ERRALL BURIED . . . . . . . . 2.713 1.000 0.500 32 17.6 182 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 4 15 24 26 26 71 DISTCA CA (P) 0.00 5.63 21.13 33.80 36.62 71 DISTCA CA (RMS) 0.00 1.68 2.47 3.11 3.38 DISTCA ALL (N) 1 19 65 100 104 104 566 DISTALL ALL (P) 0.18 3.36 11.48 17.67 18.37 566 DISTALL ALL (RMS) 0.68 1.61 2.29 2.93 3.11 DISTALL END of the results output