####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 102 ( 408), selected 102 , name T0612TS328_1-D1 # Molecule2: number of CA atoms 106 ( 816), selected 102 , name T0612-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0612TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 86 - 123 4.91 20.90 LCS_AVERAGE: 25.26 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 40 - 53 1.88 38.27 LCS_AVERAGE: 9.51 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 41 - 51 0.95 38.71 LONGEST_CONTINUOUS_SEGMENT: 10 103 - 112 0.99 26.04 LCS_AVERAGE: 5.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 102 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 20 H 20 4 5 9 2 4 4 4 4 6 7 7 7 7 19 21 22 26 30 32 44 47 47 49 LCS_GDT T 21 T 21 4 5 11 3 4 4 4 4 8 8 10 12 14 14 16 24 35 38 42 44 47 48 49 LCS_GDT G 22 G 22 5 6 11 3 4 5 5 5 6 7 9 10 14 14 16 22 26 30 42 44 47 48 49 LCS_GDT G 23 G 23 5 6 11 4 4 5 5 6 8 8 10 12 19 24 28 32 35 38 42 44 47 48 49 LCS_GDT I 24 I 24 5 6 11 4 4 5 5 6 6 8 10 13 19 24 31 33 36 39 42 44 47 48 49 LCS_GDT M 25 M 25 5 6 14 4 4 5 5 6 6 9 11 16 20 24 30 34 36 39 41 44 47 48 49 LCS_GDT I 26 I 26 5 6 14 4 4 5 5 6 6 7 11 13 17 19 22 26 34 37 41 42 44 46 47 LCS_GDT S 27 S 27 3 6 14 3 3 4 5 6 6 7 11 12 12 14 17 19 24 29 35 38 41 44 46 LCS_GDT S 28 S 28 3 9 14 3 3 5 7 8 9 10 11 12 12 12 14 17 22 25 28 31 36 42 44 LCS_GDT T 29 T 29 3 9 14 3 3 4 7 8 9 10 11 12 12 12 14 17 22 25 28 31 35 42 45 LCS_GDT G 30 G 30 5 9 14 5 5 6 8 9 9 10 11 12 12 12 12 13 15 15 22 26 30 37 40 LCS_GDT E 31 E 31 5 9 14 5 5 6 8 9 9 10 11 12 12 12 12 13 15 15 16 17 19 23 31 LCS_GDT V 32 V 32 5 9 14 5 5 6 8 9 9 10 11 12 12 12 12 13 15 15 16 17 20 24 30 LCS_GDT R 33 R 33 5 9 14 5 5 6 8 9 9 10 11 12 12 12 12 13 15 15 16 17 20 24 27 LCS_GDT V 34 V 34 5 9 14 5 5 5 8 9 9 10 11 12 12 12 12 13 15 15 16 17 20 24 27 LCS_GDT D 35 D 35 4 9 14 3 4 5 8 9 9 10 11 12 12 12 12 13 15 15 16 17 18 23 27 LCS_GDT N 36 N 36 4 9 14 3 4 6 8 9 9 10 11 12 12 12 12 13 15 15 16 17 19 24 27 LCS_GDT G 37 G 37 3 9 14 3 3 3 3 8 9 10 11 12 12 12 12 13 15 15 15 16 17 19 20 LCS_GDT S 38 S 38 3 9 16 3 3 4 8 9 9 10 11 12 12 12 12 13 15 15 16 17 20 24 27 LCS_GDT F 39 F 39 3 5 16 3 3 3 3 5 5 5 8 8 10 13 15 15 15 16 16 18 20 24 27 LCS_GDT H 40 H 40 3 13 16 3 3 3 6 7 11 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT S 41 S 41 10 13 16 4 7 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT D 42 D 42 10 13 16 4 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT V 43 V 43 10 13 16 4 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT D 44 D 44 10 13 16 4 7 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT V 45 V 45 10 13 16 3 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT S 46 S 46 10 13 16 3 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT V 48 V 48 10 13 16 4 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT T 49 T 49 10 13 16 4 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT T 50 T 50 10 13 16 4 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 20 24 27 LCS_GDT Q 51 Q 51 10 13 16 4 8 10 11 11 12 13 13 13 14 14 15 15 15 16 16 18 24 28 30 LCS_GDT A 52 A 52 4 13 18 4 4 9 11 11 12 13 13 13 14 14 15 15 15 16 20 26 28 31 35 LCS_GDT E 53 E 53 4 13 20 4 4 4 7 11 12 13 13 13 14 15 18 18 19 26 28 30 31 33 35 LCS_GDT G 55 G 55 3 4 27 0 3 3 5 7 9 12 14 14 18 18 21 23 26 29 29 31 33 36 39 LCS_GDT F 56 F 56 3 9 27 3 3 3 4 4 5 9 11 15 18 18 21 23 26 29 29 31 33 36 39 LCS_GDT L 57 L 57 9 11 27 3 4 10 10 11 12 14 15 17 19 21 23 25 26 29 29 31 33 37 40 LCS_GDT R 58 R 58 9 11 27 3 6 10 10 11 13 14 17 18 20 21 23 25 26 29 29 35 36 39 45 LCS_GDT A 59 A 59 9 11 27 3 6 10 10 11 13 14 17 18 20 21 29 32 38 40 41 43 46 48 49 LCS_GDT R 60 R 60 9 11 27 3 7 10 10 11 13 14 17 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT G 61 G 61 9 11 27 3 7 10 10 11 13 14 18 23 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT T 62 T 62 9 11 27 3 7 10 10 11 13 14 17 18 20 21 23 27 32 38 41 44 47 48 49 LCS_GDT I 63 I 63 9 11 27 3 7 10 10 11 13 14 17 18 20 21 23 25 26 29 29 31 33 36 39 LCS_GDT I 64 I 64 9 11 27 3 7 10 10 11 13 14 17 18 20 21 23 25 26 29 29 31 33 36 39 LCS_GDT S 65 S 65 9 11 27 3 7 10 10 11 13 14 17 18 20 21 23 25 26 29 29 31 33 36 39 LCS_GDT K 66 K 66 9 11 27 3 7 10 10 11 13 14 17 18 20 21 23 25 26 29 29 31 32 36 39 LCS_GDT S 67 S 67 7 11 27 3 4 6 9 11 13 14 17 18 20 21 23 25 26 29 29 31 32 36 39 LCS_GDT P 68 P 68 3 11 27 3 3 5 8 10 11 14 15 17 20 21 23 25 26 29 29 31 31 34 35 LCS_GDT K 69 K 69 6 9 27 3 5 7 9 11 13 14 17 18 20 21 23 25 26 29 29 31 32 36 39 LCS_GDT D 70 D 70 6 11 27 4 5 6 8 11 13 14 17 18 20 21 23 25 26 29 29 31 32 36 39 LCS_GDT Q 71 Q 71 6 11 27 4 5 6 8 10 11 14 17 18 20 21 23 25 26 29 29 31 33 36 39 LCS_GDT R 72 R 72 6 11 27 4 5 6 8 10 11 14 14 15 18 20 23 25 26 29 29 31 33 36 39 LCS_GDT L 73 L 73 6 11 27 4 5 6 8 10 11 14 15 17 20 21 23 25 26 29 29 31 33 36 39 LCS_GDT Q 74 Q 74 6 11 27 4 5 6 8 10 11 14 15 17 18 21 23 25 26 29 29 31 33 36 42 LCS_GDT Y 75 Y 75 6 11 27 4 5 6 8 10 11 14 17 18 20 21 23 26 32 38 42 44 47 48 49 LCS_GDT K 76 K 76 6 11 27 4 5 6 8 10 11 14 16 18 20 21 23 25 26 29 42 44 47 48 49 LCS_GDT F 77 F 77 6 11 27 4 5 6 8 10 11 14 17 18 20 21 23 25 26 29 39 43 46 48 49 LCS_GDT T 78 T 78 6 11 27 4 4 6 7 10 11 14 17 18 20 21 23 25 26 29 29 31 31 33 38 LCS_GDT W 79 W 79 4 11 27 4 4 6 8 11 13 14 17 18 20 21 23 25 26 29 29 31 33 36 39 LCS_GDT Y 80 Y 80 4 11 27 3 4 6 8 10 11 14 16 18 19 21 23 25 26 28 29 31 33 36 39 LCS_GDT D 81 D 81 4 6 27 3 4 4 4 8 10 14 15 17 19 20 22 23 26 27 29 31 33 36 39 LCS_GDT I 82 I 82 4 5 27 1 4 4 4 4 10 11 12 13 15 16 18 21 23 25 28 30 33 36 39 LCS_GDT N 83 N 83 4 7 19 3 4 4 5 7 9 9 11 11 12 13 14 18 20 24 28 30 33 36 39 LCS_GDT G 84 G 84 3 7 18 3 3 4 6 7 9 9 11 13 15 16 18 19 21 24 28 30 33 36 39 LCS_GDT A 85 A 85 5 7 13 4 5 5 6 6 9 9 11 11 12 13 14 15 17 19 25 28 33 36 39 LCS_GDT T 86 T 86 5 7 38 4 5 5 6 7 9 9 11 11 12 17 19 25 30 34 39 41 44 46 47 LCS_GDT V 87 V 87 5 7 38 4 5 5 6 7 9 9 11 11 16 18 25 33 38 40 42 44 47 48 49 LCS_GDT E 88 E 88 5 7 38 4 5 5 6 7 9 9 11 16 22 31 35 36 38 40 42 44 47 48 49 LCS_GDT D 89 D 89 5 7 38 4 5 6 6 9 12 15 19 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT E 90 E 90 4 7 38 3 4 4 5 8 12 14 18 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT G 91 G 91 4 10 38 3 4 6 8 9 12 16 19 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT V 92 V 92 4 11 38 3 4 4 7 11 13 16 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT S 93 S 93 6 11 38 3 5 6 10 11 12 16 19 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT W 94 W 94 6 11 38 3 5 6 10 11 12 15 18 20 23 28 33 36 38 40 41 44 47 48 49 LCS_GDT K 95 K 95 6 11 38 4 5 6 10 11 12 16 19 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT S 96 S 96 6 11 38 4 5 6 9 11 12 16 19 23 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT L 97 L 97 6 11 38 4 5 6 10 11 13 16 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT K 98 K 98 6 11 38 4 5 6 10 11 12 16 19 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT L 99 L 99 4 12 38 4 6 7 9 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT H 100 H 100 4 12 38 5 6 7 10 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT G 101 G 101 4 12 38 4 5 7 10 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT K 102 K 102 7 12 38 4 4 11 11 11 14 17 20 24 30 34 35 36 38 40 41 44 47 48 49 LCS_GDT Q 103 Q 103 10 12 38 5 7 11 11 11 13 16 19 24 29 34 35 36 38 40 40 41 43 46 49 LCS_GDT Q 104 Q 104 10 12 38 4 7 11 11 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT M 105 M 105 10 12 38 5 7 11 11 11 14 17 20 24 29 34 35 36 38 40 42 44 47 48 49 LCS_GDT Q 106 Q 106 10 12 38 4 6 11 11 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT V 107 V 107 10 12 38 5 6 11 11 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT T 108 T 108 10 12 38 4 6 11 11 12 14 17 20 24 29 34 35 36 38 40 42 44 47 48 49 LCS_GDT A 109 A 109 10 12 38 4 7 11 11 11 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT L 110 L 110 10 12 38 5 7 11 11 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT S 111 S 111 10 12 38 3 7 11 11 11 12 15 19 23 27 34 35 36 38 40 42 44 47 48 49 LCS_GDT P 112 P 112 10 12 38 3 7 11 11 11 12 16 19 23 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT N 113 N 113 3 12 38 2 5 8 10 11 13 16 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT A 114 A 114 3 10 38 1 3 4 7 12 14 17 20 24 29 34 35 36 38 40 42 44 47 48 49 LCS_GDT T 115 T 115 3 10 38 3 3 4 7 8 10 12 15 20 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT A 116 A 116 3 10 38 3 3 3 4 8 10 12 15 19 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT V 117 V 117 3 10 38 3 3 4 7 8 10 11 14 18 21 24 30 36 38 40 42 44 47 48 49 LCS_GDT R 118 R 118 6 10 38 3 6 6 6 8 10 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT C 119 C 119 6 10 38 3 6 6 7 8 10 15 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT E 120 E 120 6 10 38 4 6 6 7 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT L 121 L 121 6 10 38 4 6 6 7 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT Y 122 Y 122 6 10 38 4 6 6 7 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 LCS_GDT V 123 V 123 6 10 38 4 6 6 7 8 10 17 18 22 30 34 35 36 38 40 42 44 47 48 49 LCS_AVERAGE LCS_A: 13.52 ( 5.80 9.51 25.26 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 8 11 11 12 14 17 20 24 30 34 35 36 38 40 42 44 47 48 49 GDT PERCENT_AT 4.72 7.55 10.38 10.38 11.32 13.21 16.04 18.87 22.64 28.30 32.08 33.02 33.96 35.85 37.74 39.62 41.51 44.34 45.28 46.23 GDT RMS_LOCAL 0.26 0.65 1.03 1.03 2.08 2.26 2.52 2.99 3.31 3.93 4.06 4.12 4.22 4.47 4.76 5.59 5.70 7.56 6.11 6.20 GDT RMS_ALL_AT 25.07 38.46 26.30 26.30 21.00 21.29 21.11 21.20 21.42 21.07 21.16 21.23 21.26 21.10 20.94 21.28 21.11 21.28 21.11 21.27 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 20 H 20 23.267 6 0.087 0.087 24.766 0.000 0.000 LGA T 21 T 21 20.971 3 0.166 0.166 21.071 0.000 0.000 LGA G 22 G 22 20.583 0 0.170 0.170 21.244 0.000 0.000 LGA G 23 G 23 17.912 0 0.414 0.414 18.533 0.000 0.000 LGA I 24 I 24 14.397 4 0.028 0.028 15.442 0.000 0.000 LGA M 25 M 25 13.620 4 0.148 0.148 13.620 0.000 0.000 LGA I 26 I 26 14.681 4 0.625 0.625 16.951 0.000 0.000 LGA S 27 S 27 19.021 2 0.681 0.681 21.515 0.000 0.000 LGA S 28 S 28 21.652 2 0.044 0.044 22.913 0.000 0.000 LGA T 29 T 29 19.941 3 0.691 0.691 21.821 0.000 0.000 LGA G 30 G 30 21.263 0 0.705 0.705 21.263 0.000 0.000 LGA E 31 E 31 20.812 5 0.024 0.024 21.321 0.000 0.000 LGA V 32 V 32 20.424 3 0.136 0.136 20.424 0.000 0.000 LGA R 33 R 33 19.957 7 0.057 0.057 20.793 0.000 0.000 LGA V 34 V 34 21.248 3 0.293 0.293 21.857 0.000 0.000 LGA D 35 D 35 19.607 4 0.632 0.632 21.514 0.000 0.000 LGA N 36 N 36 22.622 4 0.477 0.477 24.469 0.000 0.000 LGA G 37 G 37 20.686 0 0.368 0.368 21.977 0.000 0.000 LGA S 38 S 38 25.350 2 0.610 0.610 28.348 0.000 0.000 LGA F 39 F 39 31.899 7 0.062 0.062 32.686 0.000 0.000 LGA H 40 H 40 35.167 6 0.372 0.372 36.132 0.000 0.000 LGA S 41 S 41 38.565 2 0.566 0.566 38.565 0.000 0.000 LGA D 42 D 42 37.416 4 0.183 0.183 37.886 0.000 0.000 LGA V 43 V 43 37.376 3 0.070 0.070 37.457 0.000 0.000 LGA D 44 D 44 37.251 4 0.188 0.188 37.502 0.000 0.000 LGA V 45 V 45 36.584 3 0.140 0.140 36.850 0.000 0.000 LGA S 46 S 46 36.737 2 0.063 0.063 36.832 0.000 0.000 LGA V 48 V 48 37.248 3 0.067 0.067 37.258 0.000 0.000 LGA T 49 T 49 37.359 3 0.053 0.053 37.359 0.000 0.000 LGA T 50 T 50 37.105 3 0.189 0.189 37.255 0.000 0.000 LGA Q 51 Q 51 37.390 5 0.064 0.064 37.417 0.000 0.000 LGA A 52 A 52 35.852 1 0.105 0.105 36.228 0.000 0.000 LGA E 53 E 53 36.109 5 0.084 0.084 36.109 0.000 0.000 LGA G 55 G 55 30.713 0 0.627 0.627 32.577 0.000 0.000 LGA F 56 F 56 24.317 7 0.420 0.420 26.752 0.000 0.000 LGA L 57 L 57 20.067 4 0.658 0.658 21.824 0.000 0.000 LGA R 58 R 58 16.424 7 0.091 0.091 17.760 0.000 0.000 LGA A 59 A 59 9.820 1 0.084 0.084 12.373 1.667 1.333 LGA R 60 R 60 5.887 7 0.086 0.086 7.168 29.643 10.779 LGA G 61 G 61 6.091 0 0.030 0.030 7.863 15.119 15.119 LGA T 62 T 62 10.711 3 0.072 0.072 13.155 0.714 0.408 LGA I 63 I 63 17.435 4 0.156 0.156 19.038 0.000 0.000 LGA I 64 I 64 22.425 4 0.157 0.157 25.615 0.000 0.000 LGA S 65 S 65 28.913 2 0.048 0.048 30.245 0.000 0.000 LGA K 66 K 66 33.750 5 0.602 0.602 37.985 0.000 0.000 LGA S 67 S 67 39.360 2 0.647 0.647 39.360 0.000 0.000 LGA P 68 P 68 39.560 3 0.124 0.124 39.560 0.000 0.000 LGA K 69 K 69 39.894 5 0.682 0.682 39.894 0.000 0.000 LGA D 70 D 70 33.193 4 0.065 0.065 35.614 0.000 0.000 LGA Q 71 Q 71 29.620 5 0.119 0.119 30.533 0.000 0.000 LGA R 72 R 72 24.295 7 0.058 0.058 26.652 0.000 0.000 LGA L 73 L 73 20.132 4 0.163 0.163 21.070 0.000 0.000 LGA Q 74 Q 74 15.613 5 0.086 0.086 17.408 0.000 0.000 LGA Y 75 Y 75 11.124 8 0.070 0.070 12.213 0.000 0.000 LGA K 76 K 76 12.108 5 0.103 0.103 12.925 0.000 0.000 LGA F 77 F 77 13.213 7 0.022 0.022 15.779 0.000 0.000 LGA T 78 T 78 19.155 3 0.073 0.073 19.423 0.000 0.000 LGA W 79 W 79 21.940 10 0.184 0.184 24.747 0.000 0.000 LGA Y 80 Y 80 25.875 8 0.059 0.059 26.532 0.000 0.000 LGA D 81 D 81 29.363 4 0.103 0.103 29.363 0.000 0.000 LGA I 82 I 82 29.384 4 0.630 0.630 29.750 0.000 0.000 LGA N 83 N 83 26.300 4 0.689 0.689 27.446 0.000 0.000 LGA G 84 G 84 20.719 0 0.695 0.695 22.445 0.000 0.000 LGA A 85 A 85 18.164 1 0.040 0.040 19.380 0.000 0.000 LGA T 86 T 86 11.511 3 0.113 0.113 13.877 0.000 0.000 LGA V 87 V 87 9.273 3 0.018 0.018 9.559 7.619 4.354 LGA E 88 E 88 8.933 5 0.025 0.025 9.068 6.071 2.698 LGA D 89 D 89 6.089 4 0.230 0.230 7.386 14.405 7.202 LGA E 90 E 90 6.919 5 0.048 0.048 6.919 15.238 6.772 LGA G 91 G 91 5.960 0 0.308 0.308 6.125 26.786 26.786 LGA V 92 V 92 4.318 3 0.049 0.049 5.250 32.976 18.844 LGA S 93 S 93 5.011 2 0.145 0.145 6.288 22.976 15.317 LGA W 94 W 94 7.932 10 0.121 0.121 7.932 13.810 3.946 LGA K 95 K 95 5.705 5 0.114 0.114 7.186 15.476 6.878 LGA S 96 S 96 6.073 2 0.036 0.036 6.073 33.214 22.143 LGA L 97 L 97 3.555 4 0.111 0.111 6.338 30.833 15.417 LGA K 98 K 98 4.870 5 0.270 0.270 4.870 43.810 19.471 LGA L 99 L 99 0.948 4 0.223 0.223 4.531 62.857 31.429 LGA H 100 H 100 2.206 6 0.040 0.040 2.206 77.381 30.952 LGA G 101 G 101 2.423 0 0.606 0.606 4.541 52.619 52.619 LGA K 102 K 102 3.117 5 0.222 0.222 5.373 44.167 19.630 LGA Q 103 Q 103 4.775 5 0.335 0.335 4.775 45.357 20.159 LGA Q 104 Q 104 2.138 5 0.160 0.160 3.554 53.810 23.915 LGA M 105 M 105 3.427 4 0.052 0.052 3.427 59.286 29.643 LGA Q 106 Q 106 2.698 5 0.040 0.040 3.269 53.571 23.810 LGA V 107 V 107 1.913 3 0.568 0.568 5.295 55.476 31.701 LGA T 108 T 108 3.109 3 0.035 0.035 3.109 65.238 37.279 LGA A 109 A 109 1.458 1 0.084 0.084 4.284 64.048 51.238 LGA L 110 L 110 1.781 4 0.078 0.078 3.970 63.690 31.845 LGA S 111 S 111 5.931 2 0.052 0.052 5.931 35.000 23.333 LGA P 112 P 112 6.583 3 0.494 0.494 6.720 15.357 8.776 LGA N 113 N 113 3.706 4 0.505 0.505 4.641 47.381 23.690 LGA A 114 A 114 3.112 1 0.604 0.604 3.301 59.643 47.714 LGA T 115 T 115 5.777 3 0.670 0.670 7.570 19.286 11.020 LGA A 116 A 116 6.617 1 0.099 0.099 6.617 18.333 14.667 LGA V 117 V 117 7.936 3 0.058 0.058 7.936 9.405 5.374 LGA R 118 R 118 3.670 7 0.388 0.388 4.837 38.810 14.113 LGA C 119 C 119 4.002 2 0.122 0.122 4.002 41.786 27.857 LGA E 120 E 120 2.587 5 0.107 0.107 3.474 53.571 23.810 LGA L 121 L 121 3.386 4 0.069 0.069 3.386 53.571 26.786 LGA Y 122 Y 122 3.548 8 0.113 0.113 4.854 38.810 12.937 LGA V 123 V 123 5.275 3 0.200 0.200 5.320 27.500 15.714 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 102 408 408 100.00 783 408 52.11 106 SUMMARY(RMSD_GDC): 19.518 19.458 19.458 13.833 7.712 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 102 106 4.0 20 2.99 19.104 17.339 0.648 LGA_LOCAL RMSD: 2.987 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 21.196 Number of assigned atoms: 102 Std_ASGN_ATOMS RMSD: 19.518 Standard rmsd on all 102 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.192673 * X + 0.665321 * Y + -0.721267 * Z + 21.488049 Y_new = -0.662310 * X + 0.454179 * Y + 0.595874 * Z + 13.344274 Z_new = 0.724032 * X + 0.592511 * Y + 0.353141 * Z + -75.822899 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.853893 -0.809630 1.033318 [DEG: -106.2203 -46.3884 59.2048 ] ZXZ: -2.261280 1.209870 0.884967 [DEG: -129.5618 69.3205 50.7048 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0612TS328_1-D1 REMARK 2: T0612-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0612TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 102 106 4.0 20 2.99 17.339 19.52 REMARK ---------------------------------------------------------- MOLECULE T0612TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0612 REMARK MODEL 1 REMARK PARENT 3bp5_B ATOM 61 N HIS 20 29.264 17.281 -32.780 1.00 3.00 N ATOM 62 CA HIS 20 28.595 18.258 -31.917 1.00 3.00 C ATOM 63 C HIS 20 27.392 17.662 -31.185 1.00 3.00 C ATOM 64 O HIS 20 26.506 17.087 -31.803 1.00 3.00 O ATOM 65 N THR 21 27.369 17.785 -29.863 1.00 3.00 N ATOM 66 CA THR 21 26.197 17.340 -29.107 1.00 3.00 C ATOM 67 C THR 21 25.589 18.556 -28.398 1.00 3.00 C ATOM 68 O THR 21 26.252 19.177 -27.557 1.00 3.00 O ATOM 69 N GLY 22 24.327 18.898 -28.734 1.00 3.00 N ATOM 70 CA GLY 22 23.704 20.073 -28.115 1.00 3.00 C ATOM 71 C GLY 22 23.081 19.754 -26.752 1.00 3.00 C ATOM 72 O GLY 22 22.602 18.631 -26.538 1.00 3.00 O ATOM 73 N GLY 23 23.117 20.735 -25.853 1.00 3.00 N ATOM 74 CA GLY 23 22.429 20.647 -24.545 1.00 3.00 C ATOM 75 C GLY 23 22.687 19.307 -23.845 1.00 3.00 C ATOM 76 O GLY 23 21.759 18.475 -23.659 1.00 3.00 O ATOM 77 N ILE 24 23.950 19.105 -23.468 1.00 3.00 N ATOM 78 CA ILE 24 24.435 17.860 -22.870 1.00 3.00 C ATOM 79 C ILE 24 23.742 17.609 -21.545 1.00 3.00 C ATOM 80 O ILE 24 23.600 18.521 -20.741 1.00 3.00 O ATOM 81 N MET 25 23.266 16.378 -21.352 1.00 3.00 N ATOM 82 CA MET 25 22.605 15.989 -20.104 1.00 3.00 C ATOM 83 C MET 25 23.397 14.926 -19.332 1.00 3.00 C ATOM 84 O MET 25 24.398 14.390 -19.828 1.00 3.00 O ATOM 85 N ILE 26 22.945 14.590 -18.123 1.00 3.00 N ATOM 86 CA ILE 26 23.656 13.571 -17.359 1.00 3.00 C ATOM 87 C ILE 26 23.710 12.251 -18.135 1.00 3.00 C ATOM 88 O ILE 26 24.751 11.594 -18.128 1.00 3.00 O ATOM 89 N SER 27 22.650 11.899 -18.859 1.00 3.00 N ATOM 90 CA SER 27 22.660 10.627 -19.603 1.00 3.00 C ATOM 91 C SER 27 23.686 10.619 -20.756 1.00 3.00 C ATOM 92 O SER 27 24.057 9.553 -21.264 1.00 3.00 O ATOM 93 N SER 28 24.144 11.796 -21.165 1.00 3.00 N ATOM 94 CA SER 28 25.222 11.902 -22.167 1.00 3.00 C ATOM 95 C SER 28 26.644 11.694 -21.640 1.00 3.00 C ATOM 96 O SER 28 27.599 11.663 -22.435 1.00 3.00 O ATOM 97 N THR 29 26.811 11.599 -20.323 1.00 3.00 N ATOM 98 CA THR 29 28.154 11.368 -19.807 1.00 3.00 C ATOM 99 C THR 29 28.606 9.929 -20.056 1.00 3.00 C ATOM 100 O THR 29 27.782 9.033 -20.286 1.00 3.00 O ATOM 101 N GLY 30 29.927 9.734 -20.044 1.00 3.00 N ATOM 102 CA GLY 30 30.509 8.416 -20.161 1.00 3.00 C ATOM 103 C GLY 30 31.499 8.344 -21.300 1.00 3.00 C ATOM 104 O GLY 30 31.993 9.369 -21.766 1.00 3.00 O ATOM 105 N GLU 31 31.723 7.132 -21.795 1.00 3.00 N ATOM 106 CA GLU 31 32.769 6.882 -22.772 1.00 3.00 C ATOM 107 C GLU 31 32.232 6.830 -24.192 1.00 3.00 C ATOM 108 O GLU 31 31.184 6.200 -24.435 1.00 3.00 O ATOM 109 N VAL 32 32.963 7.466 -25.109 1.00 3.00 N ATOM 110 CA VAL 32 32.635 7.478 -26.544 1.00 3.00 C ATOM 111 C VAL 32 33.737 7.512 -27.561 1.00 3.00 C ATOM 112 O VAL 32 34.460 8.521 -27.668 1.00 3.00 O ATOM 113 N ARG 33 33.950 6.473 -28.372 1.00 3.00 N ATOM 114 CA ARG 33 35.036 6.492 -29.344 1.00 3.00 C ATOM 115 C ARG 33 34.461 6.480 -30.764 1.00 3.00 C ATOM 116 O ARG 33 33.318 6.069 -30.998 1.00 3.00 O ATOM 117 N VAL 34 35.282 6.863 -31.703 1.00 3.00 N ATOM 118 CA VAL 34 34.948 6.893 -33.124 1.00 3.00 C ATOM 119 C VAL 34 35.169 5.480 -33.698 1.00 3.00 C ATOM 120 O VAL 34 36.096 5.231 -34.449 1.00 3.00 O ATOM 121 N ASP 35 34.329 4.570 -33.274 1.00 9.00 N ATOM 122 CA ASP 35 34.407 3.130 -33.618 1.00 9.00 C ATOM 123 C ASP 35 34.442 2.831 -35.104 1.00 9.00 C ATOM 124 O ASP 35 34.991 1.821 -35.546 1.00 9.00 O ATOM 125 N ASN 36 33.789 3.695 -35.858 1.00 3.00 N ATOM 126 CA ASN 36 33.580 3.448 -37.282 1.00 3.00 C ATOM 127 C ASN 36 34.438 4.257 -38.228 1.00 3.00 C ATOM 128 O ASN 36 34.362 4.112 -39.432 1.00 3.00 O ATOM 129 N GLY 37 35.432 4.975 -37.685 1.00 3.00 N ATOM 130 CA GLY 37 36.387 5.688 -38.508 1.00 3.00 C ATOM 131 C GLY 37 37.010 4.858 -39.618 1.00 3.00 C ATOM 132 O GLY 37 37.631 3.802 -39.414 1.00 3.00 O ATOM 133 N SER 38 36.824 5.349 -40.841 1.00 3.00 N ATOM 134 CA SER 38 37.362 4.746 -42.023 1.00 3.00 C ATOM 135 C SER 38 37.702 5.476 -43.326 1.00 3.00 C ATOM 136 O SER 38 36.972 6.361 -43.750 1.00 3.00 O ATOM 137 N PHE 39 38.831 5.114 -43.932 1.00 3.00 N ATOM 138 CA PHE 39 39.272 5.680 -45.200 1.00 3.00 C ATOM 139 C PHE 39 39.713 4.516 -46.066 1.00 3.00 C ATOM 140 O PHE 39 40.719 3.893 -45.766 1.00 3.00 O ATOM 141 N HIS 40 38.961 4.221 -47.125 1.00 3.00 N ATOM 142 CA HIS 40 39.248 3.059 -47.958 1.00 3.00 C ATOM 143 C HIS 40 39.273 1.795 -47.133 1.00 3.00 C ATOM 144 O HIS 40 38.294 1.478 -46.450 1.00 3.00 O ATOM 145 N SER 41 40.397 1.080 -47.179 1.00 3.00 N ATOM 146 CA SER 41 40.501 -0.209 -46.493 1.00 3.00 C ATOM 147 C SER 41 41.335 -0.116 -45.205 1.00 3.00 C ATOM 148 O SER 41 42.055 -1.049 -44.837 1.00 3.00 O ATOM 149 N ASP 42 41.211 1.012 -44.513 1.00 3.00 N ATOM 150 CA ASP 42 41.925 1.229 -43.261 1.00 3.00 C ATOM 151 C ASP 42 41.020 1.982 -42.308 1.00 3.00 C ATOM 152 O ASP 42 40.121 2.708 -42.738 1.00 3.00 O ATOM 153 N VAL 43 41.282 1.846 -41.009 1.00 3.00 N ATOM 154 CA VAL 43 40.477 2.581 -40.039 1.00 3.00 C ATOM 155 C VAL 43 41.296 2.834 -38.789 1.00 3.00 C ATOM 156 O VAL 43 42.358 2.247 -38.612 1.00 3.00 O ATOM 157 N ASP 44 40.793 3.693 -37.912 1.00 3.00 N ATOM 158 CA ASP 44 41.401 3.810 -36.587 1.00 3.00 C ATOM 159 C ASP 44 40.336 4.456 -35.726 1.00 3.00 C ATOM 160 O ASP 44 39.317 4.943 -36.246 1.00 3.00 O ATOM 161 N VAL 45 40.537 4.420 -34.414 1.00 3.00 N ATOM 162 CA VAL 45 39.599 5.026 -33.479 1.00 3.00 C ATOM 163 C VAL 45 40.304 5.515 -32.224 1.00 3.00 C ATOM 164 O VAL 45 41.468 5.187 -31.978 1.00 3.00 O ATOM 165 N SER 46 39.605 6.326 -31.433 1.00 3.00 N ATOM 166 CA SER 46 40.139 6.790 -30.153 1.00 3.00 C ATOM 167 C SER 46 38.990 6.840 -29.173 1.00 3.00 C ATOM 168 O SER 46 37.852 6.961 -29.597 1.00 3.00 O ATOM 173 N VAL 48 37.085 8.726 -25.906 1.00 3.00 N ATOM 174 CA VAL 48 36.941 10.084 -25.391 1.00 3.00 C ATOM 175 C VAL 48 36.007 9.935 -24.203 1.00 3.00 C ATOM 176 O VAL 48 35.061 9.155 -24.256 1.00 3.00 O ATOM 177 N THR 49 36.274 10.669 -23.131 1.00 3.00 N ATOM 178 CA THR 49 35.376 10.644 -21.975 1.00 3.00 C ATOM 179 C THR 49 34.667 11.979 -21.846 1.00 3.00 C ATOM 180 O THR 49 35.291 13.025 -21.924 1.00 3.00 O ATOM 181 N THR 50 33.351 11.936 -21.637 1.00 3.00 N ATOM 182 CA THR 50 32.590 13.134 -21.306 1.00 3.00 C ATOM 183 C THR 50 32.201 13.058 -19.829 1.00 3.00 C ATOM 184 O THR 50 31.512 12.115 -19.420 1.00 3.00 O ATOM 185 N GLN 51 32.694 14.013 -19.033 1.00 3.00 N ATOM 186 CA GLN 51 32.277 14.162 -17.642 1.00 3.00 C ATOM 187 C GLN 51 31.300 15.340 -17.612 1.00 3.00 C ATOM 188 O GLN 51 31.517 16.337 -18.304 1.00 3.00 O ATOM 189 N ALA 52 30.234 15.248 -16.834 1.00 3.00 N ATOM 190 CA ALA 52 29.315 16.390 -16.775 1.00 3.00 C ATOM 191 C ALA 52 29.307 17.015 -15.373 1.00 3.00 C ATOM 192 O ALA 52 29.686 16.356 -14.386 1.00 3.00 O ATOM 193 N GLU 53 28.895 18.282 -15.336 1.00 3.00 N ATOM 194 CA GLU 53 28.857 19.116 -14.128 1.00 3.00 C ATOM 195 C GLU 53 27.545 19.916 -14.141 1.00 3.00 C ATOM 196 O GLU 53 27.123 20.371 -15.200 1.00 3.00 O ATOM 201 N GLY 55 26.343 23.130 -11.573 1.00 3.00 N ATOM 202 CA GLY 55 26.636 23.918 -10.382 1.00 3.00 C ATOM 203 C GLY 55 25.443 23.930 -9.433 1.00 3.00 C ATOM 204 O GLY 55 24.278 24.057 -9.866 1.00 3.00 O ATOM 205 N PHE 56 25.725 23.774 -8.138 1.00 3.00 N ATOM 206 CA PHE 56 24.703 23.895 -7.088 1.00 3.00 C ATOM 207 C PHE 56 24.493 25.380 -6.835 1.00 3.00 C ATOM 208 O PHE 56 24.746 25.874 -5.737 1.00 3.00 O ATOM 209 N LEU 57 24.018 26.092 -7.859 1.00 3.00 N ATOM 210 CA LEU 57 23.932 27.563 -7.823 1.00 3.00 C ATOM 211 C LEU 57 22.620 28.104 -7.243 1.00 3.00 C ATOM 212 O LEU 57 22.620 29.177 -6.624 1.00 3.00 O ATOM 213 N ARG 58 21.508 27.393 -7.461 1.00 3.00 N ATOM 214 CA ARG 58 20.238 27.794 -6.878 1.00 3.00 C ATOM 215 C ARG 58 20.007 27.028 -5.587 1.00 3.00 C ATOM 216 O ARG 58 19.732 25.827 -5.600 1.00 3.00 O ATOM 217 N ALA 59 20.132 27.730 -4.476 1.00 3.00 N ATOM 218 CA ALA 59 19.954 27.107 -3.181 1.00 3.00 C ATOM 219 C ALA 59 18.677 27.672 -2.562 1.00 3.00 C ATOM 220 O ALA 59 18.591 28.869 -2.275 1.00 3.00 O ATOM 221 N ARG 60 17.681 26.820 -2.381 1.00 3.00 N ATOM 222 CA ARG 60 16.455 27.232 -1.703 1.00 3.00 C ATOM 223 C ARG 60 16.649 27.076 -0.189 1.00 3.00 C ATOM 224 O ARG 60 17.222 26.081 0.277 1.00 3.00 O ATOM 225 N GLY 61 16.179 28.059 0.570 1.00 3.00 N ATOM 226 CA GLY 61 16.318 28.039 2.022 1.00 3.00 C ATOM 227 C GLY 61 14.965 28.085 2.729 1.00 3.00 C ATOM 228 O GLY 61 13.987 28.570 2.166 1.00 3.00 O ATOM 229 N THR 62 14.918 27.568 3.956 1.00 3.00 N ATOM 230 CA THR 62 13.721 27.646 4.815 1.00 3.00 C ATOM 231 C THR 62 14.134 27.830 6.268 1.00 3.00 C ATOM 232 O THR 62 15.188 27.341 6.682 1.00 3.00 O ATOM 233 N ILE 63 13.316 28.564 7.028 1.00 3.00 N ATOM 234 CA ILE 63 13.454 28.663 8.479 1.00 3.00 C ATOM 235 C ILE 63 12.159 28.175 9.128 1.00 3.00 C ATOM 236 O ILE 63 11.113 28.191 8.502 1.00 3.00 O ATOM 237 N ILE 64 12.246 27.710 10.360 1.00 3.00 N ATOM 238 CA ILE 64 11.048 27.198 10.994 1.00 3.00 C ATOM 239 C ILE 64 11.178 27.103 12.492 1.00 3.00 C ATOM 240 O ILE 64 12.248 27.332 13.053 1.00 3.00 O ATOM 241 N SER 65 10.087 26.730 13.134 1.00 3.00 N ATOM 242 CA SER 65 10.094 26.644 14.575 1.00 3.00 C ATOM 243 C SER 65 9.129 25.594 15.096 1.00 3.00 C ATOM 244 O SER 65 8.105 25.313 14.471 1.00 3.00 O ATOM 245 N LYS 66 9.470 25.015 16.233 1.00 3.00 N ATOM 246 CA LYS 66 8.637 24.010 16.852 1.00 3.00 C ATOM 247 C LYS 66 8.549 24.261 18.343 1.00 3.00 C ATOM 248 O LYS 66 9.154 25.202 18.839 1.00 3.00 O ATOM 249 N SER 67 7.821 23.415 19.059 1.00 3.00 N ATOM 250 CA SER 67 7.665 23.570 20.500 1.00 3.00 C ATOM 251 C SER 67 8.977 23.406 21.277 1.00 3.00 C ATOM 252 O SER 67 9.194 24.088 22.286 1.00 3.00 O ATOM 253 N PRO 68 9.854 22.510 20.809 1.00 3.00 N ATOM 254 CA PRO 68 11.157 22.269 21.447 1.00 3.00 C ATOM 255 C PRO 68 11.911 23.581 21.692 1.00 3.00 C ATOM 256 O PRO 68 12.969 23.575 22.324 1.00 3.00 O ATOM 257 N LYS 69 11.394 24.694 21.181 1.00 3.00 N ATOM 258 CA LYS 69 12.111 25.970 21.283 1.00 3.00 C ATOM 259 C LYS 69 13.207 26.097 20.230 1.00 3.00 C ATOM 260 O LYS 69 13.844 27.146 20.092 1.00 3.00 O ATOM 261 N ASP 70 13.416 25.027 19.471 1.00 3.00 N ATOM 262 CA ASP 70 14.463 25.010 18.458 1.00 3.00 C ATOM 263 C ASP 70 14.003 25.588 17.129 1.00 3.00 C ATOM 264 O ASP 70 12.807 25.699 16.854 1.00 3.00 O ATOM 265 N GLN 71 14.967 25.970 16.305 1.00 3.00 N ATOM 266 CA GLN 71 14.656 26.391 14.963 1.00 3.00 C ATOM 267 C GLN 71 15.146 25.305 14.007 1.00 3.00 C ATOM 268 O GLN 71 16.116 24.597 14.304 1.00 3.00 O ATOM 269 N ARG 72 14.455 25.156 12.883 1.00 3.00 N ATOM 270 CA ARG 72 14.849 24.204 11.849 1.00 3.00 C ATOM 271 C ARG 72 15.188 24.973 10.574 1.00 3.00 C ATOM 272 O ARG 72 14.359 25.729 10.042 1.00 3.00 O ATOM 273 N LEU 73 16.420 24.796 10.104 1.00 3.00 N ATOM 274 CA LEU 73 16.900 25.515 8.940 1.00 3.00 C ATOM 275 C LEU 73 17.227 24.506 7.859 1.00 3.00 C ATOM 276 O LEU 73 17.862 23.505 8.140 1.00 3.00 O ATOM 277 N GLN 74 16.822 24.810 6.638 1.00 3.00 N ATOM 278 CA GLN 74 16.966 23.895 5.515 1.00 3.00 C ATOM 279 C GLN 74 17.586 24.608 4.331 1.00 3.00 C ATOM 280 O GLN 74 17.167 25.717 3.977 1.00 3.00 O ATOM 281 N TYR 75 18.581 23.962 3.722 1.00 3.00 N ATOM 282 CA TYR 75 19.065 24.330 2.408 1.00 3.00 C ATOM 283 C TYR 75 18.871 23.161 1.443 1.00 3.00 C ATOM 284 O TYR 75 19.087 22.012 1.827 1.00 3.00 O ATOM 285 N LYS 76 18.460 23.470 0.214 1.00 3.00 N ATOM 286 CA LYS 76 18.226 22.462 -0.823 1.00 3.00 C ATOM 287 C LYS 76 18.687 22.979 -2.179 1.00 3.00 C ATOM 288 O LYS 76 18.313 24.085 -2.578 1.00 3.00 O ATOM 289 N PHE 77 19.503 22.199 -2.888 1.00 3.00 N ATOM 290 CA PHE 77 20.010 22.635 -4.203 1.00 3.00 C ATOM 291 C PHE 77 20.187 21.412 -5.068 1.00 3.00 C ATOM 292 O PHE 77 20.455 20.327 -4.552 1.00 3.00 O ATOM 293 N THR 78 20.008 21.601 -6.371 1.00 3.00 N ATOM 294 CA THR 78 20.262 20.564 -7.379 1.00 3.00 C ATOM 295 C THR 78 21.554 20.826 -8.118 1.00 3.00 C ATOM 296 O THR 78 21.905 21.983 -8.403 1.00 3.00 O ATOM 297 N TRP 79 22.279 19.749 -8.407 1.00 3.00 N ATOM 298 CA TRP 79 23.500 19.876 -9.188 1.00 3.00 C ATOM 299 C TRP 79 24.091 18.520 -9.467 1.00 3.00 C ATOM 300 O TRP 79 23.445 17.485 -9.280 1.00 3.00 O ATOM 301 N TYR 80 25.315 18.522 -9.970 1.00 3.00 N ATOM 302 CA TYR 80 25.950 17.276 -10.377 1.00 3.00 C ATOM 303 C TYR 80 27.454 17.461 -10.231 1.00 3.00 C ATOM 304 O TYR 80 27.937 18.530 -10.601 1.00 3.00 O ATOM 305 N ASP 81 28.189 16.347 -10.081 1.00 3.00 N ATOM 306 CA ASP 81 28.049 15.248 -9.125 1.00 3.00 C ATOM 307 C ASP 81 27.521 15.582 -7.740 1.00 3.00 C ATOM 308 O ASP 81 26.983 16.683 -7.513 1.00 3.00 O ATOM 309 N ILE 82 27.620 14.620 -6.831 1.00 3.00 N ATOM 310 CA ILE 82 27.033 14.808 -5.493 1.00 3.00 C ATOM 311 C ILE 82 27.825 15.777 -4.616 1.00 3.00 C ATOM 312 O ILE 82 29.022 15.614 -4.460 1.00 3.00 O ATOM 313 N ASN 83 27.131 16.768 -4.050 1.00 3.00 N ATOM 314 CA ASN 83 27.729 17.769 -3.183 1.00 3.00 C ATOM 315 C ASN 83 27.691 17.283 -1.755 1.00 3.00 C ATOM 316 O ASN 83 26.813 16.530 -1.388 1.00 3.00 O ATOM 317 N GLY 84 28.637 17.754 -0.957 1.00 3.00 N ATOM 318 CA GLY 84 28.561 17.614 0.485 1.00 3.00 C ATOM 319 C GLY 84 28.111 18.968 0.995 1.00 3.00 C ATOM 320 O GLY 84 28.379 19.998 0.364 1.00 3.00 O ATOM 321 N ALA 85 27.438 18.983 2.143 1.00 3.00 N ATOM 322 CA ALA 85 27.004 20.240 2.722 1.00 3.00 C ATOM 323 C ALA 85 27.592 20.374 4.124 1.00 3.00 C ATOM 324 O ALA 85 27.591 19.406 4.889 1.00 3.00 O ATOM 325 N THR 86 28.118 21.548 4.440 1.00 3.00 N ATOM 326 CA THR 86 28.408 21.874 5.837 1.00 3.00 C ATOM 327 C THR 86 27.815 23.234 6.171 1.00 3.00 C ATOM 328 O THR 86 27.464 24.017 5.280 1.00 3.00 O ATOM 329 N VAL 87 27.645 23.484 7.466 1.00 3.00 N ATOM 330 CA VAL 87 27.121 24.743 7.967 1.00 3.00 C ATOM 331 C VAL 87 28.281 25.449 8.682 1.00 3.00 C ATOM 332 O VAL 87 28.938 24.863 9.542 1.00 3.00 O ATOM 333 N GLU 88 28.550 26.679 8.275 1.00 3.00 N ATOM 334 CA GLU 88 29.733 27.402 8.729 1.00 3.00 C ATOM 335 C GLU 88 29.600 27.775 10.203 1.00 3.00 C ATOM 336 O GLU 88 28.555 28.277 10.618 1.00 3.00 O ATOM 337 N ASP 89 30.665 27.522 10.966 1.00 3.00 N ATOM 338 CA ASP 89 30.749 27.854 12.401 1.00 3.00 C ATOM 339 C ASP 89 29.590 27.319 13.255 1.00 3.00 C ATOM 340 O ASP 89 29.078 28.015 14.134 1.00 3.00 O ATOM 341 N GLU 90 29.174 26.089 12.979 1.00 3.00 N ATOM 342 CA GLU 90 28.125 25.425 13.752 1.00 3.00 C ATOM 343 C GLU 90 28.687 24.087 14.203 1.00 3.00 C ATOM 344 O GLU 90 29.216 23.341 13.391 1.00 3.00 O ATOM 345 N GLY 91 28.592 23.803 15.497 1.00 3.00 N ATOM 346 CA GLY 91 29.112 22.553 16.051 1.00 3.00 C ATOM 347 C GLY 91 28.066 21.428 16.064 1.00 3.00 C ATOM 348 O GLY 91 28.421 20.253 16.092 1.00 3.00 O ATOM 349 N VAL 92 26.785 21.799 16.054 1.00 3.00 N ATOM 350 CA VAL 92 25.678 20.843 15.939 1.00 3.00 C ATOM 351 C VAL 92 25.707 20.232 14.532 1.00 3.00 C ATOM 352 O VAL 92 25.857 20.964 13.562 1.00 3.00 O ATOM 353 N SER 93 25.650 18.886 14.421 1.00 3.00 N ATOM 354 CA SER 93 25.593 18.245 13.102 1.00 3.00 C ATOM 355 C SER 93 24.244 18.413 12.399 1.00 3.00 C ATOM 356 O SER 93 23.198 18.389 13.038 1.00 3.00 O ATOM 357 N TRP 94 24.279 18.612 11.087 1.00 3.00 N ATOM 358 CA TRP 94 23.050 18.680 10.314 1.00 3.00 C ATOM 359 C TRP 94 22.753 17.294 9.768 1.00 3.00 C ATOM 360 O TRP 94 23.612 16.392 9.807 1.00 3.00 O ATOM 361 N LYS 95 21.530 17.126 9.271 1.00 3.00 N ATOM 362 CA LYS 95 21.172 15.940 8.537 1.00 3.00 C ATOM 363 C LYS 95 21.074 16.222 7.035 1.00 3.00 C ATOM 364 O LYS 95 20.192 16.977 6.605 1.00 3.00 O ATOM 365 N SER 96 21.965 15.596 6.265 1.00 3.00 N ATOM 366 CA SER 96 22.032 15.793 4.803 1.00 3.00 C ATOM 367 C SER 96 21.664 14.527 4.055 1.00 3.00 C ATOM 368 O SER 96 22.087 13.437 4.414 1.00 3.00 O ATOM 369 N LEU 97 20.861 14.683 3.013 1.00 3.00 N ATOM 370 CA LEU 97 20.435 13.551 2.218 1.00 3.00 C ATOM 371 C LEU 97 20.334 13.990 0.772 1.00 3.00 C ATOM 372 O LEU 97 20.434 15.191 0.477 1.00 3.00 O ATOM 373 N LYS 98 20.135 13.030 -0.130 1.00 3.00 N ATOM 374 CA LYS 98 19.929 13.358 -1.527 1.00 3.00 C ATOM 375 C LYS 98 20.385 12.597 -2.796 1.00 3.00 C ATOM 376 O LYS 98 21.494 12.829 -3.296 1.00 3.00 O ATOM 377 N LEU 99 19.576 11.642 -3.239 1.00 3.00 N ATOM 378 CA LEU 99 19.733 11.038 -4.563 1.00 3.00 C ATOM 379 C LEU 99 18.575 11.407 -5.507 1.00 3.00 C ATOM 380 O LEU 99 17.644 12.143 -5.137 1.00 3.00 O ATOM 381 N HIS 100 18.645 10.905 -6.724 1.00 3.00 N ATOM 382 CA HIS 100 17.742 11.364 -7.770 1.00 3.00 C ATOM 383 C HIS 100 18.504 12.042 -8.882 1.00 3.00 C ATOM 384 O HIS 100 19.674 12.446 -8.711 1.00 3.00 O ATOM 385 N GLY 101 17.871 12.198 -10.036 1.00 3.00 N ATOM 386 CA GLY 101 18.574 12.763 -11.191 1.00 3.00 C ATOM 387 C GLY 101 19.057 14.206 -11.009 1.00 3.00 C ATOM 388 O GLY 101 20.216 14.503 -11.321 1.00 3.00 O ATOM 389 N LYS 102 18.260 15.080 -10.335 1.00 3.00 N ATOM 390 CA LYS 102 18.790 16.407 -10.068 1.00 3.00 C ATOM 391 C LYS 102 20.020 16.391 -9.144 1.00 3.00 C ATOM 392 O LYS 102 20.887 17.242 -9.249 1.00 3.00 O ATOM 393 N GLN 103 20.079 15.386 -8.271 1.00 3.00 N ATOM 394 CA GLN 103 21.237 15.212 -7.392 1.00 3.00 C ATOM 395 C GLN 103 20.523 16.405 -6.802 1.00 3.00 C ATOM 396 O GLN 103 20.968 17.530 -6.989 1.00 3.00 O ATOM 397 N GLN 104 19.425 16.161 -6.081 1.00 3.00 N ATOM 398 CA GLN 104 18.840 17.158 -5.219 1.00 3.00 C ATOM 399 C GLN 104 19.319 16.851 -3.806 1.00 3.00 C ATOM 400 O GLN 104 18.976 15.817 -3.235 1.00 3.00 O ATOM 401 N MET 105 20.145 17.744 -3.276 1.00 3.00 N ATOM 402 CA MET 105 20.740 17.599 -1.951 1.00 3.00 C ATOM 403 C MET 105 20.046 18.541 -0.955 1.00 3.00 C ATOM 404 O MET 105 19.938 19.731 -1.218 1.00 3.00 O ATOM 405 N GLN 106 19.575 17.997 0.165 1.00 3.00 N ATOM 406 CA GLN 106 18.825 18.762 1.146 1.00 3.00 C ATOM 407 C GLN 106 19.557 18.614 2.460 1.00 3.00 C ATOM 408 O GLN 106 19.887 17.491 2.851 1.00 3.00 O ATOM 409 N VAL 107 19.791 19.729 3.148 1.00 3.00 N ATOM 410 CA VAL 107 20.456 19.690 4.458 1.00 3.00 C ATOM 411 C VAL 107 20.945 19.754 5.907 1.00 3.00 C ATOM 412 O VAL 107 21.680 18.868 6.351 1.00 3.00 O ATOM 413 N THR 108 20.546 20.793 6.639 1.00 3.00 N ATOM 414 CA THR 108 20.953 20.937 8.036 1.00 3.00 C ATOM 415 C THR 108 20.305 22.192 8.612 1.00 3.00 C ATOM 416 O THR 108 19.982 23.123 7.886 1.00 3.00 O ATOM 417 N ALA 109 20.097 22.214 9.924 1.00 3.00 N ATOM 418 CA ALA 109 19.479 23.364 10.571 1.00 3.00 C ATOM 419 C ALA 109 19.758 23.331 12.052 1.00 3.00 C ATOM 420 O ALA 109 20.028 22.276 12.612 1.00 3.00 O ATOM 421 N LEU 110 19.707 24.493 12.683 1.00 3.00 N ATOM 422 CA LEU 110 19.926 24.622 14.116 1.00 3.00 C ATOM 423 C LEU 110 18.929 25.607 14.651 1.00 3.00 C ATOM 424 O LEU 110 18.408 26.428 13.896 1.00 3.00 O ATOM 425 N SER 111 18.673 25.533 15.950 1.00 3.00 N ATOM 426 CA SER 111 17.749 26.471 16.562 1.00 3.00 C ATOM 427 C SER 111 18.592 27.557 17.195 1.00 3.00 C ATOM 428 O SER 111 19.593 27.283 17.843 1.00 3.00 O ATOM 429 N PRO 112 18.188 28.810 16.996 1.00 3.00 N ATOM 430 CA PRO 112 18.941 29.934 17.514 1.00 3.00 C ATOM 431 C PRO 112 19.638 30.956 18.429 1.00 3.00 C ATOM 432 O PRO 112 19.067 31.394 19.431 1.00 3.00 O ATOM 433 N ASN 113 20.871 31.296 18.071 1.00 3.00 N ATOM 434 CA ASN 113 21.705 32.224 18.816 1.00 3.00 C ATOM 435 C ASN 113 22.237 31.642 17.484 1.00 3.00 C ATOM 436 O ASN 113 21.461 31.391 16.551 1.00 3.00 O ATOM 437 N ALA 114 23.561 31.435 17.419 1.00 3.00 N ATOM 438 CA ALA 114 24.249 30.885 16.232 1.00 3.00 C ATOM 439 C ALA 114 24.202 31.825 15.018 1.00 3.00 C ATOM 440 O ALA 114 24.316 33.054 15.149 1.00 3.00 O ATOM 441 N THR 115 24.075 31.236 13.820 1.00 3.00 N ATOM 442 CA THR 115 24.000 32.013 12.575 1.00 3.00 C ATOM 443 C THR 115 23.133 31.270 11.567 1.00 3.00 C ATOM 444 O THR 115 23.232 30.041 11.412 1.00 3.00 O ATOM 445 N ALA 116 22.294 32.032 10.862 1.00 3.00 N ATOM 446 CA ALA 116 21.374 31.455 9.904 1.00 3.00 C ATOM 447 C ALA 116 21.670 31.523 8.422 1.00 3.00 C ATOM 448 O ALA 116 22.064 32.554 7.871 1.00 3.00 O ATOM 449 N VAL 117 21.459 30.373 7.801 1.00 3.00 N ATOM 450 CA VAL 117 21.611 30.154 6.378 1.00 3.00 C ATOM 451 C VAL 117 22.985 29.848 5.830 1.00 3.00 C ATOM 452 O VAL 117 23.102 29.403 4.678 1.00 3.00 O ATOM 453 N ARG 118 24.025 30.084 6.621 1.00 3.00 N ATOM 454 CA ARG 118 25.390 29.834 6.165 1.00 3.00 C ATOM 455 C ARG 118 25.579 28.346 5.827 1.00 3.00 C ATOM 456 O ARG 118 26.368 27.668 6.471 1.00 3.00 O ATOM 457 N CYS 119 24.822 27.841 4.855 1.00 3.00 N ATOM 458 CA CYS 119 24.988 26.472 4.390 1.00 3.00 C ATOM 459 C CYS 119 25.899 26.457 3.171 1.00 3.00 C ATOM 460 O CYS 119 25.760 27.263 2.257 1.00 3.00 O ATOM 461 N GLU 120 26.831 25.522 3.146 1.00 3.00 N ATOM 462 CA GLU 120 27.852 25.546 2.136 1.00 3.00 C ATOM 463 C GLU 120 27.900 24.238 1.395 1.00 3.00 C ATOM 464 O GLU 120 28.169 23.195 1.987 1.00 3.00 O ATOM 465 N LEU 121 27.647 24.310 0.088 1.00 3.00 N ATOM 466 CA LEU 121 27.658 23.149 -0.777 1.00 3.00 C ATOM 467 C LEU 121 29.005 23.007 -1.436 1.00 3.00 C ATOM 468 O LEU 121 29.410 23.881 -2.200 1.00 3.00 O ATOM 469 N TYR 122 29.673 21.896 -1.162 1.00 3.00 N ATOM 470 CA TYR 122 30.964 21.599 -1.756 1.00 3.00 C ATOM 471 C TYR 122 30.813 20.514 -2.800 1.00 3.00 C ATOM 472 O TYR 122 30.490 19.367 -2.490 1.00 3.00 O ATOM 473 N VAL 123 30.986 20.904 -4.060 1.00 3.00 N ATOM 474 CA VAL 123 30.913 19.980 -5.182 1.00 3.00 C ATOM 475 C VAL 123 32.349 19.546 -5.437 1.00 3.00 C ATOM 476 O VAL 123 33.070 20.200 -6.216 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 408 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 72.72 51.5 198 95.7 207 ARMSMC SECONDARY STRUCTURE . . 64.02 57.8 109 94.0 116 ARMSMC SURFACE . . . . . . . . 72.64 54.5 143 94.7 151 ARMSMC BURIED . . . . . . . . 72.92 43.6 55 98.2 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 79 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 49 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 58 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 19.52 (Number of atoms: 102) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 19.52 102 96.2 106 CRMSCA CRN = ALL/NP . . . . . 0.1913 CRMSCA SECONDARY STRUCTURE . . 18.59 57 98.3 58 CRMSCA SURFACE . . . . . . . . 18.58 74 94.9 78 CRMSCA BURIED . . . . . . . . 21.81 28 100.0 28 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 19.46 408 78.3 521 CRMSMC SECONDARY STRUCTURE . . 18.57 228 79.2 288 CRMSMC SURFACE . . . . . . . . 18.56 296 77.5 382 CRMSMC BURIED . . . . . . . . 21.66 112 80.6 139 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 392 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 334 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 251 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 289 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 103 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 19.46 408 50.0 816 CRMSALL SECONDARY STRUCTURE . . 18.57 228 47.2 483 CRMSALL SURFACE . . . . . . . . 18.56 296 49.3 601 CRMSALL BURIED . . . . . . . . 21.66 112 52.1 215 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.546 0.604 0.302 102 96.2 106 ERRCA SECONDARY STRUCTURE . . 12.599 0.576 0.288 57 98.3 58 ERRCA SURFACE . . . . . . . . 12.726 0.595 0.298 74 94.9 78 ERRCA BURIED . . . . . . . . 15.712 0.629 0.314 28 100.0 28 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.490 0.604 0.302 408 78.3 521 ERRMC SECONDARY STRUCTURE . . 12.619 0.579 0.289 228 79.2 288 ERRMC SURFACE . . . . . . . . 12.672 0.592 0.296 296 77.5 382 ERRMC BURIED . . . . . . . . 15.652 0.634 0.317 112 80.6 139 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 392 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 334 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 251 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 289 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 103 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.490 0.604 0.302 408 50.0 816 ERRALL SECONDARY STRUCTURE . . 12.619 0.579 0.289 228 47.2 483 ERRALL SURFACE . . . . . . . . 12.672 0.592 0.296 296 49.3 601 ERRALL BURIED . . . . . . . . 15.652 0.634 0.317 112 52.1 215 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 3 39 102 106 DISTCA CA (P) 0.00 0.00 0.00 2.83 36.79 106 DISTCA CA (RMS) 0.00 0.00 0.00 4.00 7.72 DISTCA ALL (N) 0 0 0 11 150 408 816 DISTALL ALL (P) 0.00 0.00 0.00 1.35 18.38 816 DISTALL ALL (RMS) 0.00 0.00 0.00 4.28 7.62 DISTALL END of the results output