####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 93 ( 372), selected 93 , name T0612AL396_1-D1 # Molecule2: number of CA atoms 106 ( 816), selected 93 , name T0612-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0612AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 62 - 84 4.97 16.06 LCS_AVERAGE: 17.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 74 - 84 1.56 18.70 LCS_AVERAGE: 6.93 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 20 - 27 0.94 31.76 LCS_AVERAGE: 4.64 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 93 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 20 H 20 8 9 20 3 5 6 8 11 14 15 15 16 17 18 20 20 21 22 23 24 24 24 25 LCS_GDT T 21 T 21 8 9 20 3 7 7 8 8 14 15 15 16 17 18 20 20 22 23 23 24 26 29 29 LCS_GDT G 22 G 22 8 9 20 5 7 7 8 11 14 15 15 16 17 18 20 20 22 23 25 26 27 29 32 LCS_GDT G 23 G 23 8 9 20 5 7 7 8 11 14 15 15 16 17 18 20 20 22 23 25 26 27 30 34 LCS_GDT I 24 I 24 8 9 20 5 7 7 8 11 14 15 15 16 17 18 20 21 23 25 30 34 35 39 42 LCS_GDT M 25 M 25 8 9 20 5 7 7 8 11 14 15 15 16 17 18 20 20 25 26 30 33 39 42 45 LCS_GDT I 26 I 26 8 9 20 5 7 7 8 11 14 15 15 20 22 26 29 31 32 35 38 39 42 43 45 LCS_GDT S 27 S 27 8 9 20 5 7 7 8 10 14 15 15 19 23 24 26 29 31 34 35 38 42 43 45 LCS_GDT S 28 S 28 3 9 20 3 3 3 5 8 11 17 18 22 23 24 27 29 31 34 35 38 42 43 45 LCS_GDT T 29 T 29 3 7 20 3 3 3 5 6 8 9 11 14 20 24 25 27 30 32 35 38 42 43 45 LCS_GDT G 30 G 30 4 7 20 3 4 5 7 10 11 17 18 22 24 25 29 31 32 35 38 39 42 43 45 LCS_GDT E 31 E 31 4 7 20 3 4 5 6 7 9 11 13 22 24 25 29 31 32 35 38 39 42 43 45 LCS_GDT V 32 V 32 5 7 20 4 5 6 6 11 14 15 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT R 33 R 33 5 7 20 4 5 6 7 11 14 15 15 16 24 26 27 29 32 34 38 39 41 42 44 LCS_GDT V 34 V 34 5 7 20 4 5 6 7 11 14 15 15 16 17 18 20 20 23 26 28 31 35 39 41 LCS_GDT D 35 D 35 5 7 20 4 5 6 7 11 14 15 15 16 17 18 20 20 22 23 25 26 29 32 36 LCS_GDT N 36 N 36 5 6 20 3 5 6 8 11 14 15 15 16 17 18 20 20 22 23 25 26 27 30 32 LCS_GDT G 37 G 37 5 6 20 3 4 6 7 10 14 15 15 16 17 18 20 20 22 23 25 26 27 30 32 LCS_GDT S 38 S 38 3 6 20 3 3 4 5 7 9 11 12 14 15 18 20 20 22 23 25 26 27 30 32 LCS_GDT F 39 F 39 3 6 20 3 3 4 5 6 9 11 12 13 14 18 18 19 21 23 25 26 27 30 32 LCS_GDT H 40 H 40 3 6 12 3 3 4 5 6 8 8 12 13 14 15 15 16 18 19 20 21 27 28 32 LCS_GDT S 41 S 41 3 6 12 3 3 4 5 5 8 8 8 10 11 12 15 16 18 19 20 20 21 22 22 LCS_GDT D 42 D 42 3 6 12 3 3 4 5 6 8 8 8 10 11 15 15 16 18 19 20 20 21 22 24 LCS_GDT V 43 V 43 4 6 12 3 3 4 4 6 8 8 8 10 11 12 13 15 18 19 20 20 21 23 25 LCS_GDT D 44 D 44 4 4 12 3 3 4 4 4 6 6 9 10 11 12 14 15 16 19 19 21 23 24 26 LCS_GDT V 45 V 45 4 4 12 3 3 4 4 4 6 6 7 8 11 12 13 14 14 17 19 21 26 27 27 LCS_GDT S 46 S 46 4 4 12 0 3 4 4 4 6 6 7 8 11 12 13 14 14 16 19 24 26 27 28 LCS_GDT V 48 V 48 3 5 12 0 3 3 4 5 5 6 7 8 10 14 15 15 17 21 24 25 26 27 28 LCS_GDT T 49 T 49 3 5 10 3 3 4 7 7 8 9 9 11 11 14 15 16 20 22 24 25 28 31 35 LCS_GDT T 50 T 50 3 5 11 3 3 4 4 5 7 8 10 11 14 14 16 21 23 26 29 31 35 37 40 LCS_GDT Q 51 Q 51 3 5 11 3 3 4 4 5 7 8 8 11 12 14 16 19 23 26 28 30 35 37 39 LCS_GDT A 52 A 52 3 5 11 3 3 4 4 5 5 7 9 13 14 19 23 26 27 29 31 34 39 41 41 LCS_GDT E 53 E 53 4 4 11 3 3 4 4 5 5 6 10 11 15 17 19 20 22 29 31 34 39 41 41 LCS_GDT G 55 G 55 4 4 11 2 3 4 4 5 5 6 7 8 9 9 10 19 20 23 23 28 32 33 35 LCS_GDT F 56 F 56 4 4 11 2 3 4 4 4 4 6 7 8 9 16 19 22 22 24 24 29 32 34 40 LCS_GDT L 57 L 57 4 4 11 3 3 4 4 4 5 6 10 11 15 17 19 20 22 24 24 30 35 37 40 LCS_GDT R 58 R 58 3 3 11 3 3 4 4 5 5 6 7 8 15 17 23 26 26 29 32 34 39 42 43 LCS_GDT A 59 A 59 3 3 13 3 3 4 4 5 15 15 17 20 21 24 27 29 30 33 34 38 42 43 45 LCS_GDT R 60 R 60 3 3 17 3 3 4 4 5 15 15 17 20 21 24 27 29 30 33 34 36 42 43 45 LCS_GDT G 61 G 61 3 3 17 0 3 3 3 4 7 9 11 19 21 24 27 29 30 33 34 36 42 43 45 LCS_GDT T 62 T 62 3 3 23 1 3 3 9 15 17 19 20 23 25 26 28 31 32 34 38 39 42 43 45 LCS_GDT I 63 I 63 3 3 23 1 3 3 8 13 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT I 64 I 64 3 3 23 1 3 3 3 3 5 8 17 22 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT S 65 S 65 3 7 23 3 3 4 7 9 12 17 19 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT K 66 K 66 3 7 23 3 3 5 7 7 8 9 10 16 24 26 28 31 32 35 38 39 41 42 45 LCS_GDT S 67 S 67 4 7 23 3 3 5 7 7 8 9 10 12 14 18 20 27 32 35 38 39 41 42 45 LCS_GDT P 68 P 68 4 7 23 3 3 5 6 6 8 9 9 11 14 18 20 27 32 35 38 39 41 42 45 LCS_GDT K 69 K 69 4 7 23 3 3 5 7 7 8 9 10 12 14 16 19 22 32 35 38 39 40 42 44 LCS_GDT D 70 D 70 4 7 23 3 4 5 6 7 8 9 10 12 14 16 19 27 32 35 38 39 41 42 45 LCS_GDT Q 71 Q 71 4 7 23 3 4 4 7 7 8 11 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT R 72 R 72 4 5 23 3 4 5 5 7 8 18 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT L 73 L 73 4 10 23 3 4 4 7 8 15 18 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT Q 74 Q 74 7 11 23 3 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT Y 75 Y 75 7 11 23 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT K 76 K 76 7 11 23 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT F 77 F 77 7 11 23 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT T 78 T 78 7 11 23 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT W 79 W 79 7 11 23 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT Y 80 Y 80 7 11 23 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT D 81 D 81 7 11 23 5 7 11 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT I 82 I 82 7 11 23 5 6 8 12 15 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT N 83 N 83 7 11 23 5 7 11 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT G 84 G 84 7 11 23 5 10 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT K 95 K 95 7 10 16 4 6 7 8 9 10 11 12 13 14 16 17 18 21 24 24 26 30 33 38 LCS_GDT S 96 S 96 7 10 16 4 6 7 8 9 10 11 12 13 14 15 15 17 19 23 24 26 27 33 38 LCS_GDT L 97 L 97 7 10 16 4 6 7 8 9 10 11 12 13 14 15 16 19 21 23 24 26 28 33 38 LCS_GDT K 98 K 98 7 10 16 4 6 7 8 9 10 11 12 13 15 15 17 19 21 23 24 26 26 33 38 LCS_GDT L 99 L 99 7 10 16 4 6 7 8 9 10 11 12 14 15 18 18 19 21 23 25 26 27 30 36 LCS_GDT H 100 H 100 7 10 16 3 6 7 8 9 10 11 12 14 15 18 18 19 21 23 25 26 27 30 34 LCS_GDT G 101 G 101 7 10 16 3 4 7 8 9 10 11 12 13 14 15 17 19 21 23 25 26 27 30 32 LCS_GDT K 102 K 102 3 10 16 3 5 7 8 9 10 11 12 13 14 15 15 16 20 21 25 26 27 30 30 LCS_GDT Q 103 Q 103 3 10 16 3 4 4 4 9 10 11 12 13 14 15 15 16 19 21 24 26 27 30 32 LCS_GDT Q 104 Q 104 3 10 16 0 3 5 5 9 10 11 12 13 14 15 15 16 18 23 24 26 27 30 32 LCS_GDT M 105 M 105 3 3 18 0 3 3 6 7 8 10 11 12 13 14 15 18 19 23 25 28 35 39 42 LCS_GDT Q 106 Q 106 3 3 19 1 3 3 6 7 8 9 11 12 13 14 15 18 19 23 25 30 35 39 42 LCS_GDT V 107 V 107 3 3 19 0 3 3 6 7 8 9 10 12 13 14 17 18 20 23 25 30 35 39 42 LCS_GDT T 108 T 108 3 3 19 0 3 4 4 4 6 7 11 13 14 16 18 24 32 35 38 39 41 42 45 LCS_GDT A 109 A 109 3 3 19 0 3 4 4 4 5 8 11 15 15 17 27 31 32 35 38 39 42 43 45 LCS_GDT L 110 L 110 3 6 19 3 3 4 5 7 11 11 11 15 19 24 29 31 32 35 38 39 41 43 45 LCS_GDT S 111 S 111 3 6 19 3 3 3 3 7 11 11 11 15 22 25 29 31 32 34 38 39 42 43 45 LCS_GDT P 112 P 112 3 6 19 3 3 3 5 8 11 11 12 14 18 19 23 26 28 31 33 38 42 43 45 LCS_GDT N 113 N 113 3 6 19 3 3 3 5 8 11 11 12 14 19 22 24 26 29 32 33 38 42 43 45 LCS_GDT A 114 A 114 5 7 19 4 5 5 6 8 11 14 17 19 20 22 24 26 30 32 33 38 42 43 45 LCS_GDT T 115 T 115 5 10 19 4 5 5 8 9 11 11 11 14 19 20 22 22 24 31 31 34 38 42 43 LCS_GDT A 116 A 116 5 10 19 4 5 5 6 9 11 11 13 16 19 20 24 25 29 31 33 36 42 43 44 LCS_GDT V 117 V 117 6 10 19 4 5 7 8 12 15 15 16 19 21 22 26 28 30 33 33 38 42 43 45 LCS_GDT R 118 R 118 7 10 19 3 9 10 12 15 15 16 18 20 23 25 27 31 32 34 37 39 42 43 45 LCS_GDT C 119 C 119 7 10 19 6 11 13 14 16 16 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT E 120 E 120 7 10 19 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT L 121 L 121 7 10 19 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT Y 122 Y 122 7 10 19 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT V 123 V 123 7 10 19 6 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_GDT R 124 R 124 7 10 19 3 4 9 9 16 16 19 20 23 25 26 29 31 32 35 38 39 42 43 45 LCS_AVERAGE LCS_A: 9.63 ( 4.64 6.93 17.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 13 14 16 17 19 20 23 25 26 29 31 32 35 38 39 42 43 45 GDT PERCENT_AT 7.55 10.38 12.26 13.21 15.09 16.04 17.92 18.87 21.70 23.58 24.53 27.36 29.25 30.19 33.02 35.85 36.79 39.62 40.57 42.45 GDT RMS_LOCAL 0.30 0.48 0.77 1.04 1.38 1.93 2.20 2.46 2.98 3.21 3.50 4.18 4.36 4.44 5.24 5.41 5.50 5.87 7.67 6.20 GDT RMS_ALL_AT 18.69 18.70 19.01 18.81 19.27 17.19 17.47 17.38 16.94 16.81 17.04 17.47 17.36 17.39 17.03 16.87 16.89 18.36 18.36 17.95 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 20 H 20 39.590 6 0.121 0.121 41.507 0.000 0.000 LGA T 21 T 21 33.420 3 0.122 0.122 35.937 0.000 0.000 LGA G 22 G 22 26.822 0 0.181 0.181 28.894 0.000 0.000 LGA G 23 G 23 21.422 0 0.170 0.170 23.366 0.000 0.000 LGA I 24 I 24 14.254 4 0.035 0.035 16.784 0.000 0.000 LGA M 25 M 25 12.585 4 0.043 0.043 12.866 0.000 0.000 LGA I 26 I 26 8.124 4 0.352 0.352 12.203 1.548 0.774 LGA S 27 S 27 13.347 2 0.623 0.623 13.527 0.000 0.000 LGA S 28 S 28 13.074 2 0.170 0.170 13.074 0.000 0.000 LGA T 29 T 29 13.693 3 0.177 0.177 13.693 0.000 0.000 LGA G 30 G 30 9.223 0 0.608 0.608 10.212 2.857 2.857 LGA E 31 E 31 8.919 5 0.121 0.121 8.938 7.262 3.228 LGA V 32 V 32 6.035 3 0.594 0.594 7.925 11.071 6.327 LGA R 33 R 33 10.238 7 0.022 0.022 13.185 0.714 0.260 LGA V 34 V 34 17.137 3 0.039 0.039 18.687 0.000 0.000 LGA D 35 D 35 22.083 4 0.160 0.160 25.193 0.000 0.000 LGA N 36 N 36 28.584 4 0.274 0.274 30.041 0.000 0.000 LGA G 37 G 37 33.335 0 0.306 0.306 34.046 0.000 0.000 LGA S 38 S 38 35.743 2 0.632 0.632 35.743 0.000 0.000 LGA F 39 F 39 33.630 7 0.164 0.164 35.394 0.000 0.000 LGA H 40 H 40 34.253 6 0.068 0.068 34.253 0.000 0.000 LGA S 41 S 41 33.330 2 0.677 0.677 34.443 0.000 0.000 LGA D 42 D 42 31.926 4 0.199 0.199 31.926 0.000 0.000 LGA V 43 V 43 28.308 3 0.591 0.591 30.059 0.000 0.000 LGA D 44 D 44 24.688 4 0.101 0.101 25.892 0.000 0.000 LGA V 45 V 45 21.998 3 0.606 0.606 24.987 0.000 0.000 LGA S 46 S 46 23.458 2 0.042 0.042 23.458 0.000 0.000 LGA V 48 V 48 26.171 3 0.597 0.597 26.171 0.000 0.000 LGA T 49 T 49 23.592 3 0.622 0.622 24.603 0.000 0.000 LGA T 50 T 50 19.721 3 0.206 0.206 20.511 0.000 0.000 LGA Q 51 Q 51 22.063 5 0.416 0.416 22.063 0.000 0.000 LGA A 52 A 52 16.546 1 0.449 0.449 18.347 0.000 0.000 LGA E 53 E 53 14.990 5 0.105 0.105 15.189 0.000 0.000 LGA G 55 G 55 14.592 0 0.269 0.269 14.882 0.000 0.000 LGA F 56 F 56 12.317 7 0.539 0.539 14.123 0.000 0.000 LGA L 57 L 57 14.006 4 0.649 0.649 14.006 0.000 0.000 LGA R 58 R 58 9.629 7 0.595 0.595 10.919 0.952 0.346 LGA A 59 A 59 5.813 1 0.598 0.598 6.894 21.786 17.429 LGA R 60 R 60 6.376 7 0.622 0.622 8.271 14.167 5.152 LGA G 61 G 61 6.617 0 0.600 0.600 6.617 24.405 24.405 LGA T 62 T 62 3.066 3 0.604 0.604 4.491 48.571 27.755 LGA I 63 I 63 3.378 4 0.632 0.632 3.895 50.119 25.060 LGA I 64 I 64 5.330 4 0.590 0.590 5.330 31.548 15.774 LGA S 65 S 65 5.755 2 0.651 0.651 6.216 22.738 15.159 LGA K 66 K 66 9.054 5 0.333 0.333 10.169 1.667 0.741 LGA S 67 S 67 11.287 2 0.377 0.377 11.287 0.000 0.000 LGA P 68 P 68 10.775 3 0.106 0.106 10.994 0.000 0.000 LGA K 69 K 69 12.260 5 0.669 0.669 12.260 0.000 0.000 LGA D 70 D 70 11.227 4 0.151 0.151 11.954 1.429 0.714 LGA Q 71 Q 71 5.990 5 0.136 0.136 7.919 17.857 7.937 LGA R 72 R 72 5.618 7 0.597 0.597 7.790 19.048 6.926 LGA L 73 L 73 4.933 4 0.661 0.661 4.933 40.476 20.238 LGA Q 74 Q 74 0.069 5 0.464 0.464 1.814 86.190 38.307 LGA Y 75 Y 75 1.472 8 0.016 0.016 1.472 83.690 27.897 LGA K 76 K 76 1.464 5 0.116 0.116 1.464 81.429 36.190 LGA F 77 F 77 1.654 7 0.124 0.124 1.938 75.000 27.273 LGA T 78 T 78 1.868 3 0.115 0.115 2.292 68.810 39.320 LGA W 79 W 79 2.414 10 0.011 0.011 2.414 66.786 19.082 LGA Y 80 Y 80 1.768 8 0.027 0.027 2.112 77.381 25.794 LGA D 81 D 81 1.486 4 0.036 0.036 1.552 79.286 39.643 LGA I 82 I 82 3.265 4 0.023 0.023 3.570 50.119 25.060 LGA N 83 N 83 2.775 4 0.125 0.125 2.888 67.143 33.571 LGA G 84 G 84 1.049 0 0.151 0.151 2.125 75.119 75.119 LGA K 95 K 95 21.336 5 0.093 0.093 21.336 0.000 0.000 LGA S 96 S 96 20.656 2 0.048 0.048 21.108 0.000 0.000 LGA L 97 L 97 20.676 4 0.197 0.197 20.676 0.000 0.000 LGA K 98 K 98 20.467 5 0.089 0.089 21.377 0.000 0.000 LGA L 99 L 99 20.796 4 0.124 0.124 20.999 0.000 0.000 LGA H 100 H 100 22.203 6 0.609 0.609 23.396 0.000 0.000 LGA G 101 G 101 27.078 0 0.025 0.025 27.496 0.000 0.000 LGA K 102 K 102 27.162 5 0.293 0.293 27.212 0.000 0.000 LGA Q 103 Q 103 27.402 5 0.650 0.650 27.402 0.000 0.000 LGA Q 104 Q 104 23.411 5 0.681 0.681 24.587 0.000 0.000 LGA M 105 M 105 17.780 4 0.590 0.590 19.469 0.000 0.000 LGA Q 106 Q 106 17.125 5 0.676 0.676 18.425 0.000 0.000 LGA V 107 V 107 16.556 3 0.611 0.611 16.556 0.000 0.000 LGA T 108 T 108 11.467 3 0.594 0.594 13.138 0.000 0.000 LGA A 109 A 109 10.256 1 0.649 0.649 10.279 0.119 0.095 LGA L 110 L 110 10.158 4 0.665 0.665 12.579 0.000 0.000 LGA S 111 S 111 9.156 2 0.567 0.567 12.606 1.071 0.714 LGA P 112 P 112 13.690 3 0.638 0.638 14.421 0.000 0.000 LGA N 113 N 113 14.567 4 0.647 0.647 14.567 0.000 0.000 LGA A 114 A 114 14.352 1 0.691 0.691 14.452 0.000 0.000 LGA T 115 T 115 16.266 3 0.202 0.202 16.266 0.000 0.000 LGA A 116 A 116 13.283 1 0.080 0.080 14.193 0.357 0.286 LGA V 117 V 117 8.000 3 0.561 0.561 10.090 7.024 4.014 LGA R 118 R 118 5.089 7 0.037 0.037 6.038 29.405 10.693 LGA C 119 C 119 2.996 2 0.051 0.051 3.761 51.905 34.603 LGA E 120 E 120 1.750 5 0.135 0.135 2.030 70.833 31.481 LGA L 121 L 121 2.049 4 0.034 0.034 2.049 70.833 35.417 LGA Y 122 Y 122 1.601 8 0.056 0.056 1.895 72.857 24.286 LGA V 123 V 123 1.988 3 0.041 0.041 3.026 65.119 37.211 LGA R 124 R 124 3.455 7 0.502 0.502 5.598 43.333 15.758 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 93 372 372 100.00 718 372 51.81 106 SUMMARY(RMSD_GDC): 14.991 14.906 14.906 14.547 7.197 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 93 106 4.0 20 2.46 19.575 16.450 0.781 LGA_LOCAL RMSD: 2.460 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.384 Number of assigned atoms: 93 Std_ASGN_ATOMS RMSD: 14.991 Standard rmsd on all 93 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.209308 * X + -0.962997 * Y + 0.169784 * Z + 4.835713 Y_new = 0.934893 * X + -0.146176 * Y + 0.323432 * Z + 31.310863 Z_new = -0.286646 * X + 0.226427 * Y + 0.930895 * Z + 8.333442 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.791049 0.290724 0.238602 [DEG: 102.6196 16.6573 13.6709 ] ZXZ: 2.658190 0.373942 -0.902234 [DEG: 152.3030 21.4253 -51.6942 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0612AL396_1-D1 REMARK 2: T0612-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0612AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 93 106 4.0 20 2.46 16.450 14.99 REMARK ---------------------------------------------------------- MOLECULE T0612AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kkc_A ATOM 21 N HIS 20 17.772 31.289 0.927 1.00 0.00 N ATOM 22 CA HIS 20 19.065 30.798 1.388 1.00 0.00 C ATOM 23 C HIS 20 20.027 30.606 0.220 1.00 0.00 C ATOM 24 O HIS 20 19.778 29.801 -0.678 1.00 0.00 O ATOM 25 N THR 21 21.127 31.351 0.238 1.00 0.00 N ATOM 26 CA THR 21 22.129 31.262 -0.817 1.00 0.00 C ATOM 27 C THR 21 23.224 30.268 -0.446 1.00 0.00 C ATOM 28 O THR 21 23.789 30.333 0.646 1.00 0.00 O ATOM 29 N GLY 22 23.519 29.351 -1.361 1.00 0.00 N ATOM 30 CA GLY 22 24.551 28.346 -1.130 1.00 0.00 C ATOM 31 C GLY 22 25.726 28.537 -2.082 1.00 0.00 C ATOM 32 O GLY 22 25.544 28.906 -3.243 1.00 0.00 O ATOM 33 N GLY 23 26.931 28.285 -1.584 1.00 0.00 N ATOM 34 CA GLY 23 28.138 28.432 -2.389 1.00 0.00 C ATOM 35 C GLY 23 28.911 27.119 -2.458 1.00 0.00 C ATOM 36 O GLY 23 29.374 26.603 -1.439 1.00 0.00 O ATOM 37 N ILE 24 29.047 26.583 -3.665 1.00 0.00 N ATOM 38 CA ILE 24 29.765 25.329 -3.870 1.00 0.00 C ATOM 39 C ILE 24 31.270 25.568 -3.933 1.00 0.00 C ATOM 40 O ILE 24 31.736 26.490 -4.604 1.00 0.00 O ATOM 41 N MET 25 32.026 24.730 -3.232 1.00 0.00 N ATOM 42 CA MET 25 33.481 24.848 -3.209 1.00 0.00 C ATOM 43 C MET 25 34.139 23.555 -3.678 1.00 0.00 C ATOM 44 O MET 25 33.866 22.479 -3.147 1.00 0.00 O ATOM 45 N ILE 26 35.010 23.669 -4.677 1.00 0.00 N ATOM 46 CA ILE 26 35.695 22.501 -5.199 1.00 0.00 C ATOM 47 C ILE 26 36.973 22.193 -4.444 1.00 0.00 C ATOM 48 O ILE 26 36.949 21.961 -3.235 1.00 0.00 O ATOM 49 N SER 27 38.094 22.189 -5.158 1.00 0.00 N ATOM 50 CA SER 27 39.389 21.906 -4.550 1.00 0.00 C ATOM 51 C SER 27 40.116 23.198 -4.194 1.00 0.00 C ATOM 52 O SER 27 40.815 23.271 -3.185 1.00 0.00 O ATOM 53 N SER 28 39.947 24.217 -5.032 1.00 0.00 N ATOM 54 CA SER 28 40.588 25.507 -4.806 1.00 0.00 C ATOM 55 C SER 28 39.636 26.472 -4.106 1.00 0.00 C ATOM 56 O SER 28 39.797 27.689 -4.192 1.00 0.00 O ATOM 57 N THR 29 38.644 25.920 -3.415 1.00 0.00 N ATOM 58 CA THR 29 37.665 26.732 -2.701 1.00 0.00 C ATOM 59 C THR 29 37.061 27.789 -3.622 1.00 0.00 C ATOM 60 O THR 29 36.721 28.887 -3.183 1.00 0.00 O ATOM 61 N GLY 30 36.934 27.449 -4.900 1.00 0.00 N ATOM 62 CA GLY 30 36.370 28.367 -5.882 1.00 0.00 C ATOM 63 C GLY 30 34.897 28.063 -6.137 1.00 0.00 C ATOM 64 O GLY 30 34.499 26.901 -6.216 1.00 0.00 O ATOM 65 N GLU 31 34.094 29.114 -6.263 1.00 0.00 N ATOM 66 CA GLU 31 32.666 28.958 -6.511 1.00 0.00 C ATOM 67 C GLU 31 32.412 28.095 -7.741 1.00 0.00 C ATOM 68 O GLU 31 32.639 28.527 -8.872 1.00 0.00 O ATOM 69 N VAL 32 31.943 26.873 -7.515 1.00 0.00 N ATOM 70 CA VAL 32 31.661 25.948 -8.606 1.00 0.00 C ATOM 71 C VAL 32 30.259 26.176 -9.164 1.00 0.00 C ATOM 72 O VAL 32 30.080 26.337 -10.371 1.00 0.00 O ATOM 73 N ARG 33 29.270 26.189 -8.276 1.00 0.00 N ATOM 74 CA ARG 33 27.884 26.397 -8.681 1.00 0.00 C ATOM 75 C ARG 33 27.147 27.271 -7.671 1.00 0.00 C ATOM 76 O ARG 33 27.445 27.244 -6.476 1.00 0.00 O ATOM 77 N VAL 34 26.184 28.045 -8.159 1.00 0.00 N ATOM 78 CA VAL 34 25.404 28.928 -7.299 1.00 0.00 C ATOM 79 C VAL 34 23.909 28.698 -7.487 1.00 0.00 C ATOM 80 O VAL 34 23.406 28.707 -8.611 1.00 0.00 O ATOM 81 N ASP 35 23.203 28.493 -6.380 1.00 0.00 N ATOM 82 CA ASP 35 21.765 28.262 -6.423 1.00 0.00 C ATOM 83 C ASP 35 21.099 28.733 -5.133 1.00 0.00 C ATOM 84 O ASP 35 21.726 28.758 -4.073 1.00 0.00 O ATOM 85 N ASN 36 19.828 29.105 -5.231 1.00 0.00 N ATOM 86 CA ASN 36 19.078 29.576 -4.072 1.00 0.00 C ATOM 87 C ASN 36 17.685 28.955 -4.036 1.00 0.00 C ATOM 88 O ASN 36 17.173 28.495 -5.057 1.00 0.00 O ATOM 89 N GLY 37 17.077 28.947 -2.856 1.00 0.00 N ATOM 90 CA GLY 37 15.743 28.381 -2.685 1.00 0.00 C ATOM 91 C GLY 37 14.953 29.155 -1.634 1.00 0.00 C ATOM 92 O GLY 37 15.515 29.635 -0.649 1.00 0.00 O ATOM 93 N SER 38 13.647 29.271 -1.850 1.00 0.00 N ATOM 94 CA SER 38 12.781 29.990 -0.924 1.00 0.00 C ATOM 95 C SER 38 12.466 29.136 0.300 1.00 0.00 C ATOM 96 O SER 38 12.008 28.000 0.178 1.00 0.00 O ATOM 97 N PHE 39 12.717 29.692 1.482 1.00 0.00 N ATOM 98 CA PHE 39 12.462 28.982 2.729 1.00 0.00 C ATOM 99 C PHE 39 11.373 29.679 3.539 1.00 0.00 C ATOM 100 O PHE 39 11.074 30.853 3.317 1.00 0.00 O ATOM 101 N HIS 40 10.782 28.947 4.478 1.00 0.00 N ATOM 102 CA HIS 40 9.724 29.493 5.320 1.00 0.00 C ATOM 103 C HIS 40 10.283 29.957 6.662 1.00 0.00 C ATOM 104 O HIS 40 11.161 29.312 7.237 1.00 0.00 O ATOM 105 N SER 41 9.769 31.079 7.156 1.00 0.00 N ATOM 106 CA SER 41 10.218 31.629 8.428 1.00 0.00 C ATOM 107 C SER 41 9.806 30.727 9.588 1.00 0.00 C ATOM 108 O SER 41 10.301 30.870 10.706 1.00 0.00 O ATOM 109 N ASP 42 8.898 29.797 9.311 1.00 0.00 N ATOM 110 CA ASP 42 8.416 28.872 10.331 1.00 0.00 C ATOM 111 C ASP 42 9.564 28.046 10.902 1.00 0.00 C ATOM 112 O ASP 42 10.631 27.920 10.300 1.00 0.00 O ATOM 113 N VAL 43 9.342 27.470 12.093 1.00 0.00 N ATOM 114 CA VAL 43 10.347 26.645 12.772 1.00 0.00 C ATOM 115 C VAL 43 10.582 25.316 12.061 1.00 0.00 C ATOM 116 O VAL 43 11.723 24.912 11.845 1.00 0.00 O ATOM 117 N ASP 44 9.494 24.641 11.703 1.00 0.00 N ATOM 118 CA ASP 44 9.583 23.358 11.016 1.00 0.00 C ATOM 119 C ASP 44 8.389 23.152 10.089 1.00 0.00 C ATOM 120 O ASP 44 7.309 23.704 10.296 1.00 0.00 O ATOM 121 N VAL 45 8.588 22.338 9.042 1.00 0.00 N ATOM 122 CA VAL 45 7.539 22.039 8.061 1.00 0.00 C ATOM 123 C VAL 45 6.427 21.175 8.647 1.00 0.00 C ATOM 124 O VAL 45 5.245 21.479 8.489 1.00 0.00 O ATOM 125 N SER 46 6.814 20.099 9.323 1.00 0.00 N ATOM 126 CA SER 46 5.849 19.191 9.932 1.00 0.00 C ATOM 127 C SER 46 5.991 19.184 11.451 1.00 0.00 C ATOM 128 O SER 46 6.994 19.648 11.993 1.00 0.00 O ATOM 133 N VAL 48 4.363 16.261 13.286 1.00 0.00 N ATOM 134 CA VAL 48 4.284 14.847 13.633 1.00 0.00 C ATOM 135 C VAL 48 5.417 14.061 12.979 1.00 0.00 C ATOM 136 O VAL 48 6.116 13.294 13.639 1.00 0.00 O ATOM 137 N THR 49 5.590 14.259 11.676 1.00 0.00 N ATOM 138 CA THR 49 6.638 13.571 10.932 1.00 0.00 C ATOM 139 C THR 49 8.016 13.894 11.497 1.00 0.00 C ATOM 140 O THR 49 8.860 13.012 11.644 1.00 0.00 O ATOM 141 N THR 50 8.236 15.167 11.813 1.00 0.00 N ATOM 142 CA THR 50 9.513 15.607 12.364 1.00 0.00 C ATOM 143 C THR 50 9.916 14.755 13.562 1.00 0.00 C ATOM 144 O THR 50 9.205 14.701 14.565 1.00 0.00 O ATOM 145 N GLN 51 11.061 14.090 13.451 1.00 0.00 N ATOM 146 CA GLN 51 11.560 13.241 14.526 1.00 0.00 C ATOM 147 C GLN 51 12.800 13.847 15.173 1.00 0.00 C ATOM 148 O GLN 51 13.790 13.155 15.409 1.00 0.00 O ATOM 149 N ALA 52 12.740 15.145 15.457 1.00 0.00 N ATOM 150 CA ALA 52 13.866 15.823 16.075 1.00 0.00 C ATOM 151 C ALA 52 14.283 17.064 15.313 1.00 0.00 C ATOM 152 O ALA 52 14.001 18.191 15.720 1.00 0.00 O ATOM 153 N GLU 53 14.972 16.865 14.180 1.00 0.00 N ATOM 154 CA GLU 53 15.446 17.967 13.337 1.00 0.00 C ATOM 155 C GLU 53 14.302 18.687 12.629 1.00 0.00 C ATOM 156 O GLU 53 13.131 18.432 12.904 1.00 0.00 O ATOM 161 N GLY 55 14.863 22.326 10.327 1.00 0.00 N ATOM 162 CA GLY 55 15.490 23.279 9.404 1.00 0.00 C ATOM 163 C GLY 55 16.742 22.710 8.745 1.00 0.00 C ATOM 164 O GLY 55 16.907 22.796 7.527 1.00 0.00 O ATOM 165 N PHE 56 17.619 22.128 9.555 1.00 0.00 N ATOM 166 CA PHE 56 18.856 21.545 9.049 1.00 0.00 C ATOM 167 C PHE 56 18.564 20.448 8.030 1.00 0.00 C ATOM 168 O PHE 56 19.042 20.496 6.898 1.00 0.00 O ATOM 169 N LEU 57 17.776 19.459 8.442 1.00 0.00 N ATOM 170 CA LEU 57 17.422 18.349 7.566 1.00 0.00 C ATOM 171 C LEU 57 16.711 18.851 6.313 1.00 0.00 C ATOM 172 O LEU 57 16.791 18.233 5.250 1.00 0.00 O ATOM 173 N ARG 58 16.014 19.975 6.444 1.00 0.00 N ATOM 174 CA ARG 58 15.287 20.560 5.324 1.00 0.00 C ATOM 175 C ARG 58 16.245 21.223 4.340 1.00 0.00 C ATOM 176 O ARG 58 16.212 20.944 3.141 1.00 0.00 O ATOM 177 N ALA 59 17.099 22.102 4.854 1.00 0.00 N ATOM 178 CA ALA 59 18.067 22.806 4.022 1.00 0.00 C ATOM 179 C ALA 59 19.027 21.825 3.355 1.00 0.00 C ATOM 180 O ALA 59 19.242 21.877 2.143 1.00 0.00 O ATOM 181 N ARG 60 19.600 20.931 4.154 1.00 0.00 N ATOM 182 CA ARG 60 20.536 19.937 3.641 1.00 0.00 C ATOM 183 C ARG 60 19.888 19.091 2.549 1.00 0.00 C ATOM 184 O ARG 60 20.577 18.503 1.716 1.00 0.00 O ATOM 185 N GLY 61 18.560 19.038 2.559 1.00 0.00 N ATOM 186 CA GLY 61 17.819 18.263 1.571 1.00 0.00 C ATOM 187 C GLY 61 17.824 18.966 0.216 1.00 0.00 C ATOM 188 O GLY 61 18.027 18.336 -0.822 1.00 0.00 O ATOM 189 N THR 62 17.598 20.275 0.235 1.00 0.00 N ATOM 190 CA THR 62 17.575 21.064 -0.991 1.00 0.00 C ATOM 191 C THR 62 18.968 21.154 -1.607 1.00 0.00 C ATOM 192 O THR 62 19.152 20.884 -2.794 1.00 0.00 O ATOM 193 N ILE 63 19.946 21.535 -0.792 1.00 0.00 N ATOM 194 CA ILE 63 21.322 21.660 -1.255 1.00 0.00 C ATOM 195 C ILE 63 21.762 20.413 -2.016 1.00 0.00 C ATOM 196 O ILE 63 22.564 20.492 -2.945 1.00 0.00 O ATOM 197 N ILE 64 21.227 19.264 -1.617 1.00 0.00 N ATOM 198 CA ILE 64 21.561 18.001 -2.263 1.00 0.00 C ATOM 199 C ILE 64 20.984 17.936 -3.672 1.00 0.00 C ATOM 200 O ILE 64 21.700 17.665 -4.635 1.00 0.00 O ATOM 201 N SER 65 19.683 18.185 -3.786 1.00 0.00 N ATOM 202 CA SER 65 19.008 18.155 -5.079 1.00 0.00 C ATOM 203 C SER 65 19.433 19.334 -5.947 1.00 0.00 C ATOM 204 O SER 65 19.319 19.289 -7.173 1.00 0.00 O ATOM 205 N LYS 66 19.924 20.388 -5.305 1.00 0.00 N ATOM 206 CA LYS 66 20.367 21.581 -6.019 1.00 0.00 C ATOM 207 C LYS 66 21.814 21.434 -6.478 1.00 0.00 C ATOM 208 O LYS 66 22.193 21.930 -7.539 1.00 0.00 O ATOM 209 N SER 67 22.618 20.748 -5.673 1.00 0.00 N ATOM 210 CA SER 67 24.024 20.535 -5.997 1.00 0.00 C ATOM 211 C SER 67 24.319 19.050 -6.188 1.00 0.00 C ATOM 212 O SER 67 24.988 18.414 -5.373 1.00 0.00 O ATOM 213 N PRO 68 23.807 18.482 -7.290 1.00 0.00 N ATOM 214 CA PRO 68 24.002 17.067 -7.615 1.00 0.00 C ATOM 215 C PRO 68 25.443 16.753 -8.004 1.00 0.00 C ATOM 216 O PRO 68 25.822 15.590 -8.133 1.00 0.00 O ATOM 217 N LYS 69 26.242 17.800 -8.188 1.00 0.00 N ATOM 218 CA LYS 69 27.642 17.636 -8.559 1.00 0.00 C ATOM 219 C LYS 69 28.378 16.760 -7.552 1.00 0.00 C ATOM 220 O LYS 69 29.386 16.132 -7.880 1.00 0.00 O ATOM 221 N ASP 70 27.869 16.720 -6.325 1.00 0.00 N ATOM 222 CA ASP 70 28.479 15.921 -5.269 1.00 0.00 C ATOM 223 C ASP 70 27.479 14.922 -4.696 1.00 0.00 C ATOM 224 O ASP 70 26.356 14.802 -5.186 1.00 0.00 O ATOM 225 N GLN 71 27.894 14.210 -3.654 1.00 0.00 N ATOM 226 CA GLN 71 27.033 13.222 -3.013 1.00 0.00 C ATOM 227 C GLN 71 25.750 13.869 -2.501 1.00 0.00 C ATOM 228 O GLN 71 25.682 15.077 -2.276 1.00 0.00 O ATOM 229 N ARG 72 24.707 13.047 -2.314 1.00 0.00 N ATOM 230 CA ARG 72 23.406 13.517 -1.827 1.00 0.00 C ATOM 231 C ARG 72 23.455 13.947 -0.365 1.00 0.00 C ATOM 232 O ARG 72 22.984 15.027 -0.009 1.00 0.00 O ATOM 233 N LEU 73 24.030 13.096 0.480 1.00 0.00 N ATOM 234 CA LEU 73 24.130 13.408 1.893 1.00 0.00 C ATOM 235 C LEU 73 25.559 13.349 2.399 1.00 0.00 C ATOM 236 O LEU 73 25.795 13.293 3.606 1.00 0.00 O ATOM 237 N GLN 74 26.514 13.360 1.476 1.00 0.00 N ATOM 238 CA GLN 74 27.914 13.305 1.855 1.00 0.00 C ATOM 239 C GLN 74 28.592 14.658 1.769 1.00 0.00 C ATOM 240 O GLN 74 29.625 14.803 1.116 1.00 0.00 O ATOM 241 N TYR 75 28.008 15.653 2.429 1.00 0.00 N ATOM 242 CA TYR 75 28.561 17.003 2.423 1.00 0.00 C ATOM 243 C TYR 75 28.253 17.723 3.733 1.00 0.00 C ATOM 244 O TYR 75 27.328 17.351 4.454 1.00 0.00 O ATOM 245 N LYS 76 29.035 18.755 4.030 1.00 0.00 N ATOM 246 CA LYS 76 28.846 19.526 5.253 1.00 0.00 C ATOM 247 C LYS 76 28.765 21.018 4.949 1.00 0.00 C ATOM 248 O LYS 76 29.642 21.576 4.291 1.00 0.00 O ATOM 249 N PHE 77 27.705 21.658 5.432 1.00 0.00 N ATOM 250 CA PHE 77 27.509 23.086 5.212 1.00 0.00 C ATOM 251 C PHE 77 28.177 23.907 6.310 1.00 0.00 C ATOM 252 O PHE 77 27.870 23.747 7.492 1.00 0.00 O ATOM 253 N THR 78 29.091 24.786 5.912 1.00 0.00 N ATOM 254 CA THR 78 29.803 25.633 6.863 1.00 0.00 C ATOM 255 C THR 78 29.286 27.067 6.806 1.00 0.00 C ATOM 256 O THR 78 29.142 27.643 5.728 1.00 0.00 O ATOM 257 N TRP 79 29.008 27.637 7.974 1.00 0.00 N ATOM 258 CA TRP 79 28.505 29.003 8.056 1.00 0.00 C ATOM 259 C TRP 79 29.494 29.905 8.788 1.00 0.00 C ATOM 260 O TRP 79 30.164 29.476 9.727 1.00 0.00 O ATOM 261 N TYR 80 29.577 31.158 8.353 1.00 0.00 N ATOM 262 CA TYR 80 30.483 32.121 8.966 1.00 0.00 C ATOM 263 C TYR 80 29.938 32.604 10.305 1.00 0.00 C ATOM 264 O TYR 80 28.734 32.810 10.460 1.00 0.00 O ATOM 265 N ASP 81 30.832 32.782 11.273 1.00 0.00 N ATOM 266 CA ASP 81 30.441 33.241 12.600 1.00 0.00 C ATOM 267 C ASP 81 30.824 34.702 12.811 1.00 0.00 C ATOM 268 O ASP 81 31.298 35.367 11.889 1.00 0.00 O ATOM 269 N ILE 82 30.616 35.195 14.028 1.00 0.00 N ATOM 270 CA ILE 82 30.939 36.578 14.356 1.00 0.00 C ATOM 271 C ILE 82 32.389 36.897 14.001 1.00 0.00 C ATOM 272 O ILE 82 32.722 38.035 13.671 1.00 0.00 O ATOM 273 N ASN 83 33.246 35.884 14.071 1.00 0.00 N ATOM 274 CA ASN 83 34.660 36.056 13.759 1.00 0.00 C ATOM 275 C ASN 83 34.908 35.908 12.261 1.00 0.00 C ATOM 276 O ASN 83 35.874 36.450 11.725 1.00 0.00 O ATOM 277 N GLY 84 34.028 35.171 11.591 1.00 0.00 N ATOM 278 CA GLY 84 34.169 34.965 10.161 1.00 0.00 C ATOM 279 C GLY 84 34.563 33.543 9.816 1.00 0.00 C ATOM 280 O GLY 84 34.300 33.069 8.710 1.00 0.00 O ATOM 281 N LYS 95 35.198 32.861 10.763 1.00 0.00 N ATOM 282 CA LYS 95 35.631 31.484 10.554 1.00 0.00 C ATOM 283 C LYS 95 34.463 30.609 10.108 1.00 0.00 C ATOM 284 O LYS 95 33.299 30.965 10.295 1.00 0.00 O ATOM 285 N SER 96 34.782 29.464 9.515 1.00 0.00 N ATOM 286 CA SER 96 33.759 28.538 9.039 1.00 0.00 C ATOM 287 C SER 96 33.409 27.515 10.115 1.00 0.00 C ATOM 288 O SER 96 34.293 26.938 10.749 1.00 0.00 O ATOM 289 N LEU 97 32.114 27.293 10.315 1.00 0.00 N ATOM 290 CA LEU 97 31.647 26.336 11.310 1.00 0.00 C ATOM 291 C LEU 97 30.652 25.353 10.704 1.00 0.00 C ATOM 292 O LEU 97 29.478 25.677 10.520 1.00 0.00 O ATOM 293 N LYS 98 31.128 24.151 10.396 1.00 0.00 N ATOM 294 CA LYS 98 30.279 23.120 9.813 1.00 0.00 C ATOM 295 C LYS 98 29.089 22.814 10.716 1.00 0.00 C ATOM 296 O LYS 98 29.233 22.162 11.750 1.00 0.00 O ATOM 297 N LEU 99 27.913 23.286 10.317 1.00 0.00 N ATOM 298 CA LEU 99 26.697 23.064 11.090 1.00 0.00 C ATOM 299 C LEU 99 25.944 21.839 10.581 1.00 0.00 C ATOM 300 O LEU 99 26.034 21.487 9.406 1.00 0.00 O ATOM 301 N HIS 100 25.203 21.192 11.476 1.00 0.00 N ATOM 302 CA HIS 100 24.439 20.003 11.120 1.00 0.00 C ATOM 303 C HIS 100 23.349 19.728 12.152 1.00 0.00 C ATOM 304 O HIS 100 22.980 18.578 12.390 1.00 0.00 O ATOM 305 N GLY 101 22.840 20.792 12.764 1.00 0.00 N ATOM 306 CA GLY 101 21.796 20.667 13.773 1.00 0.00 C ATOM 307 C GLY 101 20.888 21.893 13.771 1.00 0.00 C ATOM 308 O GLY 101 21.349 23.021 13.595 1.00 0.00 O ATOM 309 N LYS 102 19.594 21.663 13.968 1.00 0.00 N ATOM 310 CA LYS 102 18.619 22.748 13.990 1.00 0.00 C ATOM 311 C LYS 102 19.047 23.844 14.961 1.00 0.00 C ATOM 312 O LYS 102 18.966 25.030 14.646 1.00 0.00 O ATOM 313 N GLN 103 19.502 23.436 16.142 1.00 0.00 N ATOM 314 CA GLN 103 19.940 24.384 17.159 1.00 0.00 C ATOM 315 C GLN 103 21.019 25.313 16.609 1.00 0.00 C ATOM 316 O GLN 103 21.168 26.446 17.064 1.00 0.00 O ATOM 317 N GLN 104 21.769 24.822 15.627 1.00 0.00 N ATOM 318 CA GLN 104 22.835 25.607 15.015 1.00 0.00 C ATOM 319 C GLN 104 22.272 26.578 13.982 1.00 0.00 C ATOM 320 O GLN 104 22.817 27.663 13.771 1.00 0.00 O ATOM 321 N MET 105 21.178 26.182 13.341 1.00 0.00 N ATOM 322 CA MET 105 20.539 27.017 12.329 1.00 0.00 C ATOM 323 C MET 105 19.930 28.265 12.959 1.00 0.00 C ATOM 324 O MET 105 20.184 29.385 12.513 1.00 0.00 O ATOM 325 N GLN 106 19.126 28.065 13.998 1.00 0.00 N ATOM 326 CA GLN 106 18.481 29.174 14.690 1.00 0.00 C ATOM 327 C GLN 106 19.498 30.236 15.094 1.00 0.00 C ATOM 328 O GLN 106 19.168 31.417 15.198 1.00 0.00 O ATOM 329 N VAL 107 20.735 29.808 15.319 1.00 0.00 N ATOM 330 CA VAL 107 21.801 30.724 15.709 1.00 0.00 C ATOM 331 C VAL 107 22.405 31.408 14.487 1.00 0.00 C ATOM 332 O VAL 107 22.707 32.601 14.517 1.00 0.00 O ATOM 333 N THR 108 22.581 30.644 13.414 1.00 0.00 N ATOM 334 CA THR 108 23.147 31.177 12.182 1.00 0.00 C ATOM 335 C THR 108 22.320 32.345 11.657 1.00 0.00 C ATOM 336 O THR 108 22.865 33.348 11.195 1.00 0.00 O ATOM 337 N ALA 109 21.000 32.209 11.730 1.00 0.00 N ATOM 338 CA ALA 109 20.097 33.254 11.262 1.00 0.00 C ATOM 339 C ALA 109 20.176 34.484 12.162 1.00 0.00 C ATOM 340 O ALA 109 19.837 35.592 11.747 1.00 0.00 O ATOM 341 N LEU 110 20.623 34.280 13.397 1.00 0.00 N ATOM 342 CA LEU 110 20.743 35.371 14.357 1.00 0.00 C ATOM 343 C LEU 110 21.804 36.373 13.912 1.00 0.00 C ATOM 344 O LEU 110 21.769 37.543 14.295 1.00 0.00 O ATOM 345 N SER 111 22.746 35.905 13.101 1.00 0.00 N ATOM 346 CA SER 111 23.819 36.758 12.605 1.00 0.00 C ATOM 347 C SER 111 23.317 37.676 11.493 1.00 0.00 C ATOM 348 O SER 111 23.485 38.894 11.555 1.00 0.00 O ATOM 349 N PRO 112 22.698 37.081 10.479 1.00 0.00 N ATOM 350 CA PRO 112 22.167 37.844 9.355 1.00 0.00 C ATOM 351 C PRO 112 20.930 38.634 9.761 1.00 0.00 C ATOM 352 O PRO 112 19.982 38.082 10.320 1.00 0.00 O ATOM 353 N ASN 113 20.943 39.932 9.476 1.00 0.00 N ATOM 354 CA ASN 113 19.821 40.801 9.810 1.00 0.00 C ATOM 355 C ASN 113 18.803 40.835 8.675 1.00 0.00 C ATOM 356 O ASN 113 17.614 41.058 8.903 1.00 0.00 O ATOM 357 N ALA 114 19.276 40.611 7.454 1.00 0.00 N ATOM 358 CA ALA 114 18.405 40.612 6.285 1.00 0.00 C ATOM 359 C ALA 114 17.670 39.282 6.151 1.00 0.00 C ATOM 360 O ALA 114 17.731 38.437 7.045 1.00 0.00 O ATOM 361 N THR 115 16.978 39.104 5.032 1.00 0.00 N ATOM 362 CA THR 115 16.232 37.876 4.782 1.00 0.00 C ATOM 363 C THR 115 17.017 36.939 3.871 1.00 0.00 C ATOM 364 O THR 115 16.438 36.105 3.173 1.00 0.00 O ATOM 365 N ALA 116 18.338 37.082 3.880 1.00 0.00 N ATOM 366 CA ALA 116 19.202 36.248 3.054 1.00 0.00 C ATOM 367 C ALA 116 20.205 35.480 3.908 1.00 0.00 C ATOM 368 O ALA 116 21.030 36.075 4.601 1.00 0.00 O ATOM 369 N VAL 117 20.130 34.154 3.850 1.00 0.00 N ATOM 370 CA VAL 117 21.032 33.304 4.618 1.00 0.00 C ATOM 371 C VAL 117 22.097 32.686 3.716 1.00 0.00 C ATOM 372 O VAL 117 21.806 31.801 2.911 1.00 0.00 O ATOM 373 N ARG 118 23.330 33.160 3.857 1.00 0.00 N ATOM 374 CA ARG 118 24.438 32.656 3.054 1.00 0.00 C ATOM 375 C ARG 118 25.175 31.539 3.786 1.00 0.00 C ATOM 376 O ARG 118 25.372 31.603 5.000 1.00 0.00 O ATOM 377 N CYS 119 25.581 30.516 3.041 1.00 0.00 N ATOM 378 CA CYS 119 26.296 29.386 3.618 1.00 0.00 C ATOM 379 C CYS 119 27.292 28.799 2.623 1.00 0.00 C ATOM 380 O CYS 119 27.114 28.913 1.410 1.00 0.00 O ATOM 381 N GLU 120 28.339 28.168 3.144 1.00 0.00 N ATOM 382 CA GLU 120 29.362 27.562 2.301 1.00 0.00 C ATOM 383 C GLU 120 29.185 26.048 2.230 1.00 0.00 C ATOM 384 O GLU 120 29.357 25.345 3.226 1.00 0.00 O ATOM 385 N LEU 121 28.840 25.555 1.045 1.00 0.00 N ATOM 386 CA LEU 121 28.641 24.125 0.842 1.00 0.00 C ATOM 387 C LEU 121 29.944 23.440 0.448 1.00 0.00 C ATOM 388 O LEU 121 30.686 23.931 -0.402 1.00 0.00 O ATOM 389 N TYR 122 30.216 22.298 1.072 1.00 0.00 N ATOM 390 CA TYR 122 31.429 21.540 0.785 1.00 0.00 C ATOM 391 C TYR 122 31.158 20.039 0.842 1.00 0.00 C ATOM 392 O TYR 122 30.626 19.534 1.829 1.00 0.00 O ATOM 393 N VAL 123 31.531 19.335 -0.221 1.00 0.00 N ATOM 394 CA VAL 123 31.329 17.893 -0.290 1.00 0.00 C ATOM 395 C VAL 123 32.409 17.154 0.495 1.00 0.00 C ATOM 396 O VAL 123 33.596 17.462 0.383 1.00 0.00 O ATOM 397 N ARG 124 31.989 16.176 1.292 1.00 0.00 N ATOM 398 CA ARG 124 32.918 15.391 2.096 1.00 0.00 C ATOM 399 C ARG 124 33.786 14.502 1.213 1.00 0.00 C ATOM 400 O ARG 124 34.991 14.721 1.087 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 372 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.34 36.8 174 84.1 207 ARMSMC SECONDARY STRUCTURE . . 81.34 39.1 110 94.8 116 ARMSMC SURFACE . . . . . . . . 85.50 35.0 120 79.5 151 ARMSMC BURIED . . . . . . . . 84.97 40.7 54 96.4 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 79 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 49 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 58 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 9 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 14.99 (Number of atoms: 93) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 14.99 93 87.7 106 CRMSCA CRN = ALL/NP . . . . . 0.1612 CRMSCA SECONDARY STRUCTURE . . 13.19 58 100.0 58 CRMSCA SURFACE . . . . . . . . 15.89 66 84.6 78 CRMSCA BURIED . . . . . . . . 12.51 27 96.4 28 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 14.91 372 71.4 521 CRMSMC SECONDARY STRUCTURE . . 13.22 232 80.6 288 CRMSMC SURFACE . . . . . . . . 15.79 264 69.1 382 CRMSMC BURIED . . . . . . . . 12.48 108 77.7 139 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 392 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 334 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 251 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 289 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 103 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 14.91 372 45.6 816 CRMSALL SECONDARY STRUCTURE . . 13.22 232 48.0 483 CRMSALL SURFACE . . . . . . . . 15.79 264 43.9 601 CRMSALL BURIED . . . . . . . . 12.48 108 50.2 215 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.718 1.000 0.500 93 87.7 106 ERRCA SECONDARY STRUCTURE . . 12.028 1.000 0.500 58 100.0 58 ERRCA SURFACE . . . . . . . . 14.796 1.000 0.500 66 84.6 78 ERRCA BURIED . . . . . . . . 11.085 1.000 0.500 27 96.4 28 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.673 1.000 0.500 372 71.4 521 ERRMC SECONDARY STRUCTURE . . 12.083 1.000 0.500 232 80.6 288 ERRMC SURFACE . . . . . . . . 14.713 1.000 0.500 264 69.1 382 ERRMC BURIED . . . . . . . . 11.132 1.000 0.500 108 77.7 139 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 392 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 334 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 251 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 289 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 103 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.673 1.000 0.500 372 45.6 816 ERRALL SECONDARY STRUCTURE . . 12.083 1.000 0.500 232 48.0 483 ERRALL SURFACE . . . . . . . . 14.713 1.000 0.500 264 43.9 601 ERRALL BURIED . . . . . . . . 11.132 1.000 0.500 108 50.2 215 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 6 29 93 106 DISTCA CA (P) 0.00 0.94 0.94 5.66 27.36 106 DISTCA CA (RMS) 0.00 1.62 1.62 4.18 7.60 DISTCA ALL (N) 0 1 5 20 118 372 816 DISTALL ALL (P) 0.00 0.12 0.61 2.45 14.46 816 DISTALL ALL (RMS) 0.00 1.62 2.65 3.88 7.64 DISTALL END of the results output