####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 212), selected 53 , name T0611TS328_1-D1 # Molecule2: number of CA atoms 53 ( 429), selected 53 , name T0611-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0611TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 3 - 55 1.26 1.26 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 3 - 55 1.26 1.26 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 4 - 55 0.84 1.29 LCS_AVERAGE: 96.37 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 3 M 3 3 53 53 0 3 4 4 4 5 8 44 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 4 K 4 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 5 T 5 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 6 R 6 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 7 D 7 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 8 K 8 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 9 I 9 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 10 L 10 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 11 L 11 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 12 S 12 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 13 S 13 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 14 L 14 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 15 E 15 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 16 L 16 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 17 F 17 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 18 N 18 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 19 D 19 52 53 53 20 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 20 K 20 52 53 53 20 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT G 21 G 21 52 53 53 19 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 22 E 22 52 53 53 19 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 23 R 23 52 53 53 6 39 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 24 N 24 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 25 I 25 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 26 T 26 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 27 T 27 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 28 N 28 52 53 53 19 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT H 29 H 29 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 30 I 30 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 31 A 31 52 53 53 11 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 32 A 32 52 53 53 10 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT H 33 H 33 52 53 53 13 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 34 L 34 52 53 53 11 23 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 35 A 35 52 53 53 11 22 49 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 36 I 36 52 53 53 11 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 37 S 37 52 53 53 17 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT P 38 P 38 52 53 53 20 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT G 39 G 39 52 53 53 20 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 40 N 40 52 53 53 20 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 41 L 41 52 53 53 20 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 42 Y 42 52 53 53 10 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 43 Y 43 52 53 53 11 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT H 44 H 44 52 53 53 11 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 45 F 45 52 53 53 10 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 46 R 46 52 53 53 10 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 47 N 47 52 53 53 10 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 48 K 48 52 53 53 10 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 49 S 49 52 53 53 10 36 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 50 D 50 52 53 53 10 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 51 I 51 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 52 I 52 52 53 53 16 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 53 Y 53 52 53 53 20 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 54 E 54 52 53 53 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 55 I 55 52 53 53 10 25 49 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 LCS_AVERAGE LCS_A: 98.79 ( 96.37 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 21 41 50 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 53 GDT PERCENT_AT 39.62 77.36 94.34 98.11 98.11 98.11 98.11 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.61 0.79 0.84 0.84 0.84 0.84 0.84 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 GDT RMS_ALL_AT 1.35 1.34 1.30 1.29 1.29 1.29 1.29 1.29 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.26 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 3 M 3 7.184 4 0.639 0.639 8.597 16.429 8.214 LGA K 4 K 4 0.278 5 0.602 0.602 2.514 86.905 38.624 LGA T 5 T 5 0.151 3 0.029 0.029 0.151 100.000 57.143 LGA R 6 R 6 0.318 7 0.029 0.029 0.506 97.619 35.498 LGA D 7 D 7 0.408 4 0.015 0.015 0.514 97.619 48.810 LGA K 8 K 8 0.490 5 0.035 0.035 0.826 95.238 42.328 LGA I 9 I 9 0.752 4 0.016 0.016 0.771 90.476 45.238 LGA L 10 L 10 0.693 4 0.020 0.020 0.700 90.476 45.238 LGA L 11 L 11 0.498 4 0.046 0.046 0.663 92.857 46.429 LGA S 12 S 12 0.510 2 0.041 0.041 0.523 95.238 63.492 LGA S 13 S 13 0.289 2 0.015 0.015 0.397 100.000 66.667 LGA L 14 L 14 0.536 4 0.024 0.024 0.537 92.857 46.429 LGA E 15 E 15 0.445 5 0.018 0.018 0.515 97.619 43.386 LGA L 16 L 16 0.338 4 0.026 0.026 0.422 100.000 50.000 LGA F 17 F 17 0.429 7 0.061 0.061 0.453 100.000 36.364 LGA N 18 N 18 0.504 4 0.068 0.068 0.538 92.857 46.429 LGA D 19 D 19 0.919 4 0.023 0.023 1.203 85.952 42.976 LGA K 20 K 20 1.057 5 0.027 0.027 1.334 83.690 37.196 LGA G 21 G 21 0.996 0 0.081 0.081 1.019 88.214 88.214 LGA E 22 E 22 0.999 5 0.087 0.087 1.014 88.214 39.206 LGA R 23 R 23 1.491 7 0.067 0.067 1.491 81.429 29.610 LGA N 24 N 24 0.941 4 0.089 0.089 1.138 85.952 42.976 LGA I 25 I 25 0.335 4 0.041 0.041 0.665 95.238 47.619 LGA T 26 T 26 0.483 3 0.045 0.045 0.483 100.000 57.143 LGA T 27 T 27 0.351 3 0.024 0.024 0.484 100.000 57.143 LGA N 28 N 28 0.668 4 0.022 0.022 0.726 90.476 45.238 LGA H 29 H 29 0.408 6 0.024 0.024 0.481 100.000 40.000 LGA I 30 I 30 0.293 4 0.029 0.029 0.634 97.619 48.810 LGA A 31 A 31 0.699 1 0.024 0.024 1.026 88.214 70.571 LGA A 32 A 32 0.937 1 0.039 0.039 1.215 88.214 70.571 LGA H 33 H 33 0.648 6 0.127 0.127 1.504 86.071 34.429 LGA L 34 L 34 1.238 4 0.045 0.045 1.678 81.548 40.774 LGA A 35 A 35 1.724 1 0.049 0.049 1.724 77.143 61.714 LGA I 36 I 36 0.796 4 0.060 0.060 1.064 88.214 44.107 LGA S 37 S 37 0.695 2 0.029 0.029 0.695 92.857 61.905 LGA P 38 P 38 0.673 3 0.046 0.046 0.723 90.476 51.701 LGA G 39 G 39 0.740 0 0.045 0.045 0.761 90.476 90.476 LGA N 40 N 40 0.503 4 0.037 0.037 0.955 92.857 46.429 LGA L 41 L 41 0.529 4 0.038 0.038 0.943 90.476 45.238 LGA Y 42 Y 42 1.188 8 0.071 0.071 1.498 83.690 27.897 LGA Y 43 Y 43 1.453 8 0.030 0.030 1.630 79.286 26.429 LGA H 44 H 44 1.043 6 0.029 0.029 1.081 85.952 34.381 LGA F 45 F 45 0.855 7 0.121 0.121 0.957 90.476 32.900 LGA R 46 R 46 1.422 7 0.051 0.051 1.597 79.286 28.831 LGA N 47 N 47 1.254 4 0.052 0.052 1.254 83.690 41.845 LGA K 48 K 48 1.020 5 0.038 0.038 1.178 83.690 37.196 LGA S 49 S 49 1.190 2 0.066 0.066 1.190 85.952 57.302 LGA D 50 D 50 0.682 4 0.036 0.036 0.817 95.238 47.619 LGA I 51 I 51 0.431 4 0.059 0.059 0.640 97.619 48.810 LGA I 52 I 52 1.000 4 0.009 0.009 1.193 85.952 42.976 LGA Y 53 Y 53 0.648 8 0.022 0.022 0.738 90.476 30.159 LGA E 54 E 54 0.672 5 0.024 0.024 1.228 90.595 40.265 LGA I 55 I 55 1.612 4 0.180 0.180 2.129 70.952 35.476 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 429 212 49.42 53 SUMMARY(RMSD_GDC): 1.263 1.233 1.233 88.913 46.159 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 53 4.0 52 0.84 93.396 97.211 5.514 LGA_LOCAL RMSD: 0.843 Number of atoms: 52 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.293 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 1.263 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.494084 * X + 0.638949 * Y + 0.589598 * Z + -35.588726 Y_new = -0.199962 * X + -0.743489 * Y + 0.638153 * Z + 2.359733 Z_new = 0.846107 * X + 0.197404 * Y + 0.495111 * Z + -30.003820 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.757030 -1.008638 0.379390 [DEG: -157.9662 -57.7907 21.7375 ] ZXZ: 2.395722 1.052834 1.341588 [DEG: 137.2648 60.3229 76.8673 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0611TS328_1-D1 REMARK 2: T0611-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0611TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 53 4.0 52 0.84 97.211 1.26 REMARK ---------------------------------------------------------- MOLECULE T0611TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0611 REMARK MODEL 1 REMARK PARENT 3lhq_B ATOM 5 N MET 3 -6.421 -21.619 28.601 1.00 3.00 N ATOM 6 CA MET 3 -5.630 -20.541 27.992 1.00 3.00 C ATOM 7 C MET 3 -4.691 -21.001 26.871 1.00 3.00 C ATOM 8 O MET 3 -4.535 -20.330 25.823 1.00 3.00 O ATOM 9 N LYS 4 -4.044 -22.134 27.143 1.00 3.00 N ATOM 10 CA LYS 4 -3.067 -22.800 26.270 1.00 3.00 C ATOM 11 C LYS 4 -3.717 -23.217 24.963 1.00 3.00 C ATOM 12 O LYS 4 -3.140 -23.041 23.890 1.00 3.00 O ATOM 13 N THR 5 -4.919 -23.779 25.052 1.00 3.00 N ATOM 14 CA THR 5 -5.674 -24.108 23.848 1.00 3.00 C ATOM 15 C THR 5 -6.029 -22.825 23.078 1.00 3.00 C ATOM 16 O THR 5 -5.905 -22.752 21.867 1.00 3.00 O ATOM 17 N ARG 6 -6.508 -21.801 23.785 1.00 3.00 N ATOM 18 CA ARG 6 -6.858 -20.518 23.130 1.00 3.00 C ATOM 19 C ARG 6 -5.653 -19.997 22.370 1.00 3.00 C ATOM 20 O ARG 6 -5.777 -19.479 21.262 1.00 3.00 O ATOM 21 N ASP 7 -4.499 -20.082 23.005 1.00 3.00 N ATOM 22 CA ASP 7 -3.302 -19.542 22.384 1.00 3.00 C ATOM 23 C ASP 7 -2.816 -20.391 21.196 1.00 3.00 C ATOM 24 O ASP 7 -2.376 -19.834 20.203 1.00 3.00 O ATOM 25 N LYS 8 -2.913 -21.701 21.297 1.00 3.00 N ATOM 26 CA LYS 8 -2.655 -22.563 20.124 1.00 3.00 C ATOM 27 C LYS 8 -3.579 -22.208 18.960 1.00 3.00 C ATOM 28 O LYS 8 -3.105 -22.135 17.838 1.00 3.00 O ATOM 29 N ILE 9 -4.870 -21.978 19.238 1.00 3.00 N ATOM 30 CA ILE 9 -5.819 -21.532 18.243 1.00 3.00 C ATOM 31 C ILE 9 -5.354 -20.227 17.598 1.00 3.00 C ATOM 32 O ILE 9 -5.391 -20.083 16.360 1.00 3.00 O ATOM 33 N LEU 10 -4.953 -19.255 18.444 1.00 3.00 N ATOM 34 CA LEU 10 -4.510 -17.955 17.930 1.00 3.00 C ATOM 35 C LEU 10 -3.256 -18.137 17.053 1.00 3.00 C ATOM 36 O LEU 10 -3.232 -17.542 15.954 1.00 3.00 O ATOM 37 N LEU 11 -2.287 -18.958 17.476 1.00 3.00 N ATOM 38 CA LEU 11 -1.008 -19.164 16.697 1.00 3.00 C ATOM 39 C LEU 11 -1.292 -19.895 15.354 1.00 3.00 C ATOM 40 O LEU 11 -0.737 -19.582 14.305 1.00 3.00 O ATOM 41 N SER 12 -2.165 -20.882 15.388 1.00 3.00 N ATOM 42 CA SER 12 -2.565 -21.583 14.199 1.00 3.00 C ATOM 43 C SER 12 -3.355 -20.658 13.249 1.00 3.00 C ATOM 44 O SER 12 -3.092 -20.684 12.049 1.00 3.00 O ATOM 45 N SER 13 -4.250 -19.818 13.796 1.00 3.00 N ATOM 46 CA SER 13 -4.932 -18.818 12.973 1.00 3.00 C ATOM 47 C SER 13 -3.958 -17.900 12.273 1.00 3.00 C ATOM 48 O SER 13 -4.093 -17.642 11.066 1.00 3.00 O ATOM 49 N LEU 14 -2.935 -17.444 12.975 1.00 3.00 N ATOM 50 CA LEU 14 -1.930 -16.623 12.303 1.00 3.00 C ATOM 51 C LEU 14 -1.276 -17.329 11.156 1.00 3.00 C ATOM 52 O LEU 14 -1.087 -16.760 10.072 1.00 3.00 O ATOM 53 N GLU 15 -0.919 -18.591 11.359 1.00 3.00 N ATOM 54 CA GLU 15 -0.234 -19.334 10.294 1.00 3.00 C ATOM 55 C GLU 15 -1.189 -19.535 9.094 1.00 3.00 C ATOM 56 O GLU 15 -0.830 -19.281 7.965 1.00 3.00 O ATOM 57 N LEU 16 -2.446 -19.907 9.364 1.00 3.00 N ATOM 58 CA LEU 16 -3.462 -20.056 8.331 1.00 3.00 C ATOM 59 C LEU 16 -3.786 -18.766 7.601 1.00 3.00 C ATOM 60 O LEU 16 -3.831 -18.735 6.385 1.00 3.00 O ATOM 61 N PHE 17 -4.038 -17.705 8.352 1.00 3.00 N ATOM 62 CA PHE 17 -4.382 -16.433 7.732 1.00 3.00 C ATOM 63 C PHE 17 -3.241 -15.944 6.871 1.00 3.00 C ATOM 64 O PHE 17 -3.430 -15.369 5.772 1.00 3.00 O ATOM 65 N ASN 18 -2.005 -16.146 7.359 1.00 3.00 N ATOM 66 CA ASN 18 -0.857 -15.621 6.626 1.00 3.00 C ATOM 67 C ASN 18 -0.653 -16.336 5.297 1.00 3.00 C ATOM 68 O ASN 18 -0.154 -15.712 4.369 1.00 3.00 O ATOM 69 N ASP 19 -1.076 -17.600 5.202 1.00 3.00 N ATOM 70 CA ASP 19 -0.877 -18.440 4.008 1.00 3.00 C ATOM 71 C ASP 19 -2.077 -18.317 3.034 1.00 3.00 C ATOM 72 O ASP 19 -1.908 -18.145 1.833 1.00 3.00 O ATOM 73 N LYS 20 -3.280 -18.340 3.582 1.00 3.00 N ATOM 74 CA LYS 20 -4.535 -18.446 2.831 1.00 3.00 C ATOM 75 C LYS 20 -5.329 -17.160 2.752 1.00 3.00 C ATOM 76 O LYS 20 -6.269 -17.037 1.934 1.00 3.00 O ATOM 77 N GLY 21 -5.019 -16.212 3.626 1.00 3.00 N ATOM 78 CA GLY 21 -5.837 -14.988 3.741 1.00 3.00 C ATOM 79 C GLY 21 -6.968 -15.119 4.722 1.00 3.00 C ATOM 80 O GLY 21 -7.474 -16.232 4.968 1.00 3.00 O ATOM 81 N GLU 22 -7.414 -14.010 5.293 1.00 3.00 N ATOM 82 CA GLU 22 -8.515 -14.036 6.248 1.00 3.00 C ATOM 83 C GLU 22 -9.825 -14.432 5.563 1.00 3.00 C ATOM 84 O GLU 22 -10.541 -15.288 6.073 1.00 3.00 O ATOM 85 N ARG 23 -10.095 -13.937 4.366 1.00 3.00 N ATOM 86 CA ARG 23 -11.412 -14.126 3.767 1.00 3.00 C ATOM 87 C ARG 23 -11.700 -15.631 3.487 1.00 3.00 C ATOM 88 O ARG 23 -12.848 -16.083 3.696 1.00 3.00 O ATOM 89 N ASN 24 -10.690 -16.379 3.024 1.00 3.00 N ATOM 90 CA ASN 24 -10.782 -17.821 2.713 1.00 3.00 C ATOM 91 C ASN 24 -10.784 -18.753 3.891 1.00 3.00 C ATOM 92 O ASN 24 -11.082 -19.941 3.740 1.00 3.00 O ATOM 93 N ILE 25 -10.363 -18.254 5.035 1.00 3.00 N ATOM 94 CA ILE 25 -10.083 -19.120 6.167 1.00 3.00 C ATOM 95 C ILE 25 -11.244 -19.102 7.094 1.00 3.00 C ATOM 96 O ILE 25 -11.604 -18.057 7.630 1.00 3.00 O ATOM 97 N THR 26 -11.862 -20.252 7.312 1.00 3.00 N ATOM 98 CA THR 26 -12.944 -20.287 8.288 1.00 3.00 C ATOM 99 C THR 26 -12.476 -20.674 9.691 1.00 3.00 C ATOM 100 O THR 26 -11.416 -21.326 9.868 1.00 3.00 O ATOM 101 N THR 27 -13.293 -20.326 10.671 1.00 3.00 N ATOM 102 CA THR 27 -13.069 -20.773 12.063 1.00 3.00 C ATOM 103 C THR 27 -13.034 -22.305 12.126 1.00 3.00 C ATOM 104 O THR 27 -12.199 -22.894 12.850 1.00 3.00 O ATOM 105 N ASN 28 -13.892 -22.971 11.362 1.00 3.00 N ATOM 106 CA ASN 28 -13.831 -24.446 11.286 1.00 3.00 C ATOM 107 C ASN 28 -12.494 -24.980 10.818 1.00 3.00 C ATOM 108 O ASN 28 -11.974 -25.980 11.374 1.00 3.00 O ATOM 109 N HIS 29 -11.904 -24.339 9.797 1.00 3.00 N ATOM 110 CA HIS 29 -10.606 -24.729 9.281 1.00 3.00 C ATOM 111 C HIS 29 -9.566 -24.544 10.390 1.00 3.00 C ATOM 112 O HIS 29 -8.680 -25.378 10.602 1.00 3.00 O ATOM 113 N ILE 30 -9.676 -23.404 11.075 1.00 3.00 N ATOM 114 CA ILE 30 -8.700 -23.091 12.150 1.00 3.00 C ATOM 115 C ILE 30 -8.819 -24.125 13.285 1.00 3.00 C ATOM 116 O ILE 30 -7.783 -24.639 13.768 1.00 3.00 O ATOM 117 N ALA 31 -10.058 -24.486 13.687 1.00 3.00 N ATOM 118 CA ALA 31 -10.262 -25.558 14.631 1.00 3.00 C ATOM 119 C ALA 31 -9.592 -26.865 14.229 1.00 3.00 C ATOM 120 O ALA 31 -8.853 -27.467 15.018 1.00 3.00 O ATOM 121 N ALA 32 -9.845 -27.291 13.000 1.00 3.00 N ATOM 122 CA ALA 32 -9.260 -28.540 12.500 1.00 3.00 C ATOM 123 C ALA 32 -7.756 -28.476 12.598 1.00 3.00 C ATOM 124 O ALA 32 -7.115 -29.398 13.124 1.00 3.00 O ATOM 125 N HIS 33 -7.168 -27.379 12.126 1.00 3.00 N ATOM 126 CA HIS 33 -5.718 -27.235 12.138 1.00 3.00 C ATOM 127 C HIS 33 -5.159 -27.194 13.539 1.00 3.00 C ATOM 128 O HIS 33 -4.023 -27.607 13.765 1.00 3.00 O ATOM 129 N LEU 34 -5.926 -26.623 14.484 1.00 3.00 N ATOM 130 CA LEU 34 -5.473 -26.535 15.880 1.00 3.00 C ATOM 131 C LEU 34 -5.736 -27.824 16.681 1.00 3.00 C ATOM 132 O LEU 34 -5.398 -27.894 17.846 1.00 3.00 O ATOM 133 N ALA 35 -6.401 -28.813 16.064 1.00 3.00 N ATOM 134 CA ALA 35 -6.801 -30.023 16.715 1.00 3.00 C ATOM 135 C ALA 35 -7.846 -29.874 17.775 1.00 3.00 C ATOM 136 O ALA 35 -7.815 -30.565 18.785 1.00 3.00 O ATOM 137 N ILE 36 -8.781 -28.963 17.543 1.00 3.00 N ATOM 138 CA ILE 36 -9.896 -28.766 18.460 1.00 3.00 C ATOM 139 C ILE 36 -11.191 -28.907 17.650 1.00 3.00 C ATOM 140 O ILE 36 -11.197 -28.821 16.390 1.00 3.00 O ATOM 141 N SER 37 -12.281 -29.190 18.342 1.00 3.00 N ATOM 142 CA SER 37 -13.572 -29.302 17.707 1.00 3.00 C ATOM 143 C SER 37 -14.094 -27.905 17.292 1.00 3.00 C ATOM 144 O SER 37 -13.692 -26.868 17.827 1.00 3.00 O ATOM 145 N PRO 38 -15.030 -27.895 16.345 1.00 3.00 N ATOM 146 CA PRO 38 -15.682 -26.662 15.945 1.00 3.00 C ATOM 147 C PRO 38 -16.396 -26.091 17.168 1.00 3.00 C ATOM 148 O PRO 38 -16.413 -24.902 17.384 1.00 3.00 O ATOM 149 N GLY 39 -17.000 -26.946 17.969 1.00 3.00 N ATOM 150 CA GLY 39 -17.594 -26.475 19.191 1.00 3.00 C ATOM 151 C GLY 39 -16.620 -25.685 20.051 1.00 3.00 C ATOM 152 O GLY 39 -16.960 -24.630 20.603 1.00 3.00 O ATOM 153 N ASN 40 -15.410 -26.195 20.189 1.00 3.00 N ATOM 154 CA ASN 40 -14.404 -25.519 20.996 1.00 3.00 C ATOM 155 C ASN 40 -13.976 -24.181 20.428 1.00 3.00 C ATOM 156 O ASN 40 -13.884 -23.182 21.164 1.00 3.00 O ATOM 157 N LEU 41 -13.714 -24.085 19.140 1.00 3.00 N ATOM 158 CA LEU 41 -13.245 -22.789 18.645 1.00 3.00 C ATOM 159 C LEU 41 -14.337 -21.716 18.749 1.00 3.00 C ATOM 160 O LEU 41 -14.012 -20.569 19.034 1.00 3.00 O ATOM 161 N TYR 42 -15.617 -22.068 18.568 1.00 3.00 N ATOM 162 CA TYR 42 -16.680 -21.062 18.578 1.00 3.00 C ATOM 163 C TYR 42 -17.003 -20.668 20.005 1.00 3.00 C ATOM 164 O TYR 42 -17.539 -19.557 20.248 1.00 3.00 O ATOM 165 N TYR 43 -16.610 -21.499 20.965 1.00 3.00 N ATOM 166 CA TYR 43 -16.640 -21.064 22.333 1.00 3.00 C ATOM 167 C TYR 43 -15.658 -19.917 22.614 1.00 3.00 C ATOM 168 O TYR 43 -16.032 -18.930 23.286 1.00 3.00 O ATOM 169 N HIS 44 -14.398 -20.048 22.147 1.00 3.00 N ATOM 170 CA HIS 44 -13.402 -18.992 22.316 1.00 3.00 C ATOM 171 C HIS 44 -13.686 -17.739 21.488 1.00 3.00 C ATOM 172 O HIS 44 -13.456 -16.616 21.961 1.00 3.00 O ATOM 173 N PHE 45 -14.124 -17.905 20.246 1.00 3.00 N ATOM 174 CA PHE 45 -14.255 -16.789 19.332 1.00 3.00 C ATOM 175 C PHE 45 -15.561 -16.841 18.542 1.00 3.00 C ATOM 176 O PHE 45 -15.895 -17.878 18.017 1.00 3.00 O ATOM 177 N ARG 46 -16.252 -15.718 18.382 1.00 3.00 N ATOM 178 CA ARG 46 -17.565 -15.682 17.674 1.00 3.00 C ATOM 179 C ARG 46 -17.319 -15.591 16.194 1.00 3.00 C ATOM 180 O ARG 46 -18.150 -15.999 15.392 1.00 3.00 O ATOM 181 N ASN 47 -16.183 -14.986 15.825 1.00 3.00 N ATOM 182 CA ASN 47 -15.916 -14.798 14.443 1.00 3.00 C ATOM 183 C ASN 47 -14.444 -14.507 14.237 1.00 3.00 C ATOM 184 O ASN 47 -13.742 -14.373 15.201 1.00 3.00 O ATOM 185 N LYS 48 -14.010 -14.486 12.984 1.00 3.00 N ATOM 186 CA LYS 48 -12.598 -14.356 12.632 1.00 3.00 C ATOM 187 C LYS 48 -12.051 -13.032 13.081 1.00 3.00 C ATOM 188 O LYS 48 -10.853 -12.957 13.408 1.00 3.00 O ATOM 189 N SER 49 -12.874 -11.981 13.016 1.00 3.00 N ATOM 190 CA SER 49 -12.408 -10.629 13.353 1.00 3.00 C ATOM 191 C SER 49 -12.110 -10.493 14.829 1.00 3.00 C ATOM 192 O SER 49 -11.107 -9.889 15.204 1.00 3.00 O ATOM 193 N ASP 50 -12.967 -11.063 15.657 1.00 3.00 N ATOM 194 CA ASP 50 -12.728 -11.081 17.088 1.00 3.00 C ATOM 195 C ASP 50 -11.401 -11.811 17.352 1.00 3.00 C ATOM 196 O ASP 50 -10.586 -11.399 18.213 1.00 3.00 O ATOM 197 N ILE 51 -11.196 -12.921 16.634 1.00 3.00 N ATOM 198 CA ILE 51 -9.961 -13.687 16.827 1.00 3.00 C ATOM 199 C ILE 51 -8.744 -12.859 16.372 1.00 3.00 C ATOM 200 O ILE 51 -7.737 -12.730 17.088 1.00 3.00 O ATOM 201 N ILE 52 -8.831 -12.313 15.186 1.00 3.00 N ATOM 202 CA ILE 52 -7.726 -11.497 14.696 1.00 3.00 C ATOM 203 C ILE 52 -7.455 -10.281 15.578 1.00 3.00 C ATOM 204 O ILE 52 -6.290 -9.958 15.891 1.00 3.00 O ATOM 205 N TYR 53 -8.510 -9.604 15.998 1.00 3.00 N ATOM 206 CA TYR 53 -8.388 -8.452 16.884 1.00 3.00 C ATOM 207 C TYR 53 -7.648 -8.785 18.168 1.00 3.00 C ATOM 208 O TYR 53 -6.789 -8.053 18.616 1.00 3.00 O ATOM 209 N GLU 54 -7.902 -9.969 18.718 1.00 3.00 N ATOM 210 CA GLU 54 -7.258 -10.382 19.939 1.00 3.00 C ATOM 211 C GLU 54 -5.741 -10.566 19.752 1.00 3.00 C ATOM 212 O GLU 54 -4.932 -10.167 20.596 1.00 3.00 O ATOM 213 N ILE 55 -5.331 -11.191 18.657 1.00 3.00 N ATOM 214 CA ILE 55 -3.935 -11.353 18.458 1.00 3.00 C ATOM 215 C ILE 55 -3.576 -9.914 18.810 1.00 3.00 C ATOM 216 O ILE 55 -2.415 -9.588 19.071 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 212 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 25.37 98.1 104 100.0 104 ARMSMC SECONDARY STRUCTURE . . 6.52 100.0 76 100.0 76 ARMSMC SURFACE . . . . . . . . 29.71 97.3 74 100.0 74 ARMSMC BURIED . . . . . . . . 7.32 100.0 30 100.0 30 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 47 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 35 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 26 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.26 (Number of atoms: 53) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.26 53 100.0 53 CRMSCA CRN = ALL/NP . . . . . 0.0238 CRMSCA SECONDARY STRUCTURE . . 0.78 38 100.0 38 CRMSCA SURFACE . . . . . . . . 1.43 38 100.0 38 CRMSCA BURIED . . . . . . . . 0.67 15 100.0 15 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.23 212 80.6 263 CRMSMC SECONDARY STRUCTURE . . 0.80 152 80.4 189 CRMSMC SURFACE . . . . . . . . 1.38 152 80.9 188 CRMSMC BURIED . . . . . . . . 0.71 60 80.0 75 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 217 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 183 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 162 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 156 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 61 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.23 212 49.4 429 CRMSALL SECONDARY STRUCTURE . . 0.80 152 48.4 314 CRMSALL SURFACE . . . . . . . . 1.38 152 49.4 308 CRMSALL BURIED . . . . . . . . 0.71 60 49.6 121 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.213 0.581 0.645 53 100.0 53 ERRCA SECONDARY STRUCTURE . . 2.273 0.618 0.683 38 100.0 38 ERRCA SURFACE . . . . . . . . 2.151 0.550 0.618 38 100.0 38 ERRCA BURIED . . . . . . . . 2.369 0.660 0.712 15 100.0 15 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.186 0.575 0.642 212 80.6 263 ERRMC SECONDARY STRUCTURE . . 2.253 0.611 0.678 152 80.4 189 ERRMC SURFACE . . . . . . . . 2.127 0.548 0.619 152 80.9 188 ERRMC BURIED . . . . . . . . 2.335 0.645 0.701 60 80.0 75 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 217 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 183 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 162 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 156 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 61 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.186 0.575 0.642 212 49.4 429 ERRALL SECONDARY STRUCTURE . . 2.253 0.611 0.678 152 48.4 314 ERRALL SURFACE . . . . . . . . 2.127 0.548 0.619 152 49.4 308 ERRALL BURIED . . . . . . . . 2.335 0.645 0.701 60 49.6 121 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 36 52 52 52 53 53 53 DISTCA CA (P) 67.92 98.11 98.11 98.11 100.00 53 DISTCA CA (RMS) 0.64 0.88 0.88 0.88 1.26 DISTCA ALL (N) 143 206 208 209 212 212 429 DISTALL ALL (P) 33.33 48.02 48.48 48.72 49.42 429 DISTALL ALL (RMS) 0.65 0.89 0.91 0.95 1.23 DISTALL END of the results output