####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 52 ( 208), selected 52 , name T0611AL396_1-D1 # Molecule2: number of CA atoms 53 ( 429), selected 52 , name T0611-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0611AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 4 - 55 1.01 1.01 LCS_AVERAGE: 98.11 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 4 - 55 1.01 1.01 LCS_AVERAGE: 98.11 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 47 7 - 53 1.00 1.03 LONGEST_CONTINUOUS_SEGMENT: 47 8 - 54 0.99 1.03 LONGEST_CONTINUOUS_SEGMENT: 47 9 - 55 1.00 1.04 LCS_AVERAGE: 87.48 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 52 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 4 K 4 36 52 52 16 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 5 T 5 36 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 6 R 6 36 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 7 D 7 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 8 K 8 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 9 I 9 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 10 L 10 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 11 L 11 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 12 S 12 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 13 S 13 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 14 L 14 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 15 E 15 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 16 L 16 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT F 17 F 17 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT N 18 N 18 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 19 D 19 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 20 K 20 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT G 21 G 21 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 22 E 22 47 52 52 3 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 23 R 23 47 52 52 7 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT N 24 N 24 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 25 I 25 47 52 52 18 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 26 T 26 47 52 52 14 24 41 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 27 T 27 47 52 52 14 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT N 28 N 28 47 52 52 15 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT H 29 H 29 47 52 52 8 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 30 I 30 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 31 A 31 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 32 A 32 47 52 52 8 28 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT H 33 H 33 47 52 52 8 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 34 L 34 47 52 52 9 28 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 35 A 35 47 52 52 7 27 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 36 I 36 47 52 52 8 28 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 37 S 37 47 52 52 8 17 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT P 38 P 38 47 52 52 8 32 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT G 39 G 39 47 52 52 8 32 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT N 40 N 40 47 52 52 8 17 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 41 L 41 47 52 52 6 27 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Y 42 Y 42 47 52 52 6 28 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Y 43 Y 43 47 52 52 6 27 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT H 44 H 44 47 52 52 8 28 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT F 45 F 45 47 52 52 8 28 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 46 R 46 47 52 52 16 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT N 47 N 47 47 52 52 16 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 48 K 48 47 52 52 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 49 S 49 47 52 52 8 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 50 D 50 47 52 52 9 32 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 51 I 51 47 52 52 8 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 52 I 52 47 52 52 18 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Y 53 Y 53 47 52 52 12 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 54 E 54 47 52 52 18 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 55 I 55 47 52 52 15 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_AVERAGE LCS_A: 94.57 ( 87.48 98.11 98.11 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 19 33 51 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 GDT PERCENT_AT 35.85 62.26 96.23 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 98.11 GDT RMS_LOCAL 0.32 0.59 1.00 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 GDT RMS_ALL_AT 1.33 1.25 1.02 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 4 K 4 0.818 5 0.640 0.640 2.132 77.381 34.392 LGA T 5 T 5 1.000 3 0.061 0.061 1.000 90.476 51.701 LGA R 6 R 6 0.967 7 0.059 0.059 1.152 85.952 31.255 LGA D 7 D 7 1.132 4 0.053 0.053 1.260 81.429 40.714 LGA K 8 K 8 1.141 5 0.039 0.039 1.242 81.429 36.190 LGA I 9 I 9 1.133 4 0.032 0.032 1.133 83.690 41.845 LGA L 10 L 10 1.045 4 0.023 0.023 1.098 85.952 42.976 LGA L 11 L 11 0.830 4 0.024 0.024 0.878 90.476 45.238 LGA S 12 S 12 0.675 2 0.039 0.039 0.754 92.857 61.905 LGA S 13 S 13 0.500 2 0.030 0.030 0.569 97.619 65.079 LGA L 14 L 14 0.430 4 0.058 0.058 0.494 100.000 50.000 LGA E 15 E 15 0.313 5 0.046 0.046 0.401 100.000 44.444 LGA L 16 L 16 0.332 4 0.019 0.019 0.498 100.000 50.000 LGA F 17 F 17 0.455 7 0.044 0.044 0.665 97.619 35.498 LGA N 18 N 18 0.310 4 0.046 0.046 0.707 97.619 48.810 LGA D 19 D 19 0.701 4 0.055 0.055 0.988 92.857 46.429 LGA K 20 K 20 1.251 5 0.075 0.075 1.589 79.286 35.238 LGA G 21 G 21 1.247 0 0.111 0.111 1.247 81.429 81.429 LGA E 22 E 22 1.231 5 0.125 0.125 1.231 85.952 38.201 LGA R 23 R 23 1.347 7 0.089 0.089 1.347 85.952 31.255 LGA N 24 N 24 0.586 4 0.123 0.123 0.700 92.857 46.429 LGA I 25 I 25 0.607 4 0.011 0.011 0.804 92.857 46.429 LGA T 26 T 26 1.648 3 0.057 0.057 1.648 79.286 45.306 LGA T 27 T 27 1.345 3 0.087 0.087 1.520 81.548 46.599 LGA N 28 N 28 1.464 4 0.047 0.047 1.524 79.286 39.643 LGA H 29 H 29 1.315 6 0.022 0.022 1.347 83.690 33.476 LGA I 30 I 30 0.347 4 0.061 0.061 0.688 97.619 48.810 LGA A 31 A 31 0.326 1 0.023 0.023 0.544 95.238 76.190 LGA A 32 A 32 1.179 1 0.046 0.046 1.461 83.690 66.952 LGA H 33 H 33 0.859 6 0.182 0.182 1.566 86.071 34.429 LGA L 34 L 34 0.996 4 0.067 0.067 1.636 83.810 41.905 LGA A 35 A 35 1.605 1 0.050 0.050 1.955 75.000 60.000 LGA I 36 I 36 1.170 4 0.249 0.249 1.493 83.690 41.845 LGA S 37 S 37 1.569 2 0.022 0.022 1.880 77.143 51.429 LGA P 38 P 38 0.972 3 0.042 0.042 1.079 88.214 50.408 LGA G 39 G 39 0.878 0 0.050 0.050 1.168 85.952 85.952 LGA N 40 N 40 1.644 4 0.054 0.054 1.816 75.000 37.500 LGA L 41 L 41 1.265 4 0.031 0.031 1.363 81.429 40.714 LGA Y 42 Y 42 1.090 8 0.057 0.057 1.201 81.429 27.143 LGA Y 43 Y 43 1.296 8 0.023 0.023 1.296 81.429 27.143 LGA H 44 H 44 1.062 6 0.038 0.038 1.085 83.690 33.476 LGA F 45 F 45 1.121 7 0.605 0.605 3.832 69.762 25.368 LGA R 46 R 46 0.252 7 0.170 0.170 0.440 100.000 36.364 LGA N 47 N 47 0.319 4 0.033 0.033 0.393 100.000 50.000 LGA K 48 K 48 0.519 5 0.102 0.102 0.577 92.857 41.270 LGA S 49 S 49 0.677 2 0.046 0.046 0.677 90.476 60.317 LGA D 50 D 50 0.703 4 0.030 0.030 0.703 90.476 45.238 LGA I 51 I 51 0.881 4 0.027 0.027 0.949 90.476 45.238 LGA I 52 I 52 0.930 4 0.017 0.017 1.065 88.214 44.107 LGA Y 53 Y 53 0.761 8 0.061 0.061 1.059 88.214 29.405 LGA E 54 E 54 1.237 5 0.030 0.030 1.426 81.429 36.190 LGA I 55 I 55 1.293 4 0.024 0.024 1.525 79.286 39.643 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 52 208 208 100.00 421 208 49.41 53 SUMMARY(RMSD_GDC): 1.015 1.051 1.051 85.436 44.293 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 52 53 4.0 52 1.01 89.151 95.142 4.665 LGA_LOCAL RMSD: 1.015 Number of atoms: 52 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.015 Number of assigned atoms: 52 Std_ASGN_ATOMS RMSD: 1.015 Standard rmsd on all 52 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.325181 * X + 0.334603 * Y + -0.884476 * Z + 41.817741 Y_new = -0.833400 * X + 0.543394 * Y + -0.100833 * Z + -31.811363 Z_new = 0.446880 * X + 0.769912 * Y + 0.455560 * Z + 76.015869 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.198779 -0.463275 1.036499 [DEG: -68.6850 -26.5437 59.3870 ] ZXZ: -1.457283 1.097796 0.525906 [DEG: -83.4962 62.8991 30.1322 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0611AL396_1-D1 REMARK 2: T0611-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0611AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 52 53 4.0 52 1.01 95.142 1.01 REMARK ---------------------------------------------------------- MOLECULE T0611AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1jt6_A ATOM 1 N LYS 4 -3.806 -22.591 26.834 1.00 0.00 N ATOM 2 CA LYS 4 -2.982 -23.334 25.807 1.00 0.00 C ATOM 3 C LYS 4 -3.664 -23.865 24.548 1.00 0.00 C ATOM 4 O LYS 4 -3.094 -23.773 23.470 1.00 0.00 O ATOM 5 N THR 5 -4.836 -24.472 24.634 1.00 0.00 N ATOM 6 CA THR 5 -5.489 -24.855 23.371 1.00 0.00 C ATOM 7 C THR 5 -5.862 -23.496 22.690 1.00 0.00 C ATOM 8 O THR 5 -5.685 -23.300 21.481 1.00 0.00 O ATOM 9 N ARG 6 -6.339 -22.548 23.490 1.00 0.00 N ATOM 10 CA ARG 6 -6.693 -21.227 22.984 1.00 0.00 C ATOM 11 C ARG 6 -5.456 -20.682 22.254 1.00 0.00 C ATOM 12 O ARG 6 -5.564 -20.164 21.155 1.00 0.00 O ATOM 13 N ASP 7 -4.276 -20.845 22.848 1.00 0.00 N ATOM 14 CA ASP 7 -3.059 -20.354 22.218 1.00 0.00 C ATOM 15 C ASP 7 -2.632 -21.146 20.996 1.00 0.00 C ATOM 16 O ASP 7 -1.986 -20.597 20.109 1.00 0.00 O ATOM 17 N LYS 8 -2.995 -22.422 20.926 1.00 0.00 N ATOM 18 CA LYS 8 -2.660 -23.214 19.752 1.00 0.00 C ATOM 19 C LYS 8 -3.590 -22.700 18.644 1.00 0.00 C ATOM 20 O LYS 8 -3.163 -22.535 17.512 1.00 0.00 O ATOM 21 N ILE 9 -4.843 -22.389 18.969 1.00 0.00 N ATOM 22 CA ILE 9 -5.796 -21.864 17.981 1.00 0.00 C ATOM 23 C ILE 9 -5.354 -20.508 17.433 1.00 0.00 C ATOM 24 O ILE 9 -5.489 -20.238 16.244 1.00 0.00 O ATOM 25 N LEU 10 -4.863 -19.641 18.307 1.00 0.00 N ATOM 26 CA LEU 10 -4.400 -18.320 17.894 1.00 0.00 C ATOM 27 C LEU 10 -3.177 -18.436 16.982 1.00 0.00 C ATOM 28 O LEU 10 -3.122 -17.776 15.908 1.00 0.00 O ATOM 29 N LEU 11 -2.205 -19.264 17.423 1.00 0.00 N ATOM 30 CA LEU 11 -0.975 -19.504 16.675 1.00 0.00 C ATOM 31 C LEU 11 -1.287 -20.086 15.303 1.00 0.00 C ATOM 32 O LEU 11 -0.791 -19.632 14.240 1.00 0.00 O ATOM 33 N SER 12 -2.140 -21.096 15.284 1.00 0.00 N ATOM 34 CA SER 12 -2.466 -21.693 13.990 1.00 0.00 C ATOM 35 C SER 12 -3.220 -20.699 13.105 1.00 0.00 C ATOM 36 O SER 12 -2.929 -20.577 11.878 1.00 0.00 O ATOM 37 N SER 13 -4.183 -19.980 13.707 1.00 0.00 N ATOM 38 CA SER 13 -4.972 -19.032 12.920 1.00 0.00 C ATOM 39 C SER 13 -4.093 -17.974 12.329 1.00 0.00 C ATOM 40 O SER 13 -4.283 -17.634 11.167 1.00 0.00 O ATOM 41 N LEU 14 -3.131 -17.459 13.104 1.00 0.00 N ATOM 42 CA LEU 14 -2.216 -16.422 12.604 1.00 0.00 C ATOM 43 C LEU 14 -1.497 -16.901 11.303 1.00 0.00 C ATOM 44 O LEU 14 -1.564 -16.243 10.237 1.00 0.00 O ATOM 45 N GLU 15 -0.883 -18.073 11.376 1.00 0.00 N ATOM 46 CA GLU 15 -0.195 -18.656 10.230 1.00 0.00 C ATOM 47 C GLU 15 -1.128 -18.877 9.053 1.00 0.00 C ATOM 48 O GLU 15 -0.733 -18.670 7.900 1.00 0.00 O ATOM 49 N LEU 16 -2.359 -19.306 9.317 1.00 0.00 N ATOM 50 CA LEU 16 -3.304 -19.506 8.224 1.00 0.00 C ATOM 51 C LEU 16 -3.632 -18.156 7.606 1.00 0.00 C ATOM 52 O LEU 16 -3.621 -18.019 6.385 1.00 0.00 O ATOM 53 N PHE 17 -3.920 -17.151 8.431 1.00 0.00 N ATOM 54 CA PHE 17 -4.230 -15.823 7.887 1.00 0.00 C ATOM 55 C PHE 17 -3.064 -15.325 7.031 1.00 0.00 C ATOM 56 O PHE 17 -3.282 -14.732 5.956 1.00 0.00 O ATOM 57 N ASN 18 -1.836 -15.551 7.504 1.00 0.00 N ATOM 58 CA ASN 18 -0.671 -15.131 6.736 1.00 0.00 C ATOM 59 C ASN 18 -0.553 -15.886 5.404 1.00 0.00 C ATOM 60 O ASN 18 -0.404 -15.264 4.380 1.00 0.00 O ATOM 61 N ASP 19 -0.623 -17.212 5.404 1.00 0.00 N ATOM 62 CA ASP 19 -0.489 -17.952 4.150 1.00 0.00 C ATOM 63 C ASP 19 -1.631 -17.782 3.179 1.00 0.00 C ATOM 64 O ASP 19 -1.400 -17.730 1.983 1.00 0.00 O ATOM 65 N LYS 20 -2.865 -17.704 3.671 1.00 0.00 N ATOM 66 CA LYS 20 -4.000 -17.627 2.758 1.00 0.00 C ATOM 67 C LYS 20 -4.802 -16.339 2.841 1.00 0.00 C ATOM 68 O LYS 20 -5.746 -16.154 2.097 1.00 0.00 O ATOM 69 N GLY 21 -4.451 -15.446 3.740 1.00 0.00 N ATOM 70 CA GLY 21 -5.229 -14.222 3.851 1.00 0.00 C ATOM 71 C GLY 21 -6.485 -14.388 4.710 1.00 0.00 C ATOM 72 O GLY 21 -6.947 -15.525 4.952 1.00 0.00 O ATOM 73 N GLU 22 -7.057 -13.263 5.138 1.00 0.00 N ATOM 74 CA GLU 22 -8.232 -13.290 5.997 1.00 0.00 C ATOM 75 C GLU 22 -9.492 -13.996 5.487 1.00 0.00 C ATOM 76 O GLU 22 -9.995 -14.921 6.129 1.00 0.00 O ATOM 77 N ARG 23 -9.991 -13.583 4.334 1.00 0.00 N ATOM 78 CA ARG 23 -11.220 -14.135 3.774 1.00 0.00 C ATOM 79 C ARG 23 -11.200 -15.567 3.422 1.00 0.00 C ATOM 80 O ARG 23 -12.194 -16.266 3.623 1.00 0.00 O ATOM 81 N ASN 24 -10.096 -16.036 2.869 1.00 0.00 N ATOM 82 CA ASN 24 -10.045 -17.429 2.442 1.00 0.00 C ATOM 83 C ASN 24 -9.896 -18.444 3.580 1.00 0.00 C ATOM 84 O ASN 24 -10.188 -19.619 3.375 1.00 0.00 O ATOM 85 N ILE 25 -9.405 -18.009 4.747 1.00 0.00 N ATOM 86 CA ILE 25 -9.222 -18.906 5.895 1.00 0.00 C ATOM 87 C ILE 25 -10.590 -19.213 6.509 1.00 0.00 C ATOM 88 O ILE 25 -11.375 -18.297 6.792 1.00 0.00 O ATOM 89 N THR 26 -10.883 -20.501 6.683 1.00 0.00 N ATOM 90 CA THR 26 -12.173 -20.940 7.229 1.00 0.00 C ATOM 91 C THR 26 -11.977 -21.376 8.653 1.00 0.00 C ATOM 92 O THR 26 -10.892 -21.854 9.016 1.00 0.00 O ATOM 93 N THR 27 -13.016 -21.235 9.471 1.00 0.00 N ATOM 94 CA THR 27 -12.898 -21.657 10.858 1.00 0.00 C ATOM 95 C THR 27 -12.784 -23.177 10.924 1.00 0.00 C ATOM 96 O THR 27 -12.295 -23.690 11.908 1.00 0.00 O ATOM 97 N ASN 28 -13.253 -23.878 9.891 1.00 0.00 N ATOM 98 CA ASN 28 -13.155 -25.318 9.863 1.00 0.00 C ATOM 99 C ASN 28 -11.690 -25.693 9.819 1.00 0.00 C ATOM 100 O ASN 28 -11.251 -26.621 10.509 1.00 0.00 O ATOM 101 N HIS 29 -10.913 -24.960 9.016 1.00 0.00 N ATOM 102 CA HIS 29 -9.481 -25.232 8.906 1.00 0.00 C ATOM 103 C HIS 29 -8.829 -24.950 10.244 1.00 0.00 C ATOM 104 O HIS 29 -7.970 -25.736 10.748 1.00 0.00 O ATOM 105 N ILE 30 -9.242 -23.828 10.834 1.00 0.00 N ATOM 106 CA ILE 30 -8.650 -23.466 12.104 1.00 0.00 C ATOM 107 C ILE 30 -8.986 -24.511 13.146 1.00 0.00 C ATOM 108 O ILE 30 -8.150 -24.825 13.984 1.00 0.00 O ATOM 109 N ALA 31 -10.187 -25.081 13.057 1.00 0.00 N ATOM 110 CA ALA 31 -10.626 -26.070 14.013 1.00 0.00 C ATOM 111 C ALA 31 -9.840 -27.366 13.912 1.00 0.00 C ATOM 112 O ALA 31 -9.331 -27.855 14.928 1.00 0.00 O ATOM 113 N ALA 32 -9.765 -27.920 12.702 1.00 0.00 N ATOM 114 CA ALA 32 -9.064 -29.154 12.497 1.00 0.00 C ATOM 115 C ALA 32 -7.585 -28.982 12.708 1.00 0.00 C ATOM 116 O ALA 32 -6.996 -29.764 13.435 1.00 0.00 O ATOM 117 N HIS 33 -6.968 -27.957 12.122 1.00 0.00 N ATOM 118 CA HIS 33 -5.523 -27.811 12.313 1.00 0.00 C ATOM 119 C HIS 33 -5.091 -27.548 13.742 1.00 0.00 C ATOM 120 O HIS 33 -3.950 -27.756 14.081 1.00 0.00 O ATOM 121 N LEU 34 -5.978 -27.094 14.614 1.00 0.00 N ATOM 122 CA LEU 34 -5.521 -26.859 15.991 1.00 0.00 C ATOM 123 C LEU 34 -6.022 -27.957 16.915 1.00 0.00 C ATOM 124 O LEU 34 -5.755 -27.926 18.116 1.00 0.00 O ATOM 125 N ALA 35 -6.707 -28.937 16.317 1.00 0.00 N ATOM 126 CA ALA 35 -7.289 -30.085 17.012 1.00 0.00 C ATOM 127 C ALA 35 -8.248 -29.652 18.097 1.00 0.00 C ATOM 128 O ALA 35 -8.192 -30.119 19.238 1.00 0.00 O ATOM 129 N ILE 36 -9.122 -28.738 17.738 1.00 0.00 N ATOM 130 CA ILE 36 -10.088 -28.237 18.694 1.00 0.00 C ATOM 131 C ILE 36 -11.504 -28.496 18.190 1.00 0.00 C ATOM 132 O ILE 36 -11.758 -29.523 17.594 1.00 0.00 O ATOM 133 N SER 37 -12.426 -27.572 18.405 1.00 0.00 N ATOM 134 CA SER 37 -13.813 -27.787 17.944 1.00 0.00 C ATOM 135 C SER 37 -14.553 -26.492 17.648 1.00 0.00 C ATOM 136 O SER 37 -14.151 -25.424 18.110 1.00 0.00 O ATOM 137 N PRO 38 -15.617 -26.561 16.864 1.00 0.00 N ATOM 138 CA PRO 38 -16.370 -25.337 16.602 1.00 0.00 C ATOM 139 C PRO 38 -16.777 -24.774 17.965 1.00 0.00 C ATOM 140 O PRO 38 -16.717 -23.560 18.203 1.00 0.00 O ATOM 141 N GLY 39 -17.164 -25.664 18.871 1.00 0.00 N ATOM 142 CA GLY 39 -17.590 -25.236 20.196 1.00 0.00 C ATOM 143 C GLY 39 -16.570 -24.450 20.980 1.00 0.00 C ATOM 144 O GLY 39 -16.878 -23.401 21.573 1.00 0.00 O ATOM 145 N ASN 40 -15.338 -24.940 20.983 1.00 0.00 N ATOM 146 CA ASN 40 -14.302 -24.258 21.726 1.00 0.00 C ATOM 147 C ASN 40 -13.951 -22.935 21.047 1.00 0.00 C ATOM 148 O ASN 40 -13.681 -21.912 21.689 1.00 0.00 O ATOM 149 N LEU 41 -13.968 -22.948 19.731 1.00 0.00 N ATOM 150 CA LEU 41 -13.614 -21.738 19.026 1.00 0.00 C ATOM 151 C LEU 41 -14.689 -20.690 19.306 1.00 0.00 C ATOM 152 O LEU 41 -14.372 -19.547 19.618 1.00 0.00 O ATOM 153 N TYR 42 -15.956 -21.114 19.278 1.00 0.00 N ATOM 154 CA TYR 42 -17.082 -20.229 19.560 1.00 0.00 C ATOM 155 C TYR 42 -16.979 -19.652 20.955 1.00 0.00 C ATOM 156 O TYR 42 -17.184 -18.458 21.172 1.00 0.00 O ATOM 157 N TYR 43 -16.668 -20.518 21.900 1.00 0.00 N ATOM 158 CA TYR 43 -16.516 -20.126 23.295 1.00 0.00 C ATOM 159 C TYR 43 -15.464 -19.049 23.564 1.00 0.00 C ATOM 160 O TYR 43 -15.683 -18.132 24.368 1.00 0.00 O ATOM 161 N HIS 44 -14.295 -19.171 22.930 1.00 0.00 N ATOM 162 CA HIS 44 -13.229 -18.211 23.191 1.00 0.00 C ATOM 163 C HIS 44 -13.350 -16.977 22.357 1.00 0.00 C ATOM 164 O HIS 44 -12.993 -15.894 22.801 1.00 0.00 O ATOM 165 N PHE 45 -13.881 -17.115 21.153 1.00 0.00 N ATOM 166 CA PHE 45 -13.865 -15.963 20.292 1.00 0.00 C ATOM 167 C PHE 45 -15.149 -15.490 19.665 1.00 0.00 C ATOM 168 O PHE 45 -15.214 -14.337 19.214 1.00 0.00 O ATOM 169 N ARG 46 -16.154 -16.364 19.632 1.00 0.00 N ATOM 170 CA ARG 46 -17.457 -16.067 19.035 1.00 0.00 C ATOM 171 C ARG 46 -17.359 -16.044 17.519 1.00 0.00 C ATOM 172 O ARG 46 -18.056 -16.797 16.858 1.00 0.00 O ATOM 173 N ASN 47 -16.473 -15.250 16.936 1.00 0.00 N ATOM 174 CA ASN 47 -16.456 -15.220 15.467 1.00 0.00 C ATOM 175 C ASN 47 -15.063 -15.120 14.870 1.00 0.00 C ATOM 176 O ASN 47 -14.094 -14.803 15.570 1.00 0.00 O ATOM 177 N LYS 48 -14.980 -15.336 13.556 1.00 0.00 N ATOM 178 CA LYS 48 -13.707 -15.211 12.865 1.00 0.00 C ATOM 179 C LYS 48 -13.143 -13.831 13.140 1.00 0.00 C ATOM 180 O LYS 48 -11.993 -13.738 13.577 1.00 0.00 O ATOM 181 N SER 49 -13.961 -12.778 12.939 1.00 0.00 N ATOM 182 CA SER 49 -13.524 -11.381 13.149 1.00 0.00 C ATOM 183 C SER 49 -12.987 -11.183 14.559 1.00 0.00 C ATOM 184 O SER 49 -12.026 -10.453 14.807 1.00 0.00 O ATOM 185 N ASP 50 -13.634 -11.809 15.509 1.00 0.00 N ATOM 186 CA ASP 50 -13.151 -11.651 16.841 1.00 0.00 C ATOM 187 C ASP 50 -11.816 -12.327 17.077 1.00 0.00 C ATOM 188 O ASP 50 -10.944 -11.794 17.795 1.00 0.00 O ATOM 189 N ILE 51 -11.674 -13.499 16.475 1.00 0.00 N ATOM 190 CA ILE 51 -10.468 -14.250 16.581 1.00 0.00 C ATOM 191 C ILE 51 -9.371 -13.344 16.059 1.00 0.00 C ATOM 192 O ILE 51 -8.359 -13.119 16.730 1.00 0.00 O ATOM 193 N ILE 52 -9.575 -12.812 14.862 1.00 0.00 N ATOM 194 CA ILE 52 -8.557 -11.968 14.247 1.00 0.00 C ATOM 195 C ILE 52 -8.216 -10.755 15.156 1.00 0.00 C ATOM 196 O ILE 52 -7.035 -10.413 15.376 1.00 0.00 O ATOM 197 N TYR 53 -9.228 -10.122 15.717 1.00 0.00 N ATOM 198 CA TYR 53 -8.960 -9.007 16.616 1.00 0.00 C ATOM 199 C TYR 53 -8.109 -9.448 17.809 1.00 0.00 C ATOM 200 O TYR 53 -7.256 -8.699 18.284 1.00 0.00 O ATOM 201 N GLU 54 -8.323 -10.670 18.298 1.00 0.00 N ATOM 202 CA GLU 54 -7.554 -11.168 19.440 1.00 0.00 C ATOM 203 C GLU 54 -6.094 -11.385 19.046 1.00 0.00 C ATOM 204 O GLU 54 -5.147 -11.129 19.813 1.00 0.00 O ATOM 205 N ILE 55 -5.920 -11.862 17.826 1.00 0.00 N ATOM 206 CA ILE 55 -4.588 -12.050 17.298 1.00 0.00 C ATOM 207 C ILE 55 -3.925 -10.668 17.256 1.00 0.00 C ATOM 208 O ILE 55 -2.791 -10.521 17.682 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 208 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 29.21 93.1 102 98.1 104 ARMSMC SECONDARY STRUCTURE . . 8.29 98.7 76 100.0 76 ARMSMC SURFACE . . . . . . . . 29.22 94.4 72 97.3 74 ARMSMC BURIED . . . . . . . . 29.19 90.0 30 100.0 30 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 47 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 35 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 26 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.01 (Number of atoms: 52) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.01 52 98.1 53 CRMSCA CRN = ALL/NP . . . . . 0.0195 CRMSCA SECONDARY STRUCTURE . . 0.96 38 100.0 38 CRMSCA SURFACE . . . . . . . . 1.07 37 97.4 38 CRMSCA BURIED . . . . . . . . 0.86 15 100.0 15 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.05 208 79.1 263 CRMSMC SECONDARY STRUCTURE . . 0.97 152 80.4 189 CRMSMC SURFACE . . . . . . . . 1.07 148 78.7 188 CRMSMC BURIED . . . . . . . . 1.01 60 80.0 75 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 217 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 183 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 162 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 156 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 61 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.05 208 48.5 429 CRMSALL SECONDARY STRUCTURE . . 0.97 152 48.4 314 CRMSALL SURFACE . . . . . . . . 1.07 148 48.1 308 CRMSALL BURIED . . . . . . . . 1.01 60 49.6 121 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.938 1.000 0.500 52 98.1 53 ERRCA SECONDARY STRUCTURE . . 0.894 1.000 0.500 38 100.0 38 ERRCA SURFACE . . . . . . . . 0.996 1.000 0.500 37 97.4 38 ERRCA BURIED . . . . . . . . 0.794 1.000 0.500 15 100.0 15 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.951 1.000 0.500 208 79.1 263 ERRMC SECONDARY STRUCTURE . . 0.896 1.000 0.500 152 80.4 189 ERRMC SURFACE . . . . . . . . 0.987 1.000 0.500 148 78.7 188 ERRMC BURIED . . . . . . . . 0.860 1.000 0.500 60 80.0 75 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 217 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 183 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 162 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 156 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 61 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.951 1.000 0.500 208 48.5 429 ERRALL SECONDARY STRUCTURE . . 0.896 1.000 0.500 152 48.4 314 ERRALL SURFACE . . . . . . . . 0.987 1.000 0.500 148 48.1 308 ERRALL BURIED . . . . . . . . 0.860 1.000 0.500 60 49.6 121 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 28 52 52 52 52 52 53 DISTCA CA (P) 52.83 98.11 98.11 98.11 98.11 53 DISTCA CA (RMS) 0.69 1.01 1.01 1.01 1.01 DISTCA ALL (N) 111 206 207 208 208 208 429 DISTALL ALL (P) 25.87 48.02 48.25 48.48 48.48 429 DISTALL ALL (RMS) 0.67 1.01 1.02 1.05 1.05 DISTALL END of the results output