####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # ERROR! Check molecule: 1 and the amino acid number 7 and name ASP # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 7 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 15 and name GLU # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 15 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 18 and name ASN # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 18 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 29 and name HIS # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 29 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 7 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 15 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 18 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 29 (molecule: 1) # Only one atom (first) is used for calculations. # Molecule1: number of CA atoms 53 ( 216), selected 53 , name T0611AL285_1-D1 # Molecule2: number of CA atoms 53 ( 429), selected 53 , name T0611-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0611AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 3 - 55 1.22 1.22 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 3 - 55 1.22 1.22 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 4 - 55 0.78 1.26 LCS_AVERAGE: 96.37 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 3 M 3 3 53 53 0 3 4 4 4 5 35 50 51 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 4 K 4 52 53 53 24 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 5 T 5 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 6 R 6 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 7 D 7 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 8 K 8 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 9 I 9 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 10 L 10 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 11 L 11 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 12 S 12 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 13 S 13 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 14 L 14 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 15 E 15 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 16 L 16 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 17 F 17 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 18 N 18 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 19 D 19 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 20 K 20 52 53 53 12 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT G 21 G 21 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 22 E 22 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 23 R 23 52 53 53 7 42 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 24 N 24 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 25 I 25 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 26 T 26 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 27 T 27 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 28 N 28 52 53 53 23 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT H 29 H 29 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 30 I 30 52 53 53 21 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 31 A 31 52 53 53 12 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 32 A 32 52 53 53 11 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT H 33 H 33 52 53 53 13 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 34 L 34 52 53 53 12 25 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 35 A 35 52 53 53 12 24 49 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 36 I 36 52 53 53 12 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 37 S 37 52 53 53 12 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT P 38 P 38 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT G 39 G 39 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 40 N 40 52 53 53 20 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 41 L 41 52 53 53 19 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 42 Y 42 52 53 53 12 41 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 43 Y 43 52 53 53 12 41 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT H 44 H 44 52 53 53 9 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 45 F 45 52 53 53 13 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 46 R 46 52 53 53 7 24 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 47 N 47 52 53 53 11 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 48 K 48 52 53 53 9 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 49 S 49 52 53 53 9 41 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 50 D 50 52 53 53 11 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 51 I 51 52 53 53 23 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 52 I 52 52 53 53 19 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Y 53 Y 53 52 53 53 22 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 54 E 54 52 53 53 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 55 I 55 52 53 53 9 20 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 LCS_AVERAGE LCS_A: 98.79 ( 96.37 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 25 43 51 52 52 52 52 52 52 53 53 53 53 53 53 53 53 53 53 53 GDT PERCENT_AT 47.17 81.13 96.23 98.11 98.11 98.11 98.11 98.11 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.36 0.60 0.75 0.78 0.78 0.78 0.78 0.78 0.78 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 GDT RMS_ALL_AT 1.39 1.29 1.26 1.26 1.26 1.26 1.26 1.26 1.26 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 1.22 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 3 M 3 7.191 4 0.627 0.627 8.593 17.619 8.810 LGA K 4 K 4 0.216 5 0.617 0.617 2.541 86.905 38.624 LGA T 5 T 5 0.245 3 0.030 0.030 0.278 100.000 57.143 LGA R 6 R 6 0.359 7 0.035 0.035 0.609 97.619 35.498 LGA D 7 D 7 0.406 4 0.052 0.052 0.521 97.619 48.810 LGA K 8 K 8 0.501 5 0.043 0.043 0.814 92.857 41.270 LGA I 9 I 9 0.821 4 0.027 0.027 0.860 90.476 45.238 LGA L 10 L 10 0.762 4 0.015 0.015 0.767 90.476 45.238 LGA L 11 L 11 0.485 4 0.015 0.015 0.609 92.857 46.429 LGA S 12 S 12 0.548 2 0.042 0.042 0.550 95.238 63.492 LGA S 13 S 13 0.393 2 0.045 0.045 0.484 100.000 66.667 LGA L 14 L 14 0.493 4 0.028 0.028 0.493 100.000 50.000 LGA E 15 E 15 0.390 5 0.029 0.029 0.422 100.000 44.444 LGA L 16 L 16 0.292 4 0.019 0.019 0.347 100.000 50.000 LGA F 17 F 17 0.326 7 0.044 0.044 0.335 100.000 36.364 LGA N 18 N 18 0.374 4 0.077 0.077 0.416 100.000 50.000 LGA D 19 D 19 0.812 4 0.020 0.020 0.986 90.476 45.238 LGA K 20 K 20 0.901 5 0.065 0.065 1.118 88.214 39.206 LGA G 21 G 21 0.802 0 0.087 0.087 0.802 90.476 90.476 LGA E 22 E 22 0.804 5 0.082 0.082 0.835 90.476 40.212 LGA R 23 R 23 1.229 7 0.050 0.050 1.229 85.952 31.255 LGA N 24 N 24 0.803 4 0.060 0.060 0.908 90.476 45.238 LGA I 25 I 25 0.305 4 0.026 0.026 0.508 95.238 47.619 LGA T 26 T 26 0.378 3 0.053 0.053 0.378 100.000 57.143 LGA T 27 T 27 0.263 3 0.016 0.016 0.398 100.000 57.143 LGA N 28 N 28 0.616 4 0.009 0.009 0.671 92.857 46.429 LGA H 29 H 29 0.351 6 0.024 0.024 0.425 100.000 40.000 LGA I 30 I 30 0.356 4 0.038 0.038 0.667 97.619 48.810 LGA A 31 A 31 0.731 1 0.014 0.014 0.979 92.857 74.286 LGA A 32 A 32 0.849 1 0.041 0.041 1.100 88.214 70.571 LGA H 33 H 33 0.605 6 0.125 0.125 1.483 88.214 35.286 LGA L 34 L 34 1.225 4 0.043 0.043 1.708 81.548 40.774 LGA A 35 A 35 1.728 1 0.042 0.042 1.728 77.143 61.714 LGA I 36 I 36 0.831 4 0.071 0.071 1.113 88.214 44.107 LGA S 37 S 37 0.792 2 0.033 0.033 0.834 92.857 61.905 LGA P 38 P 38 0.637 3 0.031 0.031 0.717 90.476 51.701 LGA G 39 G 39 0.604 0 0.025 0.025 0.697 92.857 92.857 LGA N 40 N 40 0.474 4 0.031 0.031 1.022 92.976 46.488 LGA L 41 L 41 0.548 4 0.032 0.032 0.985 90.476 45.238 LGA Y 42 Y 42 1.096 8 0.068 0.068 1.574 81.548 27.183 LGA Y 43 Y 43 1.430 8 0.052 0.052 1.662 79.286 26.429 LGA H 44 H 44 1.039 6 0.024 0.024 1.117 85.952 34.381 LGA F 45 F 45 0.672 7 0.148 0.148 1.061 88.214 32.078 LGA R 46 R 46 1.334 7 0.071 0.071 1.334 81.429 29.610 LGA N 47 N 47 0.944 4 0.042 0.042 0.997 90.476 45.238 LGA K 48 K 48 0.710 5 0.037 0.037 0.862 90.476 40.212 LGA S 49 S 49 1.090 2 0.062 0.062 1.090 88.214 58.810 LGA D 50 D 50 0.883 4 0.038 0.038 0.884 92.857 46.429 LGA I 51 I 51 0.500 4 0.040 0.040 0.608 95.238 47.619 LGA I 52 I 52 0.922 4 0.050 0.050 0.961 92.857 46.429 LGA Y 53 Y 53 0.519 8 0.051 0.051 0.584 92.857 30.952 LGA E 54 E 54 0.671 5 0.030 0.030 1.264 90.595 40.265 LGA I 55 I 55 1.473 4 0.019 0.019 1.817 77.143 38.571 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 429 212 49.42 53 SUMMARY(RMSD_GDC): 1.225 1.179 1.179 90.310 46.904 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 53 4.0 52 0.78 94.340 97.559 5.895 LGA_LOCAL RMSD: 0.782 Number of atoms: 52 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.255 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 1.225 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.037391 * X + -0.641527 * Y + 0.766189 * Z + -6.419643 Y_new = -0.226743 * X + 0.741280 * Y + 0.631737 * Z + -45.151787 Z_new = -0.973237 * X + -0.197349 * Y + -0.117745 * Z + 25.772255 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.407364 1.338919 -2.108736 [DEG: -80.6360 76.7144 -120.8216 ] ZXZ: 2.260310 1.688815 -1.770860 [DEG: 129.5062 96.7620 -101.4628 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0611AL285_1-D1 REMARK 2: T0611-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0611AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 53 4.0 52 0.78 97.559 1.22 REMARK ---------------------------------------------------------- MOLECULE T0611AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3lhqA ATOM 1 N MET 3 -6.481 -21.784 28.585 1.00 0.00 N ATOM 2 CA MET 3 -5.696 -20.698 28.027 1.00 0.00 C ATOM 3 C MET 3 -4.686 -21.241 26.986 1.00 0.00 C ATOM 4 O MET 3 -4.505 -20.624 25.968 1.00 0.00 O ATOM 5 N LYS 4 -4.083 -22.401 27.248 1.00 0.00 N ATOM 6 CA LYS 4 -3.035 -22.963 26.347 1.00 0.00 C ATOM 7 C LYS 4 -3.695 -23.332 25.007 1.00 0.00 C ATOM 8 O LYS 4 -3.119 -23.192 23.933 1.00 0.00 O ATOM 9 N THR 5 -4.903 -23.874 25.084 1.00 0.00 N ATOM 10 CA THR 5 -5.653 -24.207 23.851 1.00 0.00 C ATOM 11 C THR 5 -5.972 -22.946 23.082 1.00 0.00 C ATOM 12 O THR 5 -5.820 -22.873 21.836 1.00 0.00 O ATOM 13 N ARG 6 -6.460 -21.938 23.796 1.00 0.00 N ATOM 14 CA ARG 6 -6.711 -20.649 23.182 1.00 0.00 C ATOM 15 C ARG 6 -5.467 -20.118 22.477 1.00 0.00 C ATOM 16 O ARG 6 -5.560 -19.653 21.346 1.00 0.00 O ATOM 17 N ASP 7 -4.328 -20.179 23.141 1.00 0.00 N ATOM 18 CA ASP 7 -3.082 -19.681 22.557 1.00 0.00 C ATOM 19 CA ASP 7 -3.120 -19.654 22.528 1.00 0.00 C ATOM 20 C ASP 7 -2.771 -20.437 21.269 1.00 0.00 C ATOM 21 O ASP 7 -2.421 -19.837 20.271 1.00 0.00 O ATOM 22 N LYS 8 -2.930 -21.746 21.312 1.00 0.00 N ATOM 23 CA LYS 8 -2.629 -22.563 20.142 1.00 0.00 C ATOM 24 C LYS 8 -3.551 -22.192 18.972 1.00 0.00 C ATOM 25 O LYS 8 -3.092 -22.121 17.834 1.00 0.00 O ATOM 26 N ILE 9 -4.852 -21.987 19.251 1.00 0.00 N ATOM 27 CA ILE 9 -5.791 -21.596 18.220 1.00 0.00 C ATOM 28 C ILE 9 -5.323 -20.283 17.551 1.00 0.00 C ATOM 29 O ILE 9 -5.291 -20.149 16.345 1.00 0.00 O ATOM 30 N LEU 10 -4.937 -19.316 18.380 1.00 0.00 N ATOM 31 CA LEU 10 -4.498 -18.021 17.874 1.00 0.00 C ATOM 32 C LEU 10 -3.253 -18.155 16.988 1.00 0.00 C ATOM 33 O LEU 10 -3.214 -17.548 15.920 1.00 0.00 O ATOM 34 N LEU 11 -2.267 -18.950 17.431 1.00 0.00 N ATOM 35 CA LEU 11 -1.027 -19.142 16.681 1.00 0.00 C ATOM 36 C LEU 11 -1.275 -19.898 15.366 1.00 0.00 C ATOM 37 O LEU 11 -0.776 -19.515 14.273 1.00 0.00 O ATOM 38 N SER 12 -2.111 -20.921 15.425 1.00 0.00 N ATOM 39 CA SER 12 -2.500 -21.626 14.187 1.00 0.00 C ATOM 40 C SER 12 -3.291 -20.716 13.224 1.00 0.00 C ATOM 41 O SER 12 -3.026 -20.689 12.000 1.00 0.00 O ATOM 42 N SER 13 -4.202 -19.900 13.741 1.00 0.00 N ATOM 43 CA SER 13 -4.840 -18.893 12.913 1.00 0.00 C ATOM 44 C SER 13 -3.885 -17.953 12.222 1.00 0.00 C ATOM 45 O SER 13 -4.088 -17.657 11.012 1.00 0.00 O ATOM 46 N LEU 14 -2.908 -17.439 12.952 1.00 0.00 N ATOM 47 CA LEU 14 -1.942 -16.581 12.302 1.00 0.00 C ATOM 48 C LEU 14 -1.286 -17.256 11.134 1.00 0.00 C ATOM 49 O LEU 14 -1.107 -16.666 10.050 1.00 0.00 O ATOM 50 N GLU 15 -0.859 -18.490 11.353 1.00 0.00 N ATOM 51 CA GLU 15 -0.257 -19.266 10.273 1.00 0.00 C ATOM 52 CA GLU 15 -0.241 -19.272 10.273 1.00 0.00 C ATOM 53 C GLU 15 -1.149 -19.487 9.069 1.00 0.00 C ATOM 54 O GLU 15 -0.732 -19.273 7.898 1.00 0.00 O ATOM 55 N LEU 16 -2.404 -19.871 9.295 1.00 0.00 N ATOM 56 CA LEU 16 -3.350 -20.085 8.207 1.00 0.00 C ATOM 57 C LEU 16 -3.699 -18.783 7.494 1.00 0.00 C ATOM 58 O LEU 16 -3.681 -18.725 6.254 1.00 0.00 O ATOM 59 N PHE 17 -3.967 -17.734 8.267 1.00 0.00 N ATOM 60 CA PHE 17 -4.231 -16.430 7.671 1.00 0.00 C ATOM 61 C PHE 17 -3.076 -15.915 6.823 1.00 0.00 C ATOM 62 O PHE 17 -3.294 -15.352 5.744 1.00 0.00 O ATOM 63 N ASN 18 -1.834 -16.108 7.280 1.00 0.00 N ATOM 64 CA ASN 18 -0.682 -15.606 6.518 1.00 0.00 C ATOM 65 CA ASN 18 -0.689 -15.595 6.511 1.00 0.00 C ATOM 66 C ASN 18 -0.485 -16.383 5.209 1.00 0.00 C ATOM 67 O ASN 18 0.039 -15.846 4.191 1.00 0.00 O ATOM 68 N ASP 19 -0.908 -17.655 5.201 1.00 0.00 N ATOM 69 CA ASP 19 -0.745 -18.505 4.002 1.00 0.00 C ATOM 70 C ASP 19 -1.878 -18.325 3.005 1.00 0.00 C ATOM 71 O ASP 19 -1.653 -18.141 1.810 1.00 0.00 O ATOM 72 N LYS 20 -3.112 -18.294 3.477 1.00 0.00 N ATOM 73 CA LYS 20 -4.251 -18.294 2.518 1.00 0.00 C ATOM 74 C LYS 20 -5.144 -17.083 2.582 1.00 0.00 C ATOM 75 O LYS 20 -6.059 -16.991 1.764 1.00 0.00 O ATOM 76 N GLY 21 -4.848 -16.121 3.459 1.00 0.00 N ATOM 77 CA GLY 21 -5.665 -14.913 3.576 1.00 0.00 C ATOM 78 C GLY 21 -6.806 -15.110 4.556 1.00 0.00 C ATOM 79 O GLY 21 -7.242 -16.258 4.785 1.00 0.00 O ATOM 80 N GLU 22 -7.267 -14.019 5.163 1.00 0.00 N ATOM 81 CA GLU 22 -8.358 -14.043 6.101 1.00 0.00 C ATOM 82 C GLU 22 -9.694 -14.437 5.403 1.00 0.00 C ATOM 83 O GLU 22 -10.433 -15.285 5.909 1.00 0.00 O ATOM 84 N ARG 23 -9.957 -13.937 4.199 1.00 0.00 N ATOM 85 CA ARG 23 -11.243 -14.146 3.554 1.00 0.00 C ATOM 86 C ARG 23 -11.536 -15.654 3.315 1.00 0.00 C ATOM 87 O ARG 23 -12.638 -16.143 3.535 1.00 0.00 O ATOM 88 N ASN 24 -10.547 -16.376 2.826 1.00 0.00 N ATOM 89 CA ASN 24 -10.667 -17.817 2.553 1.00 0.00 C ATOM 90 C ASN 24 -10.605 -18.752 3.766 1.00 0.00 C ATOM 91 O ASN 24 -10.801 -19.963 3.642 1.00 0.00 O ATOM 92 N ILE 25 -10.277 -18.202 4.918 1.00 0.00 N ATOM 93 CA ILE 25 -10.052 -19.025 6.112 1.00 0.00 C ATOM 94 C ILE 25 -11.237 -18.975 7.028 1.00 0.00 C ATOM 95 O ILE 25 -11.649 -17.914 7.443 1.00 0.00 O ATOM 96 N THR 26 -11.830 -20.124 7.321 1.00 0.00 N ATOM 97 CA THR 26 -12.919 -20.176 8.307 1.00 0.00 C ATOM 98 C THR 26 -12.475 -20.611 9.718 1.00 0.00 C ATOM 99 O THR 26 -11.425 -21.244 9.904 1.00 0.00 O ATOM 100 N THR 27 -13.308 -20.245 10.693 1.00 0.00 N ATOM 101 CA THR 27 -13.149 -20.781 12.018 1.00 0.00 C ATOM 102 C THR 27 -13.084 -22.293 12.046 1.00 0.00 C ATOM 103 O THR 27 -12.308 -22.849 12.807 1.00 0.00 O ATOM 104 N ASN 28 -13.914 -22.973 11.276 1.00 0.00 N ATOM 105 CA ASN 28 -13.855 -24.432 11.239 1.00 0.00 C ATOM 106 C ASN 28 -12.490 -24.953 10.780 1.00 0.00 C ATOM 107 O ASN 28 -12.007 -25.949 11.327 1.00 0.00 O ATOM 108 N HIS 29 -11.907 -24.321 9.743 1.00 0.00 N ATOM 109 CA HIS 29 -10.595 -24.656 9.253 1.00 0.00 C ATOM 110 CA HIS 29 -10.595 -24.752 9.285 1.00 0.00 C ATOM 111 C HIS 29 -9.520 -24.486 10.322 1.00 0.00 C ATOM 112 O HIS 29 -8.641 -25.328 10.519 1.00 0.00 O ATOM 113 N ILE 30 -9.614 -23.363 11.006 1.00 0.00 N ATOM 114 CA ILE 30 -8.658 -23.039 12.077 1.00 0.00 C ATOM 115 C ILE 30 -8.780 -24.124 13.143 1.00 0.00 C ATOM 116 O ILE 30 -7.765 -24.576 13.666 1.00 0.00 O ATOM 117 N ALA 31 -10.004 -24.498 13.505 1.00 0.00 N ATOM 118 CA ALA 31 -10.220 -25.492 14.562 1.00 0.00 C ATOM 119 C ALA 31 -9.569 -26.835 14.164 1.00 0.00 C ATOM 120 O ALA 31 -8.869 -27.459 14.943 1.00 0.00 O ATOM 121 N ALA 32 -9.858 -27.278 12.949 1.00 0.00 N ATOM 122 CA ALA 32 -9.314 -28.542 12.431 1.00 0.00 C ATOM 123 C ALA 32 -7.781 -28.461 12.491 1.00 0.00 C ATOM 124 O ALA 32 -7.114 -29.382 12.959 1.00 0.00 O ATOM 125 N HIS 33 -7.199 -27.334 12.064 1.00 0.00 N ATOM 126 CA HIS 33 -5.725 -27.206 12.052 1.00 0.00 C ATOM 127 C HIS 33 -5.136 -27.170 13.468 1.00 0.00 C ATOM 128 O HIS 33 -4.003 -27.618 13.693 1.00 0.00 O ATOM 129 N LEU 34 -5.929 -26.619 14.403 1.00 0.00 N ATOM 130 CA LEU 34 -5.509 -26.504 15.776 1.00 0.00 C ATOM 131 C LEU 34 -5.753 -27.792 16.575 1.00 0.00 C ATOM 132 O LEU 34 -5.392 -27.820 17.751 1.00 0.00 O ATOM 133 N ALA 35 -6.401 -28.804 15.987 1.00 0.00 N ATOM 134 CA ALA 35 -6.758 -30.025 16.666 1.00 0.00 C ATOM 135 C ALA 35 -7.825 -29.861 17.739 1.00 0.00 C ATOM 136 O ALA 35 -7.806 -30.514 18.767 1.00 0.00 O ATOM 137 N ILE 36 -8.733 -28.930 17.530 1.00 0.00 N ATOM 138 CA ILE 36 -9.854 -28.751 18.439 1.00 0.00 C ATOM 139 C ILE 36 -11.149 -28.837 17.680 1.00 0.00 C ATOM 140 O ILE 36 -11.197 -28.769 16.431 1.00 0.00 O ATOM 141 N SER 37 -12.215 -29.010 18.425 1.00 0.00 N ATOM 142 CA SER 37 -13.499 -29.178 17.816 1.00 0.00 C ATOM 143 C SER 37 -14.079 -27.831 17.373 1.00 0.00 C ATOM 144 O SER 37 -13.701 -26.736 17.898 1.00 0.00 O ATOM 145 N PRO 38 -15.040 -27.909 16.468 1.00 0.00 N ATOM 146 CA PRO 38 -15.780 -26.723 16.088 1.00 0.00 C ATOM 147 C PRO 38 -16.483 -26.130 17.328 1.00 0.00 C ATOM 148 O PRO 38 -16.544 -24.914 17.491 1.00 0.00 O ATOM 149 N GLY 39 -17.047 -26.963 18.173 1.00 0.00 N ATOM 150 CA GLY 39 -17.660 -26.428 19.364 1.00 0.00 C ATOM 151 C GLY 39 -16.699 -25.628 20.215 1.00 0.00 C ATOM 152 O GLY 39 -17.099 -24.602 20.766 1.00 0.00 O ATOM 153 N ASN 40 -15.479 -26.142 20.423 1.00 0.00 N ATOM 154 CA ASN 40 -14.490 -25.455 21.191 1.00 0.00 C ATOM 155 C ASN 40 -14.133 -24.076 20.590 1.00 0.00 C ATOM 156 O ASN 40 -14.069 -23.084 21.302 1.00 0.00 O ATOM 157 N LEU 41 -13.895 -23.975 19.291 1.00 0.00 N ATOM 158 CA LEU 41 -13.458 -22.697 18.728 1.00 0.00 C ATOM 159 C LEU 41 -14.548 -21.632 18.836 1.00 0.00 C ATOM 160 O LEU 41 -14.227 -20.445 19.102 1.00 0.00 O ATOM 161 N TYR 42 -15.826 -22.050 18.696 1.00 0.00 N ATOM 162 CA TYR 42 -16.929 -21.113 18.733 1.00 0.00 C ATOM 163 C TYR 42 -17.277 -20.760 20.181 1.00 0.00 C ATOM 164 O TYR 42 -17.861 -19.688 20.432 1.00 0.00 O ATOM 165 N TYR 43 -16.855 -21.573 21.144 1.00 0.00 N ATOM 166 CA TYR 43 -16.871 -21.075 22.531 1.00 0.00 C ATOM 167 C TYR 43 -15.823 -20.010 22.765 1.00 0.00 C ATOM 168 O TYR 43 -16.108 -18.924 23.300 1.00 0.00 O ATOM 169 N HIS 44 -14.616 -20.254 22.277 1.00 0.00 N ATOM 170 CA HIS 44 -13.531 -19.307 22.438 1.00 0.00 C ATOM 171 C HIS 44 -13.772 -17.972 21.740 1.00 0.00 C ATOM 172 O HIS 44 -13.397 -16.932 22.281 1.00 0.00 O ATOM 173 N PHE 45 -14.371 -17.995 20.561 1.00 0.00 N ATOM 174 CA PHE 45 -14.432 -16.805 19.677 1.00 0.00 C ATOM 175 C PHE 45 -15.756 -16.655 18.988 1.00 0.00 C ATOM 176 O PHE 45 -16.355 -17.631 18.568 1.00 0.00 O ATOM 177 N ARG 46 -16.213 -15.420 18.884 1.00 0.00 N ATOM 178 CA ARG 46 -17.485 -15.165 18.239 1.00 0.00 C ATOM 179 C ARG 46 -17.376 -15.355 16.729 1.00 0.00 C ATOM 180 O ARG 46 -18.286 -15.858 16.089 1.00 0.00 O ATOM 181 N ASN 47 -16.221 -14.956 16.166 1.00 0.00 N ATOM 182 CA ASN 47 -16.007 -14.935 14.716 1.00 0.00 C ATOM 183 C ASN 47 -14.531 -14.684 14.416 1.00 0.00 C ATOM 184 O ASN 47 -13.745 -14.477 15.334 1.00 0.00 O ATOM 185 N LYS 48 -14.138 -14.742 13.153 1.00 0.00 N ATOM 186 CA LYS 48 -12.723 -14.671 12.854 1.00 0.00 C ATOM 187 C LYS 48 -12.165 -13.277 13.013 1.00 0.00 C ATOM 188 O LYS 48 -10.982 -13.125 13.362 1.00 0.00 O ATOM 189 N SER 49 -13.022 -12.275 12.869 1.00 0.00 N ATOM 190 CA SER 49 -12.609 -10.869 13.072 1.00 0.00 C ATOM 191 C SER 49 -12.227 -10.591 14.496 1.00 0.00 C ATOM 192 O SER 49 -11.243 -9.900 14.755 1.00 0.00 O ATOM 193 N ASP 50 -12.964 -11.175 15.422 1.00 0.00 N ATOM 194 CA ASP 50 -12.731 -11.013 16.838 1.00 0.00 C ATOM 195 C ASP 50 -11.469 -11.770 17.260 1.00 0.00 C ATOM 196 O ASP 50 -10.643 -11.312 18.084 1.00 0.00 O ATOM 197 N ILE 51 -11.271 -12.921 16.634 1.00 0.00 N ATOM 198 CA ILE 51 -10.064 -13.691 16.836 1.00 0.00 C ATOM 199 C ILE 51 -8.895 -12.847 16.377 1.00 0.00 C ATOM 200 O ILE 51 -7.898 -12.693 17.075 1.00 0.00 O ATOM 201 N ILE 52 -8.990 -12.297 15.183 1.00 0.00 N ATOM 202 CA ILE 52 -7.835 -11.530 14.662 1.00 0.00 C ATOM 203 C ILE 52 -7.563 -10.282 15.505 1.00 0.00 C ATOM 204 O ILE 52 -6.421 -9.898 15.690 1.00 0.00 O ATOM 205 N TYR 53 -8.627 -9.618 15.943 1.00 0.00 N ATOM 206 CA TYR 53 -8.508 -8.434 16.813 1.00 0.00 C ATOM 207 C TYR 53 -7.776 -8.730 18.065 1.00 0.00 C ATOM 208 O TYR 53 -6.977 -7.903 18.552 1.00 0.00 O ATOM 209 N GLU 54 -8.098 -9.881 18.662 1.00 0.00 N ATOM 210 CA GLU 54 -7.426 -10.301 19.857 1.00 0.00 C ATOM 211 C GLU 54 -5.897 -10.417 19.706 1.00 0.00 C ATOM 212 O GLU 54 -5.155 -9.960 20.588 1.00 0.00 O ATOM 213 N ILE 55 -5.430 -11.032 18.629 1.00 0.00 N ATOM 214 CA ILE 55 -4.013 -11.136 18.377 1.00 0.00 C ATOM 215 C ILE 55 -3.443 -9.732 18.255 1.00 0.00 C ATOM 216 O ILE 55 -2.395 -9.426 18.829 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 216 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 25.44 98.1 104 100.0 104 ARMSMC SECONDARY STRUCTURE . . 7.62 100.0 76 100.0 76 ARMSMC SURFACE . . . . . . . . 29.73 97.3 74 100.0 74 ARMSMC BURIED . . . . . . . . 7.95 100.0 30 100.0 30 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 47 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 35 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 26 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.19 (Number of atoms: 57) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.19 57 107.5 53 CRMSCA CRN = ALL/NP . . . . . 0.0209 CRMSCA SECONDARY STRUCTURE . . 0.71 42 110.5 38 CRMSCA SURFACE . . . . . . . . 1.32 42 110.5 38 CRMSCA BURIED . . . . . . . . 0.68 15 100.0 15 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.17 216 82.1 263 CRMSMC SECONDARY STRUCTURE . . 0.74 156 82.5 189 CRMSMC SURFACE . . . . . . . . 1.30 156 83.0 188 CRMSMC BURIED . . . . . . . . 0.71 60 80.0 75 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 217 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 183 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 162 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 156 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 61 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.17 216 50.3 429 CRMSALL SECONDARY STRUCTURE . . 0.74 156 49.7 314 CRMSALL SURFACE . . . . . . . . 1.30 156 50.6 308 CRMSALL BURIED . . . . . . . . 0.71 60 49.6 121 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.839 1.000 0.500 57 107.5 53 ERRCA SECONDARY STRUCTURE . . 0.663 1.000 0.500 42 110.5 38 ERRCA SURFACE . . . . . . . . 0.916 1.000 0.500 42 110.5 38 ERRCA BURIED . . . . . . . . 0.626 1.000 0.500 15 100.0 15 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.853 1.000 0.500 216 82.1 263 ERRMC SECONDARY STRUCTURE . . 0.690 1.000 0.500 156 82.5 189 ERRMC SURFACE . . . . . . . . 0.931 1.000 0.500 156 83.0 188 ERRMC BURIED . . . . . . . . 0.651 1.000 0.500 60 80.0 75 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 217 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 183 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 162 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 156 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 61 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.853 1.000 0.500 216 50.3 429 ERRALL SECONDARY STRUCTURE . . 0.690 1.000 0.500 156 49.7 314 ERRALL SURFACE . . . . . . . . 0.931 1.000 0.500 156 50.6 308 ERRALL BURIED . . . . . . . . 0.651 1.000 0.500 60 49.6 121 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 41 52 52 52 53 53 53 DISTCA CA (P) 77.36 98.11 98.11 98.11 100.00 53 DISTCA CA (RMS) 0.66 0.82 0.82 0.82 1.23 DISTCA ALL (N) 163 207 208 210 212 212 429 DISTALL ALL (P) 38.00 48.25 48.48 48.95 49.42 429 DISTALL ALL (RMS) 0.66 0.82 0.83 0.94 1.18 DISTALL END of the results output