####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 89 ( 439), selected 89 , name T0608TS477_1-D1 # Molecule2: number of CA atoms 89 ( 739), selected 89 , name T0608-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0608TS477_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 84 - 116 4.87 15.80 LONGEST_CONTINUOUS_SEGMENT: 33 85 - 117 4.86 15.99 LCS_AVERAGE: 27.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 89 - 103 1.96 16.95 LCS_AVERAGE: 10.21 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 90 - 102 0.91 17.76 LCS_AVERAGE: 7.74 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 89 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 29 V 29 3 5 15 0 3 3 4 6 8 8 8 11 12 14 15 17 23 27 28 36 40 42 44 LCS_GDT S 30 S 30 3 5 22 0 3 3 4 6 8 8 10 14 17 20 24 27 28 32 35 38 40 42 44 LCS_GDT G 31 G 31 3 5 22 0 3 4 4 6 8 9 11 14 17 20 24 27 29 33 35 38 40 42 44 LCS_GDT F 32 F 32 3 5 22 3 3 4 4 5 6 8 13 15 15 18 18 22 28 33 35 38 40 42 44 LCS_GDT Q 33 Q 33 8 9 22 4 6 7 8 9 9 11 13 15 15 18 18 21 28 33 35 38 40 42 44 LCS_GDT R 34 R 34 8 9 22 4 6 7 8 9 9 12 13 15 15 18 24 27 28 33 35 38 40 42 44 LCS_GDT L 35 L 35 8 9 22 4 6 7 8 9 9 11 13 15 15 18 18 21 23 29 29 31 36 38 40 LCS_GDT Q 36 Q 36 8 9 22 4 6 7 8 9 9 11 13 15 15 18 18 21 22 29 29 31 33 38 40 LCS_GDT K 37 K 37 8 9 22 4 6 7 8 9 9 11 13 15 15 18 18 21 23 29 29 31 33 40 40 LCS_GDT P 38 P 38 8 9 22 4 6 7 8 9 9 11 13 15 15 18 18 21 23 29 29 31 36 40 42 LCS_GDT V 39 V 39 8 9 22 3 6 7 8 9 10 12 13 16 17 18 22 27 28 33 35 38 40 42 44 LCS_GDT V 40 V 40 8 9 22 3 4 7 8 10 11 14 14 16 17 20 24 27 30 34 35 38 40 42 44 LCS_GDT S 41 S 41 3 9 22 3 4 5 5 10 11 14 15 19 24 27 28 30 32 34 35 38 40 42 44 LCS_GDT Q 42 Q 42 5 7 22 4 4 5 5 6 9 20 21 24 26 28 29 30 32 34 35 37 40 42 44 LCS_GDT P 43 P 43 5 7 22 4 4 5 5 10 16 20 22 24 26 28 29 30 32 34 35 36 39 42 43 LCS_GDT D 44 D 44 5 7 22 4 4 5 5 8 8 8 12 13 15 16 19 22 25 31 34 36 38 40 42 LCS_GDT F 45 F 45 5 7 22 4 4 5 5 8 8 8 12 13 16 19 20 23 25 30 31 35 37 39 41 LCS_GDT R 46 R 46 5 7 22 3 4 5 6 9 12 14 15 21 25 27 28 30 32 36 38 39 40 40 41 LCS_GDT R 47 R 47 4 7 22 3 4 4 6 8 10 11 14 19 20 22 26 29 33 36 38 39 40 40 41 LCS_GDT Q 48 Q 48 4 6 22 3 4 4 6 8 10 12 14 16 19 22 26 29 33 36 38 39 40 40 41 LCS_GDT P 49 P 49 4 6 22 3 4 4 6 9 10 11 14 16 19 21 26 29 33 36 38 39 40 40 41 LCS_GDT V 50 V 50 4 9 22 3 4 4 6 8 10 11 14 16 19 21 25 29 33 36 38 39 40 40 41 LCS_GDT S 51 S 51 9 10 22 8 8 9 9 9 10 11 14 17 19 22 26 29 33 36 38 39 40 40 41 LCS_GDT E 52 E 52 9 10 21 8 8 9 9 9 9 9 11 11 11 22 26 29 33 36 38 39 40 40 41 LCS_GDT T 53 T 53 9 10 19 8 8 9 9 9 9 9 11 11 13 14 26 29 33 36 38 39 40 40 41 LCS_GDT M 54 M 54 9 10 19 8 8 9 9 9 9 11 14 17 19 22 26 29 33 36 38 39 40 40 41 LCS_GDT Q 55 Q 55 9 10 19 8 8 9 9 9 9 11 14 15 17 19 21 23 33 36 38 39 40 40 41 LCS_GDT V 56 V 56 9 10 19 8 8 9 9 9 9 9 11 11 14 16 20 23 25 36 38 39 40 40 41 LCS_GDT Y 57 Y 57 9 10 19 8 8 9 9 9 9 11 13 17 19 22 26 29 33 36 38 39 40 40 41 LCS_GDT L 58 L 58 9 10 19 8 8 9 9 9 9 11 14 15 17 19 21 23 26 28 37 39 40 40 41 LCS_GDT K 59 K 59 9 10 19 3 4 9 9 9 10 11 14 15 17 19 21 23 26 28 31 34 37 39 41 LCS_GDT Q 60 Q 60 4 10 19 3 4 4 5 8 10 11 14 15 17 19 21 23 26 28 31 34 37 39 40 LCS_GDT A 61 A 61 4 5 19 3 4 4 5 8 10 11 14 15 17 19 21 23 26 28 31 34 37 39 40 LCS_GDT A 62 A 62 3 5 19 3 3 4 5 8 10 11 14 15 17 19 21 23 25 26 31 34 36 39 40 LCS_GDT D 63 D 63 3 4 19 3 3 4 4 4 5 8 10 13 14 16 19 22 25 26 31 34 36 39 40 LCS_GDT P 64 P 64 4 4 19 3 3 5 5 6 6 8 10 13 14 16 19 22 25 26 29 31 33 36 40 LCS_GDT G 65 G 65 4 4 16 3 3 5 5 6 6 8 10 13 14 16 19 22 25 26 28 29 31 33 35 LCS_GDT R 66 R 66 4 4 14 3 3 5 5 6 6 7 10 12 14 16 19 22 25 26 28 29 31 33 35 LCS_GDT D 67 D 67 4 4 14 0 3 4 4 6 6 7 9 12 14 16 19 22 25 26 28 29 31 33 35 LCS_GDT V 68 V 68 3 3 14 1 3 3 4 5 5 6 9 11 14 16 19 20 22 25 28 29 31 33 35 LCS_GDT G 69 G 69 3 3 14 1 3 3 4 5 5 6 9 12 14 16 19 22 25 26 28 29 31 33 35 LCS_GDT L 70 L 70 3 3 14 0 3 3 4 5 5 6 7 10 13 16 19 21 25 26 28 29 31 33 35 LCS_GDT Y 71 Y 71 3 3 14 1 3 3 3 4 4 6 7 7 12 13 17 20 21 23 26 28 31 33 35 LCS_GDT W 72 W 72 3 3 14 0 3 3 3 4 4 6 7 10 13 16 19 22 25 26 28 29 31 33 35 LCS_GDT M 73 M 73 4 6 13 3 4 4 5 6 6 8 10 11 11 14 17 22 25 26 28 29 31 33 35 LCS_GDT A 74 A 74 4 6 13 3 4 4 5 6 6 8 10 11 12 13 14 16 19 25 26 28 31 33 35 LCS_GDT T 75 T 75 4 6 22 3 4 4 5 6 9 9 10 11 11 14 18 21 25 26 28 31 33 38 40 LCS_GDT D 76 D 76 4 6 22 3 4 4 5 6 6 8 10 11 11 15 18 22 25 26 28 31 33 38 40 LCS_GDT F 77 F 77 4 6 22 3 3 4 5 6 6 8 10 11 16 18 20 20 21 26 28 31 33 36 40 LCS_GDT E 78 E 78 4 6 23 3 3 4 6 8 10 11 14 15 17 18 20 21 27 33 35 38 40 42 44 LCS_GDT N 79 N 79 4 5 23 3 3 4 6 8 10 11 14 15 17 18 20 21 23 29 29 31 37 40 40 LCS_GDT R 80 R 80 4 8 23 3 4 5 5 8 10 11 14 15 17 18 20 22 27 33 35 38 40 42 44 LCS_GDT R 81 R 81 4 8 23 3 4 5 5 7 9 11 14 15 17 20 24 27 28 33 35 38 40 42 44 LCS_GDT F 82 F 82 4 8 23 3 4 5 5 7 7 11 14 15 17 18 24 27 28 33 35 38 40 42 44 LCS_GDT P 83 P 83 5 8 23 4 5 5 6 8 9 11 14 14 17 18 24 27 28 33 35 38 40 42 44 LCS_GDT G 84 G 84 5 8 33 4 5 5 6 8 10 11 14 15 18 23 28 30 31 34 35 38 40 42 44 LCS_GDT K 85 K 85 5 8 33 4 5 5 6 8 10 14 15 23 26 28 29 30 32 34 35 38 40 42 44 LCS_GDT V 86 V 86 5 8 33 4 5 5 6 8 10 13 15 16 17 18 21 25 32 34 35 38 40 42 44 LCS_GDT S 87 S 87 5 8 33 4 5 7 11 12 14 15 15 16 17 19 28 30 32 34 35 38 40 42 44 LCS_GDT P 88 P 88 4 8 33 4 4 4 6 8 10 11 14 15 17 18 23 26 30 34 35 38 40 42 44 LCS_GDT S 89 S 89 4 15 33 4 4 8 11 13 14 20 22 24 26 28 29 30 32 34 35 38 40 42 44 LCS_GDT G 90 G 90 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 32 34 35 38 40 42 44 LCS_GDT F 91 F 91 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 32 35 38 39 40 42 44 LCS_GDT Q 92 Q 92 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT K 93 K 93 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 32 35 37 39 40 42 44 LCS_GDT L 94 L 94 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT Y 95 Y 95 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT R 96 R 96 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT Q 97 Q 97 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT W 98 W 98 13 15 33 9 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT R 99 R 99 13 15 33 8 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT N 100 N 100 13 15 33 8 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT Q 101 Q 101 13 15 33 4 10 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT T 102 T 102 13 15 33 4 5 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 43 LCS_GDT G 103 G 103 4 15 33 4 4 6 9 13 15 19 22 24 26 28 29 30 33 36 38 39 40 42 43 LCS_GDT W 104 W 104 4 6 33 3 3 4 4 5 6 7 11 13 17 19 21 26 30 36 38 39 40 40 41 LCS_GDT D 105 D 105 4 12 33 3 3 6 9 13 15 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT A 106 A 106 10 12 33 5 10 10 11 11 15 18 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT Y 107 Y 107 10 12 33 5 10 10 11 11 12 12 13 17 22 27 29 30 33 36 38 39 40 42 44 LCS_GDT V 108 V 108 10 12 33 5 10 10 11 11 12 16 20 22 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT Q 109 Q 109 10 12 33 7 10 10 11 12 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT S 110 S 110 10 12 33 7 10 10 11 11 12 14 20 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT C 111 C 111 10 12 33 7 10 10 11 11 14 18 22 24 26 28 29 30 32 36 38 39 40 42 44 LCS_GDT R 112 R 112 10 12 33 7 10 10 11 12 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT A 113 A 113 10 12 33 7 10 10 11 11 14 17 20 23 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT I 114 I 114 10 12 33 7 10 10 11 11 12 14 20 23 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT W 115 W 115 10 12 33 7 10 10 11 12 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 LCS_GDT N 116 N 116 8 12 33 3 4 8 11 11 14 15 17 20 21 24 26 29 33 36 38 39 40 40 41 LCS_GDT D 117 D 117 5 12 33 3 4 6 9 10 15 16 16 17 18 22 26 29 33 36 38 39 40 40 41 LCS_AVERAGE LCS_A: 15.30 ( 7.74 10.21 27.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 11 12 13 13 16 20 22 24 26 28 29 30 33 36 38 39 40 42 44 GDT PERCENT_AT 10.11 12.36 13.48 14.61 14.61 17.98 22.47 24.72 26.97 29.21 31.46 32.58 33.71 37.08 40.45 42.70 43.82 44.94 47.19 49.44 GDT RMS_LOCAL 0.28 0.43 0.57 0.91 0.91 2.20 2.61 2.76 2.97 3.21 3.45 3.60 3.73 4.86 5.14 7.40 7.42 6.06 6.21 6.71 GDT RMS_ALL_AT 17.95 17.66 17.58 17.76 17.76 16.01 15.93 16.05 16.02 15.89 15.88 15.92 15.96 18.65 18.65 18.80 18.65 16.01 15.90 16.56 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 29 V 29 21.812 2 0.596 0.590 23.698 0.000 0.000 LGA S 30 S 30 16.785 1 0.647 0.608 18.906 0.000 0.000 LGA G 31 G 31 13.699 0 0.529 0.529 17.149 0.000 0.000 LGA F 32 F 32 16.683 6 0.598 0.583 18.511 0.000 0.000 LGA Q 33 Q 33 20.838 4 0.566 0.528 22.368 0.000 0.000 LGA R 34 R 34 16.737 6 0.032 0.033 18.884 0.000 0.000 LGA L 35 L 35 21.562 3 0.134 0.136 25.025 0.000 0.000 LGA Q 36 Q 36 27.081 4 0.176 0.199 29.032 0.000 0.000 LGA K 37 K 37 24.629 4 0.034 0.061 24.796 0.000 0.000 LGA P 38 P 38 21.895 2 0.324 0.344 23.309 0.000 0.000 LGA V 39 V 39 14.530 2 0.645 0.601 17.337 0.000 0.000 LGA V 40 V 40 11.434 2 0.609 0.592 12.599 1.905 1.088 LGA S 41 S 41 9.557 1 0.713 0.660 11.479 3.095 2.063 LGA Q 42 Q 42 5.129 4 0.618 0.587 6.111 27.976 15.926 LGA P 43 P 43 3.299 2 0.036 0.044 5.446 37.738 28.707 LGA D 44 D 44 7.940 3 0.040 0.049 9.974 6.905 3.631 LGA F 45 F 45 8.845 6 0.213 0.222 8.845 4.405 1.861 LGA R 46 R 46 5.774 6 0.613 0.607 8.023 14.405 9.177 LGA R 47 R 47 10.515 6 0.140 0.146 13.531 0.714 0.260 LGA Q 48 Q 48 12.487 4 0.378 0.411 13.816 0.000 0.000 LGA P 49 P 49 14.298 2 0.153 0.206 14.459 0.000 0.000 LGA V 50 V 50 15.879 2 0.618 0.560 17.322 0.000 0.000 LGA S 51 S 51 17.882 1 0.579 0.574 19.339 0.000 0.000 LGA E 52 E 52 20.662 4 0.035 0.048 22.188 0.000 0.000 LGA T 53 T 53 18.369 2 0.032 0.039 19.024 0.000 0.000 LGA M 54 M 54 17.168 3 0.051 0.065 18.124 0.000 0.000 LGA Q 55 Q 55 20.275 4 0.055 0.052 21.698 0.000 0.000 LGA V 56 V 56 20.549 2 0.019 0.017 20.763 0.000 0.000 LGA Y 57 Y 57 17.129 7 0.012 0.021 18.051 0.000 0.000 LGA L 58 L 58 19.786 3 0.636 0.601 21.737 0.000 0.000 LGA K 59 K 59 22.868 4 0.106 0.124 25.954 0.000 0.000 LGA Q 60 Q 60 27.266 4 0.132 0.132 28.369 0.000 0.000 LGA A 61 A 61 24.543 0 0.595 0.592 26.009 0.000 0.000 LGA A 62 A 62 24.538 0 0.296 0.295 24.538 0.000 0.000 LGA D 63 D 63 23.147 3 0.183 0.199 24.026 0.000 0.000 LGA P 64 P 64 22.184 2 0.634 0.604 22.932 0.000 0.000 LGA G 65 G 65 25.150 0 0.280 0.280 25.150 0.000 0.000 LGA R 66 R 66 22.736 6 0.598 0.585 23.483 0.000 0.000 LGA D 67 D 67 20.914 3 0.593 0.600 22.272 0.000 0.000 LGA V 68 V 68 22.821 2 0.606 0.597 23.521 0.000 0.000 LGA G 69 G 69 25.232 0 0.594 0.594 25.232 0.000 0.000 LGA L 70 L 70 21.218 3 0.614 0.598 22.535 0.000 0.000 LGA Y 71 Y 71 22.338 7 0.592 0.594 23.654 0.000 0.000 LGA W 72 W 72 23.906 9 0.624 0.599 26.246 0.000 0.000 LGA M 73 M 73 25.687 3 0.595 0.594 25.687 0.000 0.000 LGA A 74 A 74 24.126 0 0.086 0.092 24.783 0.000 0.000 LGA T 75 T 75 24.167 2 0.575 0.543 25.441 0.000 0.000 LGA D 76 D 76 25.376 3 0.440 0.462 27.891 0.000 0.000 LGA F 77 F 77 26.430 6 0.449 0.429 27.617 0.000 0.000 LGA E 78 E 78 22.801 4 0.563 0.554 24.315 0.000 0.000 LGA N 79 N 79 27.409 3 0.107 0.113 29.686 0.000 0.000 LGA R 80 R 80 22.853 6 0.675 0.619 24.118 0.000 0.000 LGA R 81 R 81 16.830 6 0.107 0.143 19.481 0.000 0.000 LGA F 82 F 82 13.786 6 0.159 0.223 13.979 0.000 0.000 LGA P 83 P 83 13.726 2 0.636 0.617 15.810 0.119 0.068 LGA G 84 G 84 8.290 0 0.060 0.060 10.589 4.881 4.881 LGA K 85 K 85 6.435 4 0.036 0.046 7.448 14.405 8.307 LGA V 86 V 86 10.758 2 0.251 0.287 13.217 0.357 0.204 LGA S 87 S 87 10.084 1 0.042 0.066 10.084 0.238 0.952 LGA P 88 P 88 10.937 2 0.040 0.040 12.232 2.381 1.361 LGA S 89 S 89 3.703 1 0.031 0.038 6.281 43.690 35.317 LGA G 90 G 90 2.388 0 0.522 0.522 3.112 61.071 61.071 LGA F 91 F 91 3.088 6 0.029 0.031 4.238 59.167 24.892 LGA Q 92 Q 92 2.490 4 0.056 0.060 3.003 64.881 34.392 LGA K 93 K 93 1.962 4 0.031 0.045 2.822 77.143 40.635 LGA L 94 L 94 1.664 3 0.020 0.026 2.915 79.286 46.786 LGA Y 95 Y 95 2.768 7 0.051 0.056 4.002 59.286 22.857 LGA R 96 R 96 3.485 6 0.102 0.110 4.056 50.119 21.602 LGA Q 97 Q 97 2.176 4 0.082 0.100 2.742 73.095 38.836 LGA W 98 W 98 1.051 9 0.038 0.046 2.119 83.690 28.537 LGA R 99 R 99 3.071 6 0.109 0.112 3.908 52.024 22.857 LGA N 100 N 100 3.093 3 0.514 0.469 4.003 59.167 34.226 LGA Q 101 Q 101 0.937 4 0.037 0.038 1.752 83.810 47.302 LGA T 102 T 102 1.436 2 0.074 0.076 2.023 79.405 54.626 LGA G 103 G 103 3.373 0 0.647 0.647 5.675 40.000 40.000 LGA W 104 W 104 7.845 9 0.223 0.224 10.109 12.857 3.673 LGA D 105 D 105 3.706 3 0.547 0.571 4.665 42.738 25.298 LGA A 106 A 106 3.883 0 0.616 0.602 5.437 48.333 43.905 LGA Y 107 Y 107 6.819 7 0.039 0.037 8.370 17.262 6.151 LGA V 108 V 108 5.511 2 0.049 0.057 6.359 34.048 21.905 LGA Q 109 Q 109 1.182 4 0.112 0.112 2.583 67.024 38.836 LGA S 110 S 110 4.919 1 0.013 0.024 6.937 37.262 27.063 LGA C 111 C 111 3.855 1 0.022 0.020 5.210 56.548 42.063 LGA R 112 R 112 2.255 6 0.049 0.050 3.905 61.667 26.364 LGA A 113 A 113 5.077 0 0.039 0.040 6.847 27.738 26.476 LGA I 114 I 114 5.567 3 0.010 0.013 5.907 26.429 15.893 LGA W 115 W 115 2.358 9 0.028 0.037 5.520 43.690 17.109 LGA N 116 N 116 8.599 3 0.138 0.152 12.158 6.071 3.095 LGA D 117 D 117 12.515 3 0.142 0.132 14.448 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 89 356 356 100.00 739 439 59.40 89 SUMMARY(RMSD_GDC): 15.083 14.975 15.111 17.607 10.452 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 89 89 4.0 22 2.76 23.596 19.999 0.770 LGA_LOCAL RMSD: 2.758 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.051 Number of assigned atoms: 89 Std_ASGN_ATOMS RMSD: 15.083 Standard rmsd on all 89 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.647730 * X + -0.027665 * Y + -0.761368 * Z + 23.086824 Y_new = 0.404692 * X + -0.859192 * Y + -0.313070 * Z + 60.928818 Z_new = -0.645500 * X + -0.510904 * Y + 0.567720 * Z + 16.163771 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.583148 0.701678 -0.732772 [DEG: 148.0035 40.2032 -41.9848 ] ZXZ: -1.180677 0.967063 -2.240324 [DEG: -67.6478 55.4086 -128.3611 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0608TS477_1-D1 REMARK 2: T0608-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0608TS477_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 89 89 4.0 22 2.76 19.999 15.08 REMARK ---------------------------------------------------------- MOLECULE T0608TS477_1-D1 USER MOD reduce.3.15.091106 removed 114 hydrogens (0 hets) REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFR REMARK TARGET T0608 REMARK MODEL 1 REMARK PARENT N/A ATOM 166 N VAL 29 33.315 27.406 23.004 1.00 0.00 N ATOM 168 CA VAL 29 32.746 27.135 24.320 1.00 0.00 C ATOM 169 CB VAL 29 33.708 26.310 25.192 1.00 0.00 C ATOM 170 C VAL 29 32.399 28.430 25.048 1.00 0.00 C ATOM 171 O VAL 29 31.269 28.612 25.504 1.00 0.00 O ATOM 172 N SER 30 33.375 29.326 25.151 1.00 0.00 N ATOM 174 CA SER 30 33.174 30.604 25.822 1.00 0.00 C ATOM 175 CB SER 30 34.513 31.312 26.037 1.00 0.00 C ATOM 176 C SER 30 32.240 31.506 25.022 1.00 0.00 C ATOM 177 O SER 30 31.581 32.385 25.580 1.00 0.00 O ATOM 178 N GLY 31 32.183 31.285 23.713 1.00 0.00 N ATOM 180 CA GLY 31 31.324 32.090 22.866 1.00 0.00 C ATOM 181 C GLY 31 31.601 31.879 21.391 1.00 0.00 C ATOM 182 O GLY 31 32.388 31.010 21.015 1.00 0.00 O ATOM 183 N PHE 32 30.950 32.679 20.551 1.00 0.00 N ATOM 185 CA PHE 32 31.127 32.580 19.107 1.00 0.00 C ATOM 186 CB PHE 32 30.098 33.448 18.380 1.00 0.00 C ATOM 187 C PHE 32 32.533 32.998 18.693 1.00 0.00 C ATOM 188 O PHE 32 33.052 34.012 19.160 1.00 0.00 O ATOM 189 N GLN 33 33.147 32.209 17.816 1.00 0.00 N ATOM 191 CA GLN 33 34.494 32.497 17.338 1.00 0.00 C ATOM 192 CB GLN 33 35.249 31.198 17.052 1.00 0.00 C ATOM 193 C GLN 33 34.461 33.359 16.080 1.00 0.00 C ATOM 194 O GLN 33 34.388 32.843 14.965 1.00 0.00 O ATOM 195 N ARG 34 34.516 34.673 16.268 1.00 0.00 N ATOM 197 CA ARG 34 34.493 35.608 15.149 1.00 0.00 C ATOM 198 CB ARG 34 34.437 37.051 15.657 1.00 0.00 C ATOM 199 C ARG 34 35.714 35.427 14.255 1.00 0.00 C ATOM 200 O ARG 34 35.610 35.471 13.030 1.00 0.00 O ATOM 201 N LEU 35 36.871 35.222 14.876 1.00 0.00 N ATOM 203 CA LEU 35 38.114 35.033 14.137 1.00 0.00 C ATOM 204 CB LEU 35 39.314 35.084 15.085 1.00 0.00 C ATOM 205 C LEU 35 38.111 33.707 13.384 1.00 0.00 C ATOM 206 O LEU 35 38.522 33.639 12.225 1.00 0.00 O ATOM 207 N GLN 36 37.649 32.655 14.050 1.00 0.00 N ATOM 209 CA GLN 36 37.593 31.329 13.446 1.00 0.00 C ATOM 210 CB GLN 36 37.015 30.313 14.433 1.00 0.00 C ATOM 211 C GLN 36 36.756 31.340 12.172 1.00 0.00 C ATOM 212 O GLN 36 37.154 30.783 11.150 1.00 0.00 O ATOM 213 N LYS 37 35.590 31.978 12.241 1.00 0.00 N ATOM 215 CA LYS 37 34.695 32.062 11.095 1.00 0.00 C ATOM 216 CB LYS 37 33.244 32.211 11.559 1.00 0.00 C ATOM 217 C LYS 37 35.065 33.231 10.189 1.00 0.00 C ATOM 218 O LYS 37 35.812 34.125 10.587 1.00 0.00 O ATOM 219 N PRO 38 34.540 33.232 8.955 1.00 0.00 N ATOM 220 CA PRO 38 34.813 34.295 7.981 1.00 0.00 C ATOM 221 CB PRO 38 34.723 33.564 6.640 1.00 0.00 C ATOM 222 C PRO 38 33.824 35.448 8.110 1.00 0.00 C ATOM 223 O PRO 38 32.990 35.663 7.230 1.00 0.00 O ATOM 224 N VAL 39 33.922 36.187 9.211 1.00 0.00 N ATOM 226 CA VAL 39 33.038 37.318 9.455 1.00 0.00 C ATOM 227 CB VAL 39 32.523 37.330 10.907 1.00 0.00 C ATOM 228 C VAL 39 33.740 38.641 9.164 1.00 0.00 C ATOM 229 O VAL 39 34.904 38.826 9.516 1.00 0.00 O ATOM 230 N VAL 40 33.023 39.557 8.522 1.00 0.00 N ATOM 232 CA VAL 40 33.576 40.862 8.182 1.00 0.00 C ATOM 233 CB VAL 40 33.587 41.092 6.659 1.00 0.00 C ATOM 234 C VAL 40 32.788 41.984 8.851 1.00 0.00 C ATOM 235 O VAL 40 31.592 42.148 8.607 1.00 0.00 O ATOM 236 N SER 41 33.467 42.756 9.695 1.00 0.00 N ATOM 238 CA SER 41 32.832 43.864 10.399 1.00 0.00 C ATOM 239 CB SER 41 33.715 44.339 11.554 1.00 0.00 C ATOM 240 C SER 41 32.552 45.028 9.454 1.00 0.00 C ATOM 241 O SER 41 33.001 45.033 8.309 1.00 0.00 O ATOM 242 N GLN 42 31.810 46.015 9.945 1.00 0.00 N ATOM 244 CA GLN 42 31.469 47.187 9.147 1.00 0.00 C ATOM 245 CB GLN 42 30.340 47.977 9.811 1.00 0.00 C ATOM 246 C GLN 42 32.680 48.092 8.949 1.00 0.00 C ATOM 247 O GLN 42 32.898 48.626 7.861 1.00 0.00 O ATOM 248 N PRO 43 33.482 48.273 10.009 1.00 0.00 N ATOM 249 CA PRO 43 34.679 49.117 9.960 1.00 0.00 C ATOM 250 CB PRO 43 35.448 48.699 11.214 1.00 0.00 C ATOM 251 C PRO 43 35.467 48.908 8.670 1.00 0.00 C ATOM 252 O PRO 43 35.950 49.865 8.067 1.00 0.00 O ATOM 253 N ASP 44 35.592 47.652 8.257 1.00 0.00 N ATOM 255 CA ASP 44 36.320 47.316 7.039 1.00 0.00 C ATOM 256 CB ASP 44 36.505 45.801 6.927 1.00 0.00 C ATOM 257 C ASP 44 35.598 47.837 5.801 1.00 0.00 C ATOM 258 O ASP 44 36.224 48.360 4.880 1.00 0.00 O ATOM 259 N PHE 45 34.277 47.692 5.789 1.00 0.00 N ATOM 261 CA PHE 45 33.467 48.148 4.665 1.00 0.00 C ATOM 262 CB PHE 45 32.527 47.034 4.196 1.00 0.00 C ATOM 263 C PHE 45 32.653 49.382 5.039 1.00 0.00 C ATOM 264 O PHE 45 31.963 49.962 4.200 1.00 0.00 O ATOM 265 N ARG 46 32.738 49.779 6.304 1.00 0.00 N ATOM 267 CA ARG 46 32.009 50.945 6.792 1.00 0.00 C ATOM 268 CB ARG 46 30.935 50.524 7.796 1.00 0.00 C ATOM 269 C ARG 46 32.953 51.951 7.443 1.00 0.00 C ATOM 270 O ARG 46 34.139 51.678 7.621 1.00 0.00 O ATOM 271 N ARG 47 32.415 53.115 7.796 1.00 0.00 N ATOM 273 CA ARG 47 33.207 54.163 8.426 1.00 0.00 C ATOM 274 CB ARG 47 32.623 55.541 8.107 1.00 0.00 C ATOM 275 C ARG 47 33.273 53.972 9.939 1.00 0.00 C ATOM 276 O ARG 47 33.879 54.772 10.650 1.00 0.00 O ATOM 277 N GLN 48 32.642 52.906 10.422 1.00 0.00 N ATOM 279 CA GLN 48 32.626 52.607 11.850 1.00 0.00 C ATOM 280 CB GLN 48 31.936 51.268 12.109 1.00 0.00 C ATOM 281 C GLN 48 34.040 52.575 12.422 1.00 0.00 C ATOM 282 O GLN 48 34.976 52.122 11.764 1.00 0.00 O ATOM 283 N PRO 49 34.204 53.060 13.661 1.00 0.00 N ATOM 284 CA PRO 49 35.508 53.090 14.331 1.00 0.00 C ATOM 285 CB PRO 49 35.213 53.852 15.625 1.00 0.00 C ATOM 286 C PRO 49 36.053 51.685 14.570 1.00 0.00 C ATOM 287 O PRO 49 35.292 50.741 14.785 1.00 0.00 O ATOM 288 N VAL 50 37.375 51.555 14.532 1.00 0.00 N ATOM 290 CA VAL 50 38.025 50.267 14.743 1.00 0.00 C ATOM 291 CB VAL 50 39.539 50.349 14.486 1.00 0.00 C ATOM 292 C VAL 50 37.787 49.756 16.162 1.00 0.00 C ATOM 293 O VAL 50 37.737 48.550 16.396 1.00 0.00 O ATOM 294 N SER 51 37.640 50.684 17.102 1.00 0.00 N ATOM 296 CA SER 51 37.407 50.329 18.497 1.00 0.00 C ATOM 297 CB SER 51 37.396 51.583 19.374 1.00 0.00 C ATOM 298 C SER 51 36.090 49.577 18.662 1.00 0.00 C ATOM 299 O SER 51 36.005 48.615 19.423 1.00 0.00 O ATOM 300 N GLU 52 35.066 50.023 17.941 1.00 0.00 N ATOM 302 CA GLU 52 33.752 49.392 18.006 1.00 0.00 C ATOM 303 CB GLU 52 32.781 50.081 17.043 1.00 0.00 C ATOM 304 C GLU 52 33.837 47.907 17.673 1.00 0.00 C ATOM 305 O GLU 52 33.195 47.079 18.320 1.00 0.00 O ATOM 306 N THR 53 34.631 47.577 16.660 1.00 0.00 N ATOM 308 CA THR 53 34.800 46.190 16.239 1.00 0.00 C ATOM 309 CB THR 53 35.647 46.088 14.957 1.00 0.00 C ATOM 310 C THR 53 35.454 45.358 17.337 1.00 0.00 C ATOM 311 O THR 53 35.036 44.233 17.608 1.00 0.00 O ATOM 312 N MET 54 36.480 45.920 17.968 1.00 0.00 N ATOM 314 CA MET 54 37.193 45.232 19.038 1.00 0.00 C ATOM 315 CB MET 54 38.395 46.058 19.498 1.00 0.00 C ATOM 316 C MET 54 36.275 44.959 20.224 1.00 0.00 C ATOM 317 O MET 54 36.280 43.862 20.786 1.00 0.00 O ATOM 318 N GLN 55 35.485 45.961 20.600 1.00 0.00 N ATOM 320 CA GLN 55 34.561 45.830 21.720 1.00 0.00 C ATOM 321 CB GLN 55 33.975 47.193 22.092 1.00 0.00 C ATOM 322 C GLN 55 33.432 44.859 21.392 1.00 0.00 C ATOM 323 O GLN 55 32.932 44.154 22.267 1.00 0.00 O ATOM 324 N VAL 56 33.036 44.828 20.123 1.00 0.00 N ATOM 326 CA VAL 56 31.966 43.943 19.677 1.00 0.00 C ATOM 327 CB VAL 56 31.565 44.235 18.219 1.00 0.00 C ATOM 328 C VAL 56 32.374 42.479 19.798 1.00 0.00 C ATOM 329 O VAL 56 31.636 41.663 20.350 1.00 0.00 O ATOM 330 N TYR 57 33.554 42.154 19.279 1.00 0.00 N ATOM 332 CA TYR 57 34.063 40.789 19.329 1.00 0.00 C ATOM 333 CB TYR 57 35.408 40.692 18.606 1.00 0.00 C ATOM 334 C TYR 57 34.218 40.310 20.768 1.00 0.00 C ATOM 335 O TYR 57 33.908 39.161 21.086 1.00 0.00 O ATOM 336 N LEU 58 34.698 41.196 21.634 1.00 0.00 N ATOM 338 CA LEU 58 34.896 40.864 23.040 1.00 0.00 C ATOM 339 CB LEU 58 35.450 42.068 23.803 1.00 0.00 C ATOM 340 C LEU 58 33.592 40.403 23.686 1.00 0.00 C ATOM 341 O LEU 58 32.538 41.005 23.476 1.00 0.00 O ATOM 342 N LYS 59 33.672 39.335 24.470 1.00 0.00 N ATOM 344 CA LYS 59 32.500 38.791 25.148 1.00 0.00 C ATOM 345 CB LYS 59 32.880 37.560 25.973 1.00 0.00 C ATOM 346 C LYS 59 31.852 39.834 26.050 1.00 0.00 C ATOM 347 O LYS 59 30.627 39.940 26.112 1.00 0.00 O ATOM 348 N GLN 60 32.681 40.603 26.749 1.00 0.00 N ATOM 350 CA GLN 60 32.191 41.639 27.649 1.00 0.00 C ATOM 351 CB GLN 60 33.359 42.394 28.285 1.00 0.00 C ATOM 352 C GLN 60 31.283 42.622 26.917 1.00 0.00 C ATOM 353 O GLN 60 30.472 43.311 27.536 1.00 0.00 O ATOM 354 N ALA 61 31.427 42.683 25.598 1.00 0.00 N ATOM 356 CA ALA 61 30.623 43.583 24.780 1.00 0.00 C ATOM 357 CB ALA 61 30.977 43.423 23.309 1.00 0.00 C ATOM 358 C ALA 61 29.132 43.326 24.981 1.00 0.00 C ATOM 359 O ALA 61 28.360 44.255 25.217 1.00 0.00 O ATOM 360 N ALA 62 28.736 42.061 24.887 1.00 0.00 N ATOM 362 CA ALA 62 27.338 41.681 25.057 1.00 0.00 C ATOM 363 CB ALA 62 26.695 41.407 23.707 1.00 0.00 C ATOM 364 C ALA 62 27.208 40.450 25.948 1.00 0.00 C ATOM 365 O ALA 62 26.258 39.678 25.823 1.00 0.00 O ATOM 366 N ASP 63 28.168 40.275 26.850 1.00 0.00 N ATOM 368 CA ASP 63 28.163 39.140 27.766 1.00 0.00 C ATOM 369 CB ASP 63 29.430 39.137 28.623 1.00 0.00 C ATOM 370 C ASP 63 26.933 39.163 28.668 1.00 0.00 C ATOM 371 O ASP 63 26.707 40.129 29.398 1.00 0.00 O ATOM 372 N PRO 64 26.127 38.094 28.622 1.00 0.00 N ATOM 373 CA PRO 64 24.912 37.985 29.435 1.00 0.00 C ATOM 374 CB PRO 64 24.405 36.580 29.112 1.00 0.00 C ATOM 375 C PRO 64 25.203 38.196 30.918 1.00 0.00 C ATOM 376 O PRO 64 26.105 37.572 31.479 1.00 0.00 O ATOM 377 N GLY 65 24.435 39.077 31.551 1.00 0.00 N ATOM 379 CA GLY 65 24.633 39.347 32.963 1.00 0.00 C ATOM 380 C GLY 65 23.998 38.295 33.850 1.00 0.00 C ATOM 381 O GLY 65 23.921 38.460 35.068 1.00 0.00 O ATOM 382 N ARG 66 23.542 37.209 33.236 1.00 0.00 N ATOM 384 CA ARG 66 22.909 36.121 33.973 1.00 0.00 C ATOM 385 CB ARG 66 21.397 36.121 33.735 1.00 0.00 C ATOM 386 C ARG 66 23.491 34.770 33.571 1.00 0.00 C ATOM 387 O ARG 66 23.582 34.451 32.386 1.00 0.00 O ATOM 388 N ASP 67 23.885 33.981 34.566 1.00 0.00 N ATOM 390 CA ASP 67 24.459 32.664 34.317 1.00 0.00 C ATOM 391 CB ASP 67 25.832 32.545 34.982 1.00 0.00 C ATOM 392 C ASP 67 23.543 31.558 34.828 1.00 0.00 C ATOM 393 O ASP 67 22.672 31.797 35.667 1.00 0.00 O ATOM 394 N VAL 68 23.745 30.347 34.320 1.00 0.00 N ATOM 396 CA VAL 68 22.937 29.203 34.725 1.00 0.00 C ATOM 397 CB VAL 68 21.890 28.843 33.654 1.00 0.00 C ATOM 398 C VAL 68 23.809 27.981 34.998 1.00 0.00 C ATOM 399 O VAL 68 24.902 27.850 34.447 1.00 0.00 O ATOM 400 N GLY 69 23.322 27.087 35.854 1.00 0.00 N ATOM 402 CA GLY 69 24.077 25.892 36.180 1.00 0.00 C ATOM 403 C GLY 69 23.537 24.658 35.483 1.00 0.00 C ATOM 404 O GLY 69 22.378 24.287 35.666 1.00 0.00 O ATOM 405 N LEU 70 24.384 24.020 34.683 1.00 0.00 N ATOM 407 CA LEU 70 23.991 22.819 33.952 1.00 0.00 C ATOM 408 CB LEU 70 23.514 23.181 32.546 1.00 0.00 C ATOM 409 C LEU 70 25.146 21.827 33.862 1.00 0.00 C ATOM 410 O LEU 70 26.313 22.217 33.851 1.00 0.00 O ATOM 411 N TYR 71 24.811 20.543 33.799 1.00 0.00 N ATOM 413 CA TYR 71 25.818 19.492 33.710 1.00 0.00 C ATOM 414 CB TYR 71 25.165 18.113 33.799 1.00 0.00 C ATOM 415 C TYR 71 26.614 19.601 32.412 1.00 0.00 C ATOM 416 O TYR 71 26.047 19.831 31.343 1.00 0.00 O ATOM 417 N TRP 72 27.927 19.431 32.512 1.00 0.00 N ATOM 419 CA TRP 72 28.802 19.508 31.349 1.00 0.00 C ATOM 420 CB TRP 72 29.939 20.500 31.598 1.00 0.00 C ATOM 421 C TRP 72 29.381 18.141 31.002 1.00 0.00 C ATOM 422 O TRP 72 29.840 17.410 31.880 1.00 0.00 O ATOM 423 N MET 73 29.356 17.801 29.717 1.00 0.00 N ATOM 425 CA MET 73 29.879 16.522 29.252 1.00 0.00 C ATOM 426 CB MET 73 29.114 16.049 28.015 1.00 0.00 C ATOM 427 C MET 73 31.366 16.619 28.929 1.00 0.00 C ATOM 428 O MET 73 31.835 17.631 28.411 1.00 0.00 O ATOM 429 N ALA 74 32.104 15.557 29.240 1.00 0.00 N ATOM 431 CA ALA 74 33.538 15.519 28.983 1.00 0.00 C ATOM 432 CB ALA 74 34.162 14.295 29.636 1.00 0.00 C ATOM 433 C ALA 74 33.831 15.509 27.487 1.00 0.00 C ATOM 434 O ALA 74 34.729 16.207 27.016 1.00 0.00 O ATOM 435 N THR 75 33.071 14.710 26.746 1.00 0.00 N ATOM 437 CA THR 75 33.248 14.605 25.302 1.00 0.00 C ATOM 438 CB THR 75 33.464 13.146 24.864 1.00 0.00 C ATOM 439 C THR 75 32.046 15.178 24.557 1.00 0.00 C ATOM 440 O THR 75 30.906 14.789 24.807 1.00 0.00 O ATOM 441 N ASP 76 32.311 16.103 23.640 1.00 0.00 N ATOM 443 CA ASP 76 31.252 16.730 22.856 1.00 0.00 C ATOM 444 CB ASP 76 31.765 18.009 22.192 1.00 0.00 C ATOM 445 C ASP 76 30.718 15.778 21.791 1.00 0.00 C ATOM 446 O ASP 76 31.456 14.955 21.254 1.00 0.00 O ATOM 447 N PHE 77 29.428 15.898 21.492 1.00 0.00 N ATOM 449 CA PHE 77 28.792 15.050 20.492 1.00 0.00 C ATOM 450 CB PHE 77 27.316 15.423 20.332 1.00 0.00 C ATOM 451 C PHE 77 29.497 15.161 19.144 1.00 0.00 C ATOM 452 O PHE 77 29.749 14.156 18.481 1.00 0.00 O ATOM 453 N GLU 78 29.813 16.389 18.746 1.00 0.00 N ATOM 455 CA GLU 78 30.490 16.633 17.479 1.00 0.00 C ATOM 456 CB GLU 78 30.588 18.134 17.203 1.00 0.00 C ATOM 457 C GLU 78 31.886 16.018 17.472 1.00 0.00 C ATOM 458 O GLU 78 32.570 15.995 18.496 1.00 0.00 O ATOM 459 N ASN 79 32.303 15.523 16.311 1.00 0.00 N ATOM 461 CA ASN 79 33.618 14.908 16.170 1.00 0.00 C ATOM 462 CB ASN 79 33.792 14.335 14.762 1.00 0.00 C ATOM 463 C ASN 79 34.730 15.914 16.454 1.00 0.00 C ATOM 464 O ASN 79 35.766 15.565 17.019 1.00 0.00 O ATOM 465 N ARG 80 34.505 17.164 16.060 1.00 0.00 N ATOM 467 CA ARG 80 35.486 18.221 16.271 1.00 0.00 C ATOM 468 CB ARG 80 35.806 18.928 14.951 1.00 0.00 C ATOM 469 C ARG 80 34.988 19.239 17.290 1.00 0.00 C ATOM 470 O ARG 80 35.684 20.202 17.611 1.00 0.00 O ATOM 471 N ARG 81 33.779 19.020 17.797 1.00 0.00 N ATOM 473 CA ARG 81 33.185 19.917 18.780 1.00 0.00 C ATOM 474 CB ARG 81 31.666 19.742 18.818 1.00 0.00 C ATOM 475 C ARG 81 33.764 19.673 20.170 1.00 0.00 C ATOM 476 O ARG 81 33.732 18.552 20.678 1.00 0.00 O ATOM 477 N PHE 82 34.292 20.730 20.780 1.00 0.00 N ATOM 479 CA PHE 82 34.879 20.633 22.112 1.00 0.00 C ATOM 480 CB PHE 82 35.704 21.881 22.426 1.00 0.00 C ATOM 481 C PHE 82 33.803 20.447 23.175 1.00 0.00 C ATOM 482 O PHE 82 32.621 20.683 22.925 1.00 0.00 O ATOM 483 N PRO 83 34.208 20.020 24.381 1.00 0.00 N ATOM 484 CA PRO 83 33.280 19.800 25.493 1.00 0.00 C ATOM 485 CB PRO 83 34.195 19.296 26.610 1.00 0.00 C ATOM 486 C PRO 83 32.525 21.073 25.861 1.00 0.00 C ATOM 487 O PRO 83 33.044 22.179 25.716 1.00 0.00 O ATOM 488 N GLY 84 31.295 20.914 26.338 1.00 0.00 N ATOM 490 CA GLY 84 30.494 22.063 26.716 1.00 0.00 C ATOM 491 C GLY 84 29.382 21.702 27.683 1.00 0.00 C ATOM 492 O GLY 84 29.426 20.657 28.331 1.00 0.00 O ATOM 493 N LYS 85 28.383 22.573 27.779 1.00 0.00 N ATOM 495 CA LYS 85 27.252 22.345 28.672 1.00 0.00 C ATOM 496 CB LYS 85 27.033 23.559 29.577 1.00 0.00 C ATOM 497 C LYS 85 25.979 22.054 27.885 1.00 0.00 C ATOM 498 O LYS 85 25.735 22.652 26.837 1.00 0.00 O ATOM 499 N VAL 86 25.169 21.134 28.398 1.00 0.00 N ATOM 501 CA VAL 86 23.919 20.763 27.745 1.00 0.00 C ATOM 502 CB VAL 86 23.496 19.327 28.110 1.00 0.00 C ATOM 503 C VAL 86 22.795 21.724 28.117 1.00 0.00 C ATOM 504 O VAL 86 22.758 22.250 29.230 1.00 0.00 O ATOM 505 N SER 87 21.881 21.950 27.179 1.00 0.00 N ATOM 507 CA SER 87 20.756 22.849 27.406 1.00 0.00 C ATOM 508 CB SER 87 21.039 24.226 26.803 1.00 0.00 C ATOM 509 C SER 87 19.471 22.283 26.812 1.00 0.00 C ATOM 510 O SER 87 19.499 21.302 26.069 1.00 0.00 O ATOM 511 N PRO 88 18.327 22.902 27.137 1.00 0.00 N ATOM 512 CA PRO 88 17.021 22.464 26.636 1.00 0.00 C ATOM 513 CB PRO 88 16.062 23.508 27.216 1.00 0.00 C ATOM 514 C PRO 88 16.991 22.398 25.113 1.00 0.00 C ATOM 515 O PRO 88 16.367 21.509 24.534 1.00 0.00 O ATOM 516 N SER 89 17.669 23.343 24.471 1.00 0.00 N ATOM 518 CA SER 89 17.722 23.393 23.014 1.00 0.00 C ATOM 519 CB SER 89 16.707 24.405 22.477 1.00 0.00 C ATOM 520 C SER 89 19.119 23.761 22.526 1.00 0.00 C ATOM 521 O SER 89 19.607 23.208 21.540 1.00 0.00 O ATOM 522 N GLY 90 19.760 24.695 23.219 1.00 0.00 N ATOM 524 CA GLY 90 21.095 25.114 22.834 1.00 0.00 C ATOM 525 C GLY 90 21.159 26.584 22.465 1.00 0.00 C ATOM 526 O GLY 90 20.205 27.330 22.685 1.00 0.00 O ATOM 527 N PHE 91 22.290 27.000 21.904 1.00 0.00 N ATOM 529 CA PHE 91 22.480 28.388 21.503 1.00 0.00 C ATOM 530 CB PHE 91 23.901 28.603 20.979 1.00 0.00 C ATOM 531 C PHE 91 21.473 28.796 20.434 1.00 0.00 C ATOM 532 O PHE 91 21.032 29.944 20.389 1.00 0.00 O ATOM 533 N GLN 92 21.114 27.848 19.574 1.00 0.00 N ATOM 535 CA GLN 92 20.159 28.107 18.503 1.00 0.00 C ATOM 536 CB GLN 92 19.882 26.828 17.711 1.00 0.00 C ATOM 537 C GLN 92 18.849 28.663 19.053 1.00 0.00 C ATOM 538 O GLN 92 18.333 29.666 18.560 1.00 0.00 O ATOM 539 N LYS 93 18.316 28.005 20.077 1.00 0.00 N ATOM 541 CA LYS 93 17.067 28.431 20.696 1.00 0.00 C ATOM 542 CB LYS 93 16.646 27.444 21.787 1.00 0.00 C ATOM 543 C LYS 93 17.195 29.830 21.290 1.00 0.00 C ATOM 544 O LYS 93 16.303 30.664 21.133 1.00 0.00 O ATOM 545 N LEU 94 18.308 30.077 21.972 1.00 0.00 N ATOM 547 CA LEU 94 18.554 31.374 22.590 1.00 0.00 C ATOM 548 CB LEU 94 19.872 31.354 23.369 1.00 0.00 C ATOM 549 C LEU 94 18.593 32.486 21.548 1.00 0.00 C ATOM 550 O LEU 94 18.049 33.569 21.761 1.00 0.00 O ATOM 551 N TYR 95 19.238 32.210 20.419 1.00 0.00 N ATOM 553 CA TYR 95 19.349 33.186 19.341 1.00 0.00 C ATOM 554 CB TYR 95 20.272 32.664 18.239 1.00 0.00 C ATOM 555 C TYR 95 17.981 33.514 18.751 1.00 0.00 C ATOM 556 O TYR 95 17.708 34.659 18.391 1.00 0.00 O ATOM 557 N ARG 96 17.126 32.502 18.654 1.00 0.00 N ATOM 559 CA ARG 96 15.786 32.679 18.109 1.00 0.00 C ATOM 560 CB ARG 96 15.074 31.330 17.985 1.00 0.00 C ATOM 561 C ARG 96 14.957 33.618 18.978 1.00 0.00 C ATOM 562 O ARG 96 14.328 34.551 18.477 1.00 0.00 O ATOM 563 N GLN 97 14.959 33.366 20.283 1.00 0.00 N ATOM 565 CA GLN 97 14.207 34.188 21.223 1.00 0.00 C ATOM 566 CB GLN 97 14.313 33.616 22.639 1.00 0.00 C ATOM 567 C GLN 97 14.704 35.630 21.214 1.00 0.00 C ATOM 568 O GLN 97 13.911 36.570 21.153 1.00 0.00 O ATOM 569 N TRP 98 16.021 35.798 21.276 1.00 0.00 N ATOM 571 CA TRP 98 16.626 37.124 21.274 1.00 0.00 C ATOM 572 CB TRP 98 18.097 37.042 21.682 1.00 0.00 C ATOM 573 C TRP 98 16.509 37.781 19.902 1.00 0.00 C ATOM 574 O TRP 98 16.401 39.002 19.795 1.00 0.00 O ATOM 575 N ARG 99 16.532 36.961 18.857 1.00 0.00 N ATOM 577 CA ARG 99 16.429 37.460 17.490 1.00 0.00 C ATOM 578 CB ARG 99 16.344 36.297 16.500 1.00 0.00 C ATOM 579 C ARG 99 15.213 38.365 17.323 1.00 0.00 C ATOM 580 O ARG 99 15.278 39.389 16.643 1.00 0.00 O ATOM 581 N ASN 100 14.106 37.982 17.950 1.00 0.00 N ATOM 583 CA ASN 100 12.874 38.758 17.873 1.00 0.00 C ATOM 584 CB ASN 100 11.664 37.874 18.179 1.00 0.00 C ATOM 585 C ASN 100 12.904 39.937 18.840 1.00 0.00 C ATOM 586 O ASN 100 12.478 39.822 19.988 1.00 0.00 O ATOM 587 N GLN 101 13.411 41.071 18.366 1.00 0.00 N ATOM 589 CA GLN 101 13.498 42.273 19.186 1.00 0.00 C ATOM 590 CB GLN 101 14.960 42.653 19.425 1.00 0.00 C ATOM 591 C GLN 101 12.765 43.440 18.533 1.00 0.00 C ATOM 592 O GLN 101 12.978 43.741 17.358 1.00 0.00 O ATOM 593 N THR 102 11.901 44.094 19.301 1.00 0.00 N ATOM 595 CA THR 102 11.135 45.229 18.799 1.00 0.00 C ATOM 596 CB THR 102 10.440 45.991 19.943 1.00 0.00 C ATOM 597 C THR 102 12.023 46.196 18.024 1.00 0.00 C ATOM 598 O THR 102 13.100 46.573 18.489 1.00 0.00 O ATOM 599 N GLY 103 11.572 46.596 16.840 1.00 0.00 N ATOM 601 CA GLY 103 12.345 47.514 16.026 1.00 0.00 C ATOM 602 C GLY 103 11.955 47.461 14.562 1.00 0.00 C ATOM 603 O GLY 103 11.132 46.640 14.158 1.00 0.00 O ATOM 604 N TRP 104 12.550 48.342 13.764 1.00 0.00 N ATOM 606 CA TRP 104 12.265 48.397 12.336 1.00 0.00 C ATOM 607 CB TRP 104 12.825 49.683 11.726 1.00 0.00 C ATOM 608 C TRP 104 12.846 47.188 11.609 1.00 0.00 C ATOM 609 O TRP 104 12.604 46.994 10.417 1.00 0.00 O ATOM 610 N ASP 105 13.612 46.380 12.333 1.00 0.00 N ATOM 612 CA ASP 105 14.228 45.190 11.760 1.00 0.00 C ATOM 613 CB ASP 105 15.551 44.880 12.462 1.00 0.00 C ATOM 614 C ASP 105 13.299 43.985 11.860 1.00 0.00 C ATOM 615 O ASP 105 12.247 44.051 12.494 1.00 0.00 O ATOM 616 N ALA 106 13.697 42.884 11.231 1.00 0.00 N ATOM 618 CA ALA 106 12.901 41.662 11.248 1.00 0.00 C ATOM 619 CB ALA 106 12.028 41.581 10.005 1.00 0.00 C ATOM 620 C ALA 106 13.790 40.426 11.332 1.00 0.00 C ATOM 621 O ALA 106 14.968 40.471 10.976 1.00 0.00 O ATOM 622 N TYR 107 13.219 39.324 11.806 1.00 0.00 N ATOM 624 CA TYR 107 13.958 38.074 11.939 1.00 0.00 C ATOM 625 CB TYR 107 13.104 37.019 12.646 1.00 0.00 C ATOM 626 C TYR 107 14.400 37.548 10.577 1.00 0.00 C ATOM 627 O TYR 107 15.529 37.082 10.418 1.00 0.00 O ATOM 628 N VAL 108 13.505 37.626 9.598 1.00 0.00 N ATOM 630 CA VAL 108 13.802 37.159 8.250 1.00 0.00 C ATOM 631 CB VAL 108 12.575 37.287 7.326 1.00 0.00 C ATOM 632 C VAL 108 14.967 37.931 7.642 1.00 0.00 C ATOM 633 O VAL 108 15.826 37.356 6.975 1.00 0.00 O ATOM 634 N GLN 109 14.990 39.239 7.877 1.00 0.00 N ATOM 636 CA GLN 109 16.048 40.094 7.354 1.00 0.00 C ATOM 637 CB GLN 109 15.669 41.568 7.500 1.00 0.00 C ATOM 638 C GLN 109 17.372 39.831 8.066 1.00 0.00 C ATOM 639 O GLN 109 18.442 40.138 7.539 1.00 0.00 O ATOM 640 N SER 110 17.291 39.261 9.263 1.00 0.00 N ATOM 642 CA SER 110 18.481 38.955 10.049 1.00 0.00 C ATOM 643 CB SER 110 18.096 38.273 11.361 1.00 0.00 C ATOM 644 C SER 110 19.441 38.064 9.269 1.00 0.00 C ATOM 645 O SER 110 20.651 38.291 9.266 1.00 0.00 O ATOM 646 N CYS 111 18.893 37.048 8.610 1.00 0.00 N ATOM 648 CA CYS 111 19.698 36.119 7.825 1.00 0.00 C ATOM 649 CB CYS 111 18.821 35.012 7.238 1.00 0.00 C ATOM 650 C CYS 111 20.433 36.841 6.701 1.00 0.00 C ATOM 651 O CYS 111 21.621 36.612 6.473 1.00 0.00 O ATOM 652 N ARG 112 19.718 37.715 5.999 1.00 0.00 N ATOM 654 CA ARG 112 20.298 38.472 4.897 1.00 0.00 C ATOM 655 CB ARG 112 19.229 39.320 4.205 1.00 0.00 C ATOM 656 C ARG 112 21.432 39.371 5.382 1.00 0.00 C ATOM 657 O ARG 112 22.471 39.480 4.733 1.00 0.00 O ATOM 658 N ALA 113 21.222 40.011 6.528 1.00 0.00 N ATOM 660 CA ALA 113 22.225 40.900 7.102 1.00 0.00 C ATOM 661 CB ALA 113 21.659 41.624 8.316 1.00 0.00 C ATOM 662 C ALA 113 23.480 40.132 7.500 1.00 0.00 C ATOM 663 O ALA 113 24.599 40.580 7.251 1.00 0.00 O ATOM 664 N ILE 114 23.287 38.972 8.122 1.00 0.00 N ATOM 666 CA ILE 114 24.403 38.141 8.555 1.00 0.00 C ATOM 667 CB ILE 114 23.926 36.973 9.439 1.00 0.00 C ATOM 668 C ILE 114 25.169 37.582 7.361 1.00 0.00 C ATOM 669 O ILE 114 26.400 37.590 7.342 1.00 0.00 O ATOM 670 N TRP 115 24.434 37.100 6.365 1.00 0.00 N ATOM 672 CA TRP 115 25.042 36.537 5.165 1.00 0.00 C ATOM 673 CB TRP 115 23.966 36.005 4.218 1.00 0.00 C ATOM 674 C TRP 115 25.897 37.573 4.442 1.00 0.00 C ATOM 675 O TRP 115 26.956 37.251 3.904 1.00 0.00 O ATOM 676 N ASN 116 25.430 38.816 4.434 1.00 0.00 N ATOM 678 CA ASN 116 26.150 39.902 3.779 1.00 0.00 C ATOM 679 CB ASN 116 25.351 41.204 3.866 1.00 0.00 C ATOM 680 C ASN 116 27.528 40.103 4.398 1.00 0.00 C ATOM 681 O ASN 116 28.507 40.345 3.692 1.00 0.00 O ATOM 682 N ASP 117 27.599 39.998 5.721 1.00 0.00 N ATOM 684 CA ASP 117 28.857 40.167 6.437 1.00 0.00 C ATOM 685 CB ASP 117 28.624 40.889 7.766 1.00 0.00 C ATOM 686 C ASP 117 29.531 38.822 6.695 1.00 0.00 C ATOM 687 O ASP 117 30.413 38.713 7.545 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 439 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.39 57.4 176 100.0 176 ARMSMC SECONDARY STRUCTURE . . 72.56 67.9 84 100.0 84 ARMSMC SURFACE . . . . . . . . 66.59 64.2 106 100.0 106 ARMSMC BURIED . . . . . . . . 91.35 47.1 70 100.0 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 36 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 53 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.08 (Number of atoms: 89) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.08 89 100.0 89 CRMSCA CRN = ALL/NP . . . . . 0.1695 CRMSCA SECONDARY STRUCTURE . . 14.52 42 100.0 42 CRMSCA SURFACE . . . . . . . . 14.16 54 100.0 54 CRMSCA BURIED . . . . . . . . 16.41 35 100.0 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.11 439 100.0 439 CRMSMC SECONDARY STRUCTURE . . 14.41 207 100.0 207 CRMSMC SURFACE . . . . . . . . 14.20 268 100.0 268 CRMSMC BURIED . . . . . . . . 16.44 171 100.0 171 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 15.68 83 21.7 383 CRMSSC RELIABLE SIDE CHAINS . 15.68 83 24.9 333 CRMSSC SECONDARY STRUCTURE . . 14.87 39 20.3 192 CRMSSC SURFACE . . . . . . . . 15.04 52 23.1 225 CRMSSC BURIED . . . . . . . . 16.69 31 19.6 158 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.11 439 59.4 739 CRMSALL SECONDARY STRUCTURE . . 14.41 207 57.5 360 CRMSALL SURFACE . . . . . . . . 14.20 268 60.8 441 CRMSALL BURIED . . . . . . . . 16.44 171 57.4 298 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.448 1.000 0.500 89 100.0 89 ERRCA SECONDARY STRUCTURE . . 12.461 1.000 0.500 42 100.0 42 ERRCA SURFACE . . . . . . . . 12.255 1.000 0.500 54 100.0 54 ERRCA BURIED . . . . . . . . 15.289 1.000 0.500 35 100.0 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.481 1.000 0.500 439 100.0 439 ERRMC SECONDARY STRUCTURE . . 12.368 1.000 0.500 207 100.0 207 ERRMC SURFACE . . . . . . . . 12.320 1.000 0.500 268 100.0 268 ERRMC BURIED . . . . . . . . 15.302 1.000 0.500 171 100.0 171 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.129 1.000 0.500 83 21.7 383 ERRSC RELIABLE SIDE CHAINS . 14.129 1.000 0.500 83 24.9 333 ERRSC SECONDARY STRUCTURE . . 12.962 1.000 0.500 39 20.3 192 ERRSC SURFACE . . . . . . . . 13.204 1.000 0.500 52 23.1 225 ERRSC BURIED . . . . . . . . 15.680 1.000 0.500 31 19.6 158 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.481 1.000 0.500 439 59.4 739 ERRALL SECONDARY STRUCTURE . . 12.368 1.000 0.500 207 57.5 360 ERRALL SURFACE . . . . . . . . 12.320 1.000 0.500 268 60.8 441 ERRALL BURIED . . . . . . . . 15.302 1.000 0.500 171 57.4 298 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 10 37 89 89 DISTCA CA (P) 0.00 2.25 5.62 11.24 41.57 89 DISTCA CA (RMS) 0.00 1.46 2.17 2.94 7.08 DISTCA ALL (N) 1 12 22 51 170 439 739 DISTALL ALL (P) 0.14 1.62 2.98 6.90 23.00 739 DISTALL ALL (RMS) 0.69 1.51 2.00 3.28 6.81 DISTALL END of the results output