####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 89 ( 356), selected 89 , name T0608TS328_1-D1 # Molecule2: number of CA atoms 89 ( 739), selected 89 , name T0608-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0608TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 41 - 72 4.98 20.35 LCS_AVERAGE: 27.72 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 29 - 36 1.62 22.85 LONGEST_CONTINUOUS_SEGMENT: 8 42 - 49 1.77 26.13 LCS_AVERAGE: 6.41 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 42 - 47 0.57 26.50 LCS_AVERAGE: 4.43 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 89 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 29 V 29 3 8 23 1 3 4 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT S 30 S 30 4 8 23 0 4 7 7 8 10 14 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT G 31 G 31 4 8 27 3 4 6 7 8 11 12 14 18 25 25 31 34 37 40 45 48 50 51 52 LCS_GDT F 32 F 32 4 8 27 3 4 6 7 8 11 12 14 18 25 26 29 33 36 40 43 47 50 51 52 LCS_GDT Q 33 Q 33 4 8 27 3 4 6 7 8 11 14 17 19 25 26 29 33 36 40 43 47 50 51 52 LCS_GDT R 34 R 34 4 8 27 3 4 6 7 8 11 14 17 19 22 25 29 33 35 38 42 46 47 51 52 LCS_GDT L 35 L 35 5 8 27 3 4 6 7 9 11 14 17 19 22 24 29 33 35 38 40 42 47 50 52 LCS_GDT Q 36 Q 36 5 8 27 3 4 6 7 9 11 14 17 19 22 25 29 33 35 38 40 42 46 50 52 LCS_GDT K 37 K 37 5 7 27 3 4 5 6 8 10 14 17 19 22 25 29 33 35 38 40 42 47 50 52 LCS_GDT P 38 P 38 5 7 27 3 4 5 6 9 10 14 17 19 22 25 29 33 35 38 40 43 47 50 52 LCS_GDT V 39 V 39 5 7 27 3 4 5 6 8 9 14 17 18 22 25 28 33 35 38 40 43 47 50 52 LCS_GDT V 40 V 40 4 7 27 3 4 4 6 8 9 14 17 18 20 25 28 33 35 38 41 45 47 51 52 LCS_GDT S 41 S 41 3 7 32 3 3 4 5 9 10 15 18 21 26 29 32 36 37 40 45 48 50 51 52 LCS_GDT Q 42 Q 42 6 8 32 4 6 6 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT P 43 P 43 6 8 32 4 6 6 7 9 10 14 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT D 44 D 44 6 8 32 4 6 6 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT F 45 F 45 6 8 32 4 6 6 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT R 46 R 46 6 8 32 4 6 6 7 7 9 14 17 22 25 29 32 36 39 40 45 48 50 51 52 LCS_GDT R 47 R 47 6 8 32 4 6 6 7 9 11 14 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT Q 48 Q 48 5 8 32 4 4 5 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT P 49 P 49 3 8 32 3 3 5 6 8 10 14 17 21 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT V 50 V 50 3 5 32 3 3 3 4 6 9 14 17 20 25 25 30 36 39 40 45 48 50 51 52 LCS_GDT S 51 S 51 4 5 32 4 4 4 4 6 7 12 13 17 22 25 29 33 39 40 43 48 50 51 52 LCS_GDT E 52 E 52 4 5 32 4 4 4 4 6 7 9 11 15 19 23 28 35 39 40 45 48 50 51 52 LCS_GDT T 53 T 53 4 5 32 4 4 4 4 6 7 9 11 15 19 23 28 34 39 40 45 48 50 51 52 LCS_GDT M 54 M 54 4 5 32 4 4 4 4 8 10 13 17 20 25 28 32 36 39 40 45 48 50 51 52 LCS_GDT Q 55 Q 55 3 5 32 3 3 3 5 7 10 13 15 20 25 25 29 33 37 40 43 48 50 51 52 LCS_GDT V 56 V 56 4 5 32 4 4 5 6 8 11 13 17 20 25 26 32 36 39 40 45 48 50 51 52 LCS_GDT Y 57 Y 57 4 5 32 4 4 4 5 9 11 14 17 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT L 58 L 58 4 6 32 4 4 5 5 6 6 9 13 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT K 59 K 59 4 6 32 4 4 5 5 8 10 14 18 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT Q 60 Q 60 3 6 32 4 4 5 6 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT A 61 A 61 3 6 32 3 3 5 5 5 9 15 18 21 25 28 32 36 39 40 45 48 50 51 52 LCS_GDT A 62 A 62 3 6 32 0 3 5 5 6 8 9 10 18 22 27 30 33 37 40 45 48 50 51 52 LCS_GDT D 63 D 63 5 6 32 4 4 5 7 9 12 15 18 21 25 29 32 36 39 40 45 48 50 51 52 LCS_GDT P 64 P 64 5 6 32 4 4 5 5 6 6 9 13 17 22 26 32 36 39 40 45 48 50 51 52 LCS_GDT G 65 G 65 5 6 32 4 4 5 5 6 7 9 11 14 22 26 31 36 39 40 45 48 50 51 52 LCS_GDT R 66 R 66 5 6 32 4 4 5 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT D 67 D 67 5 6 32 3 4 5 5 8 10 13 17 20 24 28 32 36 39 40 45 48 50 51 52 LCS_GDT V 68 V 68 4 4 32 3 4 4 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT G 69 G 69 4 4 32 3 4 4 4 5 6 9 11 20 25 29 32 36 39 40 45 48 50 51 52 LCS_GDT L 70 L 70 3 4 32 3 3 4 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT Y 71 Y 71 3 6 32 4 4 5 5 8 10 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT W 72 W 72 5 6 32 5 5 7 7 7 9 14 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT M 73 M 73 5 6 25 5 5 7 7 9 11 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT A 74 A 74 5 6 25 5 5 7 7 9 11 14 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT T 75 T 75 5 6 25 5 5 7 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT D 76 D 76 5 6 25 5 5 7 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT F 77 F 77 3 6 25 3 3 4 5 7 11 14 17 21 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT E 78 E 78 3 6 25 3 3 4 5 7 11 15 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT N 79 N 79 3 6 25 3 3 7 7 9 11 14 20 22 26 29 32 36 39 40 45 48 50 51 52 LCS_GDT R 80 R 80 3 6 24 3 3 4 5 6 8 9 11 15 20 24 28 34 39 40 45 48 50 51 52 LCS_GDT R 81 R 81 3 6 23 3 3 4 5 7 8 9 10 14 15 20 22 29 33 39 43 46 47 49 52 LCS_GDT F 82 F 82 3 5 23 3 3 4 5 7 8 9 10 14 15 17 21 22 30 31 37 41 43 47 51 LCS_GDT P 83 P 83 3 5 22 3 3 4 5 7 8 9 10 14 15 17 21 22 25 26 27 30 33 36 39 LCS_GDT G 84 G 84 3 6 18 3 3 4 5 7 8 9 10 13 15 17 19 22 25 26 27 28 30 32 34 LCS_GDT K 85 K 85 4 6 18 3 4 4 5 6 8 9 10 14 15 17 20 22 25 26 27 28 30 32 35 LCS_GDT V 86 V 86 4 6 18 3 4 4 5 7 9 11 11 14 15 17 21 22 25 26 27 30 33 33 35 LCS_GDT S 87 S 87 4 6 18 3 4 4 5 7 11 12 13 14 15 17 19 22 25 26 27 28 29 31 32 LCS_GDT P 88 P 88 4 6 17 3 4 4 6 8 11 12 13 14 14 15 17 19 20 24 25 26 27 28 30 LCS_GDT S 89 S 89 3 6 16 3 3 4 5 8 11 12 13 14 14 15 17 19 20 21 24 25 26 28 29 LCS_GDT G 90 G 90 3 4 16 3 3 4 5 6 6 7 11 14 14 15 17 19 20 21 24 25 26 28 30 LCS_GDT F 91 F 91 3 4 12 1 3 4 4 6 6 7 9 12 13 15 17 19 20 21 23 24 25 28 30 LCS_GDT Q 92 Q 92 3 3 12 3 3 3 3 4 5 7 8 10 12 15 17 19 20 21 23 24 25 28 30 LCS_GDT K 93 K 93 3 3 12 3 3 3 3 3 5 6 7 8 10 11 15 17 20 21 23 24 25 28 28 LCS_GDT L 94 L 94 3 3 12 3 3 3 3 3 5 7 8 9 11 15 17 19 20 21 23 24 25 28 28 LCS_GDT Y 95 Y 95 3 4 19 1 3 4 4 5 6 6 7 8 11 15 16 19 20 21 23 24 25 28 28 LCS_GDT R 96 R 96 3 4 19 3 3 4 4 5 6 6 7 8 10 12 14 19 20 21 22 23 25 28 28 LCS_GDT Q 97 Q 97 4 4 19 3 4 4 4 5 6 6 7 10 12 15 16 19 20 21 22 23 25 28 28 LCS_GDT W 98 W 98 4 6 19 3 4 4 5 5 7 7 8 10 12 15 16 19 20 21 22 23 25 28 28 LCS_GDT R 99 R 99 4 6 19 3 4 4 4 5 7 7 7 8 9 10 13 17 20 21 21 22 23 23 24 LCS_GDT N 100 N 100 4 6 19 3 4 4 5 5 7 7 8 10 12 15 17 19 20 21 23 24 25 28 28 LCS_GDT Q 101 Q 101 4 6 19 3 4 4 5 5 7 7 8 10 12 15 17 19 20 21 23 24 25 28 28 LCS_GDT T 102 T 102 4 6 19 3 4 4 5 5 7 7 9 12 13 15 17 19 20 21 23 24 25 28 28 LCS_GDT G 103 G 103 3 6 19 3 3 3 5 5 7 7 9 12 13 15 16 19 20 21 23 24 25 28 28 LCS_GDT W 104 W 104 4 4 19 3 3 3 4 5 6 7 9 12 13 15 17 19 20 21 23 24 25 28 28 LCS_GDT D 105 D 105 4 4 19 3 3 3 4 5 6 7 9 12 13 15 17 19 20 21 23 24 25 28 28 LCS_GDT A 106 A 106 4 4 19 3 3 3 4 5 6 7 9 12 13 15 17 19 20 21 23 24 25 28 28 LCS_GDT Y 107 Y 107 4 4 19 3 3 3 4 5 6 7 8 10 12 15 16 19 20 21 23 24 25 28 28 LCS_GDT V 108 V 108 3 4 19 3 3 4 4 5 6 7 8 10 12 15 17 19 20 21 23 24 25 28 28 LCS_GDT Q 109 Q 109 4 4 19 4 4 4 4 5 6 7 9 12 13 15 17 19 20 21 23 24 25 28 40 LCS_GDT S 110 S 110 4 4 19 4 4 4 4 5 7 7 9 12 13 15 17 19 20 21 23 24 25 28 28 LCS_GDT C 111 C 111 4 4 19 4 4 4 4 5 6 7 9 12 13 15 17 19 20 21 23 24 25 28 28 LCS_GDT R 112 R 112 4 4 19 4 4 4 4 5 6 7 8 12 13 15 17 19 20 21 23 26 29 36 44 LCS_GDT A 113 A 113 3 4 19 3 3 3 3 4 4 6 8 15 17 21 24 29 35 39 43 48 50 51 52 LCS_GDT I 114 I 114 3 4 19 2 3 4 4 4 5 5 6 8 12 14 22 26 31 35 45 48 50 51 52 LCS_GDT W 115 W 115 3 4 18 3 3 4 5 6 6 6 7 10 12 21 21 25 31 39 45 48 50 51 52 LCS_GDT N 116 N 116 3 4 11 3 3 4 4 4 4 5 12 17 22 23 26 31 35 39 45 48 50 51 52 LCS_GDT D 117 D 117 3 4 11 3 3 3 5 8 10 15 18 21 25 28 32 36 37 40 45 48 50 51 52 LCS_AVERAGE LCS_A: 12.86 ( 4.43 6.41 27.72 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 7 7 9 12 15 20 22 26 29 32 36 39 40 45 48 50 51 52 GDT PERCENT_AT 5.62 6.74 7.87 7.87 10.11 13.48 16.85 22.47 24.72 29.21 32.58 35.96 40.45 43.82 44.94 50.56 53.93 56.18 57.30 58.43 GDT RMS_LOCAL 0.24 0.57 1.07 1.02 1.79 2.30 2.71 3.19 3.37 3.78 4.02 4.29 4.60 5.06 5.10 5.59 5.83 6.04 6.16 6.28 GDT RMS_ALL_AT 26.96 26.50 26.78 26.65 21.32 21.29 21.04 22.13 22.50 22.11 22.03 21.42 21.29 22.00 21.53 20.50 20.17 20.16 20.12 20.18 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 29 V 29 2.726 3 0.609 0.609 4.824 60.952 34.830 LGA S 30 S 30 3.928 2 0.635 0.635 5.758 40.952 27.302 LGA G 31 G 31 8.521 0 0.036 0.036 10.582 4.405 4.405 LGA F 32 F 32 10.168 7 0.052 0.052 11.534 0.476 0.173 LGA Q 33 Q 33 8.139 5 0.473 0.473 11.415 3.095 1.376 LGA R 34 R 34 10.334 7 0.180 0.180 14.329 0.714 0.260 LGA L 35 L 35 15.922 4 0.593 0.593 17.038 0.000 0.000 LGA Q 36 Q 36 17.743 5 0.123 0.123 17.871 0.000 0.000 LGA K 37 K 37 17.211 5 0.560 0.560 17.340 0.000 0.000 LGA P 38 P 38 15.628 3 0.572 0.572 16.248 0.000 0.000 LGA V 39 V 39 14.561 3 0.644 0.644 15.629 0.000 0.000 LGA V 40 V 40 12.273 3 0.757 0.757 13.202 0.476 0.272 LGA S 41 S 41 6.708 2 0.745 0.745 8.864 24.167 16.111 LGA Q 42 Q 42 2.186 5 0.629 0.629 3.501 67.857 30.159 LGA P 43 P 43 3.417 3 0.046 0.046 3.417 57.381 32.789 LGA D 44 D 44 2.159 4 0.026 0.026 2.501 66.905 33.452 LGA F 45 F 45 3.198 7 0.132 0.132 4.624 49.048 17.835 LGA R 46 R 46 5.126 7 0.025 0.025 6.629 28.929 10.519 LGA R 47 R 47 3.963 7 0.189 0.189 4.417 43.452 15.801 LGA Q 48 Q 48 3.658 5 0.466 0.466 5.243 42.857 19.048 LGA P 49 P 49 5.535 3 0.589 0.589 5.938 27.857 15.918 LGA V 50 V 50 8.484 3 0.629 0.629 10.040 3.690 2.109 LGA S 51 S 51 9.116 2 0.547 0.547 9.116 5.238 3.492 LGA E 52 E 52 8.792 5 0.074 0.074 9.110 2.976 1.323 LGA T 53 T 53 9.358 3 0.272 0.272 9.443 1.786 1.020 LGA M 54 M 54 7.155 4 0.633 0.633 7.680 12.143 6.071 LGA Q 55 Q 55 9.893 5 0.612 0.612 10.239 0.595 0.265 LGA V 56 V 56 8.318 3 0.553 0.553 8.543 7.738 4.422 LGA Y 57 Y 57 7.036 8 0.080 0.080 7.684 12.857 4.286 LGA L 58 L 58 6.469 4 0.050 0.050 6.563 18.333 9.167 LGA K 59 K 59 5.381 5 0.072 0.072 5.466 34.881 15.503 LGA Q 60 Q 60 2.215 5 0.043 0.043 6.215 47.976 21.323 LGA A 61 A 61 5.554 1 0.614 0.614 6.801 23.810 19.048 LGA A 62 A 62 7.975 1 0.644 0.644 7.975 11.905 9.524 LGA D 63 D 63 5.202 4 0.352 0.352 5.705 25.119 12.560 LGA P 64 P 64 6.594 3 0.133 0.133 8.273 14.405 8.231 LGA G 65 G 65 5.894 0 0.023 0.023 6.266 22.738 22.738 LGA R 66 R 66 3.150 7 0.309 0.309 4.052 41.905 15.238 LGA D 67 D 67 6.544 4 0.435 0.435 6.767 19.762 9.881 LGA V 68 V 68 3.026 3 0.220 0.220 4.734 42.024 24.014 LGA G 69 G 69 5.047 0 0.496 0.496 5.047 34.524 34.524 LGA L 70 L 70 2.471 4 0.612 0.612 3.196 59.167 29.583 LGA Y 71 Y 71 3.940 8 0.600 0.600 5.079 42.500 14.167 LGA W 72 W 72 4.325 10 0.601 0.601 4.325 52.262 14.932 LGA M 73 M 73 3.054 4 0.024 0.024 3.417 53.571 26.786 LGA A 74 A 74 3.628 1 0.107 0.107 3.628 50.119 40.095 LGA T 75 T 75 1.630 3 0.245 0.245 2.008 70.833 40.476 LGA D 76 D 76 2.339 4 0.450 0.450 2.339 72.976 36.488 LGA F 77 F 77 5.653 7 0.408 0.408 5.807 28.095 10.216 LGA E 78 E 78 4.111 5 0.285 0.285 4.471 52.976 23.545 LGA N 79 N 79 2.938 4 0.055 0.055 6.637 48.095 24.048 LGA R 80 R 80 7.561 7 0.680 0.680 10.249 8.690 3.160 LGA R 81 R 81 11.431 7 0.654 0.654 14.444 0.119 0.043 LGA F 82 F 82 14.610 7 0.103 0.103 15.982 0.000 0.000 LGA P 83 P 83 19.550 3 0.576 0.576 23.536 0.000 0.000 LGA G 84 G 84 25.317 0 0.605 0.605 26.166 0.000 0.000 LGA K 85 K 85 25.943 5 0.124 0.124 25.943 0.000 0.000 LGA V 86 V 86 21.704 3 0.498 0.498 23.529 0.000 0.000 LGA S 87 S 87 26.439 2 0.057 0.057 28.139 0.000 0.000 LGA P 88 P 88 30.989 3 0.623 0.623 31.937 0.000 0.000 LGA S 89 S 89 35.086 2 0.027 0.027 35.086 0.000 0.000 LGA G 90 G 90 34.685 0 0.578 0.578 34.795 0.000 0.000 LGA F 91 F 91 32.667 7 0.660 0.660 34.003 0.000 0.000 LGA Q 92 Q 92 37.686 5 0.621 0.621 39.348 0.000 0.000 LGA K 93 K 93 41.272 5 0.630 0.630 41.483 0.000 0.000 LGA L 94 L 94 41.782 4 0.608 0.608 42.457 0.000 0.000 LGA Y 95 Y 95 42.207 8 0.613 0.613 44.416 0.000 0.000 LGA R 96 R 96 49.083 7 0.639 0.639 50.318 0.000 0.000 LGA Q 97 Q 97 52.438 5 0.504 0.504 52.438 0.000 0.000 LGA W 98 W 98 51.110 10 0.089 0.089 51.659 0.000 0.000 LGA R 99 R 99 52.003 7 0.106 0.106 52.003 0.000 0.000 LGA N 100 N 100 51.031 4 0.232 0.232 51.424 0.000 0.000 LGA Q 101 Q 101 49.750 5 0.637 0.637 50.149 0.000 0.000 LGA T 102 T 102 44.952 3 0.132 0.132 47.092 0.000 0.000 LGA G 103 G 103 37.928 0 0.677 0.677 40.256 0.000 0.000 LGA W 104 W 104 37.513 10 0.602 0.602 37.936 0.000 0.000 LGA D 105 D 105 34.663 4 0.036 0.036 36.076 0.000 0.000 LGA A 106 A 106 29.145 1 0.544 0.544 31.701 0.000 0.000 LGA Y 107 Y 107 27.021 8 0.579 0.579 27.944 0.000 0.000 LGA V 108 V 108 27.480 3 0.231 0.231 27.483 0.000 0.000 LGA Q 109 Q 109 20.836 5 0.320 0.320 23.256 0.000 0.000 LGA S 110 S 110 21.341 2 0.103 0.103 21.528 0.000 0.000 LGA C 111 C 111 20.137 2 0.148 0.148 20.734 0.000 0.000 LGA R 112 R 112 17.549 7 0.599 0.599 18.853 0.000 0.000 LGA A 113 A 113 12.921 1 0.614 0.614 14.149 0.714 0.571 LGA I 114 I 114 10.520 4 0.587 0.587 11.861 0.119 0.060 LGA W 115 W 115 10.533 10 0.644 0.644 10.533 1.310 0.374 LGA N 116 N 116 10.895 4 0.115 0.115 11.063 1.905 0.952 LGA D 117 D 117 7.972 4 0.710 0.710 8.613 7.024 3.512 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 89 356 356 100.00 739 356 48.17 89 SUMMARY(RMSD_GDC): 15.302 15.139 15.139 16.342 8.472 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 89 89 4.0 20 3.19 21.910 17.654 0.608 LGA_LOCAL RMSD: 3.192 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 22.132 Number of assigned atoms: 89 Std_ASGN_ATOMS RMSD: 15.302 Standard rmsd on all 89 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.995084 * X + -0.086847 * Y + -0.047590 * Z + 17.083338 Y_new = -0.059357 * X + 0.907716 * Y + -0.415366 * Z + 61.883507 Z_new = 0.079272 * X + -0.410499 * Y + -0.908409 * Z + 16.621675 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.082013 -0.079355 -2.717169 [DEG: -176.5863 -4.5467 -155.6823 ] ZXZ: -0.114077 2.710258 2.950830 [DEG: -6.5361 155.2864 169.0701 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0608TS328_1-D1 REMARK 2: T0608-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0608TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 89 89 4.0 20 3.19 17.654 15.30 REMARK ---------------------------------------------------------- MOLECULE T0608TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0608 REMARK MODEL 1 REMARK PARENT 1r6v_A ATOM 97 N VAL 29 24.861 48.314 24.263 1.00 3.00 N ATOM 98 CA VAL 29 26.074 47.561 24.577 1.00 3.00 C ATOM 99 C VAL 29 27.251 47.748 23.630 1.00 3.00 C ATOM 100 O VAL 29 28.360 48.048 24.050 1.00 3.00 O ATOM 101 N SER 30 26.985 47.539 22.348 1.00 9.00 N ATOM 102 CA SER 30 28.016 47.632 21.329 1.00 9.00 C ATOM 103 C SER 30 28.383 49.022 20.930 1.00 9.00 C ATOM 104 O SER 30 29.523 49.289 20.565 1.00 9.00 O ATOM 105 N GLY 31 27.430 49.929 20.997 1.00 9.00 N ATOM 106 CA GLY 31 27.707 51.288 20.617 1.00 9.00 C ATOM 107 C GLY 31 27.900 52.271 21.776 1.00 9.00 C ATOM 108 O GLY 31 28.904 52.965 21.827 1.00 9.00 O ATOM 109 N PHE 32 26.933 52.341 22.674 1.00 3.00 N ATOM 110 CA PHE 32 27.006 53.268 23.802 1.00 3.00 C ATOM 111 C PHE 32 28.068 52.917 24.846 1.00 3.00 C ATOM 112 O PHE 32 28.922 53.748 25.153 1.00 3.00 O ATOM 113 N GLN 33 28.005 51.704 25.402 1.00 3.00 N ATOM 114 CA GLN 33 29.341 51.284 25.391 1.00 3.00 C ATOM 115 C GLN 33 30.578 50.416 25.612 1.00 3.00 C ATOM 116 O GLN 33 31.470 50.790 26.383 1.00 3.00 O ATOM 117 N ARG 34 30.632 49.287 24.918 1.00 3.00 N ATOM 118 CA ARG 34 31.737 48.320 24.991 1.00 3.00 C ATOM 119 C ARG 34 33.062 49.000 24.672 1.00 3.00 C ATOM 120 O ARG 34 34.128 48.388 24.718 1.00 3.00 O ATOM 121 N LEU 35 32.965 50.263 24.281 1.00 3.00 N ATOM 122 CA LEU 35 34.101 51.096 23.942 1.00 3.00 C ATOM 123 C LEU 35 33.674 52.483 24.471 1.00 3.00 C ATOM 124 O LEU 35 32.834 53.153 23.857 1.00 3.00 O ATOM 125 N GLN 36 34.168 52.877 25.666 1.00 9.00 N ATOM 126 CA GLN 36 33.890 54.158 26.355 1.00 9.00 C ATOM 127 C GLN 36 33.792 55.428 25.502 1.00 9.00 C ATOM 128 O GLN 36 32.984 56.310 25.807 1.00 9.00 O ATOM 129 N LYS 37 34.626 55.561 24.464 1.00 9.00 N ATOM 130 CA LYS 37 34.517 56.755 23.617 1.00 9.00 C ATOM 131 C LYS 37 33.720 56.503 22.329 1.00 9.00 C ATOM 132 O LYS 37 34.021 57.061 21.279 1.00 9.00 O ATOM 133 N PRO 38 32.709 55.627 22.426 1.00 3.00 N ATOM 134 CA PRO 38 31.806 55.308 21.316 1.00 3.00 C ATOM 135 C PRO 38 32.350 54.912 19.952 1.00 3.00 C ATOM 136 O PRO 38 31.640 55.045 18.942 1.00 3.00 O ATOM 137 N VAL 39 33.575 54.400 19.917 1.00 3.00 N ATOM 138 CA VAL 39 34.200 53.973 18.661 1.00 3.00 C ATOM 139 C VAL 39 33.581 52.684 18.123 1.00 3.00 C ATOM 140 O VAL 39 33.386 51.735 18.882 1.00 3.00 O ATOM 141 N VAL 40 33.276 52.650 16.834 1.00 3.00 N ATOM 142 CA VAL 40 32.809 51.396 16.254 1.00 3.00 C ATOM 143 C VAL 40 32.582 51.988 13.953 1.00 3.00 C ATOM 144 O VAL 40 31.723 52.865 14.011 1.00 3.00 O ATOM 145 N SER 41 33.026 51.470 12.814 1.00 3.00 N ATOM 146 CA SER 41 32.473 51.876 11.523 1.00 3.00 C ATOM 147 C SER 41 31.372 50.854 11.287 1.00 3.00 C ATOM 148 O SER 41 31.418 49.759 11.846 1.00 3.00 O ATOM 149 N GLN 42 30.365 51.190 10.469 1.00 3.00 N ATOM 150 CA GLN 42 29.297 50.217 10.236 1.00 3.00 C ATOM 151 C GLN 42 29.723 48.810 9.821 1.00 3.00 C ATOM 152 O GLN 42 29.182 47.824 10.330 1.00 3.00 O ATOM 153 N PRO 43 30.697 48.689 8.923 1.00 3.00 N ATOM 154 CA PRO 43 31.111 47.352 8.517 1.00 3.00 C ATOM 155 C PRO 43 31.713 46.576 9.691 1.00 3.00 C ATOM 156 O PRO 43 31.581 45.355 9.767 1.00 3.00 O ATOM 157 N ASP 44 32.354 47.284 10.616 1.00 3.00 N ATOM 158 CA ASP 44 32.947 46.603 11.758 1.00 3.00 C ATOM 159 C ASP 44 31.870 46.026 12.665 1.00 3.00 C ATOM 160 O ASP 44 32.020 44.933 13.209 1.00 3.00 O ATOM 161 N PHE 45 30.785 46.769 12.838 1.00 3.00 N ATOM 162 CA PHE 45 29.694 46.302 13.668 1.00 3.00 C ATOM 163 C PHE 45 28.933 45.046 13.219 1.00 3.00 C ATOM 164 O PHE 45 29.105 43.977 13.782 1.00 3.00 O ATOM 165 N ARG 46 28.091 45.191 12.187 1.00 3.00 N ATOM 166 CA ARG 46 27.296 44.065 11.693 1.00 3.00 C ATOM 167 C ARG 46 28.148 42.891 11.243 1.00 3.00 C ATOM 168 O ARG 46 27.820 41.732 11.486 1.00 3.00 O ATOM 169 N ARG 47 29.242 43.208 10.565 1.00 3.00 N ATOM 170 CA ARG 47 30.168 42.220 10.023 1.00 3.00 C ATOM 171 C ARG 47 31.013 41.529 11.100 1.00 3.00 C ATOM 172 O ARG 47 30.926 40.322 11.294 1.00 3.00 O ATOM 173 N GLN 48 31.812 42.318 11.811 1.00 9.00 N ATOM 174 CA GLN 48 32.693 41.788 12.838 1.00 9.00 C ATOM 175 C GLN 48 32.042 41.259 14.121 1.00 9.00 C ATOM 176 O GLN 48 32.553 40.300 14.708 1.00 9.00 O ATOM 177 N PRO 49 30.935 41.845 14.548 1.00 3.00 N ATOM 178 CA PRO 49 30.280 41.405 15.771 1.00 3.00 C ATOM 179 C PRO 49 29.142 40.407 15.600 1.00 3.00 C ATOM 180 O PRO 49 29.132 39.354 16.227 1.00 3.00 O ATOM 181 N VAL 50 28.186 40.750 14.741 1.00 3.00 N ATOM 182 CA VAL 50 27.036 39.877 14.518 1.00 3.00 C ATOM 183 C VAL 50 27.329 38.669 13.628 1.00 3.00 C ATOM 184 O VAL 50 26.639 37.654 13.710 1.00 3.00 O ATOM 185 N SER 51 28.339 38.790 12.770 1.00 3.00 N ATOM 186 CA SER 51 28.675 37.698 11.876 1.00 3.00 C ATOM 187 C SER 51 29.772 36.806 12.418 1.00 3.00 C ATOM 188 O SER 51 29.606 35.587 12.434 1.00 3.00 O ATOM 189 N GLU 52 30.869 37.397 12.884 1.00 3.00 N ATOM 190 CA GLU 52 31.972 36.610 13.424 1.00 3.00 C ATOM 191 C GLU 52 31.648 35.933 14.751 1.00 3.00 C ATOM 192 O GLU 52 32.290 34.936 15.102 1.00 3.00 O ATOM 193 N THR 53 30.657 36.444 15.478 1.00 3.00 N ATOM 194 CA THR 53 30.314 35.875 16.779 1.00 3.00 C ATOM 195 C THR 53 28.970 35.170 16.851 1.00 3.00 C ATOM 196 O THR 53 28.563 34.702 17.926 1.00 3.00 O ATOM 197 N MET 54 28.287 35.078 15.712 1.00 3.00 N ATOM 198 CA MET 54 26.981 34.425 15.672 1.00 3.00 C ATOM 199 C MET 54 27.115 32.946 15.973 1.00 3.00 C ATOM 200 O MET 54 28.129 32.332 15.663 1.00 3.00 O ATOM 201 N GLN 55 26.079 32.384 16.579 1.00 3.00 N ATOM 202 CA GLN 55 26.067 30.973 16.911 1.00 3.00 C ATOM 203 C GLN 55 25.601 30.225 15.681 1.00 3.00 C ATOM 204 O GLN 55 24.497 30.453 15.170 1.00 3.00 O ATOM 205 N VAL 56 26.461 29.339 15.195 1.00 3.00 N ATOM 206 CA VAL 56 26.162 28.554 14.012 1.00 3.00 C ATOM 207 C VAL 56 25.368 27.332 14.461 1.00 3.00 C ATOM 208 O VAL 56 25.930 26.254 14.645 1.00 3.00 O ATOM 209 N TYR 57 24.062 27.498 14.641 1.00 3.00 N ATOM 210 CA TYR 57 23.225 26.405 15.100 1.00 3.00 C ATOM 211 C TYR 57 23.050 25.283 14.081 1.00 3.00 C ATOM 212 O TYR 57 22.848 24.126 14.463 1.00 3.00 O ATOM 213 N LEU 58 23.139 25.610 12.795 1.00 3.00 N ATOM 214 CA LEU 58 23.009 24.600 11.750 1.00 3.00 C ATOM 215 C LEU 58 24.288 23.786 11.558 1.00 3.00 C ATOM 216 O LEU 58 24.237 22.648 11.085 1.00 3.00 O ATOM 217 N LYS 59 25.427 24.372 11.908 1.00 3.00 N ATOM 218 CA LYS 59 26.693 23.671 11.774 1.00 3.00 C ATOM 219 C LYS 59 27.378 23.849 10.433 1.00 3.00 C ATOM 220 O LYS 59 28.522 23.421 10.256 1.00 3.00 O ATOM 221 N GLN 60 26.683 24.476 9.489 1.00 3.00 N ATOM 222 CA GLN 60 27.221 24.718 8.154 1.00 3.00 C ATOM 223 C GLN 60 28.030 26.018 8.065 1.00 3.00 C ATOM 224 O GLN 60 28.609 26.316 7.026 1.00 3.00 O ATOM 225 N ALA 61 28.043 26.802 9.138 1.00 3.00 N ATOM 226 CA ALA 61 28.803 28.043 9.118 1.00 3.00 C ATOM 227 C ALA 61 28.083 29.251 8.540 1.00 3.00 C ATOM 228 O ALA 61 28.104 30.328 9.139 1.00 3.00 O ATOM 229 N ALA 62 27.464 29.080 7.376 1.00 3.00 N ATOM 230 CA ALA 62 26.733 30.152 6.707 1.00 3.00 C ATOM 231 C ALA 62 25.747 29.569 5.703 1.00 3.00 C ATOM 232 O ALA 62 26.048 28.565 5.050 1.00 3.00 O ATOM 233 N ASP 63 24.581 30.201 5.578 1.00 3.00 N ATOM 234 CA ASP 63 23.558 29.781 4.623 1.00 3.00 C ATOM 235 C ASP 63 22.630 30.950 4.272 1.00 3.00 C ATOM 236 O ASP 63 22.628 31.962 4.964 1.00 3.00 O ATOM 237 N PRO 64 21.869 30.812 3.184 1.00 3.00 N ATOM 238 CA PRO 64 20.952 31.859 2.719 1.00 3.00 C ATOM 239 C PRO 64 19.742 32.083 3.616 1.00 3.00 C ATOM 240 O PRO 64 19.018 33.065 3.460 1.00 3.00 O ATOM 241 N GLY 65 19.504 31.174 4.549 1.00 3.00 N ATOM 242 CA GLY 65 18.341 31.312 5.413 1.00 3.00 C ATOM 243 C GLY 65 18.583 32.207 6.626 1.00 3.00 C ATOM 244 O GLY 65 17.798 33.118 6.914 1.00 3.00 O ATOM 245 N ARG 66 19.683 31.953 7.321 1.00 3.00 N ATOM 246 CA ARG 66 19.996 32.701 8.533 1.00 3.00 C ATOM 247 C ARG 66 21.370 33.343 8.532 1.00 3.00 C ATOM 248 O ARG 66 21.865 33.759 9.583 1.00 3.00 O ATOM 249 N ASP 67 21.985 33.440 7.364 1.00 3.00 N ATOM 250 CA ASP 67 23.309 34.039 7.311 1.00 3.00 C ATOM 251 C ASP 67 24.280 33.248 8.167 1.00 3.00 C ATOM 252 O ASP 67 24.312 32.019 8.097 1.00 3.00 O ATOM 253 N VAL 68 25.061 33.935 8.997 1.00 3.00 N ATOM 254 CA VAL 68 26.046 33.256 9.831 1.00 3.00 C ATOM 255 C VAL 68 25.513 32.639 11.123 1.00 3.00 C ATOM 256 O VAL 68 26.278 32.063 11.895 1.00 3.00 O ATOM 257 N GLY 69 24.208 32.761 11.357 1.00 3.00 N ATOM 258 CA GLY 69 23.612 32.172 12.546 1.00 3.00 C ATOM 259 C GLY 69 22.879 33.120 13.469 1.00 3.00 C ATOM 260 O GLY 69 22.537 34.236 13.085 1.00 3.00 O ATOM 261 N LEU 70 22.637 32.656 14.689 1.00 3.00 N ATOM 262 CA LEU 70 21.949 33.416 15.722 1.00 3.00 C ATOM 263 C LEU 70 22.836 34.522 16.284 1.00 3.00 C ATOM 264 O LEU 70 23.958 34.264 16.723 1.00 3.00 O ATOM 265 N TYR 71 22.331 35.755 16.297 1.00 3.00 N ATOM 266 CA TYR 71 23.117 36.857 16.845 1.00 3.00 C ATOM 267 C TYR 71 23.353 36.594 18.344 1.00 3.00 C ATOM 268 O TYR 71 22.453 36.162 19.065 1.00 3.00 O ATOM 269 N TRP 72 24.574 36.854 18.807 1.00 3.00 N ATOM 270 CA TRP 72 24.935 36.645 20.200 1.00 3.00 C ATOM 271 C TRP 72 25.557 37.904 20.791 1.00 3.00 C ATOM 272 O TRP 72 26.703 38.254 20.484 1.00 3.00 O ATOM 273 N MET 73 24.791 38.574 21.639 1.00 3.00 N ATOM 274 CA MET 73 25.248 39.810 22.272 1.00 3.00 C ATOM 275 C MET 73 26.434 39.550 23.191 1.00 3.00 C ATOM 276 O MET 73 27.394 40.323 23.211 1.00 3.00 O ATOM 277 N ALA 74 26.383 38.465 23.954 1.00 3.00 N ATOM 278 CA ALA 74 27.485 38.215 24.863 1.00 3.00 C ATOM 279 C ALA 74 28.807 37.987 24.134 1.00 3.00 C ATOM 280 O ALA 74 29.822 38.586 24.509 1.00 3.00 O ATOM 281 N THR 75 28.800 37.160 23.092 1.00 3.00 N ATOM 282 CA THR 75 30.018 36.902 22.327 1.00 3.00 C ATOM 283 C THR 75 30.449 38.157 21.567 1.00 3.00 C ATOM 284 O THR 75 31.642 38.479 21.486 1.00 3.00 O ATOM 285 N ASP 76 29.484 38.886 21.015 1.00 3.00 N ATOM 286 CA ASP 76 29.826 40.100 20.274 1.00 3.00 C ATOM 287 C ASP 76 30.457 41.153 21.180 1.00 3.00 C ATOM 288 O ASP 76 31.444 41.800 20.811 1.00 3.00 O ATOM 289 N PHE 77 29.904 41.315 22.377 1.00 3.00 N ATOM 290 CA PHE 77 30.412 42.332 23.286 1.00 3.00 C ATOM 291 C PHE 77 31.929 42.243 23.229 1.00 3.00 C ATOM 292 O PHE 77 32.624 43.251 23.330 1.00 3.00 O ATOM 293 N GLU 78 32.445 41.030 23.068 1.00 3.00 N ATOM 294 CA GLU 78 33.878 40.802 23.007 1.00 3.00 C ATOM 295 C GLU 78 34.412 41.140 21.625 1.00 3.00 C ATOM 296 O GLU 78 35.553 41.597 21.491 1.00 3.00 O ATOM 297 N ASN 79 33.586 40.913 20.619 1.00 3.00 N ATOM 298 CA ASN 79 33.973 41.189 19.239 1.00 3.00 C ATOM 299 C ASN 79 34.000 42.699 19.024 1.00 3.00 C ATOM 300 O ASN 79 34.571 43.171 18.050 1.00 3.00 O ATOM 301 N ARG 80 33.383 43.441 19.942 1.00 9.00 N ATOM 302 CA ARG 80 33.341 44.894 19.848 1.00 9.00 C ATOM 303 C ARG 80 34.723 45.479 20.093 1.00 9.00 C ATOM 304 O ARG 80 34.930 46.679 19.913 1.00 9.00 O ATOM 305 N ARG 81 35.666 44.642 20.495 1.00 3.00 N ATOM 306 CA ARG 81 37.042 45.079 20.763 1.00 3.00 C ATOM 307 C ARG 81 37.929 44.858 19.532 1.00 3.00 C ATOM 308 O ARG 81 38.949 45.523 19.368 1.00 3.00 O ATOM 309 N PHE 82 37.527 43.911 18.687 1.00 3.00 N ATOM 310 CA PHE 82 38.303 43.581 17.501 1.00 3.00 C ATOM 311 C PHE 82 37.448 43.333 16.253 1.00 3.00 C ATOM 312 O PHE 82 36.318 42.855 16.350 1.00 3.00 O ATOM 313 N PRO 83 38.024 43.649 15.105 1.00 3.00 N ATOM 314 CA PRO 83 37.359 43.482 13.819 1.00 3.00 C ATOM 315 C PRO 83 38.083 44.614 13.103 1.00 3.00 C ATOM 316 O PRO 83 37.526 45.690 12.913 1.00 3.00 O ATOM 317 N GLY 84 39.332 44.359 12.726 1.00 3.00 N ATOM 318 CA GLY 84 40.139 45.351 12.030 1.00 3.00 C ATOM 319 C GLY 84 40.214 45.012 10.545 1.00 3.00 C ATOM 320 O GLY 84 40.704 45.801 9.743 1.00 3.00 O ATOM 321 N LYS 85 39.724 43.836 10.186 1.00 3.00 N ATOM 322 CA LYS 85 39.714 43.407 8.799 1.00 3.00 C ATOM 323 C LYS 85 38.409 42.674 8.530 1.00 3.00 C ATOM 324 O LYS 85 37.688 42.311 9.467 1.00 3.00 O ATOM 325 N VAL 86 38.096 42.484 7.253 1.00 3.00 N ATOM 326 CA VAL 86 36.878 41.777 6.899 1.00 3.00 C ATOM 327 C VAL 86 35.896 42.624 6.114 1.00 3.00 C ATOM 328 O VAL 86 34.927 42.095 5.581 1.00 3.00 O ATOM 329 N SER 87 36.138 43.929 6.048 1.00 3.00 N ATOM 330 CA SER 87 35.238 44.803 5.302 1.00 3.00 C ATOM 331 C SER 87 35.944 46.046 4.804 1.00 3.00 C ATOM 332 O SER 87 37.114 46.276 5.131 1.00 3.00 O ATOM 333 N PRO 88 35.261 46.835 3.978 1.00 3.00 N ATOM 334 CA PRO 88 35.825 48.084 3.470 1.00 3.00 C ATOM 335 C PRO 88 34.763 49.171 3.616 1.00 3.00 C ATOM 336 O PRO 88 33.561 48.910 3.494 1.00 3.00 O ATOM 337 N SER 89 35.209 50.390 3.896 1.00 3.00 N ATOM 338 CA SER 89 34.279 51.498 4.039 1.00 3.00 C ATOM 339 C SER 89 33.509 51.710 2.748 1.00 3.00 C ATOM 340 O SER 89 32.318 52.021 2.771 1.00 3.00 O ATOM 341 N GLY 90 34.196 51.530 1.625 1.00 3.00 N ATOM 342 CA GLY 90 33.563 51.698 0.331 1.00 3.00 C ATOM 343 C GLY 90 34.321 51.061 -0.820 1.00 3.00 C ATOM 344 O GLY 90 35.545 51.164 -0.917 1.00 3.00 O ATOM 345 N PHE 91 33.570 50.383 -1.679 1.00 3.00 N ATOM 346 CA PHE 91 34.115 49.776 -2.889 1.00 3.00 C ATOM 347 C PHE 91 33.270 50.378 -4.010 1.00 3.00 C ATOM 348 O PHE 91 32.057 50.496 -3.864 1.00 3.00 O ATOM 349 N GLN 92 33.896 50.780 -5.109 1.00 3.00 N ATOM 350 CA GLN 92 33.114 51.337 -6.217 1.00 3.00 C ATOM 351 C GLN 92 33.448 50.658 -7.523 1.00 3.00 C ATOM 352 O GLN 92 34.577 50.211 -7.728 1.00 3.00 O ATOM 353 N LYS 93 32.453 50.556 -8.401 1.00 3.00 N ATOM 354 CA LYS 93 32.667 50.014 -9.733 1.00 3.00 C ATOM 355 C LYS 93 32.278 51.206 -10.607 1.00 3.00 C ATOM 356 O LYS 93 31.175 51.738 -10.489 1.00 3.00 O ATOM 357 N LEU 94 33.215 51.655 -11.433 1.00 3.00 N ATOM 358 CA LEU 94 32.993 52.800 -12.311 1.00 3.00 C ATOM 359 C LEU 94 32.991 52.306 -13.752 1.00 3.00 C ATOM 360 O LEU 94 34.012 51.827 -14.238 1.00 3.00 O ATOM 361 N TYR 95 31.847 52.419 -14.426 1.00 3.00 N ATOM 362 CA TYR 95 31.717 51.966 -15.823 1.00 3.00 C ATOM 363 C TYR 95 31.680 53.197 -16.726 1.00 3.00 C ATOM 364 O TYR 95 30.877 54.096 -16.504 1.00 3.00 O ATOM 365 N ARG 96 32.548 53.236 -17.737 1.00 3.00 N ATOM 366 CA ARG 96 32.611 54.377 -18.654 1.00 3.00 C ATOM 367 C ARG 96 32.654 53.870 -20.086 1.00 3.00 C ATOM 368 O ARG 96 32.649 52.663 -20.313 1.00 3.00 O ATOM 369 N GLN 97 32.686 54.794 -21.043 1.00 3.00 N ATOM 370 CA GLN 97 32.784 54.398 -22.442 1.00 3.00 C ATOM 371 C GLN 97 34.234 53.975 -22.676 1.00 3.00 C ATOM 372 O GLN 97 35.048 53.990 -21.748 1.00 3.00 O ATOM 373 N TRP 98 34.557 53.599 -23.907 1.00 3.00 N ATOM 374 CA TRP 98 35.895 53.114 -24.250 1.00 3.00 C ATOM 375 C TRP 98 37.076 53.982 -23.820 1.00 3.00 C ATOM 376 O TRP 98 38.060 53.469 -23.282 1.00 3.00 O ATOM 377 N ARG 99 36.984 55.285 -24.060 1.00 3.00 N ATOM 378 CA ARG 99 38.055 56.212 -23.712 1.00 3.00 C ATOM 379 C ARG 99 37.936 56.728 -22.288 1.00 3.00 C ATOM 380 O ARG 99 38.741 57.551 -21.857 1.00 3.00 O ATOM 381 N ASN 100 36.932 56.254 -21.562 1.00 3.00 N ATOM 382 CA ASN 100 36.743 56.688 -20.190 1.00 3.00 C ATOM 383 C ASN 100 36.374 58.152 -20.046 1.00 3.00 C ATOM 384 O ASN 100 36.704 58.788 -19.042 1.00 3.00 O ATOM 385 N GLN 101 35.677 58.693 -21.040 1.00 3.00 N ATOM 386 CA GLN 101 35.270 60.084 -21.005 1.00 3.00 C ATOM 387 C GLN 101 33.907 60.295 -20.339 1.00 3.00 C ATOM 388 O GLN 101 33.699 61.293 -19.662 1.00 3.00 O ATOM 389 N THR 102 32.988 59.353 -20.518 1.00 3.00 N ATOM 390 CA THR 102 31.657 59.476 -19.926 1.00 3.00 C ATOM 391 C THR 102 31.134 58.374 -19.067 1.00 3.00 C ATOM 392 O THR 102 31.181 57.228 -19.461 1.00 3.00 O ATOM 393 N GLY 103 30.617 58.692 -17.922 1.00 3.00 N ATOM 394 CA GLY 103 30.137 57.580 -17.200 1.00 3.00 C ATOM 395 C GLY 103 28.675 57.332 -17.476 1.00 3.00 C ATOM 396 O GLY 103 27.943 58.294 -17.666 1.00 3.00 O ATOM 397 N TRP 104 28.281 56.059 -17.541 1.00 3.00 N ATOM 398 CA TRP 104 26.910 55.651 -17.816 1.00 3.00 C ATOM 399 C TRP 104 25.929 56.447 -17.058 1.00 3.00 C ATOM 400 O TRP 104 26.154 56.672 -15.868 1.00 3.00 O ATOM 401 N ASP 105 24.869 56.836 -17.741 1.00 9.00 N ATOM 402 CA ASP 105 23.804 57.603 -17.118 1.00 9.00 C ATOM 403 C ASP 105 22.821 56.689 -16.451 1.00 9.00 C ATOM 404 O ASP 105 22.379 56.880 -15.309 1.00 9.00 O ATOM 405 N ALA 106 22.404 55.730 -17.262 1.00 3.00 N ATOM 406 CA ALA 106 21.578 54.450 -16.633 1.00 3.00 C ATOM 407 C ALA 106 21.975 53.175 -15.923 1.00 3.00 C ATOM 408 O ALA 106 22.755 52.343 -16.384 1.00 3.00 O ATOM 409 N TYR 107 21.460 52.979 -14.694 1.00 3.00 N ATOM 410 CA TYR 107 21.743 51.830 -13.856 1.00 3.00 C ATOM 411 C TYR 107 21.251 50.504 -14.430 1.00 3.00 C ATOM 412 O TYR 107 20.081 50.369 -14.804 1.00 3.00 O ATOM 413 N VAL 108 22.155 49.511 -14.475 1.00 3.00 N ATOM 414 CA VAL 108 21.753 48.221 -15.034 1.00 3.00 C ATOM 415 C VAL 108 22.098 47.060 -14.126 1.00 3.00 C ATOM 416 O VAL 108 22.072 45.906 -14.537 1.00 3.00 O ATOM 417 N GLN 109 22.477 47.351 -12.869 1.00 9.00 N ATOM 418 CA GLN 109 22.820 46.263 -11.952 1.00 9.00 C ATOM 419 C GLN 109 24.142 45.614 -12.321 1.00 9.00 C ATOM 420 O GLN 109 24.393 44.485 -11.936 1.00 9.00 O ATOM 421 N SER 110 25.011 46.301 -13.021 1.00 3.00 N ATOM 422 CA SER 110 26.310 45.976 -13.481 1.00 3.00 C ATOM 423 C SER 110 27.355 45.796 -12.378 1.00 3.00 C ATOM 424 O SER 110 28.341 45.065 -12.567 1.00 3.00 O ATOM 425 N CYS 111 27.094 46.233 -11.149 1.00 3.00 N ATOM 426 CA CYS 111 27.990 45.910 -10.034 1.00 3.00 C ATOM 427 C CYS 111 27.761 44.440 -9.679 1.00 3.00 C ATOM 428 O CYS 111 28.637 43.863 -9.028 1.00 3.00 O ATOM 429 N ARG 112 26.627 43.820 -10.011 1.00 3.00 N ATOM 430 CA ARG 112 26.422 42.414 -9.633 1.00 3.00 C ATOM 431 C ARG 112 27.836 41.535 -8.906 1.00 3.00 C ATOM 432 O ARG 112 28.702 41.138 -9.677 1.00 3.00 O ATOM 433 N ALA 113 27.983 41.511 -7.581 1.00 3.00 N ATOM 434 CA ALA 113 29.193 40.950 -6.963 1.00 3.00 C ATOM 435 C ALA 113 28.764 39.607 -6.399 1.00 3.00 C ATOM 436 O ALA 113 28.048 39.545 -5.410 1.00 3.00 O ATOM 437 N ILE 114 29.207 38.534 -7.046 1.00 3.00 N ATOM 438 CA ILE 114 28.808 37.195 -6.656 1.00 3.00 C ATOM 439 C ILE 114 29.962 36.358 -6.123 1.00 3.00 C ATOM 440 O ILE 114 31.127 36.624 -6.417 1.00 3.00 O ATOM 441 N TRP 115 29.615 35.353 -5.338 1.00 3.00 N ATOM 442 CA TRP 115 30.601 34.432 -4.776 1.00 3.00 C ATOM 443 C TRP 115 29.869 33.193 -4.289 1.00 3.00 C ATOM 444 O TRP 115 28.670 33.240 -4.029 1.00 3.00 O ATOM 445 N ASN 116 30.597 32.085 -4.179 1.00 3.00 N ATOM 446 CA ASN 116 30.031 30.803 -3.760 1.00 3.00 C ATOM 447 C ASN 116 29.377 30.830 -2.392 1.00 3.00 C ATOM 448 O ASN 116 28.346 30.189 -2.171 1.00 3.00 O ATOM 449 N ASP 117 29.994 31.550 -1.465 1.00 3.00 N ATOM 450 CA ASP 117 29.450 31.662 -0.123 1.00 3.00 C ATOM 451 C ASP 117 29.545 33.105 0.337 1.00 3.00 C ATOM 452 O ASP 117 30.299 33.896 -0.222 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 356 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 95.02 40.9 176 100.0 176 ARMSMC SECONDARY STRUCTURE . . 94.54 40.5 84 100.0 84 ARMSMC SURFACE . . . . . . . . 96.28 38.7 106 100.0 106 ARMSMC BURIED . . . . . . . . 93.08 44.3 70 100.0 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 36 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 53 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.30 (Number of atoms: 89) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.30 89 100.0 89 CRMSCA CRN = ALL/NP . . . . . 0.1719 CRMSCA SECONDARY STRUCTURE . . 16.11 42 100.0 42 CRMSCA SURFACE . . . . . . . . 15.71 54 100.0 54 CRMSCA BURIED . . . . . . . . 14.66 35 100.0 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.14 356 81.1 439 CRMSMC SECONDARY STRUCTURE . . 15.90 168 81.2 207 CRMSMC SURFACE . . . . . . . . 15.51 216 80.6 268 CRMSMC BURIED . . . . . . . . 14.55 140 81.9 171 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 383 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 333 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 192 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 225 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 158 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.14 356 48.2 739 CRMSALL SECONDARY STRUCTURE . . 15.90 168 46.7 360 CRMSALL SURFACE . . . . . . . . 15.51 216 49.0 441 CRMSALL BURIED . . . . . . . . 14.55 140 47.0 298 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.805 0.574 0.289 89 100.0 89 ERRCA SECONDARY STRUCTURE . . 11.838 0.610 0.305 42 100.0 42 ERRCA SURFACE . . . . . . . . 10.927 0.563 0.285 54 100.0 54 ERRCA BURIED . . . . . . . . 10.617 0.592 0.296 35 100.0 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.670 0.573 0.288 356 81.1 439 ERRMC SECONDARY STRUCTURE . . 11.713 0.613 0.306 168 81.2 207 ERRMC SURFACE . . . . . . . . 10.746 0.560 0.284 216 80.6 268 ERRMC BURIED . . . . . . . . 10.552 0.592 0.296 140 81.9 171 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 383 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 333 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 192 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 225 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 158 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.670 0.573 0.288 356 48.2 739 ERRALL SECONDARY STRUCTURE . . 11.713 0.613 0.306 168 46.7 360 ERRALL SURFACE . . . . . . . . 10.746 0.560 0.284 216 49.0 441 ERRALL BURIED . . . . . . . . 10.552 0.592 0.296 140 47.0 298 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 5 23 89 89 DISTCA CA (P) 0.00 0.00 0.00 5.62 25.84 89 DISTCA CA (RMS) 0.00 0.00 0.00 4.70 7.41 DISTCA ALL (N) 0 0 1 15 97 356 739 DISTALL ALL (P) 0.00 0.00 0.14 2.03 13.13 739 DISTALL ALL (RMS) 0.00 0.00 2.63 4.43 7.59 DISTALL END of the results output