####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 84 ( 336), selected 84 , name T0608AL285_1-D1 # Molecule2: number of CA atoms 89 ( 739), selected 84 , name T0608-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0608AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 37 - 70 4.97 16.31 LCS_AVERAGE: 26.47 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 29 - 39 1.72 23.20 LONGEST_CONTINUOUS_SEGMENT: 11 30 - 40 1.67 24.44 LCS_AVERAGE: 6.92 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 30 - 39 0.79 23.31 LCS_AVERAGE: 5.47 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 84 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 29 V 29 3 11 26 0 3 3 3 4 8 11 13 15 16 18 19 20 22 26 27 28 30 31 33 LCS_GDT S 30 S 30 10 11 26 7 8 10 11 11 11 14 16 17 18 20 22 24 25 26 27 28 30 33 35 LCS_GDT G 31 G 31 10 11 26 7 9 10 11 11 11 14 16 17 18 20 22 24 26 27 28 29 30 33 35 LCS_GDT F 32 F 32 10 11 26 7 9 10 11 11 11 14 16 17 18 20 22 24 26 27 28 29 30 33 35 LCS_GDT Q 33 Q 33 10 11 27 7 9 10 11 11 11 14 16 17 18 20 22 24 26 27 28 29 30 33 35 LCS_GDT R 34 R 34 10 11 29 7 9 10 11 11 11 14 16 17 19 23 24 27 31 33 34 36 38 39 40 LCS_GDT L 35 L 35 10 11 29 7 9 10 11 11 11 14 16 17 19 23 25 28 31 33 34 36 38 39 40 LCS_GDT Q 36 Q 36 10 11 31 7 9 10 11 11 11 14 16 17 19 23 24 27 31 33 34 36 38 39 40 LCS_GDT K 37 K 37 10 11 33 3 9 10 11 11 11 14 16 17 19 23 24 28 31 33 34 36 38 39 40 LCS_GDT P 38 P 38 10 11 33 3 9 10 11 11 11 14 17 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT V 39 V 39 10 11 33 3 9 10 11 11 11 14 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT V 40 V 40 3 11 33 3 3 4 5 8 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT S 41 S 41 3 4 33 3 3 4 6 8 10 12 15 22 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT Q 42 Q 42 7 7 33 7 7 7 7 8 10 12 15 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT P 43 P 43 7 7 33 7 7 7 7 8 11 14 16 22 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT D 44 D 44 7 7 33 7 7 7 7 7 9 14 16 22 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT F 45 F 45 7 7 33 7 7 7 7 8 10 14 16 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT R 46 R 46 7 7 33 7 7 7 7 7 11 14 16 17 21 25 29 30 32 34 35 36 38 39 40 LCS_GDT R 47 R 47 7 7 33 7 7 7 7 7 7 9 15 17 19 25 29 30 32 34 35 36 38 39 40 LCS_GDT Q 48 Q 48 7 7 33 7 7 7 7 8 11 14 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT P 49 P 49 3 3 33 3 3 4 11 11 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT V 50 V 50 3 7 33 3 3 4 6 9 10 15 17 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT S 51 S 51 5 7 33 4 5 5 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT E 52 E 52 5 7 33 4 5 5 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT T 53 T 53 5 7 33 4 5 5 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT M 54 M 54 5 7 33 4 5 5 7 8 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT Q 55 Q 55 5 7 33 4 5 5 7 8 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT V 56 V 56 5 7 33 4 4 6 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT Y 57 Y 57 5 7 33 4 4 6 7 7 7 9 11 15 19 23 26 29 31 34 35 36 38 39 40 LCS_GDT L 58 L 58 5 7 33 4 4 6 7 7 7 9 15 18 24 27 29 30 32 34 35 36 38 39 40 LCS_GDT K 59 K 59 5 7 33 4 4 6 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT Q 60 Q 60 5 7 33 3 4 6 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT A 61 A 61 5 7 33 3 4 6 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT A 62 A 62 4 7 33 3 4 5 7 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT D 63 D 63 0 7 33 0 0 3 4 6 10 12 17 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT G 65 G 65 3 3 33 0 3 3 5 5 9 11 13 17 19 22 28 30 31 34 35 36 38 39 40 LCS_GDT R 66 R 66 3 3 33 1 3 5 6 9 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT D 67 D 67 3 3 33 1 3 3 6 7 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT V 68 V 68 3 3 33 0 3 3 4 4 7 8 10 14 19 20 23 30 32 34 35 36 38 39 40 LCS_GDT G 69 G 69 3 3 33 3 3 3 4 6 8 14 16 20 25 27 29 30 32 34 35 36 38 39 40 LCS_GDT L 70 L 70 3 3 33 3 3 3 4 6 7 7 10 15 18 20 25 30 32 34 35 35 38 39 40 LCS_GDT Y 71 Y 71 3 3 25 3 3 3 4 6 6 7 10 12 14 16 18 21 27 31 33 35 38 39 40 LCS_GDT W 72 W 72 3 3 20 3 3 3 5 6 6 7 10 11 11 16 18 20 22 22 28 35 38 38 40 LCS_GDT M 73 M 73 3 3 20 3 3 3 5 6 6 8 10 10 11 16 18 20 22 22 30 35 38 38 40 LCS_GDT A 74 A 74 5 7 20 2 3 6 7 8 11 13 15 15 15 16 18 19 22 22 27 29 30 36 39 LCS_GDT T 75 T 75 6 7 20 3 5 6 7 8 11 13 15 15 15 16 17 18 19 22 24 27 30 32 34 LCS_GDT D 76 D 76 6 7 20 3 5 6 7 8 11 13 15 15 15 16 17 18 19 20 21 23 24 27 27 LCS_GDT F 77 F 77 6 7 20 3 5 6 7 8 11 12 15 15 15 16 17 18 19 20 20 20 21 25 27 LCS_GDT E 78 E 78 6 7 20 3 5 6 7 8 11 12 15 15 15 16 17 18 19 20 21 23 25 27 29 LCS_GDT N 79 N 79 6 7 20 3 5 6 7 8 11 13 15 15 15 16 17 18 19 20 22 25 28 30 32 LCS_GDT R 80 R 80 6 7 20 3 5 6 7 8 11 13 15 15 15 16 17 19 20 22 27 29 30 32 35 LCS_GDT R 81 R 81 4 7 20 3 4 4 5 8 11 13 15 15 15 16 18 19 20 22 27 29 30 32 35 LCS_GDT F 82 F 82 4 6 20 3 4 4 5 7 9 13 15 15 15 16 17 18 19 22 27 29 30 32 35 LCS_GDT P 83 P 83 4 6 20 3 4 5 7 8 11 13 15 15 15 16 17 18 19 22 25 28 30 33 35 LCS_GDT G 84 G 84 4 6 20 3 4 5 7 8 11 13 15 15 15 16 17 18 19 20 22 25 29 32 35 LCS_GDT K 85 K 85 4 6 20 3 4 5 7 8 11 13 15 15 15 16 17 18 19 20 22 25 28 32 33 LCS_GDT V 86 V 86 4 6 20 3 4 4 5 6 10 13 15 15 15 16 17 18 19 20 22 26 31 36 39 LCS_GDT S 87 S 87 4 6 20 3 4 4 7 8 11 13 15 15 15 16 17 18 19 20 24 27 30 36 39 LCS_GDT P 88 P 88 3 6 20 0 3 4 5 8 10 13 15 15 15 16 17 18 19 20 22 26 31 36 39 LCS_GDT S 89 S 89 3 4 20 0 3 3 4 4 5 7 11 12 14 16 17 18 19 20 22 25 31 36 39 LCS_GDT G 90 G 90 3 3 20 1 3 3 3 4 6 7 10 13 16 20 24 30 31 34 35 36 38 39 40 LCS_GDT F 91 F 91 3 3 12 3 3 3 3 4 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT Q 92 Q 92 3 3 12 3 3 4 4 5 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 LCS_GDT K 93 K 93 4 5 12 4 4 4 4 5 6 7 9 13 15 20 22 28 31 32 34 36 37 39 40 LCS_GDT L 94 L 94 4 5 12 4 4 4 4 5 5 8 10 14 17 21 23 25 30 30 34 35 37 39 40 LCS_GDT Y 95 Y 95 4 5 12 4 4 4 4 5 5 6 10 10 13 15 21 21 23 26 28 29 33 37 40 LCS_GDT R 96 R 96 4 5 12 4 4 4 4 5 5 6 10 12 14 15 16 19 22 26 27 28 36 37 38 LCS_GDT Q 97 Q 97 3 5 12 3 3 3 4 5 5 7 8 12 14 15 16 17 19 23 33 35 36 37 38 LCS_GDT W 98 W 98 3 3 12 3 3 3 4 5 6 7 8 12 14 15 16 17 19 20 21 35 36 37 38 LCS_GDT R 99 R 99 3 4 12 0 3 4 4 5 6 7 9 12 14 15 16 17 19 20 29 30 33 35 36 LCS_GDT N 100 N 100 3 4 12 3 3 4 4 4 4 5 9 12 14 15 16 17 19 20 21 22 25 26 29 LCS_GDT Q 101 Q 101 3 4 12 3 3 4 4 4 4 5 9 12 14 15 16 18 23 26 29 30 33 35 36 LCS_GDT T 102 T 102 3 4 12 3 3 3 4 4 4 5 9 12 14 15 16 17 19 20 21 22 29 30 36 LCS_GDT Y 107 Y 107 4 4 11 4 4 4 5 5 6 7 8 11 11 15 16 19 23 25 26 26 26 28 31 LCS_GDT V 108 V 108 4 4 11 4 4 4 5 5 6 7 7 11 11 15 16 20 23 25 26 26 26 27 28 LCS_GDT Q 109 Q 109 4 4 11 4 4 4 5 5 6 8 10 13 15 17 20 21 23 25 26 26 26 27 28 LCS_GDT S 110 S 110 4 4 11 4 4 4 5 5 6 8 10 13 15 17 20 21 23 25 26 26 26 27 28 LCS_GDT C 111 C 111 3 4 11 3 3 4 4 4 6 8 10 13 15 17 20 21 23 25 26 27 29 33 35 LCS_GDT R 112 R 112 3 4 11 1 3 3 3 4 4 6 8 12 15 17 20 21 23 26 27 29 30 33 35 LCS_GDT A 113 A 113 3 5 11 3 3 3 4 5 6 8 10 13 15 17 20 21 23 26 27 29 30 33 35 LCS_GDT I 114 I 114 4 5 11 3 4 4 4 5 6 7 10 13 15 17 20 21 23 25 27 29 30 32 35 LCS_GDT W 115 W 115 4 5 11 3 4 4 4 5 6 7 7 13 15 17 20 21 23 26 27 29 30 33 35 LCS_GDT N 116 N 116 4 5 11 3 4 4 4 5 6 7 10 13 15 17 20 21 23 26 27 29 30 33 35 LCS_GDT D 117 D 117 4 5 11 3 4 4 4 5 6 8 10 13 15 17 20 21 23 26 27 29 30 33 35 LCS_AVERAGE LCS_A: 12.95 ( 5.47 6.92 26.47 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 9 10 11 11 11 15 18 23 26 27 29 30 32 34 35 36 38 39 40 GDT PERCENT_AT 7.87 10.11 11.24 12.36 12.36 12.36 16.85 20.22 25.84 29.21 30.34 32.58 33.71 35.96 38.20 39.33 40.45 42.70 43.82 44.94 GDT RMS_LOCAL 0.24 0.77 0.79 1.18 1.18 1.18 2.69 2.94 3.40 3.66 3.77 3.99 4.11 4.47 4.70 4.82 5.40 5.61 5.71 5.84 GDT RMS_ALL_AT 23.27 23.37 23.31 23.58 23.58 23.58 16.24 16.22 16.15 16.21 16.18 16.28 16.34 16.24 16.16 16.19 16.49 16.20 16.26 16.17 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 29 V 29 25.596 3 0.222 0.222 26.787 0.000 0.000 LGA S 30 S 30 20.297 2 0.563 0.563 22.555 0.000 0.000 LGA G 31 G 31 17.012 0 0.018 0.018 18.306 0.000 0.000 LGA F 32 F 32 20.525 7 0.024 0.024 20.525 0.000 0.000 LGA Q 33 Q 33 19.679 5 0.024 0.024 20.040 0.000 0.000 LGA R 34 R 34 13.114 7 0.034 0.034 15.590 0.000 0.000 LGA L 35 L 35 12.235 4 0.126 0.126 12.880 0.000 0.000 LGA Q 36 Q 36 15.103 5 0.088 0.088 15.103 0.000 0.000 LGA K 37 K 37 11.480 5 0.686 0.686 12.398 3.214 1.429 LGA P 38 P 38 5.360 3 0.694 0.694 7.998 26.905 15.374 LGA V 39 V 39 3.253 3 0.653 0.653 4.194 45.357 25.918 LGA V 40 V 40 1.675 3 0.589 0.589 3.779 57.738 32.993 LGA S 41 S 41 6.444 2 0.220 0.220 8.160 16.667 11.111 LGA Q 42 Q 42 5.564 5 0.628 0.628 5.564 30.476 13.545 LGA P 43 P 43 5.515 3 0.055 0.055 5.861 23.929 13.673 LGA D 44 D 44 6.646 4 0.049 0.049 6.646 22.024 11.012 LGA F 45 F 45 5.123 7 0.011 0.011 5.307 28.810 10.476 LGA R 46 R 46 6.578 7 0.068 0.068 8.447 15.714 5.714 LGA R 47 R 47 7.344 7 0.132 0.132 7.423 13.571 4.935 LGA Q 48 Q 48 4.194 5 0.455 0.455 4.754 40.476 17.989 LGA P 49 P 49 2.192 3 0.575 0.575 4.130 55.952 31.973 LGA V 50 V 50 4.113 3 0.612 0.612 5.029 40.952 23.401 LGA S 51 S 51 3.210 2 0.674 0.674 3.210 59.167 39.444 LGA E 52 E 52 3.193 5 0.041 0.041 3.246 57.381 25.503 LGA T 53 T 53 2.526 3 0.133 0.133 3.030 59.167 33.810 LGA M 54 M 54 3.068 4 0.072 0.072 4.008 52.500 26.250 LGA Q 55 Q 55 3.226 5 0.589 0.589 3.226 57.500 25.556 LGA V 56 V 56 2.878 3 0.593 0.593 4.018 52.619 30.068 LGA Y 57 Y 57 6.664 8 0.309 0.309 7.644 15.952 5.317 LGA L 58 L 58 5.537 4 0.026 0.026 5.537 29.048 14.524 LGA K 59 K 59 1.377 5 0.080 0.080 2.548 82.262 36.561 LGA Q 60 Q 60 2.382 5 0.391 0.391 4.727 58.690 26.085 LGA A 61 A 61 2.748 1 0.067 0.067 2.748 69.048 55.238 LGA A 62 A 62 0.658 1 0.428 0.428 3.072 69.524 55.619 LGA D 63 D 63 5.002 4 0.473 0.473 7.520 25.119 12.560 LGA G 65 G 65 8.133 0 0.597 0.597 8.133 10.595 10.595 LGA R 66 R 66 3.531 7 0.564 0.564 5.300 44.167 16.061 LGA D 67 D 67 3.395 4 0.592 0.592 6.018 35.833 17.917 LGA V 68 V 68 7.774 3 0.629 0.629 7.774 15.714 8.980 LGA G 69 G 69 5.063 0 0.608 0.608 5.978 26.310 26.310 LGA L 70 L 70 7.712 4 0.617 0.617 8.379 8.095 4.048 LGA Y 71 Y 71 11.305 8 0.584 0.584 11.871 0.000 0.000 LGA W 72 W 72 11.766 10 0.654 0.654 11.766 0.000 0.000 LGA M 73 M 73 12.409 4 0.605 0.605 14.215 0.000 0.000 LGA A 74 A 74 18.268 1 0.654 0.654 19.862 0.000 0.000 LGA T 75 T 75 21.393 3 0.690 0.690 21.393 0.000 0.000 LGA D 76 D 76 21.203 4 0.334 0.334 22.783 0.000 0.000 LGA F 77 F 77 25.338 7 0.612 0.612 25.707 0.000 0.000 LGA E 78 E 78 28.030 5 0.102 0.102 28.030 0.000 0.000 LGA N 79 N 79 25.124 4 0.655 0.655 25.721 0.000 0.000 LGA R 80 R 80 23.724 7 0.116 0.116 25.497 0.000 0.000 LGA R 81 R 81 26.415 7 0.661 0.661 26.415 0.000 0.000 LGA F 82 F 82 25.105 7 0.621 0.621 25.511 0.000 0.000 LGA P 83 P 83 24.449 3 0.656 0.656 25.448 0.000 0.000 LGA G 84 G 84 23.376 0 0.173 0.173 23.449 0.000 0.000 LGA K 85 K 85 22.439 5 0.033 0.033 22.699 0.000 0.000 LGA V 86 V 86 17.750 3 0.197 0.197 19.576 0.000 0.000 LGA S 87 S 87 19.438 2 0.670 0.670 19.438 0.000 0.000 LGA P 88 P 88 17.008 3 0.603 0.603 18.184 0.000 0.000 LGA S 89 S 89 14.472 2 0.643 0.643 15.143 0.000 0.000 LGA G 90 G 90 7.487 0 0.594 0.594 10.151 11.071 11.071 LGA F 91 F 91 3.609 7 0.620 0.620 4.854 40.476 14.719 LGA Q 92 Q 92 3.536 5 0.593 0.593 6.669 30.357 13.492 LGA K 93 K 93 9.227 5 0.566 0.566 10.760 3.690 1.640 LGA L 94 L 94 12.430 4 0.048 0.048 15.267 0.000 0.000 LGA Y 95 Y 95 14.583 8 0.340 0.340 17.581 0.000 0.000 LGA R 96 R 96 15.264 7 0.622 0.622 16.616 0.000 0.000 LGA Q 97 Q 97 13.475 5 0.526 0.526 16.671 0.000 0.000 LGA W 98 W 98 14.026 10 0.662 0.662 14.035 0.000 0.000 LGA R 99 R 99 15.371 7 0.657 0.657 19.787 0.000 0.000 LGA N 100 N 100 19.185 4 0.695 0.695 19.185 0.000 0.000 LGA Q 101 Q 101 17.522 5 0.018 0.018 21.018 0.000 0.000 LGA T 102 T 102 21.103 3 0.096 0.096 21.103 0.000 0.000 LGA Y 107 Y 107 22.507 8 0.546 0.546 23.342 0.000 0.000 LGA V 108 V 108 26.282 3 0.018 0.018 28.527 0.000 0.000 LGA Q 109 Q 109 30.427 5 0.268 0.268 30.427 0.000 0.000 LGA S 110 S 110 24.869 2 0.294 0.294 26.551 0.000 0.000 LGA C 111 C 111 21.688 2 0.593 0.593 22.989 0.000 0.000 LGA R 112 R 112 22.357 7 0.642 0.642 24.745 0.000 0.000 LGA A 113 A 113 26.459 1 0.639 0.639 26.459 0.000 0.000 LGA I 114 I 114 23.983 4 0.601 0.601 26.415 0.000 0.000 LGA W 115 W 115 24.677 10 0.075 0.075 28.008 0.000 0.000 LGA N 116 N 116 28.903 4 0.083 0.083 32.543 0.000 0.000 LGA D 117 D 117 33.211 4 0.122 0.122 34.837 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 84 336 336 100.00 701 336 47.93 89 SUMMARY(RMSD_GDC): 14.083 13.950 13.950 15.012 8.212 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 84 89 4.0 18 2.94 20.506 17.306 0.592 LGA_LOCAL RMSD: 2.943 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.217 Number of assigned atoms: 84 Std_ASGN_ATOMS RMSD: 14.083 Standard rmsd on all 84 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.185842 * X + -0.030440 * Y + 0.982108 * Z + 46.384426 Y_new = -0.763918 * X + -0.624152 * Y + -0.163900 * Z + 81.145622 Z_new = 0.617974 * X + -0.780710 * Y + 0.092740 * Z + 2.153499 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.809435 -0.666163 -1.452561 [DEG: -103.6730 -38.1683 -83.2256 ] ZXZ: 1.405434 1.477923 2.472023 [DEG: 80.5255 84.6788 141.6365 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0608AL285_1-D1 REMARK 2: T0608-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0608AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 84 89 4.0 18 2.94 17.306 14.08 REMARK ---------------------------------------------------------- MOLECULE T0608AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2gu1A ATOM 45 N VAL 29 21.878 33.245 3.156 1.00 0.00 N ATOM 46 CA VAL 29 23.031 32.788 3.918 1.00 0.00 C ATOM 47 C VAL 29 23.053 33.713 5.132 1.00 0.00 C ATOM 48 O VAL 29 22.297 34.687 5.170 1.00 0.00 O ATOM 49 N SER 30 23.892 33.425 6.122 1.00 0.00 N ATOM 50 CA SER 30 23.944 34.293 7.294 1.00 0.00 C ATOM 51 C SER 30 24.121 35.759 6.903 1.00 0.00 C ATOM 52 O SER 30 23.383 36.624 7.371 1.00 0.00 O ATOM 53 N GLY 31 25.098 36.036 6.045 1.00 0.00 N ATOM 54 CA GLY 31 25.367 37.409 5.621 1.00 0.00 C ATOM 55 C GLY 31 24.153 38.116 5.030 1.00 0.00 C ATOM 56 O GLY 31 23.846 39.250 5.404 1.00 0.00 O ATOM 57 N PHE 32 23.466 37.444 4.113 1.00 0.00 N ATOM 58 CA PHE 32 22.289 38.011 3.465 1.00 0.00 C ATOM 59 C PHE 32 21.170 38.258 4.467 1.00 0.00 C ATOM 60 O PHE 32 20.588 39.344 4.510 1.00 0.00 O ATOM 61 N GLN 33 20.880 37.238 5.268 1.00 0.00 N ATOM 62 CA GLN 33 19.836 37.320 6.279 1.00 0.00 C ATOM 63 C GLN 33 20.152 38.378 7.338 1.00 0.00 C ATOM 64 O GLN 33 19.250 39.044 7.849 1.00 0.00 O ATOM 65 N ARG 34 21.435 38.525 7.661 1.00 0.00 N ATOM 66 CA ARG 34 21.883 39.500 8.654 1.00 0.00 C ATOM 67 C ARG 34 21.687 40.921 8.125 1.00 0.00 C ATOM 68 O ARG 34 21.249 41.816 8.856 1.00 0.00 O ATOM 69 N LEU 35 22.020 41.123 6.853 1.00 0.00 N ATOM 70 CA LEU 35 21.866 42.430 6.226 1.00 0.00 C ATOM 71 C LEU 35 20.382 42.777 6.100 1.00 0.00 C ATOM 72 O LEU 35 19.976 43.916 6.337 1.00 0.00 O ATOM 73 N GLN 36 19.567 41.791 5.740 1.00 0.00 N ATOM 74 CA GLN 36 18.133 42.024 5.584 1.00 0.00 C ATOM 75 C GLN 36 17.438 42.428 6.881 1.00 0.00 C ATOM 76 O GLN 36 16.432 43.146 6.853 1.00 0.00 O ATOM 77 N LYS 37 17.974 41.982 8.016 1.00 0.00 N ATOM 78 CA LYS 37 17.371 42.310 9.301 1.00 0.00 C ATOM 79 C LYS 37 17.908 43.608 9.921 1.00 0.00 C ATOM 80 O LYS 37 17.497 43.989 11.018 1.00 0.00 O ATOM 81 N PRO 38 18.828 44.284 9.238 1.00 0.00 N ATOM 82 CA PRO 38 19.331 45.542 9.773 1.00 0.00 C ATOM 83 C PRO 38 20.815 45.686 10.069 1.00 0.00 C ATOM 84 O PRO 38 21.309 46.801 10.220 1.00 0.00 O ATOM 85 N VAL 39 21.536 44.578 10.168 1.00 0.00 N ATOM 86 CA VAL 39 22.967 44.654 10.445 1.00 0.00 C ATOM 87 C VAL 39 23.718 45.210 9.233 1.00 0.00 C ATOM 88 O VAL 39 23.329 44.963 8.089 1.00 0.00 O ATOM 89 N VAL 40 24.787 45.960 9.487 1.00 0.00 N ATOM 90 CA VAL 40 25.588 46.536 8.414 1.00 0.00 C ATOM 91 C VAL 40 26.668 45.554 7.966 1.00 0.00 C ATOM 92 O VAL 40 26.864 44.499 8.584 1.00 0.00 O ATOM 93 N SER 41 27.370 45.912 6.895 1.00 0.00 N ATOM 94 CA SER 41 28.440 45.075 6.366 1.00 0.00 C ATOM 95 C SER 41 29.543 44.921 7.404 1.00 0.00 C ATOM 96 O SER 41 30.055 43.818 7.614 1.00 0.00 O ATOM 97 N GLN 42 29.907 46.030 8.048 1.00 0.00 N ATOM 98 CA GLN 42 30.959 46.003 9.062 1.00 0.00 C ATOM 99 C GLN 42 30.551 45.148 10.263 1.00 0.00 C ATOM 100 O GLN 42 31.379 44.449 10.843 1.00 0.00 O ATOM 101 N PRO 43 29.277 45.202 10.634 1.00 0.00 N ATOM 102 CA PRO 43 28.801 44.398 11.753 1.00 0.00 C ATOM 103 C PRO 43 28.863 42.922 11.371 1.00 0.00 C ATOM 104 O PRO 43 29.251 42.085 12.184 1.00 0.00 O ATOM 105 N ASP 44 28.500 42.610 10.130 1.00 0.00 N ATOM 106 CA ASP 44 28.539 41.230 9.655 1.00 0.00 C ATOM 107 C ASP 44 29.990 40.750 9.641 1.00 0.00 C ATOM 108 O ASP 44 30.284 39.615 10.029 1.00 0.00 O ATOM 109 N PHE 45 30.895 41.620 9.199 1.00 0.00 N ATOM 110 CA PHE 45 32.313 41.285 9.157 1.00 0.00 C ATOM 111 C PHE 45 32.818 41.018 10.577 1.00 0.00 C ATOM 112 O PHE 45 33.508 40.031 10.824 1.00 0.00 O ATOM 113 N ARG 46 32.465 41.898 11.509 1.00 0.00 N ATOM 114 CA ARG 46 32.884 41.740 12.902 1.00 0.00 C ATOM 115 C ARG 46 32.387 40.395 13.426 1.00 0.00 C ATOM 116 O ARG 46 33.130 39.647 14.066 1.00 0.00 O ATOM 117 N ARG 47 31.130 40.081 13.137 1.00 0.00 N ATOM 118 CA ARG 47 30.539 38.822 13.579 1.00 0.00 C ATOM 119 C ARG 47 31.256 37.601 12.999 1.00 0.00 C ATOM 120 O ARG 47 31.633 36.686 13.738 1.00 0.00 O ATOM 121 N GLN 48 31.447 37.577 11.682 1.00 0.00 N ATOM 122 CA GLN 48 32.115 36.438 11.062 1.00 0.00 C ATOM 123 C GLN 48 33.553 36.312 11.561 1.00 0.00 C ATOM 124 O GLN 48 34.070 35.204 11.704 1.00 0.00 O ATOM 125 N PRO 49 34.184 37.449 11.843 1.00 0.00 N ATOM 126 CA PRO 49 35.557 37.469 12.349 1.00 0.00 C ATOM 127 C PRO 49 35.619 36.809 13.723 1.00 0.00 C ATOM 128 O PRO 49 36.400 35.891 13.946 1.00 0.00 O ATOM 129 N VAL 50 34.782 37.283 14.641 1.00 0.00 N ATOM 130 CA VAL 50 34.733 36.750 15.997 1.00 0.00 C ATOM 131 C VAL 50 34.409 35.259 16.057 1.00 0.00 C ATOM 132 O VAL 50 35.047 34.511 16.795 1.00 0.00 O ATOM 133 N SER 51 33.423 34.831 15.278 1.00 0.00 N ATOM 134 CA SER 51 32.989 33.434 15.292 1.00 0.00 C ATOM 135 C SER 51 33.687 32.473 14.323 1.00 0.00 C ATOM 136 O SER 51 33.324 31.297 14.265 1.00 0.00 O ATOM 137 N GLU 52 34.685 32.945 13.584 1.00 0.00 N ATOM 138 CA GLU 52 35.349 32.090 12.593 1.00 0.00 C ATOM 139 C GLU 52 35.831 30.707 13.045 1.00 0.00 C ATOM 140 O GLU 52 35.739 29.747 12.285 1.00 0.00 O ATOM 141 N THR 53 36.337 30.592 14.267 1.00 0.00 N ATOM 142 CA THR 53 36.818 29.300 14.750 1.00 0.00 C ATOM 143 C THR 53 35.712 28.419 15.324 1.00 0.00 C ATOM 144 O THR 53 35.836 27.193 15.355 1.00 0.00 O ATOM 145 N MET 54 34.630 29.041 15.776 1.00 0.00 N ATOM 146 CA MET 54 33.522 28.293 16.351 1.00 0.00 C ATOM 147 C MET 54 32.485 27.932 15.291 1.00 0.00 C ATOM 148 O MET 54 31.704 27.000 15.477 1.00 0.00 O ATOM 149 N GLN 55 32.486 28.662 14.177 1.00 0.00 N ATOM 150 CA GLN 55 31.527 28.412 13.104 1.00 0.00 C ATOM 151 C GLN 55 32.139 28.451 11.704 1.00 0.00 C ATOM 152 O GLN 55 32.897 29.361 11.367 1.00 0.00 O ATOM 153 N VAL 56 31.799 27.450 10.897 1.00 0.00 N ATOM 154 CA VAL 56 32.261 27.368 9.516 1.00 0.00 C ATOM 155 C VAL 56 31.094 27.930 8.714 1.00 0.00 C ATOM 156 O VAL 56 30.125 27.219 8.447 1.00 0.00 O ATOM 157 N TYR 57 31.181 29.207 8.346 1.00 0.00 N ATOM 158 CA TYR 57 30.111 29.858 7.597 1.00 0.00 C ATOM 159 C TYR 57 29.931 29.318 6.182 1.00 0.00 C ATOM 160 O TYR 57 29.334 29.972 5.324 1.00 0.00 O ATOM 161 N LEU 58 30.432 28.111 5.952 1.00 0.00 N ATOM 162 CA LEU 58 30.327 27.471 4.650 1.00 0.00 C ATOM 163 C LEU 58 29.606 26.130 4.776 1.00 0.00 C ATOM 164 O LEU 58 28.873 25.723 3.876 1.00 0.00 O ATOM 165 N LYS 59 29.810 25.454 5.902 1.00 0.00 N ATOM 166 CA LYS 59 29.207 24.147 6.130 1.00 0.00 C ATOM 167 C LYS 59 27.986 24.144 7.050 1.00 0.00 C ATOM 168 O LYS 59 27.034 23.392 6.821 1.00 0.00 O ATOM 169 N GLN 60 28.017 24.975 8.088 1.00 0.00 N ATOM 170 CA GLN 60 26.921 25.056 9.054 1.00 0.00 C ATOM 171 C GLN 60 25.772 25.893 8.520 1.00 0.00 C ATOM 172 O GLN 60 25.643 27.085 8.836 1.00 0.00 O ATOM 173 N ALA 61 24.955 25.243 7.706 1.00 0.00 N ATOM 174 CA ALA 61 23.835 25.894 7.091 1.00 0.00 C ATOM 175 C ALA 61 22.548 25.150 7.371 1.00 0.00 C ATOM 176 O ALA 61 22.387 23.913 7.126 1.00 0.00 O ATOM 177 N ALA 62 21.647 26.006 7.755 1.00 0.00 N ATOM 178 CA ALA 62 20.285 25.829 8.265 1.00 0.00 C ATOM 179 C ALA 62 18.972 25.146 7.817 1.00 0.00 C ATOM 180 O ALA 62 18.822 24.163 7.023 1.00 0.00 O ATOM 181 N ASP 63 18.003 25.899 8.346 1.00 0.00 N ATOM 182 CA ASP 63 16.616 25.557 8.395 1.00 0.00 C ATOM 183 C ASP 63 15.959 26.802 9.067 1.00 0.00 C ATOM 184 O ASP 63 14.759 27.117 8.955 1.00 0.00 O ATOM 185 N GLY 65 18.475 27.000 10.876 1.00 0.00 N ATOM 186 CA GLY 65 19.253 27.599 11.956 1.00 0.00 C ATOM 187 C GLY 65 18.967 29.099 12.038 1.00 0.00 C ATOM 188 O GLY 65 18.637 29.731 11.033 1.00 0.00 O ATOM 189 N ARG 66 19.076 29.662 13.238 1.00 0.00 N ATOM 190 CA ARG 66 18.843 31.088 13.428 1.00 0.00 C ATOM 191 C ARG 66 19.929 31.733 14.288 1.00 0.00 C ATOM 192 O ARG 66 20.771 31.044 14.861 1.00 0.00 O ATOM 193 N ASP 67 19.906 33.064 14.352 1.00 0.00 N ATOM 194 CA ASP 67 20.881 33.850 15.113 1.00 0.00 C ATOM 195 C ASP 67 20.223 35.034 15.832 1.00 0.00 C ATOM 196 O ASP 67 19.150 35.496 15.439 1.00 0.00 O ATOM 197 N VAL 68 20.881 35.520 16.882 1.00 0.00 N ATOM 198 CA VAL 68 20.401 36.661 17.663 1.00 0.00 C ATOM 199 C VAL 68 21.631 37.481 18.017 1.00 0.00 C ATOM 200 O VAL 68 22.559 36.959 18.627 1.00 0.00 O ATOM 201 N GLY 69 21.630 38.755 17.642 1.00 0.00 N ATOM 202 CA GLY 69 22.750 39.647 17.907 1.00 0.00 C ATOM 203 C GLY 69 22.294 40.794 18.802 1.00 0.00 C ATOM 204 O GLY 69 21.386 41.539 18.436 1.00 0.00 O ATOM 205 N LEU 70 22.912 40.942 19.969 1.00 0.00 N ATOM 206 CA LEU 70 22.542 42.045 20.865 1.00 0.00 C ATOM 207 C LEU 70 23.496 43.214 20.633 1.00 0.00 C ATOM 208 O LEU 70 24.707 43.081 20.813 1.00 0.00 O ATOM 209 N TYR 71 22.945 44.352 20.215 1.00 0.00 N ATOM 210 CA TYR 71 23.730 45.546 19.952 1.00 0.00 C ATOM 211 C TYR 71 23.290 46.704 20.857 1.00 0.00 C ATOM 212 O TYR 71 22.121 46.813 21.230 1.00 0.00 O ATOM 213 N TRP 72 24.246 47.544 21.220 1.00 0.00 N ATOM 214 CA TRP 72 23.976 48.719 22.030 1.00 0.00 C ATOM 215 C TRP 72 24.118 49.884 21.069 1.00 0.00 C ATOM 216 O TRP 72 25.125 49.995 20.372 1.00 0.00 O ATOM 217 N MET 73 23.099 50.735 21.016 1.00 0.00 N ATOM 218 CA MET 73 23.122 51.899 20.135 1.00 0.00 C ATOM 219 C MET 73 23.046 53.170 20.963 1.00 0.00 C ATOM 220 O MET 73 22.187 53.298 21.827 1.00 0.00 O ATOM 221 N ALA 74 23.944 54.110 20.695 1.00 0.00 N ATOM 222 CA ALA 74 23.944 55.358 21.437 1.00 0.00 C ATOM 223 C ALA 74 23.035 56.371 20.761 1.00 0.00 C ATOM 224 O ALA 74 23.046 56.526 19.535 1.00 0.00 O ATOM 225 N THR 75 22.228 57.036 21.576 1.00 0.00 N ATOM 226 CA THR 75 21.310 58.060 21.103 1.00 0.00 C ATOM 227 C THR 75 21.553 59.343 21.883 1.00 0.00 C ATOM 228 O THR 75 22.179 59.333 22.936 1.00 0.00 O ATOM 229 N ASP 76 21.077 60.446 21.329 1.00 0.00 N ATOM 230 CA ASP 76 21.159 61.743 21.976 1.00 0.00 C ATOM 231 C ASP 76 19.719 62.195 21.871 1.00 0.00 C ATOM 232 O ASP 76 19.251 62.541 20.788 1.00 0.00 O ATOM 233 N PHE 77 19.009 62.178 22.989 1.00 0.00 N ATOM 234 CA PHE 77 17.612 62.544 22.934 1.00 0.00 C ATOM 235 C PHE 77 16.953 61.520 22.028 1.00 0.00 C ATOM 236 O PHE 77 17.030 60.320 22.284 1.00 0.00 O ATOM 237 N GLU 78 16.349 61.985 20.942 1.00 0.00 N ATOM 238 CA GLU 78 15.664 61.102 20.007 1.00 0.00 C ATOM 239 C GLU 78 16.492 60.822 18.756 1.00 0.00 C ATOM 240 O GLU 78 16.030 60.146 17.832 1.00 0.00 O ATOM 241 N ASN 79 17.718 61.334 18.733 1.00 0.00 N ATOM 242 CA ASN 79 18.588 61.156 17.584 1.00 0.00 C ATOM 243 C ASN 79 19.646 60.080 17.769 1.00 0.00 C ATOM 244 O ASN 79 20.326 60.020 18.795 1.00 0.00 O ATOM 245 N ARG 80 19.762 59.229 16.757 1.00 0.00 N ATOM 246 CA ARG 80 20.735 58.152 16.750 1.00 0.00 C ATOM 247 C ARG 80 22.071 58.808 16.409 1.00 0.00 C ATOM 248 O ARG 80 22.190 59.512 15.407 1.00 0.00 O ATOM 249 N ARG 81 23.069 58.594 17.257 1.00 0.00 N ATOM 250 CA ARG 81 24.386 59.190 17.044 1.00 0.00 C ATOM 251 C ARG 81 25.180 58.451 15.976 1.00 0.00 C ATOM 252 O ARG 81 26.104 59.003 15.385 1.00 0.00 O ATOM 253 N PHE 82 24.806 57.205 15.720 1.00 0.00 N ATOM 254 CA PHE 82 25.526 56.413 14.743 1.00 0.00 C ATOM 255 C PHE 82 26.540 55.512 15.431 1.00 0.00 C ATOM 256 O PHE 82 27.115 54.612 14.810 1.00 0.00 O ATOM 257 N PRO 83 26.763 55.757 16.718 1.00 0.00 N ATOM 258 CA PRO 83 27.699 54.962 17.498 1.00 0.00 C ATOM 259 C PRO 83 26.977 53.703 17.979 1.00 0.00 C ATOM 260 O PRO 83 25.845 53.780 18.450 1.00 0.00 O ATOM 261 N GLY 84 27.627 52.546 17.845 1.00 0.00 N ATOM 262 CA GLY 84 27.030 51.284 18.275 1.00 0.00 C ATOM 263 C GLY 84 28.112 50.262 18.586 1.00 0.00 C ATOM 264 O GLY 84 29.258 50.418 18.166 1.00 0.00 O ATOM 265 N LYS 85 27.729 49.210 19.304 1.00 0.00 N ATOM 266 CA LYS 85 28.669 48.150 19.667 1.00 0.00 C ATOM 267 C LYS 85 27.932 46.836 19.891 1.00 0.00 C ATOM 268 O LYS 85 26.900 46.794 20.572 1.00 0.00 O ATOM 269 N VAL 86 28.443 45.771 19.287 1.00 0.00 N ATOM 270 CA VAL 86 27.850 44.447 19.442 1.00 0.00 C ATOM 271 C VAL 86 28.296 43.926 20.801 1.00 0.00 C ATOM 272 O VAL 86 29.493 43.936 21.110 1.00 0.00 O ATOM 273 N SER 87 27.344 43.459 21.604 1.00 0.00 N ATOM 274 CA SER 87 27.657 42.963 22.936 1.00 0.00 C ATOM 275 C SER 87 27.559 41.449 23.066 1.00 0.00 C ATOM 276 O SER 87 28.259 40.845 23.880 1.00 0.00 O ATOM 277 N PRO 88 26.696 40.838 22.267 1.00 0.00 N ATOM 278 CA PRO 88 26.518 39.399 22.321 1.00 0.00 C ATOM 279 C PRO 88 26.147 38.831 20.955 1.00 0.00 C ATOM 280 O PRO 88 25.471 39.479 20.155 1.00 0.00 O ATOM 281 N SER 89 26.589 37.603 20.717 1.00 0.00 N ATOM 282 CA SER 89 26.348 36.913 19.459 1.00 0.00 C ATOM 283 C SER 89 25.947 35.484 19.800 1.00 0.00 C ATOM 284 O SER 89 26.662 34.799 20.529 1.00 0.00 O ATOM 285 N GLY 90 24.805 35.031 19.300 1.00 0.00 N ATOM 286 CA GLY 90 24.395 33.661 19.584 1.00 0.00 C ATOM 287 C GLY 90 23.735 33.028 18.371 1.00 0.00 C ATOM 288 O GLY 90 22.893 33.642 17.717 1.00 0.00 O ATOM 289 N PHE 91 24.134 31.796 18.073 1.00 0.00 N ATOM 290 CA PHE 91 23.577 31.065 16.948 1.00 0.00 C ATOM 291 C PHE 91 22.845 29.820 17.431 1.00 0.00 C ATOM 292 O PHE 91 23.377 29.036 18.215 1.00 0.00 O ATOM 293 N GLN 92 21.613 29.656 16.972 1.00 0.00 N ATOM 294 CA GLN 92 20.825 28.486 17.328 1.00 0.00 C ATOM 295 C GLN 92 21.058 27.525 16.164 1.00 0.00 C ATOM 296 O GLN 92 20.385 27.600 15.139 1.00 0.00 O ATOM 297 N LYS 93 22.036 26.639 16.323 1.00 0.00 N ATOM 298 CA LYS 93 22.393 25.681 15.281 1.00 0.00 C ATOM 299 C LYS 93 21.907 24.264 15.544 1.00 0.00 C ATOM 300 O LYS 93 21.817 23.821 16.692 1.00 0.00 O ATOM 301 N LEU 94 21.603 23.552 14.463 1.00 0.00 N ATOM 302 CA LEU 94 21.159 22.173 14.571 1.00 0.00 C ATOM 303 C LEU 94 22.384 21.346 14.951 1.00 0.00 C ATOM 304 O LEU 94 22.281 20.352 15.669 1.00 0.00 O ATOM 305 N TYR 95 23.548 21.789 14.480 1.00 0.00 N ATOM 306 CA TYR 95 24.811 21.104 14.742 1.00 0.00 C ATOM 307 C TYR 95 25.498 21.582 16.022 1.00 0.00 C ATOM 308 O TYR 95 26.708 21.404 16.184 1.00 0.00 O ATOM 309 N ARG 96 24.726 22.183 16.928 1.00 0.00 N ATOM 310 CA ARG 96 25.279 22.670 18.184 1.00 0.00 C ATOM 311 C ARG 96 25.232 24.183 18.336 1.00 0.00 C ATOM 312 O ARG 96 25.762 24.912 17.498 1.00 0.00 O ATOM 313 N GLN 97 24.607 24.660 19.409 1.00 0.00 N ATOM 314 CA GLN 97 24.490 26.096 19.659 1.00 0.00 C ATOM 315 C GLN 97 25.812 26.747 20.049 1.00 0.00 C ATOM 316 O GLN 97 26.616 26.159 20.774 1.00 0.00 O ATOM 317 N TRP 98 26.023 27.968 19.567 1.00 0.00 N ATOM 318 CA TRP 98 27.240 28.714 19.864 1.00 0.00 C ATOM 319 C TRP 98 26.898 30.144 20.280 1.00 0.00 C ATOM 320 O TRP 98 26.003 30.764 19.711 1.00 0.00 O ATOM 321 N ARG 99 27.606 30.670 21.273 1.00 0.00 N ATOM 322 CA ARG 99 27.356 32.036 21.721 1.00 0.00 C ATOM 323 C ARG 99 28.620 32.684 22.278 1.00 0.00 C ATOM 324 O ARG 99 29.448 32.021 22.909 1.00 0.00 O ATOM 325 N ASN 100 28.771 33.981 22.029 1.00 0.00 N ATOM 326 CA ASN 100 29.930 34.726 22.496 1.00 0.00 C ATOM 327 C ASN 100 29.467 36.058 23.078 1.00 0.00 C ATOM 328 O ASN 100 28.474 36.631 22.623 1.00 0.00 O ATOM 329 N GLN 101 30.200 36.548 24.071 1.00 0.00 N ATOM 330 CA GLN 101 29.857 37.799 24.747 1.00 0.00 C ATOM 331 C GLN 101 31.077 38.694 24.878 1.00 0.00 C ATOM 332 O GLN 101 32.181 38.208 25.135 1.00 0.00 O ATOM 333 N THR 102 30.877 39.998 24.695 1.00 0.00 N ATOM 334 CA THR 102 31.964 40.968 24.802 1.00 0.00 C ATOM 335 C THR 102 32.259 41.195 26.283 1.00 0.00 C ATOM 336 O THR 102 31.386 41.610 27.028 1.00 0.00 O ATOM 337 N TYR 107 33.490 40.911 26.696 1.00 0.00 N ATOM 338 CA TYR 107 33.906 41.069 28.086 1.00 0.00 C ATOM 339 C TYR 107 34.517 42.442 28.358 1.00 0.00 C ATOM 340 O TYR 107 34.761 43.237 27.439 1.00 0.00 O ATOM 341 N VAL 108 34.777 42.685 29.637 1.00 0.00 N ATOM 342 CA VAL 108 35.352 43.934 30.125 1.00 0.00 C ATOM 343 C VAL 108 36.670 44.267 29.431 1.00 0.00 C ATOM 344 O VAL 108 36.987 45.444 29.233 1.00 0.00 O ATOM 345 N GLN 109 37.425 43.237 29.045 1.00 0.00 N ATOM 346 CA GLN 109 38.711 43.441 28.389 1.00 0.00 C ATOM 347 C GLN 109 38.610 43.727 26.885 1.00 0.00 C ATOM 348 O GLN 109 39.614 43.751 26.178 1.00 0.00 O ATOM 349 N SER 110 37.392 43.953 26.399 1.00 0.00 N ATOM 350 CA SER 110 37.215 44.258 24.990 1.00 0.00 C ATOM 351 C SER 110 37.298 43.096 24.015 1.00 0.00 C ATOM 352 O SER 110 37.371 43.313 22.805 1.00 0.00 O ATOM 353 N CYS 111 37.293 41.866 24.523 1.00 0.00 N ATOM 354 CA CYS 111 37.345 40.686 23.662 1.00 0.00 C ATOM 355 C CYS 111 36.113 39.825 23.905 1.00 0.00 C ATOM 356 O CYS 111 35.518 39.889 24.986 1.00 0.00 O ATOM 357 N ARG 112 35.741 39.024 22.906 1.00 0.00 N ATOM 358 CA ARG 112 34.593 38.119 23.014 1.00 0.00 C ATOM 359 C ARG 112 35.022 36.766 23.575 1.00 0.00 C ATOM 360 O ARG 112 36.044 36.222 23.156 1.00 0.00 O ATOM 361 N ALA 113 34.223 36.233 24.494 1.00 0.00 N ATOM 362 CA ALA 113 34.479 34.934 25.128 1.00 0.00 C ATOM 363 C ALA 113 33.259 34.038 24.949 1.00 0.00 C ATOM 364 O ALA 113 32.138 34.540 24.803 1.00 0.00 O ATOM 365 N ILE 114 33.460 32.721 24.950 1.00 0.00 N ATOM 366 CA ILE 114 32.317 31.826 24.854 1.00 0.00 C ATOM 367 C ILE 114 31.809 31.627 26.280 1.00 0.00 C ATOM 368 O ILE 114 32.384 32.186 27.218 1.00 0.00 O ATOM 369 N TRP 115 30.756 30.835 26.456 1.00 0.00 N ATOM 370 CA TRP 115 30.183 30.630 27.788 1.00 0.00 C ATOM 371 C TRP 115 31.107 29.977 28.804 1.00 0.00 C ATOM 372 O TRP 115 30.914 30.147 30.009 1.00 0.00 O ATOM 373 N ASN 116 32.106 29.232 28.329 1.00 0.00 N ATOM 374 CA ASN 116 33.036 28.566 29.238 1.00 0.00 C ATOM 375 C ASN 116 34.172 29.492 29.651 1.00 0.00 C ATOM 376 O ASN 116 35.021 29.130 30.463 1.00 0.00 O ATOM 377 N ASP 117 34.192 30.692 29.086 1.00 0.00 N ATOM 378 CA ASP 117 35.238 31.634 29.437 1.00 0.00 C ATOM 379 C ASP 117 36.456 31.570 28.531 1.00 0.00 C ATOM 380 O ASP 117 37.501 32.111 28.862 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 336 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 97.13 38.9 162 92.0 176 ARMSMC SECONDARY STRUCTURE . . 106.47 27.0 74 88.1 84 ARMSMC SURFACE . . . . . . . . 91.74 39.8 98 92.5 106 ARMSMC BURIED . . . . . . . . 104.85 37.5 64 91.4 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 36 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 53 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 14.08 (Number of atoms: 84) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 14.08 84 94.4 89 CRMSCA CRN = ALL/NP . . . . . 0.1677 CRMSCA SECONDARY STRUCTURE . . 14.88 38 90.5 42 CRMSCA SURFACE . . . . . . . . 14.77 51 94.4 54 CRMSCA BURIED . . . . . . . . 12.96 33 94.3 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.95 336 76.5 439 CRMSMC SECONDARY STRUCTURE . . 14.77 152 73.4 207 CRMSMC SURFACE . . . . . . . . 14.61 204 76.1 268 CRMSMC BURIED . . . . . . . . 12.87 132 77.2 171 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 383 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 333 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 192 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 225 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 158 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.95 336 45.5 739 CRMSALL SECONDARY STRUCTURE . . 14.77 152 42.2 360 CRMSALL SURFACE . . . . . . . . 14.61 204 46.3 441 CRMSALL BURIED . . . . . . . . 12.87 132 44.3 298 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.934 1.000 0.500 84 94.4 89 ERRCA SECONDARY STRUCTURE . . 13.906 1.000 0.500 38 90.5 42 ERRCA SURFACE . . . . . . . . 13.796 1.000 0.500 51 94.4 54 ERRCA BURIED . . . . . . . . 11.603 1.000 0.500 33 94.3 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.795 1.000 0.500 336 76.5 439 ERRMC SECONDARY STRUCTURE . . 13.794 1.000 0.500 152 73.4 207 ERRMC SURFACE . . . . . . . . 13.639 1.000 0.500 204 76.1 268 ERRMC BURIED . . . . . . . . 11.489 1.000 0.500 132 77.2 171 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 383 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 333 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 192 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 225 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 158 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.795 1.000 0.500 336 45.5 739 ERRALL SECONDARY STRUCTURE . . 13.794 1.000 0.500 152 42.2 360 ERRALL SURFACE . . . . . . . . 13.639 1.000 0.500 204 46.3 441 ERRALL BURIED . . . . . . . . 11.489 1.000 0.500 132 44.3 298 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 3 31 84 89 DISTCA CA (P) 0.00 1.12 2.25 3.37 34.83 89 DISTCA CA (RMS) 0.00 1.27 2.04 2.49 7.46 DISTCA ALL (N) 0 2 8 18 130 336 739 DISTALL ALL (P) 0.00 0.27 1.08 2.44 17.59 739 DISTALL ALL (RMS) 0.00 1.65 2.50 3.32 7.43 DISTALL END of the results output