####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 247), selected 31 , name T0606TS436_1-D1 # Molecule2: number of CA atoms 120 ( 933), selected 31 , name T0606-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0606TS436_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 49 - 79 4.86 4.86 LCS_AVERAGE: 25.83 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 54 - 60 1.78 10.34 LONGEST_CONTINUOUS_SEGMENT: 7 62 - 68 1.69 26.62 LONGEST_CONTINUOUS_SEGMENT: 7 68 - 74 1.69 10.63 LCS_AVERAGE: 4.95 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 70 - 74 0.50 10.24 LCS_AVERAGE: 3.01 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 49 L 49 3 4 31 0 3 3 4 5 8 12 15 17 22 25 27 28 28 29 29 30 31 31 31 LCS_GDT E 50 E 50 3 4 31 0 3 3 4 4 6 6 7 17 22 25 27 28 28 29 29 30 31 31 31 LCS_GDT G 51 G 51 3 4 31 1 3 3 4 4 6 9 15 17 22 25 27 28 28 29 29 30 31 31 31 LCS_GDT S 52 S 52 3 4 31 0 3 3 4 5 10 12 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT Y 53 Y 53 3 4 31 1 4 6 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT I 54 I 54 3 7 31 1 4 4 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT F 55 F 55 3 7 31 0 3 5 6 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT C 56 C 56 3 7 31 0 3 5 6 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT M 57 M 57 3 7 31 3 3 5 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT N 58 N 58 3 7 31 3 3 7 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT P 59 P 59 3 7 31 3 3 7 8 9 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT L 60 L 60 4 7 31 3 3 7 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT L 61 L 61 4 5 31 3 4 6 8 10 16 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT D 62 D 62 4 7 31 3 4 4 6 7 9 14 16 19 23 24 26 28 28 29 29 30 31 31 31 LCS_GDT K 63 K 63 4 7 31 2 4 5 6 7 7 10 11 12 13 19 22 23 27 27 28 29 31 31 31 LCS_GDT L 64 L 64 4 7 31 2 4 5 6 7 7 8 8 9 11 19 22 24 27 27 29 30 31 31 31 LCS_GDT S 65 S 65 4 7 31 3 4 5 6 7 10 14 18 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT D 66 D 66 4 7 31 3 4 6 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT E 67 E 67 4 7 31 3 4 6 8 11 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT D 68 D 68 3 7 31 3 4 6 8 11 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT I 69 I 69 4 7 31 3 4 4 7 7 11 13 16 19 23 24 27 28 28 29 29 30 31 31 31 LCS_GDT R 70 R 70 5 7 31 3 5 5 7 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT E 71 E 71 5 7 31 4 5 7 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT Q 72 Q 72 5 7 31 4 5 6 8 10 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT L 73 L 73 5 7 31 4 5 6 8 10 16 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT K 74 K 74 5 7 31 4 5 5 7 8 10 13 15 20 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT A 75 A 75 3 4 31 3 4 4 4 7 10 12 15 20 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT F 76 F 76 3 4 31 3 4 7 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT V 77 V 77 3 4 31 3 3 7 8 11 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT T 78 T 78 3 4 31 3 3 7 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 LCS_GDT G 79 G 79 3 3 31 0 3 3 3 3 5 6 8 9 18 23 24 25 28 29 29 30 31 31 31 LCS_AVERAGE LCS_A: 11.26 ( 3.01 4.95 25.83 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 8 12 17 18 19 21 23 25 27 28 28 29 29 30 31 31 31 GDT PERCENT_AT 3.33 4.17 5.83 6.67 10.00 14.17 15.00 15.83 17.50 19.17 20.83 22.50 23.33 23.33 24.17 24.17 25.00 25.83 25.83 25.83 GDT RMS_LOCAL 0.34 0.50 1.18 1.25 2.11 2.41 2.47 2.59 2.95 3.18 3.50 3.80 4.01 3.97 4.18 4.18 4.50 4.86 4.86 4.86 GDT RMS_ALL_AT 10.94 10.24 6.65 6.59 5.57 5.60 5.58 5.41 5.23 5.27 5.21 5.14 4.98 5.17 4.99 4.99 4.91 4.86 4.86 4.86 # Checking swapping # possible swapping detected: D 62 D 62 # possible swapping detected: D 66 D 66 # possible swapping detected: E 67 E 67 # possible swapping detected: D 68 D 68 # possible swapping detected: F 76 F 76 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 49 L 49 8.807 0 0.518 1.153 11.078 2.024 3.810 LGA E 50 E 50 6.768 0 0.431 0.916 9.153 13.452 10.317 LGA G 51 G 51 7.296 0 0.435 0.435 8.243 8.690 8.690 LGA S 52 S 52 5.985 0 0.511 0.870 8.752 23.929 19.286 LGA Y 53 Y 53 2.237 0 0.522 1.401 7.671 61.667 44.325 LGA I 54 I 54 1.595 0 0.648 1.347 8.414 67.619 46.905 LGA F 55 F 55 2.699 0 0.159 0.361 7.063 59.286 37.922 LGA C 56 C 56 2.691 0 0.237 0.320 3.447 67.143 62.619 LGA M 57 M 57 2.542 0 0.319 1.019 6.329 71.310 51.071 LGA N 58 N 58 2.724 0 0.629 0.594 5.212 60.952 47.738 LGA P 59 P 59 3.487 0 0.615 0.560 6.958 51.786 38.980 LGA L 60 L 60 2.185 0 0.651 1.277 5.616 69.048 62.619 LGA L 61 L 61 3.866 0 0.558 1.236 8.000 35.952 23.631 LGA D 62 D 62 7.991 0 0.415 1.138 9.521 6.905 6.667 LGA K 63 K 63 13.400 0 0.675 0.724 24.112 0.000 0.000 LGA L 64 L 64 11.495 0 0.415 0.632 18.260 0.476 0.238 LGA S 65 S 65 5.466 0 0.585 0.768 7.109 30.714 36.032 LGA D 66 D 66 1.817 0 0.622 0.922 8.057 67.143 43.869 LGA E 67 E 67 2.310 0 0.136 0.751 5.010 64.762 49.153 LGA D 68 D 68 2.580 0 0.447 1.140 5.433 55.476 48.690 LGA I 69 I 69 5.885 0 0.602 1.078 11.288 31.786 16.607 LGA R 70 R 70 1.974 0 0.142 1.747 7.441 65.357 42.814 LGA E 71 E 71 2.299 0 0.477 0.912 6.878 61.429 42.540 LGA Q 72 Q 72 2.842 0 0.053 0.941 5.166 53.810 49.101 LGA L 73 L 73 2.982 0 0.486 1.004 5.396 55.357 53.333 LGA K 74 K 74 4.969 0 0.098 1.114 13.908 43.929 20.370 LGA A 75 A 75 5.364 0 0.184 0.191 6.320 30.476 27.810 LGA F 76 F 76 2.230 0 0.607 0.837 5.822 60.952 46.580 LGA V 77 V 77 3.121 0 0.664 1.381 5.250 61.429 50.340 LGA T 78 T 78 1.826 0 0.618 0.607 5.764 51.190 43.946 LGA G 79 G 79 8.588 0 0.301 0.301 12.026 5.000 5.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 247 247 100.00 120 SUMMARY(RMSD_GDC): 4.861 4.760 6.194 11.159 8.675 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 120 4.0 19 2.59 12.708 11.935 0.707 LGA_LOCAL RMSD: 2.589 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.409 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 4.861 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.811011 * X + 0.213050 * Y + -0.544858 * Z + 11.497914 Y_new = -0.301498 * X + -0.645924 * Y + -0.701343 * Z + 81.437187 Z_new = -0.501358 * X + 0.733070 * Y + -0.459617 * Z + -15.652719 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.355923 0.525168 2.130815 [DEG: -20.3929 30.0899 122.0867 ] ZXZ: -0.660483 2.048361 -0.599849 [DEG: -37.8429 117.3624 -34.3688 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0606TS436_1-D1 REMARK 2: T0606-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0606TS436_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 120 4.0 19 2.59 11.935 4.86 REMARK ---------------------------------------------------------- MOLECULE T0606TS436_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0606 REMARK MODEL 1 REFINED REMARK PARENT 3FAJ_A ATOM 642 CA LEU 49 -1.542 52.222 15.525 1.00 1.26 C ATOM 643 N LEU 49 -1.539 53.289 16.456 1.00 1.26 N ATOM 646 C LEU 49 -0.390 52.431 14.513 1.00 1.26 C ATOM 647 O LEU 49 0.615 51.704 14.672 1.00 1.26 O ATOM 648 CB LEU 49 -2.951 52.025 14.863 1.00 1.26 C ATOM 651 CG LEU 49 -3.244 50.537 14.443 1.00 1.26 C ATOM 652 CD1 LEU 49 -4.713 50.401 13.931 1.00 1.26 C ATOM 653 CD2 LEU 49 -2.250 50.009 13.358 1.00 1.26 C ATOM 661 N GLU 50 -0.427 53.408 13.646 1.00 0.38 N ATOM 662 CA GLU 50 0.714 53.732 12.856 1.00 0.50 C ATOM 663 C GLU 50 1.856 54.407 13.680 1.00 1.19 C ATOM 664 O GLU 50 2.375 55.459 13.258 1.00 2.82 O ATOM 665 CB GLU 50 0.284 54.657 11.676 1.00 0.24 C ATOM 666 CG GLU 50 -0.874 54.037 10.819 1.00 0.53 C ATOM 667 CD GLU 50 -1.380 54.982 9.709 1.00 0.72 C ATOM 674 OE1 GLU 50 -2.321 54.611 8.958 1.00 1.26 O ATOM 675 OE2 GLU 50 -0.868 56.121 9.550 1.00 1.26 O ATOM 676 CA GLY 51 3.435 54.124 15.451 1.00 1.26 C ATOM 677 N GLY 51 2.214 53.855 14.803 1.00 1.26 N ATOM 681 C GLY 51 4.006 52.730 15.758 1.00 1.26 C ATOM 682 O GLY 51 5.153 52.427 15.372 1.00 1.26 O ATOM 683 N SER 52 3.199 51.878 16.333 1.00 0.28 N ATOM 684 CA SER 52 3.508 50.503 16.382 1.00 0.11 C ATOM 685 C SER 52 3.815 50.059 14.944 1.00 0.39 C ATOM 686 O SER 52 4.995 49.762 14.667 1.00 0.87 O ATOM 687 CB SER 52 2.310 49.722 17.000 1.00 0.22 C ATOM 692 OG SER 52 2.637 48.255 17.081 1.00 1.26 O ATOM 694 CA TYR 53 3.096 49.827 12.704 1.00 1.26 C ATOM 695 N TYR 53 2.871 50.158 14.058 1.00 1.26 N ATOM 698 C TYR 53 3.925 50.930 11.959 1.00 1.26 C ATOM 699 O TYR 53 3.488 51.376 10.883 1.00 1.26 O ATOM 700 CB TYR 53 1.691 49.543 12.057 1.00 1.26 C ATOM 703 CG TYR 53 1.765 48.639 10.831 1.00 1.26 C ATOM 704 CD1 TYR 53 1.429 49.128 9.557 1.00 1.26 C ATOM 705 CD2 TYR 53 2.122 47.287 10.979 1.00 1.26 C ATOM 708 CE1 TYR 53 1.445 48.273 8.448 1.00 1.26 C ATOM 709 CE2 TYR 53 2.135 46.433 9.870 1.00 1.26 C ATOM 712 CZ TYR 53 1.792 46.925 8.603 1.00 1.26 C ATOM 713 OH TYR 53 1.787 46.125 7.571 1.00 1.26 H ATOM 715 N ILE 54 5.062 51.341 12.480 1.00 0.47 N ATOM 716 CA ILE 54 6.169 51.689 11.652 1.00 0.42 C ATOM 717 C ILE 54 7.390 50.845 12.055 1.00 0.58 C ATOM 718 O ILE 54 8.430 50.921 11.365 1.00 0.83 O ATOM 719 CB ILE 54 6.486 53.225 11.679 1.00 0.27 C ATOM 723 CG1 ILE 54 7.119 53.740 10.333 1.00 1.26 C ATOM 726 CG2 ILE 54 7.375 53.663 12.890 1.00 1.26 C ATOM 730 CD1 ILE 54 6.179 53.584 9.094 1.00 1.26 C ATOM 734 CA PHE 55 7.307 48.635 12.798 1.00 1.26 C ATOM 735 N PHE 55 7.245 50.018 13.054 1.00 1.26 N ATOM 738 C PHE 55 8.357 48.010 13.719 1.00 1.26 C ATOM 739 O PHE 55 9.280 48.699 14.218 1.00 1.26 O ATOM 740 CB PHE 55 7.497 48.184 11.291 1.00 1.26 C ATOM 743 CG PHE 55 7.179 46.715 11.046 1.00 1.26 C ATOM 744 CD1 PHE 55 5.867 46.239 11.218 1.00 1.26 C ATOM 745 CD2 PHE 55 8.182 45.830 10.614 1.00 1.26 C ATOM 746 CE1 PHE 55 5.567 44.893 10.977 1.00 1.26 C ATOM 747 CE2 PHE 55 7.881 44.483 10.376 1.00 1.26 C ATOM 748 CZ PHE 55 6.574 44.014 10.559 1.00 1.26 C ATOM 754 N CYS 56 8.200 46.747 13.926 1.00 1.63 N ATOM 755 CA CYS 56 9.243 45.923 14.366 1.00 1.78 C ATOM 756 C CYS 56 10.411 46.018 13.332 1.00 2.02 C ATOM 757 O CYS 56 10.537 45.124 12.469 1.00 1.36 O ATOM 758 CB CYS 56 8.553 44.530 14.448 1.00 2.84 C ATOM 763 SG CYS 56 9.711 43.202 14.951 1.00 1.26 S ATOM 765 N MET 57 11.179 47.079 13.383 1.00 2.25 N ATOM 766 CA MET 57 12.305 47.300 12.536 1.00 1.46 C ATOM 767 C MET 57 13.362 46.144 12.734 1.00 1.35 C ATOM 768 O MET 57 14.410 46.347 13.375 1.00 1.34 O ATOM 769 CB MET 57 12.780 48.796 12.780 1.00 1.23 C ATOM 774 CG MET 57 11.814 49.794 12.062 1.00 1.26 C ATOM 777 SD MET 57 12.058 51.504 12.672 1.00 1.26 S ATOM 778 CE MET 57 11.562 52.549 11.253 1.00 1.26 C ATOM 782 N ASN 58 13.064 44.996 12.165 1.00 1.34 N ATOM 783 CA ASN 58 13.633 43.715 12.440 1.00 1.60 C ATOM 784 C ASN 58 15.201 43.515 12.435 1.00 2.25 C ATOM 785 O ASN 58 15.684 42.805 13.320 1.00 2.92 O ATOM 786 CB ASN 58 12.861 42.703 11.516 1.00 1.93 C ATOM 787 CG ASN 58 13.485 41.295 11.504 1.00 2.86 C ATOM 792 OD1 ASN 58 13.545 40.648 12.523 1.00 1.26 O ATOM 793 ND2 ASN 58 13.981 40.771 10.323 1.00 1.26 N ATOM 796 N PRO 59 16.027 44.036 11.510 1.00 2.62 N ATOM 797 CA PRO 59 17.414 43.534 11.216 1.00 3.34 C ATOM 798 C PRO 59 18.585 43.511 12.273 1.00 3.35 C ATOM 799 O PRO 59 18.780 44.553 12.918 1.00 3.62 O ATOM 800 CB PRO 59 17.882 44.506 10.097 1.00 3.77 C ATOM 801 CG PRO 59 16.615 44.745 9.265 1.00 3.60 C ATOM 807 CD PRO 59 15.534 44.846 10.366 1.00 1.26 C ATOM 810 N LEU 60 19.400 42.452 12.369 1.00 2.10 N ATOM 811 CA LEU 60 20.681 42.515 13.039 1.00 2.17 C ATOM 812 C LEU 60 21.611 41.253 12.953 1.00 2.11 C ATOM 813 O LEU 60 21.173 40.209 12.434 1.00 2.45 O ATOM 814 CB LEU 60 20.490 42.733 14.585 1.00 1.89 C ATOM 815 CG LEU 60 21.438 43.809 15.221 1.00 1.51 C ATOM 820 CD1 LEU 60 21.034 45.257 14.793 1.00 1.26 C ATOM 821 CD2 LEU 60 21.381 43.675 16.772 1.00 1.26 C ATOM 829 N LEU 61 22.825 41.347 13.485 1.00 4.77 N ATOM 830 CA LEU 61 23.492 40.248 14.112 1.00 3.72 C ATOM 831 C LEU 61 23.652 40.624 15.631 1.00 4.21 C ATOM 832 O LEU 61 23.027 39.933 16.456 1.00 4.23 O ATOM 833 CB LEU 61 24.916 39.922 13.522 1.00 1.48 C ATOM 834 CG LEU 61 24.927 39.296 12.082 1.00 1.98 C ATOM 835 CD1 LEU 61 26.339 38.689 11.790 1.00 2.31 C ATOM 836 CD2 LEU 61 24.583 40.339 10.970 1.00 1.35 C ATOM 848 N ASP 62 24.429 41.634 15.994 1.00 6.54 N ATOM 849 CA ASP 62 24.596 42.057 17.358 1.00 4.99 C ATOM 850 C ASP 62 25.279 43.466 17.393 1.00 3.83 C ATOM 851 O ASP 62 24.785 44.346 16.662 1.00 3.84 O ATOM 852 CB ASP 62 25.340 40.986 18.239 1.00 3.30 C ATOM 853 CG ASP 62 26.746 40.668 17.683 1.00 1.92 C ATOM 858 OD1 ASP 62 26.876 40.198 16.522 1.00 1.26 O ATOM 859 OD2 ASP 62 27.766 40.868 18.393 1.00 1.26 O ATOM 860 N LYS 63 26.284 43.707 18.208 1.00 3.25 N ATOM 861 CA LYS 63 26.906 44.987 18.303 1.00 2.11 C ATOM 862 C LYS 63 27.882 45.181 17.103 1.00 1.13 C ATOM 863 O LYS 63 28.685 44.266 16.839 1.00 1.18 O ATOM 864 CB LYS 63 27.678 45.105 19.669 1.00 2.76 C ATOM 865 CG LYS 63 28.927 44.171 19.818 1.00 2.40 C ATOM 866 CD LYS 63 29.337 43.942 21.309 1.00 1.58 C ATOM 875 CE LYS 63 29.659 45.264 22.071 1.00 1.26 C ATOM 878 NZ LYS 63 30.139 44.939 23.488 1.00 1.26 N ATOM 882 CA LEU 64 28.715 46.676 15.394 1.00 1.26 C ATOM 883 N LEU 64 27.821 46.306 16.440 1.00 1.26 N ATOM 886 C LEU 64 28.646 45.775 14.125 1.00 1.26 C ATOM 887 O LEU 64 29.184 44.652 14.173 1.00 1.26 O ATOM 888 CB LEU 64 30.196 46.816 15.917 1.00 1.26 C ATOM 891 CG LEU 64 31.267 47.142 14.811 1.00 1.26 C ATOM 892 CD1 LEU 64 32.703 47.101 15.427 1.00 1.26 C ATOM 893 CD2 LEU 64 31.015 48.523 14.129 1.00 1.26 C ATOM 901 N SER 65 28.075 46.261 13.044 1.00 1.23 N ATOM 902 CA SER 65 28.368 45.801 11.727 1.00 1.34 C ATOM 903 C SER 65 27.599 46.739 10.743 1.00 1.59 C ATOM 904 O SER 65 27.819 47.966 10.850 1.00 1.28 O ATOM 905 CB SER 65 28.008 44.290 11.487 1.00 0.98 C ATOM 910 OG SER 65 28.417 43.858 10.102 1.00 1.26 O ATOM 912 N ASP 66 26.814 46.209 9.817 1.00 0.90 N ATOM 913 CA ASP 66 25.485 46.638 9.510 1.00 0.83 C ATOM 914 C ASP 66 25.024 48.127 9.404 1.00 1.01 C ATOM 915 O ASP 66 23.855 48.304 9.004 1.00 0.90 O ATOM 916 CB ASP 66 24.522 45.897 10.522 1.00 0.51 C ATOM 921 CG ASP 66 24.500 44.357 10.399 1.00 1.26 C ATOM 922 OD1 ASP 66 25.158 43.771 9.498 1.00 1.26 O ATOM 923 OD2 ASP 66 23.810 43.680 11.207 1.00 1.26 O ATOM 924 N GLU 67 25.784 49.134 9.744 1.00 1.18 N ATOM 925 CA GLU 67 25.182 50.323 10.208 1.00 0.89 C ATOM 926 C GLU 67 24.649 51.229 9.094 1.00 0.95 C ATOM 927 O GLU 67 23.418 51.393 9.056 1.00 0.74 O ATOM 928 CB GLU 67 26.173 51.140 11.102 1.00 0.94 C ATOM 933 CG GLU 67 26.252 50.547 12.541 1.00 1.26 C ATOM 936 CD GLU 67 27.277 51.296 13.411 1.00 1.26 C ATOM 937 OE1 GLU 67 27.134 52.527 13.633 1.00 1.26 O ATOM 938 OE2 GLU 67 28.252 50.677 13.910 1.00 1.26 O ATOM 939 CA ASP 68 25.269 53.054 7.601 1.00 1.26 C ATOM 940 N ASP 68 25.516 51.862 8.346 1.00 1.26 N ATOM 943 C ASP 68 23.816 53.638 7.484 1.00 1.26 C ATOM 944 O ASP 68 23.397 53.953 6.351 1.00 1.26 O ATOM 945 CB ASP 68 25.906 52.879 6.176 1.00 1.26 C ATOM 948 CG ASP 68 27.411 52.526 6.214 1.00 1.26 C ATOM 949 OD1 ASP 68 27.792 51.416 6.670 1.00 1.26 O ATOM 950 OD2 ASP 68 28.259 53.343 5.769 1.00 1.26 O ATOM 951 CA ILE 69 21.751 54.201 8.576 1.00 1.26 C ATOM 952 N ILE 69 23.104 53.794 8.582 1.00 1.26 N ATOM 955 C ILE 69 20.858 53.076 7.983 1.00 1.26 C ATOM 956 O ILE 69 21.223 52.492 6.941 1.00 1.26 O ATOM 957 CB ILE 69 21.486 55.638 7.979 1.00 1.26 C ATOM 959 CG1 ILE 69 22.524 56.664 8.568 1.00 1.26 C ATOM 962 CG2 ILE 69 20.020 56.090 8.303 1.00 1.26 C ATOM 966 CD1 ILE 69 22.361 58.113 8.022 1.00 1.26 C ATOM 970 CA ARG 70 18.740 52.002 7.950 1.00 1.26 C ATOM 971 N ARG 70 19.728 52.803 8.593 1.00 1.26 N ATOM 974 C ARG 70 18.639 52.348 6.447 1.00 1.26 C ATOM 975 O ARG 70 18.985 51.458 5.642 1.00 1.26 O ATOM 976 CB ARG 70 17.324 52.131 8.594 1.00 1.26 C ATOM 979 CG ARG 70 16.221 51.376 7.770 1.00 1.26 C ATOM 982 CD ARG 70 14.979 50.991 8.636 1.00 1.26 C ATOM 985 NE ARG 70 15.321 50.064 9.640 1.00 1.26 N ATOM 987 CZ ARG 70 15.840 48.802 9.356 1.00 1.26 C ATOM 988 NH1 ARG 70 16.507 48.171 10.287 1.00 1.26 H ATOM 989 NH2 ARG 70 15.680 48.243 8.178 1.00 1.26 H ATOM 994 CA GLU 71 18.283 54.009 4.761 1.00 1.26 C ATOM 995 N GLU 71 18.296 53.557 6.102 1.00 1.26 N ATOM 998 C GLU 71 19.685 54.034 4.066 1.00 1.26 C ATOM 999 O GLU 71 20.106 55.113 3.583 1.00 1.26 O ATOM 1000 CB GLU 71 17.670 55.453 4.745 1.00 1.26 C ATOM 1003 CG GLU 71 16.212 55.523 5.302 1.00 1.26 C ATOM 1006 CD GLU 71 15.660 56.966 5.313 1.00 1.26 C ATOM 1007 OE1 GLU 71 16.366 57.928 4.910 1.00 1.26 O ATOM 1008 OE2 GLU 71 14.493 57.183 5.730 1.00 1.26 O ATOM 1009 N GLN 72 20.350 52.907 3.947 1.00 1.01 N ATOM 1010 CA GLN 72 20.475 52.389 2.641 1.00 0.50 C ATOM 1011 C GLN 72 19.159 51.650 2.285 1.00 0.33 C ATOM 1012 O GLN 72 18.606 51.928 1.203 1.00 0.41 O ATOM 1013 CB GLN 72 21.718 51.453 2.516 1.00 0.15 C ATOM 1018 CG GLN 72 21.828 50.806 1.098 1.00 1.26 C ATOM 1021 CD GLN 72 23.131 49.997 0.953 1.00 1.26 C ATOM 1022 OE1 GLN 72 23.345 49.055 1.680 1.00 1.26 O ATOM 1023 NE2 GLN 72 24.058 50.341 -0.016 1.00 1.26 N ATOM 1026 CA LEU 73 17.522 50.003 2.869 1.00 1.26 C ATOM 1027 N LEU 73 18.674 50.786 3.132 1.00 1.26 N ATOM 1030 C LEU 73 16.210 50.856 2.895 1.00 1.26 C ATOM 1031 O LEU 73 15.325 50.543 3.714 1.00 1.26 O ATOM 1032 CB LEU 73 17.427 48.848 3.937 1.00 1.26 C ATOM 1035 CG LEU 73 18.471 47.683 3.790 1.00 1.26 C ATOM 1036 CD1 LEU 73 18.170 46.584 4.861 1.00 1.26 C ATOM 1037 CD2 LEU 73 19.951 48.159 3.930 1.00 1.26 C ATOM 1045 N LYS 74 16.072 51.807 2.005 1.00 0.61 N ATOM 1046 CA LYS 74 14.918 52.610 1.762 1.00 0.39 C ATOM 1047 C LYS 74 13.658 52.602 2.690 1.00 0.37 C ATOM 1048 O LYS 74 13.159 53.707 3.009 1.00 0.45 O ATOM 1049 CB LYS 74 14.348 52.334 0.322 1.00 0.35 C ATOM 1050 CG LYS 74 15.374 52.030 -0.826 1.00 0.29 C ATOM 1051 CD LYS 74 16.046 50.609 -0.821 1.00 1.26 C ATOM 1060 CE LYS 74 15.093 49.434 -0.441 1.00 1.26 C ATOM 1063 NZ LYS 74 15.834 48.101 -0.569 1.00 1.26 N ATOM 1067 CA ALA 75 11.713 51.304 3.214 1.00 1.26 C ATOM 1068 N ALA 75 13.101 51.455 2.996 1.00 1.26 N ATOM 1071 C ALA 75 10.916 51.802 1.985 1.00 1.26 C ATOM 1072 O ALA 75 10.379 50.960 1.243 1.00 1.26 O ATOM 1073 CB ALA 75 11.217 51.948 4.549 1.00 1.26 C ATOM 1077 CA PHE 76 10.053 53.692 0.787 1.00 1.26 C ATOM 1078 N PHE 76 10.862 53.088 1.782 1.00 1.26 N ATOM 1081 C PHE 76 8.556 53.444 1.111 1.00 1.26 C ATOM 1082 O PHE 76 8.126 52.275 1.071 1.00 1.26 O ATOM 1083 CB PHE 76 10.449 53.265 -0.675 1.00 1.26 C ATOM 1086 CG PHE 76 10.395 54.452 -1.631 1.00 1.26 C ATOM 1087 CD1 PHE 76 11.572 54.945 -2.224 1.00 1.26 C ATOM 1088 CD2 PHE 76 9.169 55.083 -1.908 1.00 1.26 C ATOM 1089 CE1 PHE 76 11.522 56.057 -3.074 1.00 1.26 C ATOM 1090 CE2 PHE 76 9.123 56.196 -2.758 1.00 1.26 C ATOM 1091 CZ PHE 76 10.300 56.684 -3.338 1.00 1.26 C ATOM 1097 CA VAL 77 6.732 54.484 2.334 1.00 1.26 C ATOM 1098 N VAL 77 7.829 54.491 1.426 1.00 1.26 N ATOM 1101 C VAL 77 7.231 55.391 3.485 1.00 1.26 C ATOM 1102 O VAL 77 8.266 55.065 4.102 1.00 1.26 O ATOM 1103 CB VAL 77 6.173 53.105 2.886 1.00 1.26 C ATOM 1105 CG1 VAL 77 5.259 52.407 1.820 1.00 1.26 C ATOM 1106 CG2 VAL 77 5.324 53.286 4.192 1.00 1.26 C ATOM 1113 CA THR 78 6.964 57.433 4.690 1.00 1.26 C ATOM 1114 N THR 78 6.552 56.479 3.728 1.00 1.26 N ATOM 1117 C THR 78 6.697 56.905 6.129 1.00 1.26 C ATOM 1118 O THR 78 7.247 55.841 6.471 1.00 1.26 O ATOM 1119 CB THR 78 6.233 58.789 4.384 1.00 1.26 C ATOM 1121 OG1 THR 78 4.738 58.604 4.443 1.00 1.26 O ATOM 1123 CG2 THR 78 6.618 59.355 2.983 1.00 1.26 C ATOM 1127 CA GLY 79 5.614 57.102 8.222 1.00 1.26 C ATOM 1128 N GLY 79 5.925 57.588 6.935 1.00 1.26 N ATOM 1132 C GLY 79 4.742 58.133 8.954 1.00 1.26 C ATOM 1133 O GLY 79 5.119 58.626 10.018 1.00 1.26 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 247 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 103.70 20.0 60 25.2 238 ARMSMC SECONDARY STRUCTURE . . 93.59 26.5 34 25.0 136 ARMSMC SURFACE . . . . . . . . 104.28 13.3 30 21.1 142 ARMSMC BURIED . . . . . . . . 103.12 26.7 30 31.2 96 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.60 32.1 28 26.7 105 ARMSSC1 RELIABLE SIDE CHAINS . 85.66 33.3 27 27.0 100 ARMSSC1 SECONDARY STRUCTURE . . 83.70 37.5 16 25.8 62 ARMSSC1 SURFACE . . . . . . . . 96.56 23.1 13 20.0 65 ARMSSC1 BURIED . . . . . . . . 76.92 40.0 15 37.5 40 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.53 52.2 23 30.3 76 ARMSSC2 RELIABLE SIDE CHAINS . 63.62 52.9 17 28.8 59 ARMSSC2 SECONDARY STRUCTURE . . 63.80 61.5 13 27.1 48 ARMSSC2 SURFACE . . . . . . . . 73.54 50.0 10 23.3 43 ARMSSC2 BURIED . . . . . . . . 60.60 53.8 13 39.4 33 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.88 37.5 8 33.3 24 ARMSSC3 RELIABLE SIDE CHAINS . 91.81 28.6 7 33.3 21 ARMSSC3 SECONDARY STRUCTURE . . 82.98 33.3 6 37.5 16 ARMSSC3 SURFACE . . . . . . . . 73.06 25.0 4 20.0 20 ARMSSC3 BURIED . . . . . . . . 97.02 50.0 4 100.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 14.36 100.0 3 33.3 9 ARMSSC4 RELIABLE SIDE CHAINS . 14.36 100.0 3 33.3 9 ARMSSC4 SECONDARY STRUCTURE . . 17.39 100.0 2 28.6 7 ARMSSC4 SURFACE . . . . . . . . 3.73 100.0 1 14.3 7 ARMSSC4 BURIED . . . . . . . . 17.39 100.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.86 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.86 31 25.8 120 CRMSCA CRN = ALL/NP . . . . . 0.1568 CRMSCA SECONDARY STRUCTURE . . 3.64 17 25.0 68 CRMSCA SURFACE . . . . . . . . 5.09 16 22.2 72 CRMSCA BURIED . . . . . . . . 4.60 15 31.2 48 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.98 153 25.7 595 CRMSMC SECONDARY STRUCTURE . . 3.64 85 25.1 339 CRMSMC SURFACE . . . . . . . . 5.34 78 21.9 356 CRMSMC BURIED . . . . . . . . 4.58 75 31.4 239 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.44 123 27.2 453 CRMSSC RELIABLE SIDE CHAINS . 7.42 107 26.6 403 CRMSSC SECONDARY STRUCTURE . . 6.38 77 26.6 290 CRMSSC SURFACE . . . . . . . . 7.48 52 19.7 264 CRMSSC BURIED . . . . . . . . 7.41 71 37.6 189 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.24 247 26.5 933 CRMSALL SECONDARY STRUCTURE . . 5.18 145 25.8 562 CRMSALL SURFACE . . . . . . . . 6.35 116 21.0 552 CRMSALL BURIED . . . . . . . . 6.15 131 34.4 381 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.066 0.510 0.266 31 25.8 120 ERRCA SECONDARY STRUCTURE . . 2.367 0.499 0.250 17 25.0 68 ERRCA SURFACE . . . . . . . . 3.206 0.511 0.277 16 22.2 72 ERRCA BURIED . . . . . . . . 2.918 0.510 0.255 15 31.2 48 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.071 0.495 0.255 153 25.7 595 ERRMC SECONDARY STRUCTURE . . 2.302 0.485 0.242 85 25.1 339 ERRMC SURFACE . . . . . . . . 3.327 0.497 0.263 78 21.9 356 ERRMC BURIED . . . . . . . . 2.805 0.493 0.247 75 31.4 239 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.287 0.623 0.312 123 27.2 453 ERRSC RELIABLE SIDE CHAINS . 5.283 0.625 0.313 107 26.6 403 ERRSC SECONDARY STRUCTURE . . 4.632 0.615 0.307 77 26.6 290 ERRSC SURFACE . . . . . . . . 5.145 0.613 0.307 52 19.7 264 ERRSC BURIED . . . . . . . . 5.391 0.630 0.315 71 37.6 189 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.086 0.551 0.280 247 26.5 933 ERRALL SECONDARY STRUCTURE . . 3.436 0.545 0.273 145 25.8 562 ERRALL SURFACE . . . . . . . . 4.096 0.542 0.281 116 21.0 552 ERRALL BURIED . . . . . . . . 4.077 0.558 0.279 131 34.4 381 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 4 9 19 30 31 120 DISTCA CA (P) 0.00 3.33 7.50 15.83 25.00 120 DISTCA CA (RMS) 0.00 1.73 2.16 3.16 4.55 DISTCA ALL (N) 0 15 55 131 229 247 933 DISTALL ALL (P) 0.00 1.61 5.89 14.04 24.54 933 DISTALL ALL (RMS) 0.00 1.70 2.37 3.48 5.22 DISTALL END of the results output