####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 84 ( 336), selected 84 , name T0606AL285_1-D1 # Molecule2: number of CA atoms 120 ( 933), selected 84 , name T0606-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0606AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 68 80 - 147 4.71 8.43 LCS_AVERAGE: 48.47 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 62 86 - 147 1.95 9.07 LCS_AVERAGE: 40.85 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 91 - 135 1.00 9.50 LONGEST_CONTINUOUS_SEGMENT: 45 92 - 136 0.99 9.55 LCS_AVERAGE: 25.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 84 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 64 L 64 3 4 16 3 3 3 5 5 6 8 12 13 16 16 17 18 20 20 22 24 27 29 31 LCS_GDT S 65 S 65 3 13 16 3 3 4 6 9 12 13 14 14 16 16 17 18 20 20 22 24 27 29 33 LCS_GDT D 66 D 66 12 13 16 12 12 12 12 12 12 13 14 14 16 16 17 18 20 20 21 23 25 28 31 LCS_GDT E 67 E 67 12 13 16 12 12 12 12 12 12 13 14 14 16 16 17 18 27 34 36 40 46 49 57 LCS_GDT D 68 D 68 12 13 16 12 12 12 12 12 12 13 14 14 17 19 32 38 56 63 66 66 69 71 72 LCS_GDT I 69 I 69 12 13 16 12 12 12 12 12 12 13 14 14 24 43 59 62 64 65 66 69 70 71 72 LCS_GDT R 70 R 70 12 13 16 12 12 12 12 12 12 13 14 14 17 23 33 39 47 52 58 65 70 71 72 LCS_GDT E 71 E 71 12 13 16 12 12 12 12 12 12 13 17 21 29 36 43 52 60 65 67 69 70 71 72 LCS_GDT Q 72 Q 72 12 13 16 12 12 12 12 12 12 13 14 14 62 63 64 65 66 66 67 69 70 71 72 LCS_GDT L 73 L 73 12 13 16 12 12 12 12 12 12 13 14 17 26 40 53 63 66 66 67 69 70 71 72 LCS_GDT K 74 K 74 12 13 16 12 12 12 12 12 12 13 14 14 19 20 22 32 32 34 50 52 58 68 70 LCS_GDT A 75 A 75 12 13 16 12 12 12 12 12 12 13 14 14 16 22 25 32 39 46 50 58 69 69 70 LCS_GDT F 76 F 76 12 13 16 12 12 12 12 12 12 13 15 16 21 23 26 27 28 50 51 54 58 58 69 LCS_GDT V 77 V 77 12 13 16 12 12 12 12 12 12 13 14 14 16 16 17 18 21 23 26 28 30 33 37 LCS_GDT T 78 T 78 3 13 16 3 3 3 3 9 10 12 14 14 16 16 17 20 21 23 26 28 30 43 44 LCS_GDT G 79 G 79 3 4 22 3 3 3 4 4 5 5 7 7 7 11 11 14 18 20 28 28 33 37 40 LCS_GDT K 80 K 80 3 7 68 3 3 4 5 7 8 9 10 10 11 13 18 24 27 30 35 39 42 49 55 LCS_GDT T 81 T 81 6 7 68 4 5 6 7 7 9 12 16 20 23 28 30 33 37 41 47 51 56 63 66 LCS_GDT D 82 D 82 6 7 68 4 5 6 7 11 19 23 27 31 40 44 47 55 60 63 67 68 70 71 72 LCS_GDT S 83 S 83 6 7 68 4 5 6 8 13 20 27 35 43 50 53 61 65 66 66 67 69 70 71 72 LCS_GDT I 84 I 84 6 7 68 4 5 7 15 26 38 47 53 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT R 85 R 85 6 49 68 4 5 6 9 18 29 42 50 58 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT T 86 T 86 6 62 68 5 10 16 28 47 54 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT D 87 D 87 3 62 68 3 3 37 45 53 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT T 88 T 88 8 62 68 5 10 17 30 47 56 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT E 89 E 89 8 62 68 4 10 17 30 47 56 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT L 90 L 90 8 62 68 4 6 17 30 47 56 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 91 S 91 45 62 68 5 26 39 48 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT F 92 F 92 45 62 68 17 36 46 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT D 93 D 93 45 62 68 18 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT I 94 I 94 45 62 68 13 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT Y 95 Y 95 45 62 68 13 31 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT V 96 V 96 45 62 68 7 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 97 S 97 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT E 98 E 98 45 62 68 8 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT T 99 T 99 45 62 68 6 17 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT D 100 D 100 45 62 68 13 34 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT Y 101 Y 101 45 62 68 19 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT A 102 A 102 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT L 103 L 103 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT I 104 I 104 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT R 105 R 105 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT Y 106 Y 106 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT A 107 A 107 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT D 108 D 108 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 109 S 109 45 62 68 20 36 46 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT L 110 L 110 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT C 111 C 111 45 62 68 19 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT E 112 E 112 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT R 113 R 113 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT L 114 L 114 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT N 115 N 115 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT D 116 D 116 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT A 117 A 117 45 62 68 13 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT G 118 G 118 45 62 68 18 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT A 119 A 119 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT D 120 D 120 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT V 121 V 121 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT Q 122 Q 122 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT I 123 I 123 45 62 68 19 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT K 124 K 124 45 62 68 13 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT Q 125 Q 125 45 62 68 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT Y 126 Y 126 45 62 68 10 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 127 S 127 45 62 68 12 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT G 128 G 128 45 62 68 10 34 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT T 129 T 129 45 62 68 10 29 44 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT M 130 M 130 45 62 68 10 32 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT L 131 L 131 45 62 68 18 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT R 132 R 132 45 62 68 18 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 133 S 133 45 62 68 10 34 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT R 134 R 134 45 62 68 10 26 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT A 135 A 135 45 62 68 10 25 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT V 136 V 136 45 62 68 7 24 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 137 S 137 30 62 68 6 25 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT G 138 G 138 30 62 68 7 25 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT K 139 K 139 30 62 68 9 25 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT Y 140 Y 140 30 62 68 9 31 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT E 141 E 141 30 62 68 9 31 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT A 142 A 142 30 62 68 9 31 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT F 143 F 143 30 62 68 8 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT L 144 L 144 27 62 68 6 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 145 S 145 8 62 68 5 17 33 44 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT E 146 E 146 8 62 68 5 7 26 38 49 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 LCS_GDT S 147 S 147 4 62 68 3 3 5 47 54 57 59 62 62 63 64 64 65 66 66 67 69 69 71 72 LCS_AVERAGE LCS_A: 38.20 ( 25.29 40.85 48.47 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 20 36 47 53 54 57 61 62 62 63 64 64 65 66 66 67 69 70 71 72 GDT PERCENT_AT 16.67 30.00 39.17 44.17 45.00 47.50 50.83 51.67 51.67 52.50 53.33 53.33 54.17 55.00 55.00 55.83 57.50 58.33 59.17 60.00 GDT RMS_LOCAL 0.33 0.60 0.97 1.08 1.15 1.38 1.92 1.95 1.95 2.17 2.40 2.32 2.53 2.82 2.76 3.01 3.56 4.08 4.12 4.33 GDT RMS_ALL_AT 9.63 9.50 9.54 9.56 9.53 9.37 9.03 9.07 9.07 8.97 8.89 8.89 8.83 8.74 8.76 8.68 8.51 8.32 8.37 8.32 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 64 L 64 21.772 4 0.486 0.486 23.440 0.000 0.000 LGA S 65 S 65 24.207 2 0.487 0.487 24.207 0.000 0.000 LGA D 66 D 66 20.837 4 0.617 0.617 22.110 0.000 0.000 LGA E 67 E 67 20.765 5 0.051 0.051 21.247 0.000 0.000 LGA D 68 D 68 14.458 4 0.044 0.044 17.032 0.000 0.000 LGA I 69 I 69 11.013 4 0.031 0.031 12.835 0.357 0.179 LGA R 70 R 70 14.559 7 0.025 0.025 14.559 0.000 0.000 LGA E 71 E 71 13.897 5 0.031 0.031 14.205 0.000 0.000 LGA Q 72 Q 72 7.302 5 0.039 0.039 9.370 4.762 2.116 LGA L 73 L 73 9.936 4 0.032 0.032 13.583 0.833 0.417 LGA K 74 K 74 16.512 5 0.020 0.020 18.290 0.000 0.000 LGA A 75 A 75 14.825 1 0.039 0.039 16.902 0.000 0.000 LGA F 76 F 76 14.166 7 0.179 0.179 17.869 0.000 0.000 LGA V 77 V 77 19.584 3 0.242 0.242 22.033 0.000 0.000 LGA T 78 T 78 19.760 3 0.486 0.486 19.948 0.000 0.000 LGA G 79 G 79 26.884 0 0.049 0.049 27.644 0.000 0.000 LGA K 80 K 80 26.063 5 0.250 0.250 26.063 0.000 0.000 LGA T 81 T 81 21.783 3 0.654 0.654 22.946 0.000 0.000 LGA D 82 D 82 15.002 4 0.156 0.156 17.521 0.000 0.000 LGA S 83 S 83 11.772 2 0.019 0.019 13.463 0.000 0.000 LGA I 84 I 84 8.084 4 0.123 0.123 8.700 6.190 3.095 LGA R 85 R 85 9.361 7 0.223 0.223 9.361 5.714 2.078 LGA T 86 T 86 4.897 3 0.088 0.088 6.686 28.333 16.190 LGA D 87 D 87 1.874 4 0.121 0.121 3.285 57.500 28.750 LGA T 88 T 88 4.792 3 0.196 0.196 5.132 32.976 18.844 LGA E 89 E 89 3.983 5 0.043 0.043 4.336 38.690 17.196 LGA L 90 L 90 4.286 4 0.143 0.143 4.286 45.357 22.679 LGA S 91 S 91 1.513 2 0.109 0.109 2.622 73.214 48.810 LGA F 92 F 92 0.781 7 0.037 0.037 0.781 90.476 32.900 LGA D 93 D 93 0.751 4 0.026 0.026 1.293 88.214 44.107 LGA I 94 I 94 1.031 4 0.090 0.090 1.052 85.952 42.976 LGA Y 95 Y 95 1.304 8 0.030 0.030 1.494 85.952 28.651 LGA V 96 V 96 0.752 3 0.090 0.090 0.867 95.238 54.422 LGA S 97 S 97 0.950 2 0.050 0.050 1.295 85.952 57.302 LGA E 98 E 98 1.482 5 0.673 0.673 2.780 73.214 32.540 LGA T 99 T 99 2.943 3 0.043 0.043 2.987 57.143 32.653 LGA D 100 D 100 2.042 4 0.000 0.000 2.181 73.095 36.548 LGA Y 101 Y 101 1.125 8 0.017 0.017 1.509 83.810 27.937 LGA A 102 A 102 0.920 1 0.036 0.036 1.005 88.214 70.571 LGA L 103 L 103 1.188 4 0.035 0.035 1.188 85.952 42.976 LGA I 104 I 104 0.720 4 0.033 0.033 0.866 90.476 45.238 LGA R 105 R 105 0.372 7 0.031 0.031 0.702 95.238 34.632 LGA Y 106 Y 106 1.052 8 0.024 0.024 1.079 85.952 28.651 LGA A 107 A 107 0.648 1 0.069 0.069 0.844 90.476 72.381 LGA D 108 D 108 0.545 4 0.045 0.045 0.968 90.476 45.238 LGA S 109 S 109 1.211 2 0.022 0.022 1.406 83.690 55.794 LGA L 110 L 110 1.174 4 0.042 0.042 1.181 81.429 40.714 LGA C 111 C 111 0.976 2 0.026 0.026 1.083 85.952 57.302 LGA E 112 E 112 1.133 5 0.033 0.033 1.188 81.429 36.190 LGA R 113 R 113 1.267 7 0.034 0.034 1.422 81.429 29.610 LGA L 114 L 114 0.989 4 0.020 0.020 1.008 88.214 44.107 LGA N 115 N 115 1.104 4 0.020 0.020 1.372 81.429 40.714 LGA D 116 D 116 1.561 4 0.078 0.078 1.852 75.000 37.500 LGA A 117 A 117 1.102 1 0.091 0.091 1.240 83.690 66.952 LGA G 118 G 118 0.996 0 0.098 0.098 1.210 83.690 83.690 LGA A 119 A 119 1.035 1 0.215 0.215 2.481 79.524 63.619 LGA D 120 D 120 0.990 4 0.037 0.037 1.224 85.952 42.976 LGA V 121 V 121 0.850 3 0.076 0.076 1.142 88.214 50.408 LGA Q 122 Q 122 0.692 5 0.076 0.076 0.708 95.238 42.328 LGA I 123 I 123 0.635 4 0.048 0.048 0.688 95.238 47.619 LGA K 124 K 124 0.627 5 0.109 0.109 1.408 88.214 39.206 LGA Q 125 Q 125 0.265 5 0.340 0.340 1.181 95.357 42.381 LGA Y 126 Y 126 1.384 8 0.071 0.071 1.467 81.429 27.143 LGA S 127 S 127 2.160 2 0.026 0.026 2.160 68.810 45.873 LGA G 128 G 128 2.321 0 0.058 0.058 2.332 64.762 64.762 LGA T 129 T 129 2.590 3 0.049 0.049 2.669 62.976 35.986 LGA M 130 M 130 1.963 4 0.029 0.029 2.103 75.119 37.560 LGA L 131 L 131 0.801 4 0.036 0.036 1.213 88.214 44.107 LGA R 132 R 132 0.922 7 0.032 0.032 1.010 88.214 32.078 LGA S 133 S 133 1.375 2 0.019 0.019 1.848 77.143 51.429 LGA R 134 R 134 1.981 7 0.079 0.079 2.336 70.833 25.758 LGA A 135 A 135 2.110 1 0.086 0.086 2.578 64.881 51.905 LGA V 136 V 136 2.568 3 0.066 0.066 2.965 59.048 33.741 LGA S 137 S 137 2.757 2 0.035 0.035 3.215 55.357 36.905 LGA G 138 G 138 3.078 0 0.041 0.041 3.206 51.786 51.786 LGA K 139 K 139 2.824 5 0.082 0.082 2.824 60.952 27.090 LGA Y 140 Y 140 2.130 8 0.048 0.048 2.418 64.762 21.587 LGA E 141 E 141 2.117 5 0.035 0.035 2.192 66.786 29.683 LGA A 142 A 142 1.977 1 0.079 0.079 2.003 70.833 56.667 LGA F 143 F 143 1.079 7 0.120 0.120 1.372 81.429 29.610 LGA L 144 L 144 0.970 4 0.032 0.032 1.669 83.810 41.905 LGA S 145 S 145 2.159 2 0.035 0.035 2.333 70.952 47.302 LGA E 146 E 146 2.947 5 0.601 0.601 3.896 55.595 24.709 LGA S 147 S 147 3.084 2 0.059 0.059 3.456 57.381 38.254 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 84 336 336 100.00 654 336 51.38 120 SUMMARY(RMSD_GDC): 8.030 7.957 7.957 39.288 21.392 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 84 120 4.0 62 1.95 45.417 45.692 3.030 LGA_LOCAL RMSD: 1.946 Number of atoms: 62 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.068 Number of assigned atoms: 84 Std_ASGN_ATOMS RMSD: 8.030 Standard rmsd on all 84 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.114292 * X + 0.760278 * Y + -0.639464 * Z + 69.204872 Y_new = 0.914989 * X + -0.331276 * Y + -0.230328 * Z + 14.842149 Z_new = -0.386952 * X + -0.558778 * Y + -0.733509 * Z + 183.992691 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.446530 0.397324 -2.490590 [DEG: 82.8801 22.7650 -142.7003 ] ZXZ: -1.225074 2.394266 -2.535921 [DEG: -70.1916 137.1814 -145.2975 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0606AL285_1-D1 REMARK 2: T0606-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0606AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 84 120 4.0 62 1.95 45.692 8.03 REMARK ---------------------------------------------------------- MOLECULE T0606AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1vr5A ATOM 1 N LEU 64 8.272 60.040 -0.914 1.00 0.00 N ATOM 2 CA LEU 64 8.274 59.022 -1.953 1.00 0.00 C ATOM 3 C LEU 64 9.048 59.540 -3.146 1.00 0.00 C ATOM 4 O LEU 64 8.670 60.537 -3.778 1.00 0.00 O ATOM 5 N SER 65 10.126 58.848 -3.485 1.00 0.00 N ATOM 6 CA SER 65 10.984 59.250 -4.600 1.00 0.00 C ATOM 7 C SER 65 11.841 58.058 -4.996 1.00 0.00 C ATOM 8 O SER 65 12.957 57.912 -4.512 1.00 0.00 O ATOM 9 N ASP 66 11.301 57.166 -5.805 1.00 0.00 N ATOM 10 CA ASP 66 12.051 55.954 -6.137 1.00 0.00 C ATOM 11 C ASP 66 13.393 56.207 -6.809 1.00 0.00 C ATOM 12 O ASP 66 14.324 55.419 -6.686 1.00 0.00 O ATOM 13 N GLU 67 13.511 57.283 -7.557 1.00 0.00 N ATOM 14 CA GLU 67 14.787 57.544 -8.180 1.00 0.00 C ATOM 15 C GLU 67 15.854 57.868 -7.146 1.00 0.00 C ATOM 16 O GLU 67 17.014 57.551 -7.350 1.00 0.00 O ATOM 17 N ASP 68 15.446 58.488 -6.037 1.00 0.00 N ATOM 18 CA ASP 68 16.355 58.794 -4.947 1.00 0.00 C ATOM 19 C ASP 68 16.772 57.501 -4.295 1.00 0.00 C ATOM 20 O ASP 68 17.943 57.332 -3.974 1.00 0.00 O ATOM 21 N ILE 69 15.805 56.607 -4.082 1.00 0.00 N ATOM 22 CA ILE 69 16.082 55.296 -3.521 1.00 0.00 C ATOM 23 C ILE 69 17.138 54.550 -4.366 1.00 0.00 C ATOM 24 O ILE 69 18.128 54.058 -3.848 1.00 0.00 O ATOM 25 N ARG 70 16.938 54.506 -5.673 1.00 0.00 N ATOM 26 CA ARG 70 17.897 53.837 -6.565 1.00 0.00 C ATOM 27 C ARG 70 19.282 54.463 -6.567 1.00 0.00 C ATOM 28 O ARG 70 20.307 53.782 -6.619 1.00 0.00 O ATOM 29 N GLU 71 19.322 55.783 -6.513 1.00 0.00 N ATOM 30 CA GLU 71 20.573 56.491 -6.426 1.00 0.00 C ATOM 31 C GLU 71 21.363 56.143 -5.172 1.00 0.00 C ATOM 32 O GLU 71 22.581 55.871 -5.250 1.00 0.00 O ATOM 33 N GLN 72 20.676 56.122 -4.030 1.00 0.00 N ATOM 34 CA GLN 72 21.284 55.719 -2.759 1.00 0.00 C ATOM 35 C GLN 72 21.830 54.256 -2.848 1.00 0.00 C ATOM 36 O GLN 72 22.976 53.987 -2.485 1.00 0.00 O ATOM 37 N LEU 73 21.020 53.342 -3.374 1.00 0.00 N ATOM 38 CA LEU 73 21.412 51.949 -3.488 1.00 0.00 C ATOM 39 C LEU 73 22.624 51.753 -4.367 1.00 0.00 C ATOM 40 O LEU 73 23.531 51.003 -3.991 1.00 0.00 O ATOM 41 N LYS 74 22.680 52.489 -5.473 1.00 0.00 N ATOM 42 CA LYS 74 23.831 52.468 -6.366 1.00 0.00 C ATOM 43 C LYS 74 25.089 52.962 -5.652 1.00 0.00 C ATOM 44 O LYS 74 26.138 52.318 -5.719 1.00 0.00 O ATOM 45 N ALA 75 24.987 54.083 -4.949 1.00 0.00 N ATOM 46 CA ALA 75 26.124 54.629 -4.187 1.00 0.00 C ATOM 47 C ALA 75 26.653 53.672 -3.112 1.00 0.00 C ATOM 48 O ALA 75 27.854 53.669 -2.851 1.00 0.00 O ATOM 49 N PHE 76 25.737 52.919 -2.515 1.00 0.00 N ATOM 50 CA PHE 76 26.030 51.921 -1.487 1.00 0.00 C ATOM 51 C PHE 76 26.623 50.638 -2.113 1.00 0.00 C ATOM 52 O PHE 76 27.101 49.783 -1.406 1.00 0.00 O ATOM 53 N VAL 77 26.571 50.530 -3.431 1.00 0.00 N ATOM 54 CA VAL 77 27.073 49.362 -4.121 1.00 0.00 C ATOM 55 C VAL 77 26.144 48.166 -4.260 1.00 0.00 C ATOM 56 O VAL 77 26.603 47.104 -4.672 1.00 0.00 O ATOM 57 N THR 78 24.856 48.348 -4.000 1.00 0.00 N ATOM 58 CA THR 78 23.851 47.300 -4.145 1.00 0.00 C ATOM 59 C THR 78 23.377 47.325 -5.572 1.00 0.00 C ATOM 60 O THR 78 22.540 48.161 -5.938 1.00 0.00 O ATOM 61 N GLY 79 23.913 39.632 -10.980 1.00 0.00 N ATOM 62 CA GLY 79 23.414 38.363 -11.492 1.00 0.00 C ATOM 63 C GLY 79 22.360 38.538 -12.593 1.00 0.00 C ATOM 64 O GLY 79 21.890 37.558 -13.147 1.00 0.00 O ATOM 65 N LYS 80 21.957 39.782 -12.865 1.00 0.00 N ATOM 66 CA LYS 80 20.941 40.115 -13.868 1.00 0.00 C ATOM 67 C LYS 80 19.539 39.468 -13.661 1.00 0.00 C ATOM 68 O LYS 80 18.827 39.197 -14.629 1.00 0.00 O ATOM 69 N THR 81 19.131 39.255 -12.410 1.00 0.00 N ATOM 70 CA THR 81 17.823 38.680 -12.096 1.00 0.00 C ATOM 71 C THR 81 16.750 39.683 -11.644 1.00 0.00 C ATOM 72 O THR 81 15.694 39.280 -11.118 1.00 0.00 O ATOM 73 N ASP 82 17.007 40.972 -11.828 1.00 0.00 N ATOM 74 CA ASP 82 16.091 42.013 -11.383 1.00 0.00 C ATOM 75 C ASP 82 16.207 42.429 -9.916 1.00 0.00 C ATOM 76 O ASP 82 15.563 43.399 -9.506 1.00 0.00 O ATOM 77 N SER 83 17.008 41.715 -9.122 1.00 0.00 N ATOM 78 CA SER 83 17.246 42.086 -7.728 1.00 0.00 C ATOM 79 C SER 83 18.692 42.479 -7.506 1.00 0.00 C ATOM 80 O SER 83 19.608 41.892 -8.071 1.00 0.00 O ATOM 81 N ILE 84 18.886 43.504 -6.700 1.00 0.00 N ATOM 82 CA ILE 84 20.218 43.959 -6.375 1.00 0.00 C ATOM 83 C ILE 84 20.792 42.954 -5.394 1.00 0.00 C ATOM 84 O ILE 84 20.113 42.490 -4.464 1.00 0.00 O ATOM 85 N ARG 85 22.045 42.590 -5.626 1.00 0.00 N ATOM 86 CA ARG 85 22.839 41.869 -4.651 1.00 0.00 C ATOM 87 C ARG 85 23.583 42.893 -3.787 1.00 0.00 C ATOM 88 O ARG 85 23.630 44.086 -4.120 1.00 0.00 O ATOM 89 N THR 86 24.199 42.416 -2.707 1.00 0.00 N ATOM 90 CA THR 86 25.049 43.255 -1.870 1.00 0.00 C ATOM 91 C THR 86 26.335 43.616 -2.624 1.00 0.00 C ATOM 92 O THR 86 26.594 43.089 -3.700 1.00 0.00 O ATOM 93 N ASP 87 27.128 44.566 -2.103 1.00 0.00 N ATOM 94 CA ASP 87 28.318 44.973 -2.813 1.00 0.00 C ATOM 95 C ASP 87 29.364 43.867 -3.008 1.00 0.00 C ATOM 96 O ASP 87 30.280 44.031 -3.796 1.00 0.00 O ATOM 97 N THR 88 26.623 39.071 -3.192 1.00 0.00 N ATOM 98 CA THR 88 25.829 38.050 -2.533 1.00 0.00 C ATOM 99 C THR 88 24.335 38.398 -2.546 1.00 0.00 C ATOM 100 O THR 88 23.919 39.456 -2.036 1.00 0.00 O ATOM 101 N GLU 89 23.506 37.496 -3.100 1.00 0.00 N ATOM 102 CA GLU 89 22.068 37.759 -3.103 1.00 0.00 C ATOM 103 C GLU 89 21.477 37.733 -1.716 1.00 0.00 C ATOM 104 O GLU 89 22.007 37.066 -0.844 1.00 0.00 O ATOM 105 N LEU 90 20.377 38.465 -1.519 1.00 0.00 N ATOM 106 CA LEU 90 19.660 38.444 -0.274 1.00 0.00 C ATOM 107 C LEU 90 18.181 38.717 -0.560 1.00 0.00 C ATOM 108 O LEU 90 17.824 39.316 -1.579 1.00 0.00 O ATOM 109 N SER 91 17.361 38.256 0.350 1.00 0.00 N ATOM 110 CA SER 91 15.946 38.605 0.372 1.00 0.00 C ATOM 111 C SER 91 15.505 38.890 1.800 1.00 0.00 C ATOM 112 O SER 91 16.106 38.429 2.757 1.00 0.00 O ATOM 113 N PHE 92 14.458 39.689 1.919 1.00 0.00 N ATOM 114 CA PHE 92 13.958 40.181 3.185 1.00 0.00 C ATOM 115 C PHE 92 12.491 39.812 3.284 1.00 0.00 C ATOM 116 O PHE 92 11.825 39.665 2.258 1.00 0.00 O ATOM 117 N ASP 93 12.008 39.635 4.505 1.00 0.00 N ATOM 118 CA ASP 93 10.592 39.502 4.722 1.00 0.00 C ATOM 119 C ASP 93 10.024 40.767 5.332 1.00 0.00 C ATOM 120 O ASP 93 10.719 41.505 6.068 1.00 0.00 O ATOM 121 N ILE 94 8.756 41.026 5.031 1.00 0.00 N ATOM 122 CA ILE 94 7.958 41.986 5.802 1.00 0.00 C ATOM 123 C ILE 94 6.729 41.240 6.314 1.00 0.00 C ATOM 124 O ILE 94 6.140 40.453 5.582 1.00 0.00 O ATOM 125 N TYR 95 6.332 41.464 7.556 1.00 0.00 N ATOM 126 CA TYR 95 5.284 40.648 8.161 1.00 0.00 C ATOM 127 C TYR 95 4.221 41.445 8.902 1.00 0.00 C ATOM 128 O TYR 95 4.470 42.539 9.430 1.00 0.00 O ATOM 129 N VAL 96 3.021 40.888 8.884 1.00 0.00 N ATOM 130 CA VAL 96 1.897 41.373 9.687 1.00 0.00 C ATOM 131 C VAL 96 1.072 40.140 10.082 1.00 0.00 C ATOM 132 O VAL 96 1.282 39.090 9.523 1.00 0.00 O ATOM 133 N SER 97 0.145 40.276 11.043 1.00 0.00 N ATOM 134 CA SER 97 -0.660 39.096 11.412 1.00 0.00 C ATOM 135 C SER 97 -1.630 38.598 10.341 1.00 0.00 C ATOM 136 O SER 97 -2.235 39.369 9.614 1.00 0.00 O ATOM 137 N GLU 98 -1.762 37.277 10.273 1.00 0.00 N ATOM 138 CA GLU 98 -2.700 36.617 9.375 1.00 0.00 C ATOM 139 C GLU 98 -4.124 37.069 9.665 1.00 0.00 C ATOM 140 O GLU 98 -4.517 37.111 10.819 1.00 0.00 O ATOM 141 N THR 99 -4.864 37.438 8.624 1.00 0.00 N ATOM 142 CA THR 99 -6.265 37.823 8.751 1.00 0.00 C ATOM 143 C THR 99 -6.504 39.284 9.069 1.00 0.00 C ATOM 144 O THR 99 -7.656 39.747 9.072 1.00 0.00 O ATOM 145 N ASP 100 -5.438 40.039 9.325 1.00 0.00 N ATOM 146 CA ASP 100 -5.572 41.488 9.508 1.00 0.00 C ATOM 147 C ASP 100 -5.492 42.108 8.109 1.00 0.00 C ATOM 148 O ASP 100 -4.445 42.519 7.652 1.00 0.00 O ATOM 149 N TYR 101 -6.612 42.103 7.403 1.00 0.00 N ATOM 150 CA TYR 101 -6.629 42.337 5.953 1.00 0.00 C ATOM 151 C TYR 101 -6.086 43.688 5.491 1.00 0.00 C ATOM 152 O TYR 101 -5.358 43.768 4.484 1.00 0.00 O ATOM 153 N ALA 102 -6.413 44.752 6.226 1.00 0.00 N ATOM 154 CA ALA 102 -5.901 46.082 5.867 1.00 0.00 C ATOM 155 C ALA 102 -4.349 46.135 5.959 1.00 0.00 C ATOM 156 O ALA 102 -3.702 46.757 5.120 1.00 0.00 O ATOM 157 N LEU 103 -3.781 45.482 6.975 1.00 0.00 N ATOM 158 CA LEU 103 -2.327 45.380 7.126 1.00 0.00 C ATOM 159 C LEU 103 -1.712 44.479 6.075 1.00 0.00 C ATOM 160 O LEU 103 -0.617 44.746 5.610 1.00 0.00 O ATOM 161 N ILE 104 -2.435 43.410 5.673 1.00 0.00 N ATOM 162 CA ILE 104 -1.966 42.558 4.601 1.00 0.00 C ATOM 163 C ILE 104 -1.868 43.287 3.293 1.00 0.00 C ATOM 164 O ILE 104 -0.846 43.173 2.616 1.00 0.00 O ATOM 165 N ARG 105 -2.901 44.059 2.928 1.00 0.00 N ATOM 166 CA ARG 105 -2.835 44.897 1.729 1.00 0.00 C ATOM 167 C ARG 105 -1.686 45.872 1.850 1.00 0.00 C ATOM 168 O ARG 105 -0.923 46.079 0.899 1.00 0.00 O ATOM 169 N TYR 106 -1.540 46.463 3.036 1.00 0.00 N ATOM 170 CA TYR 106 -0.512 47.483 3.232 1.00 0.00 C ATOM 171 C TYR 106 0.882 46.910 3.042 1.00 0.00 C ATOM 172 O TYR 106 1.710 47.519 2.316 1.00 0.00 O ATOM 173 N ALA 107 1.171 45.735 3.614 1.00 0.00 N ATOM 174 CA ALA 107 2.529 45.172 3.453 1.00 0.00 C ATOM 175 C ALA 107 2.781 44.619 2.039 1.00 0.00 C ATOM 176 O ALA 107 3.898 44.682 1.540 1.00 0.00 O ATOM 177 N ASP 108 1.718 44.190 1.354 1.00 0.00 N ATOM 178 CA ASP 108 1.811 43.809 -0.029 1.00 0.00 C ATOM 179 C ASP 108 2.216 45.029 -0.857 1.00 0.00 C ATOM 180 O ASP 108 3.056 44.933 -1.741 1.00 0.00 O ATOM 181 N SER 109 1.607 46.173 -0.564 1.00 0.00 N ATOM 182 CA SER 109 1.932 47.439 -1.241 1.00 0.00 C ATOM 183 C SER 109 3.391 47.879 -0.981 1.00 0.00 C ATOM 184 O SER 109 4.137 48.274 -1.901 1.00 0.00 O ATOM 185 N LEU 110 3.802 47.766 0.268 1.00 0.00 N ATOM 186 CA LEU 110 5.199 48.067 0.643 1.00 0.00 C ATOM 187 C LEU 110 6.195 47.151 -0.087 1.00 0.00 C ATOM 188 O LEU 110 7.163 47.638 -0.671 1.00 0.00 O ATOM 189 N CYS 111 5.920 45.855 -0.070 1.00 0.00 N ATOM 190 CA CYS 111 6.785 44.870 -0.732 1.00 0.00 C ATOM 191 C CYS 111 6.911 45.146 -2.215 1.00 0.00 C ATOM 192 O CYS 111 8.009 45.077 -2.754 1.00 0.00 O ATOM 193 N GLU 112 5.814 45.514 -2.869 1.00 0.00 N ATOM 194 CA GLU 112 5.853 45.929 -4.292 1.00 0.00 C ATOM 195 C GLU 112 6.755 47.120 -4.569 1.00 0.00 C ATOM 196 O GLU 112 7.476 47.130 -5.560 1.00 0.00 O ATOM 197 N ARG 113 6.649 48.160 -3.735 1.00 0.00 N ATOM 198 CA ARG 113 7.418 49.369 -3.928 1.00 0.00 C ATOM 199 C ARG 113 8.929 49.078 -3.787 1.00 0.00 C ATOM 200 O ARG 113 9.750 49.688 -4.498 1.00 0.00 O ATOM 201 N LEU 114 9.280 48.195 -2.856 1.00 0.00 N ATOM 202 CA LEU 114 10.681 47.807 -2.609 1.00 0.00 C ATOM 203 C LEU 114 11.207 46.946 -3.742 1.00 0.00 C ATOM 204 O LEU 114 12.321 47.150 -4.214 1.00 0.00 O ATOM 205 N ASN 115 10.406 45.982 -4.188 1.00 0.00 N ATOM 206 CA ASN 115 10.740 45.226 -5.388 1.00 0.00 C ATOM 207 C ASN 115 10.985 46.158 -6.594 1.00 0.00 C ATOM 208 O ASN 115 11.894 45.907 -7.422 1.00 0.00 O ATOM 209 N ASP 116 10.223 47.242 -6.686 1.00 0.00 N ATOM 210 CA ASP 116 10.408 48.174 -7.776 1.00 0.00 C ATOM 211 C ASP 116 11.732 48.908 -7.767 1.00 0.00 C ATOM 212 O ASP 116 12.096 49.428 -8.782 1.00 0.00 O ATOM 213 N ALA 117 12.452 48.961 -6.648 1.00 0.00 N ATOM 214 CA ALA 117 13.783 49.560 -6.646 1.00 0.00 C ATOM 215 C ALA 117 14.838 48.465 -6.498 1.00 0.00 C ATOM 216 O ALA 117 15.973 48.743 -6.143 1.00 0.00 O ATOM 217 N GLY 118 14.450 47.221 -6.785 1.00 0.00 N ATOM 218 CA GLY 118 15.374 46.097 -6.841 1.00 0.00 C ATOM 219 C GLY 118 15.720 45.412 -5.530 1.00 0.00 C ATOM 220 O GLY 118 16.751 44.766 -5.466 1.00 0.00 O ATOM 221 N ALA 119 14.900 45.559 -4.486 1.00 0.00 N ATOM 222 CA ALA 119 15.097 44.856 -3.226 1.00 0.00 C ATOM 223 C ALA 119 14.080 43.712 -3.114 1.00 0.00 C ATOM 224 O ALA 119 12.855 43.932 -3.151 1.00 0.00 O ATOM 225 N ASP 120 14.598 42.490 -2.953 1.00 0.00 N ATOM 226 CA ASP 120 13.798 41.284 -2.900 1.00 0.00 C ATOM 227 C ASP 120 13.129 41.135 -1.557 1.00 0.00 C ATOM 228 O ASP 120 13.710 40.666 -0.597 1.00 0.00 O ATOM 229 N VAL 121 11.892 41.611 -1.501 1.00 0.00 N ATOM 230 CA VAL 121 11.087 41.578 -0.297 1.00 0.00 C ATOM 231 C VAL 121 9.807 40.753 -0.507 1.00 0.00 C ATOM 232 O VAL 121 9.097 40.939 -1.484 1.00 0.00 O ATOM 233 N GLN 122 9.520 39.857 0.432 1.00 0.00 N ATOM 234 CA GLN 122 8.317 39.041 0.387 1.00 0.00 C ATOM 235 C GLN 122 7.465 39.231 1.631 1.00 0.00 C ATOM 236 O GLN 122 7.960 39.107 2.755 1.00 0.00 O ATOM 237 N ILE 123 6.171 39.494 1.433 1.00 0.00 N ATOM 238 CA ILE 123 5.225 39.607 2.529 1.00 0.00 C ATOM 239 C ILE 123 4.967 38.240 3.152 1.00 0.00 C ATOM 240 O ILE 123 4.922 37.232 2.433 1.00 0.00 O ATOM 241 N LYS 124 4.833 38.215 4.463 1.00 0.00 N ATOM 242 CA LYS 124 4.502 37.007 5.210 1.00 0.00 C ATOM 243 C LYS 124 3.413 37.344 6.172 1.00 0.00 C ATOM 244 O LYS 124 3.376 38.460 6.702 1.00 0.00 O ATOM 245 N GLN 125 2.552 36.371 6.445 1.00 0.00 N ATOM 246 CA GLN 125 1.371 36.602 7.271 1.00 0.00 C ATOM 247 C GLN 125 1.273 35.559 8.368 1.00 0.00 C ATOM 248 O GLN 125 0.370 34.729 8.342 1.00 0.00 O ATOM 249 N TYR 126 2.207 35.584 9.330 1.00 0.00 N ATOM 250 CA TYR 126 2.165 34.639 10.425 1.00 0.00 C ATOM 251 C TYR 126 0.897 34.753 11.273 1.00 0.00 C ATOM 252 O TYR 126 0.334 35.830 11.417 1.00 0.00 O ATOM 253 N SER 127 0.459 33.648 11.846 1.00 0.00 N ATOM 254 CA SER 127 -0.570 33.713 12.868 1.00 0.00 C ATOM 255 C SER 127 -0.118 34.668 13.969 1.00 0.00 C ATOM 256 O SER 127 1.071 34.799 14.242 1.00 0.00 O ATOM 257 N GLY 128 -1.081 35.309 14.611 1.00 0.00 N ATOM 258 CA GLY 128 -0.776 36.304 15.617 1.00 0.00 C ATOM 259 C GLY 128 0.294 35.890 16.653 1.00 0.00 C ATOM 260 O GLY 128 1.164 36.687 16.997 1.00 0.00 O ATOM 261 N THR 129 0.253 34.661 17.161 1.00 0.00 N ATOM 262 CA THR 129 1.184 34.318 18.224 1.00 0.00 C ATOM 263 C THR 129 2.623 34.300 17.726 1.00 0.00 C ATOM 264 O THR 129 3.527 34.620 18.483 1.00 0.00 O ATOM 265 N MET 130 2.817 33.899 16.479 1.00 0.00 N ATOM 266 CA MET 130 4.144 33.909 15.834 1.00 0.00 C ATOM 267 C MET 130 4.578 35.344 15.505 1.00 0.00 C ATOM 268 O MET 130 5.732 35.667 15.701 1.00 0.00 O ATOM 269 N LEU 131 3.662 36.157 14.974 1.00 0.00 N ATOM 270 CA LEU 131 3.920 37.611 14.795 1.00 0.00 C ATOM 271 C LEU 131 4.384 38.252 16.106 1.00 0.00 C ATOM 272 O LEU 131 5.383 38.960 16.137 1.00 0.00 O ATOM 273 N ARG 132 3.687 37.972 17.200 1.00 0.00 N ATOM 274 CA ARG 132 4.009 38.583 18.472 1.00 0.00 C ATOM 275 C ARG 132 5.349 38.084 18.982 1.00 0.00 C ATOM 276 O ARG 132 6.144 38.859 19.505 1.00 0.00 O ATOM 277 N SER 133 5.642 36.807 18.784 1.00 0.00 N ATOM 278 CA SER 133 6.952 36.321 19.176 1.00 0.00 C ATOM 279 C SER 133 8.049 37.002 18.323 1.00 0.00 C ATOM 280 O SER 133 9.128 37.351 18.853 1.00 0.00 O ATOM 281 N ARG 134 7.789 37.165 17.018 1.00 0.00 N ATOM 282 CA ARG 134 8.751 37.822 16.120 1.00 0.00 C ATOM 283 C ARG 134 8.952 39.266 16.576 1.00 0.00 C ATOM 284 O ARG 134 10.092 39.715 16.731 1.00 0.00 O ATOM 285 N ALA 135 7.848 39.961 16.831 1.00 0.00 N ATOM 286 CA ALA 135 7.892 41.387 17.201 1.00 0.00 C ATOM 287 C ALA 135 8.644 41.612 18.511 1.00 0.00 C ATOM 288 O ALA 135 9.631 42.342 18.564 1.00 0.00 O ATOM 289 N VAL 136 8.202 40.922 19.565 1.00 0.00 N ATOM 290 CA VAL 136 8.716 41.192 20.885 1.00 0.00 C ATOM 291 C VAL 136 10.112 40.575 21.048 1.00 0.00 C ATOM 292 O VAL 136 10.945 41.124 21.779 1.00 0.00 O ATOM 293 N SER 137 10.353 39.464 20.371 1.00 0.00 N ATOM 294 CA SER 137 11.647 38.807 20.400 1.00 0.00 C ATOM 295 C SER 137 12.722 39.412 19.506 1.00 0.00 C ATOM 296 O SER 137 13.922 39.135 19.669 1.00 0.00 O ATOM 297 N GLY 138 12.297 40.254 18.573 1.00 0.00 N ATOM 298 CA GLY 138 13.170 40.887 17.590 1.00 0.00 C ATOM 299 C GLY 138 13.575 39.989 16.435 1.00 0.00 C ATOM 300 O GLY 138 14.530 40.286 15.740 1.00 0.00 O ATOM 301 N LYS 139 12.892 38.876 16.223 1.00 0.00 N ATOM 302 CA LYS 139 13.275 37.968 15.127 1.00 0.00 C ATOM 303 C LYS 139 12.431 38.242 13.878 1.00 0.00 C ATOM 304 O LYS 139 11.486 37.522 13.556 1.00 0.00 O ATOM 305 N TYR 140 12.776 39.318 13.197 1.00 0.00 N ATOM 306 CA TYR 140 12.118 39.723 11.951 1.00 0.00 C ATOM 307 C TYR 140 13.152 40.447 11.126 1.00 0.00 C ATOM 308 O TYR 140 14.268 40.693 11.638 1.00 0.00 O ATOM 309 N GLU 141 12.818 40.770 9.860 1.00 0.00 N ATOM 310 CA GLU 141 13.590 41.711 9.022 1.00 0.00 C ATOM 311 C GLU 141 12.873 43.080 9.078 1.00 0.00 C ATOM 312 O GLU 141 13.378 44.049 9.661 1.00 0.00 O ATOM 313 N ALA 142 11.683 43.117 8.485 1.00 0.00 N ATOM 314 CA ALA 142 10.772 44.278 8.516 1.00 0.00 C ATOM 315 C ALA 142 9.465 43.853 9.120 1.00 0.00 C ATOM 316 O ALA 142 8.961 42.757 8.839 1.00 0.00 O ATOM 317 N PHE 143 8.889 44.708 9.949 1.00 0.00 N ATOM 318 CA PHE 143 7.622 44.398 10.584 1.00 0.00 C ATOM 319 C PHE 143 6.738 45.621 10.742 1.00 0.00 C ATOM 320 O PHE 143 7.153 46.648 11.256 1.00 0.00 O ATOM 321 N LEU 144 5.486 45.449 10.358 1.00 0.00 N ATOM 322 CA LEU 144 4.492 46.499 10.488 1.00 0.00 C ATOM 323 C LEU 144 3.931 46.437 11.880 1.00 0.00 C ATOM 324 O LEU 144 3.521 45.383 12.328 1.00 0.00 O ATOM 325 N SER 145 3.924 47.566 12.566 1.00 0.00 N ATOM 326 CA SER 145 3.400 47.691 13.897 1.00 0.00 C ATOM 327 C SER 145 3.007 49.100 14.287 1.00 0.00 C ATOM 328 O SER 145 3.501 50.091 13.724 1.00 0.00 O ATOM 329 N GLU 146 2.096 49.208 15.256 1.00 0.00 N ATOM 330 CA GLU 146 1.605 50.505 15.751 1.00 0.00 C ATOM 331 C GLU 146 1.230 50.474 17.224 1.00 0.00 C ATOM 332 O GLU 146 0.486 51.339 17.727 1.00 0.00 O ATOM 333 N SER 147 1.758 49.498 17.938 1.00 0.00 N ATOM 334 CA SER 147 1.293 49.273 19.307 1.00 0.00 C ATOM 335 C SER 147 1.757 50.292 20.329 1.00 0.00 C ATOM 336 O SER 147 1.106 50.458 21.367 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 336 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 42.79 78.9 166 69.7 238 ARMSMC SECONDARY STRUCTURE . . 26.60 88.4 112 82.4 136 ARMSMC SURFACE . . . . . . . . 50.71 76.3 97 68.3 142 ARMSMC BURIED . . . . . . . . 28.09 82.6 69 71.9 96 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 105 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 100 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 62 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 65 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 59 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 48 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.03 (Number of atoms: 84) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.03 84 70.0 120 CRMSCA CRN = ALL/NP . . . . . 0.0956 CRMSCA SECONDARY STRUCTURE . . 6.36 56 82.4 68 CRMSCA SURFACE . . . . . . . . 8.76 49 68.1 72 CRMSCA BURIED . . . . . . . . 6.88 35 72.9 48 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.96 336 56.5 595 CRMSMC SECONDARY STRUCTURE . . 6.42 224 66.1 339 CRMSMC SURFACE . . . . . . . . 8.52 196 55.1 356 CRMSMC BURIED . . . . . . . . 7.10 140 58.6 239 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 453 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 403 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 290 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 264 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 189 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.96 336 36.0 933 CRMSALL SECONDARY STRUCTURE . . 6.42 224 39.9 562 CRMSALL SURFACE . . . . . . . . 8.52 196 35.5 552 CRMSALL BURIED . . . . . . . . 7.10 140 36.7 381 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.117 1.000 0.500 84 70.0 120 ERRCA SECONDARY STRUCTURE . . 5.188 1.000 0.500 56 82.4 68 ERRCA SURFACE . . . . . . . . 6.762 1.000 0.500 49 68.1 72 ERRCA BURIED . . . . . . . . 5.215 1.000 0.500 35 72.9 48 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.073 1.000 0.500 336 56.5 595 ERRMC SECONDARY STRUCTURE . . 5.219 1.000 0.500 224 66.1 339 ERRMC SURFACE . . . . . . . . 6.618 1.000 0.500 196 55.1 356 ERRMC BURIED . . . . . . . . 5.311 1.000 0.500 140 58.6 239 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 453 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 403 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 290 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 264 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 189 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.073 1.000 0.500 336 36.0 933 ERRALL SECONDARY STRUCTURE . . 5.219 1.000 0.500 224 39.9 562 ERRALL SURFACE . . . . . . . . 6.618 1.000 0.500 196 35.5 552 ERRALL BURIED . . . . . . . . 5.311 1.000 0.500 140 36.7 381 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 13 25 50 70 84 120 DISTCA CA (P) 0.00 10.83 20.83 41.67 58.33 120 DISTCA CA (RMS) 0.00 1.57 2.07 3.21 4.55 DISTCA ALL (N) 1 55 103 193 283 336 933 DISTALL ALL (P) 0.11 5.89 11.04 20.69 30.33 933 DISTALL ALL (RMS) 0.99 1.61 2.07 3.14 4.59 DISTALL END of the results output