####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 49 ( 244), selected 49 , name T0605TS477_1-D1 # Molecule2: number of CA atoms 49 ( 417), selected 49 , name T0605-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0605TS477_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 49 18 - 66 2.95 2.95 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 22 - 59 1.98 3.30 LONGEST_CONTINUOUS_SEGMENT: 38 26 - 63 2.00 3.31 LONGEST_CONTINUOUS_SEGMENT: 38 29 - 66 1.98 3.38 LCS_AVERAGE: 75.72 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 21 - 46 0.98 5.38 LONGEST_CONTINUOUS_SEGMENT: 26 22 - 47 0.90 5.21 LCS_AVERAGE: 47.27 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 18 R 18 4 4 49 0 4 4 4 4 5 5 8 10 11 13 17 38 38 39 49 49 49 49 49 LCS_GDT G 19 G 19 4 32 49 3 4 4 19 20 25 32 36 37 39 43 48 48 48 48 49 49 49 49 49 LCS_GDT S 20 S 20 24 36 49 7 12 20 26 30 35 39 43 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 21 L 21 26 36 49 8 17 23 28 30 34 38 41 43 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT R 22 R 22 26 38 49 10 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT D 23 D 23 26 38 49 9 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 24 L 24 26 38 49 9 21 27 28 33 38 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Q 25 Q 25 26 38 49 11 21 27 28 33 37 42 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Y 26 Y 26 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT A 27 A 27 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 28 L 28 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Q 29 Q 29 26 38 49 11 21 27 30 33 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 30 E 30 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT K 31 K 31 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT I 32 I 32 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 33 E 33 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 34 E 34 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 35 L 35 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT R 36 R 36 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Q 37 Q 37 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT R 38 R 38 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT D 39 D 39 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT A 40 A 40 26 38 49 8 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 41 L 41 26 38 49 8 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT I 42 I 42 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT D 43 D 43 26 38 49 8 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 44 E 44 26 38 49 8 20 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 45 L 45 26 38 49 8 20 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 46 E 46 26 38 49 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 47 L 47 26 38 49 11 20 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 48 E 48 23 38 49 9 17 24 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 49 L 49 21 38 49 9 17 24 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT D 50 D 50 21 38 49 11 20 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Q 51 Q 51 21 38 49 11 17 24 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT K 52 K 52 21 38 49 11 17 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT D 53 D 53 21 38 49 11 17 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 54 E 54 21 38 49 11 19 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 55 L 55 21 38 49 10 17 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT I 56 I 56 21 38 49 8 17 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Q 57 Q 57 21 38 49 8 17 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT M 58 M 58 21 38 49 11 17 24 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 59 L 59 21 38 49 10 16 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Q 60 Q 60 21 38 49 10 16 23 29 34 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT N 61 N 61 21 38 49 10 16 23 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT E 62 E 62 21 38 49 11 17 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT L 63 L 63 21 38 49 10 17 24 29 34 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT D 64 D 64 21 38 49 10 16 23 29 33 36 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT K 65 K 65 21 38 49 6 17 23 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_GDT Y 66 Y 66 21 38 49 11 17 24 29 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 LCS_AVERAGE LCS_A: 74.33 ( 47.27 75.72 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 21 27 30 35 40 43 45 46 47 47 48 48 48 48 49 49 49 49 49 GDT PERCENT_AT 22.45 42.86 55.10 61.22 71.43 81.63 87.76 91.84 93.88 95.92 95.92 97.96 97.96 97.96 97.96 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.24 0.64 0.91 1.25 1.66 1.88 2.05 2.21 2.34 2.43 2.43 2.65 2.65 2.65 2.65 2.95 2.95 2.95 2.95 2.95 GDT RMS_ALL_AT 4.65 6.07 4.82 4.02 3.23 3.23 3.22 3.14 3.05 3.03 3.03 2.97 2.97 2.97 2.97 2.95 2.95 2.95 2.95 2.95 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 18 R 18 10.882 6 0.180 0.188 12.332 4.524 1.645 LGA G 19 G 19 8.651 0 0.179 0.179 8.651 4.881 4.881 LGA S 20 S 20 6.063 1 0.644 0.579 6.405 19.286 16.429 LGA L 21 L 21 5.738 3 0.103 0.100 7.135 33.571 18.036 LGA R 22 R 22 1.791 6 0.053 0.050 2.622 77.738 34.892 LGA D 23 D 23 2.041 3 0.049 0.049 3.781 70.952 40.893 LGA L 24 L 24 4.015 3 0.035 0.052 5.665 43.452 24.405 LGA Q 25 Q 25 4.141 4 0.092 0.097 5.032 43.452 22.222 LGA Y 26 Y 26 2.089 7 0.026 0.024 2.514 73.095 29.127 LGA A 27 A 27 1.190 0 0.021 0.034 2.477 86.071 81.810 LGA L 28 L 28 2.710 3 0.040 0.039 4.167 64.881 37.083 LGA Q 29 Q 29 3.233 4 0.054 0.059 4.451 55.357 28.730 LGA E 30 E 30 2.340 4 0.039 0.044 3.021 70.833 37.037 LGA K 31 K 31 1.152 4 0.031 0.049 2.294 88.214 46.402 LGA I 32 I 32 2.143 3 0.040 0.045 3.423 72.976 42.738 LGA E 33 E 33 3.099 4 0.045 0.045 4.264 57.262 29.577 LGA E 34 E 34 2.639 4 0.066 0.067 3.371 64.881 34.392 LGA L 35 L 35 1.130 3 0.066 0.064 2.264 92.976 54.583 LGA R 36 R 36 2.114 6 0.023 0.035 3.386 68.929 29.610 LGA Q 37 Q 37 3.293 4 0.045 0.052 4.381 53.571 27.937 LGA R 38 R 38 2.575 6 0.054 0.053 3.043 66.905 28.874 LGA D 39 D 39 0.408 3 0.045 0.046 1.196 97.619 58.988 LGA A 40 A 40 1.798 0 0.045 0.045 2.842 75.000 71.429 LGA L 41 L 41 2.757 3 0.025 0.033 3.412 60.952 36.726 LGA I 42 I 42 2.129 3 0.016 0.044 2.202 68.810 42.500 LGA D 43 D 43 0.562 3 0.056 0.054 0.989 90.476 57.738 LGA E 44 E 44 1.720 4 0.031 0.046 2.385 72.976 39.630 LGA L 45 L 45 2.742 3 0.092 0.091 3.441 62.857 37.679 LGA E 46 E 46 2.055 4 0.087 0.082 2.222 70.952 38.730 LGA L 47 L 47 1.271 3 0.038 0.042 1.468 81.429 50.893 LGA E 48 E 48 1.302 4 0.085 0.081 1.483 81.429 45.238 LGA L 49 L 49 0.901 3 0.030 0.030 1.132 88.214 54.286 LGA D 50 D 50 1.253 3 0.058 0.057 1.703 81.429 49.821 LGA Q 51 Q 51 1.911 4 0.071 0.070 2.126 72.857 39.577 LGA K 52 K 52 1.560 4 0.025 0.044 1.582 77.143 42.381 LGA D 53 D 53 0.118 3 0.070 0.068 0.600 97.619 60.119 LGA E 54 E 54 1.488 4 0.039 0.042 2.352 81.429 43.386 LGA L 55 L 55 2.264 3 0.020 0.022 3.081 70.833 41.667 LGA I 56 I 56 2.028 3 0.040 0.046 2.306 68.810 42.500 LGA Q 57 Q 57 1.262 4 0.029 0.047 1.677 85.952 46.296 LGA M 58 M 58 0.883 3 0.054 0.053 1.770 92.857 55.536 LGA L 59 L 59 2.398 3 0.028 0.032 3.430 64.881 38.690 LGA Q 60 Q 60 3.226 4 0.055 0.069 3.977 55.476 29.471 LGA N 61 N 61 2.017 3 0.034 0.033 2.154 70.952 43.571 LGA E 62 E 62 0.815 4 0.034 0.040 1.829 88.333 47.354 LGA L 63 L 63 3.054 3 0.036 0.039 4.148 55.476 32.381 LGA D 64 D 64 3.542 3 0.051 0.049 4.198 51.905 30.595 LGA K 65 K 65 1.682 4 0.044 0.051 1.890 79.405 43.386 LGA Y 66 Y 66 1.294 7 0.038 0.038 2.364 79.405 31.865 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 417 244 58.51 49 SUMMARY(RMSD_GDC): 2.948 2.688 2.863 68.149 39.260 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 49 49 4.0 45 2.21 73.980 78.346 1.952 LGA_LOCAL RMSD: 2.205 Number of atoms: 45 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.136 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 2.948 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.145000 * X + 0.934461 * Y + -0.325204 * Z + -36.691040 Y_new = -0.430065 * X + -0.355530 * Y + -0.829845 * Z + 98.416222 Z_new = -0.891078 * X + 0.019531 * Y + 0.453431 * Z + 62.061260 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.895986 1.099714 0.043047 [DEG: -108.6320 63.0090 2.4664 ] ZXZ: -0.373492 1.100186 -1.548881 [DEG: -21.3995 63.0360 -88.7444 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0605TS477_1-D1 REMARK 2: T0605-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0605TS477_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 49 49 4.0 45 2.21 78.346 2.95 REMARK ---------------------------------------------------------- MOLECULE T0605TS477_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0605 REMARK MODEL 1 REMARK PARENT N/A ATOM 83 N ARG 18 -11.838 64.922 17.994 1.00 0.00 N ATOM 84 CA ARG 18 -10.990 63.922 17.415 1.00 0.00 C ATOM 85 CB ARG 18 -11.569 63.287 16.135 1.00 0.00 C ATOM 86 C ARG 18 -9.743 64.640 17.049 1.00 0.00 C ATOM 87 O ARG 18 -8.700 64.027 16.822 1.00 0.00 O ATOM 88 N GLY 19 -9.822 65.981 17.011 1.00 0.00 N ATOM 89 CA GLY 19 -8.631 66.729 16.768 1.00 0.00 C ATOM 90 C GLY 19 -8.096 66.417 15.421 1.00 0.00 C ATOM 91 O GLY 19 -8.671 66.844 14.423 1.00 0.00 O ATOM 92 N SER 20 -6.963 65.699 15.341 1.00 0.00 N ATOM 93 CA SER 20 -6.506 65.376 14.028 1.00 0.00 C ATOM 94 CB SER 20 -5.053 64.875 14.015 1.00 0.00 C ATOM 95 C SER 20 -7.376 64.272 13.507 1.00 0.00 C ATOM 96 O SER 20 -7.616 63.273 14.184 1.00 0.00 O ATOM 97 N LEU 21 -7.875 64.437 12.271 1.00 0.00 N ATOM 98 CA LEU 21 -8.715 63.442 11.676 1.00 0.00 C ATOM 99 CB LEU 21 -9.249 63.864 10.297 1.00 0.00 C ATOM 100 C LEU 21 -7.964 62.162 11.482 1.00 0.00 C ATOM 101 O LEU 21 -8.469 61.077 11.769 1.00 0.00 O ATOM 102 N ARG 22 -6.709 62.278 11.008 1.00 0.00 N ATOM 103 CA ARG 22 -5.950 61.143 10.572 1.00 0.00 C ATOM 104 CB ARG 22 -4.594 61.546 9.973 1.00 0.00 C ATOM 105 C ARG 22 -5.680 60.174 11.678 1.00 0.00 C ATOM 106 O ARG 22 -5.878 58.972 11.512 1.00 0.00 O ATOM 107 N ASP 23 -5.233 60.660 12.849 1.00 0.00 N ATOM 108 CA ASP 23 -4.871 59.724 13.872 1.00 0.00 C ATOM 109 CB ASP 23 -4.247 60.370 15.120 1.00 0.00 C ATOM 110 C ASP 23 -6.064 58.944 14.310 1.00 0.00 C ATOM 111 O ASP 23 -5.985 57.727 14.476 1.00 0.00 O ATOM 112 N LEU 24 -7.210 59.618 14.502 1.00 0.00 N ATOM 113 CA LEU 24 -8.359 58.912 14.987 1.00 0.00 C ATOM 114 CB LEU 24 -9.575 59.810 15.256 1.00 0.00 C ATOM 115 C LEU 24 -8.780 57.910 13.968 1.00 0.00 C ATOM 116 O LEU 24 -9.150 56.785 14.302 1.00 0.00 O ATOM 117 N GLN 25 -8.713 58.291 12.682 1.00 0.00 N ATOM 118 CA GLN 25 -9.205 57.429 11.652 1.00 0.00 C ATOM 119 CB GLN 25 -8.961 58.041 10.265 1.00 0.00 C ATOM 120 C GLN 25 -8.469 56.129 11.688 1.00 0.00 C ATOM 121 O GLN 25 -9.082 55.064 11.732 1.00 0.00 O ATOM 122 N TYR 26 -7.128 56.183 11.686 1.00 0.00 N ATOM 123 CA TYR 26 -6.343 54.984 11.654 1.00 0.00 C ATOM 124 CB TYR 26 -4.866 55.270 11.332 1.00 0.00 C ATOM 125 C TYR 26 -6.441 54.241 12.950 1.00 0.00 C ATOM 126 O TYR 26 -6.596 53.021 12.967 1.00 0.00 O ATOM 127 N ALA 27 -6.371 54.970 14.078 1.00 0.00 N ATOM 128 CA ALA 27 -6.345 54.352 15.373 1.00 0.00 C ATOM 129 CB ALA 27 -6.207 55.378 16.508 1.00 0.00 C ATOM 130 C ALA 27 -7.607 53.589 15.610 1.00 0.00 C ATOM 131 O ALA 27 -7.578 52.481 16.144 1.00 0.00 O ATOM 132 N LEU 28 -8.754 54.160 15.210 1.00 0.00 N ATOM 133 CA LEU 28 -10.016 53.528 15.463 1.00 0.00 C ATOM 134 CB LEU 28 -11.201 54.403 14.995 1.00 0.00 C ATOM 135 C LEU 28 -10.033 52.221 14.732 1.00 0.00 C ATOM 136 O LEU 28 -10.491 51.211 15.263 1.00 0.00 O ATOM 137 N GLN 29 -9.515 52.210 13.492 1.00 0.00 N ATOM 138 CA GLN 29 -9.527 51.029 12.679 1.00 0.00 C ATOM 139 CB GLN 29 -8.943 51.300 11.278 1.00 0.00 C ATOM 140 C GLN 29 -8.710 49.975 13.354 1.00 0.00 C ATOM 141 O GLN 29 -9.084 48.803 13.370 1.00 0.00 O ATOM 142 N GLU 30 -7.564 50.354 13.946 1.00 0.00 N ATOM 143 CA GLU 30 -6.758 49.350 14.576 1.00 0.00 C ATOM 144 CB GLU 30 -5.450 49.895 15.173 1.00 0.00 C ATOM 145 C GLU 30 -7.532 48.756 15.713 1.00 0.00 C ATOM 146 O GLU 30 -7.546 47.540 15.894 1.00 0.00 O ATOM 147 N LYS 31 -8.214 49.608 16.500 1.00 0.00 N ATOM 148 CA LYS 31 -8.929 49.131 17.647 1.00 0.00 C ATOM 149 CB LYS 31 -9.588 50.248 18.475 1.00 0.00 C ATOM 150 C LYS 31 -10.017 48.201 17.221 1.00 0.00 C ATOM 151 O LYS 31 -10.254 47.185 17.872 1.00 0.00 O ATOM 152 N ILE 32 -10.713 48.514 16.114 1.00 0.00 N ATOM 153 CA ILE 32 -11.803 47.672 15.726 1.00 0.00 C ATOM 154 CB ILE 32 -12.574 48.198 14.536 1.00 0.00 C ATOM 155 C ILE 32 -11.258 46.311 15.416 1.00 0.00 C ATOM 156 O ILE 32 -11.836 45.300 15.810 1.00 0.00 O ATOM 157 N GLU 33 -10.109 46.246 14.718 1.00 0.00 N ATOM 158 CA GLU 33 -9.549 44.985 14.336 1.00 0.00 C ATOM 159 CB GLU 33 -8.314 45.127 13.435 1.00 0.00 C ATOM 160 C GLU 33 -9.155 44.213 15.558 1.00 0.00 C ATOM 161 O GLU 33 -9.324 42.995 15.604 1.00 0.00 O ATOM 162 N GLU 34 -8.619 44.894 16.586 1.00 0.00 N ATOM 163 CA GLU 34 -8.213 44.201 17.774 1.00 0.00 C ATOM 164 CB GLU 34 -7.642 45.141 18.852 1.00 0.00 C ATOM 165 C GLU 34 -9.419 43.549 18.368 1.00 0.00 C ATOM 166 O GLU 34 -9.358 42.403 18.810 1.00 0.00 O ATOM 167 N LEU 35 -10.557 44.265 18.381 1.00 0.00 N ATOM 168 CA LEU 35 -11.738 43.727 18.980 1.00 0.00 C ATOM 169 CB LEU 35 -12.935 44.692 18.925 1.00 0.00 C ATOM 170 C LEU 35 -12.138 42.499 18.232 1.00 0.00 C ATOM 171 O LEU 35 -12.454 41.475 18.837 1.00 0.00 O ATOM 172 N ARG 36 -12.117 42.559 16.888 1.00 0.00 N ATOM 173 CA ARG 36 -12.550 41.431 16.116 1.00 0.00 C ATOM 174 CB ARG 36 -12.552 41.678 14.596 1.00 0.00 C ATOM 175 C ARG 36 -11.662 40.259 16.363 1.00 0.00 C ATOM 176 O ARG 36 -12.145 39.138 16.519 1.00 0.00 O ATOM 177 N GLN 37 -10.336 40.475 16.417 1.00 0.00 N ATOM 178 CA GLN 37 -9.454 39.354 16.562 1.00 0.00 C ATOM 179 CB GLN 37 -7.970 39.754 16.583 1.00 0.00 C ATOM 180 C GLN 37 -9.714 38.673 17.861 1.00 0.00 C ATOM 181 O GLN 37 -9.814 37.448 17.919 1.00 0.00 O ATOM 182 N ARG 38 -9.852 39.457 18.943 1.00 0.00 N ATOM 183 CA ARG 38 -10.009 38.872 20.239 1.00 0.00 C ATOM 184 CB ARG 38 -10.092 39.929 21.351 1.00 0.00 C ATOM 185 C ARG 38 -11.277 38.086 20.280 1.00 0.00 C ATOM 186 O ARG 38 -11.299 36.950 20.752 1.00 0.00 O ATOM 187 N ASP 39 -12.368 38.670 19.754 1.00 0.00 N ATOM 188 CA ASP 39 -13.652 38.039 19.836 1.00 0.00 C ATOM 189 CB ASP 39 -14.791 38.905 19.272 1.00 0.00 C ATOM 190 C ASP 39 -13.652 36.750 19.086 1.00 0.00 C ATOM 191 O ASP 39 -14.160 35.744 19.576 1.00 0.00 O ATOM 192 N ALA 40 -13.065 36.731 17.878 1.00 0.00 N ATOM 193 CA ALA 40 -13.125 35.531 17.099 1.00 0.00 C ATOM 194 CB ALA 40 -12.445 35.679 15.727 1.00 0.00 C ATOM 195 C ALA 40 -12.423 34.435 17.829 1.00 0.00 C ATOM 196 O ALA 40 -12.922 33.314 17.912 1.00 0.00 O ATOM 197 N LEU 41 -11.248 34.744 18.407 1.00 0.00 N ATOM 198 CA LEU 41 -10.460 33.741 19.055 1.00 0.00 C ATOM 199 CB LEU 41 -9.107 34.281 19.542 1.00 0.00 C ATOM 200 C LEU 41 -11.191 33.192 20.242 1.00 0.00 C ATOM 201 O LEU 41 -11.216 31.981 20.454 1.00 0.00 O ATOM 202 N ILE 42 -11.814 34.074 21.046 1.00 0.00 N ATOM 203 CA ILE 42 -12.463 33.667 22.260 1.00 0.00 C ATOM 204 CB ILE 42 -12.997 34.840 23.030 1.00 0.00 C ATOM 205 C ILE 42 -13.627 32.778 21.951 1.00 0.00 C ATOM 206 O ILE 42 -13.796 31.727 22.569 1.00 0.00 O ATOM 207 N ASP 43 -14.455 33.170 20.966 1.00 0.00 N ATOM 208 CA ASP 43 -15.654 32.441 20.669 1.00 0.00 C ATOM 209 CB ASP 43 -16.447 33.077 19.510 1.00 0.00 C ATOM 210 C ASP 43 -15.296 31.057 20.246 1.00 0.00 C ATOM 211 O ASP 43 -15.854 30.074 20.735 1.00 0.00 O ATOM 212 N GLU 44 -14.313 30.953 19.341 1.00 0.00 N ATOM 213 CA GLU 44 -13.907 29.704 18.778 1.00 0.00 C ATOM 214 CB GLU 44 -12.763 29.901 17.769 1.00 0.00 C ATOM 215 C GLU 44 -13.384 28.817 19.857 1.00 0.00 C ATOM 216 O GLU 44 -13.679 27.626 19.885 1.00 0.00 O ATOM 217 N LEU 45 -12.600 29.385 20.787 1.00 0.00 N ATOM 218 CA LEU 45 -11.968 28.571 21.782 1.00 0.00 C ATOM 219 CB LEU 45 -11.097 29.391 22.746 1.00 0.00 C ATOM 220 C LEU 45 -12.985 27.874 22.624 1.00 0.00 C ATOM 221 O LEU 45 -12.913 26.660 22.805 1.00 0.00 O ATOM 222 N GLU 46 -13.973 28.611 23.156 1.00 0.00 N ATOM 223 CA GLU 46 -14.873 27.953 24.055 1.00 0.00 C ATOM 224 CB GLU 46 -15.861 28.916 24.735 1.00 0.00 C ATOM 225 C GLU 46 -15.674 26.937 23.311 1.00 0.00 C ATOM 226 O GLU 46 -15.796 25.789 23.734 1.00 0.00 O ATOM 227 N LEU 47 -16.221 27.335 22.151 1.00 0.00 N ATOM 228 CA LEU 47 -17.091 26.445 21.447 1.00 0.00 C ATOM 229 CB LEU 47 -17.774 27.106 20.241 1.00 0.00 C ATOM 230 C LEU 47 -16.371 25.225 20.970 1.00 0.00 C ATOM 231 O LEU 47 -16.843 24.108 21.181 1.00 0.00 O ATOM 232 N GLU 48 -15.196 25.391 20.341 1.00 0.00 N ATOM 233 CA GLU 48 -14.565 24.242 19.767 1.00 0.00 C ATOM 234 CB GLU 48 -13.317 24.573 18.932 1.00 0.00 C ATOM 235 C GLU 48 -14.154 23.288 20.834 1.00 0.00 C ATOM 236 O GLU 48 -14.369 22.084 20.707 1.00 0.00 O ATOM 237 N LEU 49 -13.572 23.795 21.933 1.00 0.00 N ATOM 238 CA LEU 49 -13.082 22.887 22.926 1.00 0.00 C ATOM 239 CB LEU 49 -12.329 23.571 24.078 1.00 0.00 C ATOM 240 C LEU 49 -14.209 22.103 23.515 1.00 0.00 C ATOM 241 O LEU 49 -14.102 20.889 23.681 1.00 0.00 O ATOM 242 N ASP 50 -15.332 22.767 23.835 1.00 0.00 N ATOM 243 CA ASP 50 -16.401 22.073 24.490 1.00 0.00 C ATOM 244 CB ASP 50 -17.572 23.009 24.843 1.00 0.00 C ATOM 245 C ASP 50 -16.922 20.996 23.594 1.00 0.00 C ATOM 246 O ASP 50 -17.079 19.848 24.010 1.00 0.00 O ATOM 247 N GLN 51 -17.169 21.331 22.317 1.00 0.00 N ATOM 248 CA GLN 51 -17.758 20.363 21.443 1.00 0.00 C ATOM 249 CB GLN 51 -18.079 20.923 20.046 1.00 0.00 C ATOM 250 C GLN 51 -16.827 19.212 21.271 1.00 0.00 C ATOM 251 O GLN 51 -17.254 18.059 21.274 1.00 0.00 O ATOM 252 N LYS 52 -15.521 19.488 21.124 1.00 0.00 N ATOM 253 CA LYS 52 -14.615 18.409 20.880 1.00 0.00 C ATOM 254 CB LYS 52 -13.184 18.848 20.541 1.00 0.00 C ATOM 255 C LYS 52 -14.553 17.503 22.069 1.00 0.00 C ATOM 256 O LYS 52 -14.483 16.286 21.917 1.00 0.00 O ATOM 257 N ASP 53 -14.570 18.066 23.291 1.00 0.00 N ATOM 258 CA ASP 53 -14.451 17.247 24.463 1.00 0.00 C ATOM 259 CB ASP 53 -14.409 18.068 25.765 1.00 0.00 C ATOM 260 C ASP 53 -15.628 16.335 24.563 1.00 0.00 C ATOM 261 O ASP 53 -15.479 15.152 24.858 1.00 0.00 O ATOM 262 N GLU 54 -16.846 16.853 24.322 1.00 0.00 N ATOM 263 CA GLU 54 -17.966 15.983 24.507 1.00 0.00 C ATOM 264 CB GLU 54 -19.339 16.677 24.453 1.00 0.00 C ATOM 265 C GLU 54 -17.935 14.866 23.511 1.00 0.00 C ATOM 266 O GLU 54 -18.202 13.718 23.861 1.00 0.00 O ATOM 267 N LEU 55 -17.603 15.159 22.240 1.00 0.00 N ATOM 268 CA LEU 55 -17.582 14.122 21.246 1.00 0.00 C ATOM 269 CB LEU 55 -17.356 14.676 19.822 1.00 0.00 C ATOM 270 C LEU 55 -16.489 13.150 21.567 1.00 0.00 C ATOM 271 O LEU 55 -16.690 11.939 21.505 1.00 0.00 O ATOM 272 N ILE 56 -15.307 13.656 21.960 1.00 0.00 N ATOM 273 CA ILE 56 -14.187 12.790 22.181 1.00 0.00 C ATOM 274 CB ILE 56 -12.917 13.521 22.530 1.00 0.00 C ATOM 275 C ILE 56 -14.511 11.845 23.287 1.00 0.00 C ATOM 276 O ILE 56 -14.217 10.657 23.198 1.00 0.00 O ATOM 277 N GLN 57 -15.141 12.348 24.362 1.00 0.00 N ATOM 278 CA GLN 57 -15.416 11.514 25.490 1.00 0.00 C ATOM 279 CB GLN 57 -16.087 12.275 26.649 1.00 0.00 C ATOM 280 C GLN 57 -16.357 10.430 25.078 1.00 0.00 C ATOM 281 O GLN 57 -16.157 9.261 25.408 1.00 0.00 O ATOM 282 N MET 58 -17.388 10.785 24.294 1.00 0.00 N ATOM 283 CA MET 58 -18.402 9.833 23.954 1.00 0.00 C ATOM 284 CB MET 58 -19.479 10.436 23.038 1.00 0.00 C ATOM 285 C MET 58 -17.795 8.686 23.216 1.00 0.00 C ATOM 286 O MET 58 -18.065 7.528 23.529 1.00 0.00 O ATOM 287 N LEU 59 -16.947 8.974 22.214 1.00 0.00 N ATOM 288 CA LEU 59 -16.403 7.907 21.431 1.00 0.00 C ATOM 289 CB LEU 59 -15.671 8.398 20.167 1.00 0.00 C ATOM 290 C LEU 59 -15.480 7.051 22.241 1.00 0.00 C ATOM 291 O LEU 59 -15.570 5.825 22.196 1.00 0.00 O ATOM 292 N GLN 60 -14.582 7.664 23.034 1.00 0.00 N ATOM 293 CA GLN 60 -13.637 6.858 23.749 1.00 0.00 C ATOM 294 CB GLN 60 -12.564 7.665 24.503 1.00 0.00 C ATOM 295 C GLN 60 -14.378 6.038 24.746 1.00 0.00 C ATOM 296 O GLN 60 -14.046 4.878 24.987 1.00 0.00 O ATOM 297 N ASN 61 -15.423 6.633 25.343 1.00 0.00 N ATOM 298 CA ASN 61 -16.181 5.979 26.361 1.00 0.00 C ATOM 299 CB ASN 61 -17.311 6.870 26.899 1.00 0.00 C ATOM 300 C ASN 61 -16.794 4.739 25.790 1.00 0.00 C ATOM 301 O ASN 61 -16.784 3.690 26.430 1.00 0.00 O ATOM 302 N GLU 62 -17.333 4.822 24.560 1.00 0.00 N ATOM 303 CA GLU 62 -17.972 3.688 23.959 1.00 0.00 C ATOM 304 CB GLU 62 -18.565 4.018 22.580 1.00 0.00 C ATOM 305 C GLU 62 -16.956 2.613 23.772 1.00 0.00 C ATOM 306 O GLU 62 -17.217 1.441 24.041 1.00 0.00 O ATOM 307 N LEU 63 -15.750 2.992 23.315 1.00 0.00 N ATOM 308 CA LEU 63 -14.740 2.007 23.061 1.00 0.00 C ATOM 309 CB LEU 63 -13.467 2.613 22.433 1.00 0.00 C ATOM 310 C LEU 63 -14.370 1.347 24.351 1.00 0.00 C ATOM 311 O LEU 63 -14.258 0.123 24.421 1.00 0.00 O ATOM 312 N ASP 64 -14.192 2.147 25.417 1.00 0.00 N ATOM 313 CA ASP 64 -13.768 1.634 26.688 1.00 0.00 C ATOM 314 CB ASP 64 -13.513 2.740 27.725 1.00 0.00 C ATOM 315 C ASP 64 -14.810 0.720 27.245 1.00 0.00 C ATOM 316 O ASP 64 -14.484 -0.285 27.875 1.00 0.00 O ATOM 317 N LYS 65 -16.096 1.043 27.034 1.00 0.00 N ATOM 318 CA LYS 65 -17.154 0.248 27.588 1.00 0.00 C ATOM 319 CB LYS 65 -18.540 0.816 27.240 1.00 0.00 C ATOM 320 C LYS 65 -17.044 -1.130 27.016 1.00 0.00 C ATOM 321 O LYS 65 -17.152 -2.124 27.730 1.00 0.00 O ATOM 322 N TYR 66 -16.805 -1.212 25.698 1.00 0.00 N ATOM 323 CA TYR 66 -16.682 -2.470 25.026 1.00 0.00 C ATOM 324 CB TYR 66 -16.454 -2.271 23.516 1.00 0.00 C ATOM 325 C TYR 66 -15.489 -3.172 25.593 1.00 0.00 C ATOM 326 O TYR 66 -15.518 -4.369 25.872 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 244 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 18.10 95.8 96 100.0 96 ARMSMC SECONDARY STRUCTURE . . 16.93 98.9 92 100.0 92 ARMSMC SURFACE . . . . . . . . 18.10 95.8 96 100.0 96 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.95 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.95 49 100.0 49 CRMSCA CRN = ALL/NP . . . . . 0.0602 CRMSCA SECONDARY STRUCTURE . . 2.53 46 100.0 46 CRMSCA SURFACE . . . . . . . . 2.95 49 100.0 49 CRMSCA BURIED . . . . . . . . 0.00 0 0.0 0 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.87 244 100.0 244 CRMSMC SECONDARY STRUCTURE . . 2.51 230 100.0 230 CRMSMC SURFACE . . . . . . . . 2.87 244 100.0 244 CRMSMC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.49 48 21.7 221 CRMSSC RELIABLE SIDE CHAINS . 3.49 48 25.9 185 CRMSSC SECONDARY STRUCTURE . . 3.17 46 22.3 206 CRMSSC SURFACE . . . . . . . . 3.49 48 21.7 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.87 244 58.5 417 CRMSALL SECONDARY STRUCTURE . . 2.51 230 59.0 390 CRMSALL SURFACE . . . . . . . . 2.87 244 58.5 417 CRMSALL BURIED . . . . . . . . 0.00 0 0.0 0 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.504 1.000 0.500 49 100.0 49 ERRCA SECONDARY STRUCTURE . . 2.275 1.000 0.500 46 100.0 46 ERRCA SURFACE . . . . . . . . 2.504 1.000 0.500 49 100.0 49 ERRCA BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.454 1.000 0.500 244 100.0 244 ERRMC SECONDARY STRUCTURE . . 2.263 1.000 0.500 230 100.0 230 ERRMC SURFACE . . . . . . . . 2.454 1.000 0.500 244 100.0 244 ERRMC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.049 1.000 0.500 48 21.7 221 ERRSC RELIABLE SIDE CHAINS . 3.049 1.000 0.500 48 25.9 185 ERRSC SECONDARY STRUCTURE . . 2.876 1.000 0.500 46 22.3 206 ERRSC SURFACE . . . . . . . . 3.049 1.000 0.500 48 21.7 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.454 1.000 0.500 244 58.5 417 ERRALL SECONDARY STRUCTURE . . 2.263 1.000 0.500 230 59.0 390 ERRALL SURFACE . . . . . . . . 2.454 1.000 0.500 244 58.5 417 ERRALL BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 7 20 35 47 49 49 49 DISTCA CA (P) 14.29 40.82 71.43 95.92 100.00 49 DISTCA CA (RMS) 0.54 1.42 1.94 2.52 2.95 DISTCA ALL (N) 33 100 178 233 242 244 417 DISTALL ALL (P) 7.91 23.98 42.69 55.88 58.03 417 DISTALL ALL (RMS) 0.71 1.38 1.93 2.46 2.72 DISTALL END of the results output