####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 273), selected 44 , name T0605TS461_1-D1 # Molecule2: number of CA atoms 49 ( 417), selected 44 , name T0605-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0605TS461_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 33 - 61 4.81 21.01 LCS_AVERAGE: 55.15 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 38 - 60 1.95 22.56 LONGEST_CONTINUOUS_SEGMENT: 23 39 - 61 1.91 22.92 LCS_AVERAGE: 41.70 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 38 - 53 0.99 21.67 LONGEST_CONTINUOUS_SEGMENT: 16 46 - 61 0.89 24.67 LCS_AVERAGE: 28.62 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 18 R 18 5 5 23 3 4 5 5 5 5 6 6 10 14 18 20 21 21 21 22 23 23 24 24 LCS_GDT G 19 G 19 5 18 23 3 4 12 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT S 20 S 20 5 18 23 3 4 5 5 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT L 21 L 21 5 18 23 3 4 5 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT R 22 R 22 14 18 23 3 3 5 12 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT D 23 D 23 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT L 24 L 24 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT Q 25 Q 25 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT Y 26 Y 26 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT A 27 A 27 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT L 28 L 28 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT Q 29 Q 29 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT E 30 E 30 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 24 24 LCS_GDT K 31 K 31 14 18 23 10 12 13 14 15 16 16 17 18 18 18 20 21 21 21 22 23 23 26 27 LCS_GDT I 32 I 32 14 18 26 10 12 13 14 15 16 16 17 18 18 18 20 21 22 23 26 28 29 30 30 LCS_GDT E 33 E 33 14 18 29 9 12 13 14 15 16 16 17 18 18 18 20 21 22 23 26 26 29 30 30 LCS_GDT E 34 E 34 14 18 29 4 12 13 14 15 16 16 17 18 18 18 20 22 23 26 27 28 29 30 30 LCS_GDT L 35 L 35 14 18 29 4 7 13 14 15 16 16 17 18 18 21 26 27 27 27 27 28 29 30 30 LCS_GDT R 36 R 36 14 18 29 4 4 12 14 15 16 16 17 18 23 26 26 27 27 27 27 28 29 30 30 LCS_GDT Q 37 Q 37 3 18 29 3 3 4 7 10 12 15 21 23 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT R 38 R 38 16 23 29 10 12 15 16 19 21 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT D 39 D 39 16 23 29 10 12 15 17 19 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT A 40 A 40 16 23 29 10 12 15 17 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT L 41 L 41 16 23 29 10 12 15 17 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT I 42 I 42 16 23 29 10 12 15 17 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT D 43 D 43 16 23 29 10 12 15 17 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT E 44 E 44 16 23 29 10 12 15 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT L 45 L 45 16 23 29 10 12 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT E 46 E 46 16 23 29 10 12 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT L 47 L 47 16 23 29 10 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT E 48 E 48 16 23 29 8 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT L 49 L 49 16 23 29 10 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT D 50 D 50 16 23 29 6 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT Q 51 Q 51 16 23 29 7 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT K 52 K 52 16 23 29 7 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT D 53 D 53 16 23 29 7 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT E 54 E 54 16 23 29 7 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT L 55 L 55 16 23 29 7 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT I 56 I 56 16 23 29 7 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT Q 57 Q 57 16 23 29 6 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT M 58 M 58 16 23 29 6 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT L 59 L 59 16 23 29 7 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT Q 60 Q 60 16 23 29 3 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_GDT N 61 N 61 16 23 29 3 13 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 LCS_AVERAGE LCS_A: 41.82 ( 28.62 41.70 55.15 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 14 16 18 20 22 23 24 24 25 26 26 27 27 27 27 28 29 30 30 GDT PERCENT_AT 20.41 28.57 32.65 36.73 40.82 44.90 46.94 48.98 48.98 51.02 53.06 53.06 55.10 55.10 55.10 55.10 57.14 59.18 61.22 61.22 GDT RMS_LOCAL 0.19 0.68 0.89 1.17 1.46 1.76 1.91 2.05 2.05 2.52 3.08 3.08 3.46 3.46 3.46 3.46 4.16 4.67 5.17 5.17 GDT RMS_ALL_AT 31.78 25.03 24.67 24.12 23.56 23.16 22.92 22.70 22.70 22.33 22.09 22.09 21.91 21.91 21.91 21.91 21.41 21.10 20.76 20.76 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 18 R 18 55.069 5 0.055 0.058 56.997 0.000 0.000 LGA G 19 G 19 54.816 0 0.214 0.214 54.816 0.000 0.000 LGA S 20 S 20 50.902 1 0.255 0.247 52.440 0.000 0.000 LGA L 21 L 21 46.240 2 0.405 0.432 47.874 0.000 0.000 LGA R 22 R 22 45.455 6 0.103 0.098 45.794 0.000 0.000 LGA D 23 D 23 41.481 2 0.187 0.764 43.193 0.000 0.000 LGA L 24 L 24 36.969 2 0.044 0.524 39.072 0.000 0.000 LGA Q 25 Q 25 34.555 3 0.057 0.730 36.167 0.000 0.000 LGA Y 26 Y 26 34.219 5 0.041 0.530 44.213 0.000 0.000 LGA A 27 A 27 29.849 0 0.033 0.037 31.908 0.000 0.000 LGA L 28 L 28 25.309 2 0.028 0.642 27.562 0.000 0.000 LGA Q 29 Q 29 25.151 3 0.064 0.592 28.219 0.000 0.000 LGA E 30 E 30 24.408 4 0.031 0.036 25.980 0.000 0.000 LGA K 31 K 31 18.434 3 0.033 0.114 20.881 0.000 0.000 LGA I 32 I 32 15.652 0 0.033 1.374 17.668 0.000 0.000 LGA E 33 E 33 18.561 3 0.094 0.747 22.072 0.000 0.000 LGA E 34 E 34 16.366 0 0.102 0.897 20.885 0.000 0.000 LGA L 35 L 35 11.384 0 0.042 1.279 13.661 0.357 0.179 LGA R 36 R 36 11.164 4 0.368 0.949 16.495 0.476 0.173 LGA Q 37 Q 37 8.180 3 0.622 0.621 11.048 7.381 3.439 LGA R 38 R 38 3.603 4 0.653 1.004 4.224 48.810 30.779 LGA D 39 D 39 3.120 2 0.043 0.636 5.402 55.476 36.429 LGA A 40 A 40 2.168 0 0.035 0.039 2.590 69.048 68.190 LGA L 41 L 41 1.592 2 0.038 0.653 2.312 81.667 57.024 LGA I 42 I 42 0.688 3 0.020 0.035 1.415 90.476 55.417 LGA D 43 D 43 1.140 0 0.036 0.109 2.650 85.952 76.488 LGA E 44 E 44 0.568 0 0.023 1.134 6.971 90.595 65.132 LGA L 45 L 45 1.178 0 0.067 1.009 3.686 79.405 75.714 LGA E 46 E 46 1.785 4 0.048 0.049 2.553 69.048 38.783 LGA L 47 L 47 1.966 2 0.033 0.082 2.211 68.810 52.619 LGA E 48 E 48 2.273 3 0.109 0.610 2.797 64.762 42.328 LGA L 49 L 49 3.024 0 0.034 0.296 4.446 53.571 49.345 LGA D 50 D 50 2.426 2 0.044 0.661 3.868 64.881 45.952 LGA Q 51 Q 51 1.755 3 0.090 0.646 3.662 72.976 45.344 LGA K 52 K 52 1.977 2 0.017 0.848 3.092 72.857 52.328 LGA D 53 D 53 1.808 2 0.033 0.090 2.540 77.143 53.810 LGA E 54 E 54 0.903 3 0.063 0.627 2.144 90.595 56.508 LGA L 55 L 55 0.418 2 0.049 0.593 3.050 97.619 66.369 LGA I 56 I 56 0.135 2 0.028 0.467 3.279 95.238 65.179 LGA Q 57 Q 57 1.845 2 0.040 0.721 3.995 69.048 49.048 LGA M 58 M 58 2.354 3 0.053 0.064 2.854 64.881 40.536 LGA L 59 L 59 2.099 3 0.055 0.060 2.698 62.857 39.524 LGA Q 60 Q 60 2.072 4 0.040 0.047 2.870 60.952 35.185 LGA N 61 N 61 3.287 2 0.525 0.500 4.572 45.476 33.571 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 44 176 176 100.00 371 273 73.58 49 SUMMARY(RMSD_GDC): 16.420 16.226 15.857 35.517 25.212 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 49 4.0 24 2.05 42.347 43.802 1.119 LGA_LOCAL RMSD: 2.045 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 22.695 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 16.420 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.625594 * X + 0.773854 * Y + 0.098905 * Z + 0.373981 Y_new = -0.708255 * X + 0.616519 * Y + -0.343918 * Z + 24.993923 Z_new = -0.327119 * X + 0.145103 * Y + 0.933776 * Z + 40.703976 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.847290 0.333253 0.154160 [DEG: -48.5462 19.0940 8.8327 ] ZXZ: 0.280028 0.365972 -1.153296 [DEG: 16.0444 20.9686 -66.0790 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0605TS461_1-D1 REMARK 2: T0605-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0605TS461_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 49 4.0 24 2.05 43.802 16.42 REMARK ---------------------------------------------------------- MOLECULE T0605TS461_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0605 REMARK MODEL 1 REMARK PARENT N/A ATOM 134 N ARG 18 -11.960 17.085 32.960 1.00 0.00 N ATOM 135 CA ARG 18 -12.422 17.323 31.622 1.00 0.00 C ATOM 136 C ARG 18 -13.899 17.524 31.638 1.00 0.00 C ATOM 137 O ARG 18 -14.424 18.479 31.071 1.00 0.00 O ATOM 138 CB ARG 18 -12.151 16.120 30.700 1.00 0.00 C ATOM 139 CG ARG 18 -12.649 16.293 29.252 1.00 0.00 C ATOM 145 N GLY 19 -14.613 16.639 32.339 1.00 0.00 N ATOM 146 CA GLY 19 -16.040 16.689 32.345 1.00 0.00 C ATOM 147 C GLY 19 -16.529 17.928 33.010 1.00 0.00 C ATOM 148 O GLY 19 -17.592 18.419 32.631 1.00 0.00 O ATOM 149 N SER 20 -15.770 18.473 33.985 1.00 0.00 N ATOM 150 CA SER 20 -16.328 19.473 34.849 1.00 0.00 C ATOM 151 C SER 20 -16.966 20.600 34.119 1.00 0.00 C ATOM 152 O SER 20 -18.189 20.689 34.165 1.00 0.00 O ATOM 153 CB SER 20 -15.314 20.059 35.840 1.00 0.00 C ATOM 155 N LEU 21 -16.252 21.526 33.450 1.00 0.00 N ATOM 156 CA LEU 21 -17.204 22.347 32.758 1.00 0.00 C ATOM 157 C LEU 21 -17.635 21.536 31.585 1.00 0.00 C ATOM 158 O LEU 21 -18.428 20.599 31.658 1.00 0.00 O ATOM 159 CB LEU 21 -16.580 23.642 32.210 1.00 0.00 C ATOM 160 CG LEU 21 -17.585 24.568 31.526 1.00 0.00 C ATOM 163 N ARG 22 -17.151 21.967 30.414 1.00 0.00 N ATOM 164 CA ARG 22 -16.893 21.197 29.253 1.00 0.00 C ATOM 165 C ARG 22 -15.431 21.060 29.410 1.00 0.00 C ATOM 166 O ARG 22 -14.788 20.055 29.121 1.00 0.00 O ATOM 167 CB ARG 22 -17.156 21.930 27.973 1.00 0.00 C ATOM 174 N ASP 23 -14.930 22.214 29.900 1.00 0.00 N ATOM 175 CA ASP 23 -13.583 22.665 30.057 1.00 0.00 C ATOM 176 C ASP 23 -13.575 23.717 29.011 1.00 0.00 C ATOM 177 O ASP 23 -12.614 24.461 28.810 1.00 0.00 O ATOM 178 CB ASP 23 -12.523 21.620 29.680 1.00 0.00 C ATOM 179 CG ASP 23 -11.094 22.134 29.861 1.00 0.00 C ATOM 182 N LEU 24 -14.740 23.790 28.339 1.00 0.00 N ATOM 183 CA LEU 24 -14.984 24.684 27.255 1.00 0.00 C ATOM 184 C LEU 24 -14.904 26.063 27.779 1.00 0.00 C ATOM 185 O LEU 24 -14.318 26.945 27.155 1.00 0.00 O ATOM 186 CB LEU 24 -16.376 24.501 26.623 1.00 0.00 C ATOM 187 CG LEU 24 -16.564 25.270 25.312 1.00 0.00 C ATOM 190 N GLN 25 -15.495 26.298 28.956 1.00 0.00 N ATOM 191 CA GLN 25 -15.398 27.628 29.460 1.00 0.00 C ATOM 192 C GLN 25 -13.968 27.907 29.768 1.00 0.00 C ATOM 193 O GLN 25 -13.457 28.984 29.466 1.00 0.00 O ATOM 194 CB GLN 25 -16.184 27.887 30.752 1.00 0.00 C ATOM 195 CG GLN 25 -16.020 29.345 31.219 1.00 0.00 C ATOM 199 N TYR 26 -13.275 26.913 30.345 1.00 0.00 N ATOM 200 CA TYR 26 -11.916 27.118 30.748 1.00 0.00 C ATOM 201 C TYR 26 -11.153 27.492 29.529 1.00 0.00 C ATOM 202 O TYR 26 -10.291 28.367 29.573 1.00 0.00 O ATOM 203 CB TYR 26 -11.244 25.851 31.303 1.00 0.00 C ATOM 204 CG TYR 26 -11.880 25.298 32.577 1.00 0.00 C ATOM 209 CZ TYR 26 -12.924 22.733 34.156 1.00 0.00 C ATOM 211 N ALA 27 -11.458 26.832 28.402 1.00 0.00 N ATOM 212 CA ALA 27 -10.755 27.096 27.184 1.00 0.00 C ATOM 213 C ALA 27 -10.977 28.516 26.781 1.00 0.00 C ATOM 214 O ALA 27 -10.037 29.216 26.407 1.00 0.00 O ATOM 215 CB ALA 27 -11.253 26.216 26.024 1.00 0.00 C ATOM 216 N LEU 28 -12.230 28.988 26.858 1.00 0.00 N ATOM 217 CA LEU 28 -12.504 30.318 26.411 1.00 0.00 C ATOM 218 C LEU 28 -11.798 31.307 27.290 1.00 0.00 C ATOM 219 O LEU 28 -11.223 32.277 26.798 1.00 0.00 O ATOM 220 CB LEU 28 -14.003 30.658 26.392 1.00 0.00 C ATOM 221 CG LEU 28 -14.267 32.084 25.911 1.00 0.00 C ATOM 224 N GLN 29 -11.807 31.084 28.616 1.00 0.00 N ATOM 225 CA GLN 29 -11.195 32.033 29.498 1.00 0.00 C ATOM 226 C GLN 29 -9.730 32.090 29.202 1.00 0.00 C ATOM 227 O GLN 29 -9.146 33.170 29.137 1.00 0.00 O ATOM 228 CB GLN 29 -11.361 31.667 30.984 1.00 0.00 C ATOM 229 CG GLN 29 -10.954 32.860 31.842 1.00 0.00 C ATOM 233 N GLU 30 -9.099 30.920 28.998 1.00 0.00 N ATOM 234 CA GLU 30 -7.686 30.880 28.766 1.00 0.00 C ATOM 235 C GLU 30 -7.370 31.620 27.504 1.00 0.00 C ATOM 236 O GLU 30 -6.403 32.375 27.445 1.00 0.00 O ATOM 237 CB GLU 30 -7.136 29.453 28.607 1.00 0.00 C ATOM 242 N LYS 31 -8.192 31.432 26.457 1.00 0.00 N ATOM 243 CA LYS 31 -7.916 32.050 25.192 1.00 0.00 C ATOM 244 C LYS 31 -7.964 33.530 25.340 1.00 0.00 C ATOM 245 O LYS 31 -7.105 34.248 24.829 1.00 0.00 O ATOM 246 CB LYS 31 -8.949 31.706 24.106 1.00 0.00 C ATOM 247 CG LYS 31 -8.958 30.232 23.669 1.00 0.00 C ATOM 251 N ILE 32 -8.986 34.034 26.045 1.00 0.00 N ATOM 252 CA ILE 32 -9.098 35.451 26.134 1.00 0.00 C ATOM 253 C ILE 32 -7.934 36.009 26.900 1.00 0.00 C ATOM 254 O ILE 32 -7.299 36.962 26.456 1.00 0.00 O ATOM 255 CB ILE 32 -10.403 35.889 26.766 1.00 0.00 C ATOM 256 CG1 ILE 32 -10.678 37.385 26.532 1.00 0.00 C ATOM 257 CG2 ILE 32 -10.410 35.482 28.248 1.00 0.00 C ATOM 258 CD1 ILE 32 -9.698 38.339 27.217 1.00 0.00 C ATOM 259 N GLU 33 -7.599 35.423 28.066 1.00 0.00 N ATOM 260 CA GLU 33 -6.556 36.000 28.863 1.00 0.00 C ATOM 261 C GLU 33 -5.227 35.902 28.183 1.00 0.00 C ATOM 262 O GLU 33 -4.528 36.899 28.010 1.00 0.00 O ATOM 263 CB GLU 33 -6.387 35.301 30.223 1.00 0.00 C ATOM 264 CG GLU 33 -7.574 35.642 31.111 1.00 0.00 C ATOM 268 N GLU 34 -4.848 34.676 27.782 1.00 0.00 N ATOM 269 CA GLU 34 -3.535 34.448 27.255 1.00 0.00 C ATOM 270 C GLU 34 -3.361 35.119 25.929 1.00 0.00 C ATOM 271 O GLU 34 -2.439 35.910 25.734 1.00 0.00 O ATOM 272 CB GLU 34 -3.286 32.940 27.076 1.00 0.00 C ATOM 273 CG GLU 34 -1.842 32.557 26.765 1.00 0.00 C ATOM 274 CD GLU 34 -1.738 31.043 26.918 1.00 0.00 C ATOM 275 OE1 GLU 34 -1.784 30.568 28.085 1.00 0.00 O ATOM 276 OE2 GLU 34 -1.614 30.344 25.878 1.00 0.00 O ATOM 277 N LEU 35 -4.266 34.796 24.985 1.00 0.00 N ATOM 278 CA LEU 35 -4.255 35.266 23.629 1.00 0.00 C ATOM 279 C LEU 35 -4.704 36.687 23.523 1.00 0.00 C ATOM 280 O LEU 35 -4.283 37.408 22.620 1.00 0.00 O ATOM 281 CB LEU 35 -5.179 34.457 22.702 1.00 0.00 C ATOM 282 CG LEU 35 -4.817 32.968 22.577 1.00 0.00 C ATOM 283 CD1 LEU 35 -5.106 32.204 23.879 1.00 0.00 C ATOM 284 CD2 LEU 35 -5.481 32.336 21.346 1.00 0.00 C ATOM 285 N ARG 36 -5.600 37.119 24.428 1.00 0.00 N ATOM 286 CA ARG 36 -6.226 38.402 24.305 1.00 0.00 C ATOM 287 C ARG 36 -7.007 38.382 23.032 1.00 0.00 C ATOM 288 O ARG 36 -7.115 39.381 22.321 1.00 0.00 O ATOM 289 CB ARG 36 -5.249 39.588 24.306 1.00 0.00 C ATOM 290 CG ARG 36 -4.629 39.832 25.685 1.00 0.00 C ATOM 291 CD ARG 36 -5.754 40.171 26.653 1.00 0.00 C ATOM 296 N GLN 37 -7.592 37.209 22.723 1.00 0.00 N ATOM 297 CA GLN 37 -8.404 37.080 21.558 1.00 0.00 C ATOM 298 C GLN 37 -9.717 37.700 21.861 1.00 0.00 C ATOM 299 O GLN 37 -10.122 37.804 23.018 1.00 0.00 O ATOM 300 CB GLN 37 -8.686 35.631 21.122 1.00 0.00 C ATOM 301 CG GLN 37 -7.467 34.871 20.572 1.00 0.00 C ATOM 305 N ARG 38 -10.402 38.147 20.796 1.00 0.00 N ATOM 306 CA ARG 38 -11.697 38.722 20.933 1.00 0.00 C ATOM 307 C ARG 38 -12.561 37.566 21.302 1.00 0.00 C ATOM 308 O ARG 38 -12.207 36.416 21.046 1.00 0.00 O ATOM 309 CB ARG 38 -12.212 39.326 19.621 1.00 0.00 C ATOM 310 CG ARG 38 -11.239 40.348 19.034 1.00 0.00 C ATOM 311 CD ARG 38 -10.125 39.558 18.356 1.00 0.00 C ATOM 316 N ASP 39 -13.711 37.833 21.933 1.00 0.00 N ATOM 317 CA ASP 39 -14.529 36.754 22.389 1.00 0.00 C ATOM 318 C ASP 39 -14.927 35.943 21.192 1.00 0.00 C ATOM 319 O ASP 39 -14.941 34.715 21.240 1.00 0.00 O ATOM 320 CB ASP 39 -15.778 37.266 23.127 1.00 0.00 C ATOM 321 CG ASP 39 -16.705 36.184 23.715 1.00 0.00 C ATOM 324 N ALA 40 -15.242 36.611 20.068 1.00 0.00 N ATOM 325 CA ALA 40 -15.679 35.926 18.883 1.00 0.00 C ATOM 326 C ALA 40 -14.579 35.049 18.366 1.00 0.00 C ATOM 327 O ALA 40 -14.815 33.904 17.986 1.00 0.00 O ATOM 328 CB ALA 40 -16.038 36.906 17.757 1.00 0.00 C ATOM 329 N LEU 41 -13.335 35.561 18.356 1.00 0.00 N ATOM 330 CA LEU 41 -12.242 34.821 17.792 1.00 0.00 C ATOM 331 C LEU 41 -12.066 33.567 18.579 1.00 0.00 C ATOM 332 O LEU 41 -11.900 32.482 18.021 1.00 0.00 O ATOM 333 CB LEU 41 -10.919 35.602 17.887 1.00 0.00 C ATOM 334 CG LEU 41 -9.728 34.910 17.225 1.00 0.00 C ATOM 337 N ILE 42 -12.123 33.693 19.913 1.00 0.00 N ATOM 338 CA ILE 42 -11.913 32.571 20.774 1.00 0.00 C ATOM 339 C ILE 42 -12.993 31.561 20.562 1.00 0.00 C ATOM 340 O ILE 42 -12.731 30.361 20.492 1.00 0.00 O ATOM 341 CB ILE 42 -11.915 32.983 22.252 1.00 0.00 C ATOM 345 N ASP 43 -14.245 32.023 20.412 1.00 0.00 N ATOM 346 CA ASP 43 -15.336 31.097 20.310 1.00 0.00 C ATOM 347 C ASP 43 -15.139 30.211 19.125 1.00 0.00 C ATOM 348 O ASP 43 -15.413 29.014 19.196 1.00 0.00 O ATOM 349 CB ASP 43 -16.708 31.767 20.138 1.00 0.00 C ATOM 350 CG ASP 43 -17.161 32.319 21.481 1.00 0.00 C ATOM 351 OD1 ASP 43 -16.491 32.035 22.508 1.00 0.00 O ATOM 352 OD2 ASP 43 -18.207 33.021 21.493 1.00 0.00 O ATOM 353 N GLU 44 -14.658 30.759 17.998 1.00 0.00 N ATOM 354 CA GLU 44 -14.553 29.918 16.841 1.00 0.00 C ATOM 355 C GLU 44 -13.577 28.814 17.106 1.00 0.00 C ATOM 356 O GLU 44 -13.836 27.656 16.780 1.00 0.00 O ATOM 357 CB GLU 44 -14.104 30.662 15.570 1.00 0.00 C ATOM 358 CG GLU 44 -12.724 31.314 15.664 1.00 0.00 C ATOM 359 CD GLU 44 -12.453 31.992 14.329 1.00 0.00 C ATOM 360 OE1 GLU 44 -13.240 31.749 13.376 1.00 0.00 O ATOM 361 OE2 GLU 44 -11.456 32.757 14.239 1.00 0.00 O ATOM 362 N LEU 45 -12.435 29.144 17.732 1.00 0.00 N ATOM 363 CA LEU 45 -11.414 28.171 17.994 1.00 0.00 C ATOM 364 C LEU 45 -11.968 27.140 18.922 1.00 0.00 C ATOM 365 O LEU 45 -11.752 25.941 18.743 1.00 0.00 O ATOM 366 CB LEU 45 -10.172 28.832 18.634 1.00 0.00 C ATOM 367 CG LEU 45 -8.995 27.892 18.971 1.00 0.00 C ATOM 368 CD1 LEU 45 -9.306 26.989 20.177 1.00 0.00 C ATOM 369 CD2 LEU 45 -8.535 27.102 17.737 1.00 0.00 C ATOM 370 N GLU 46 -12.732 27.588 19.934 1.00 0.00 N ATOM 371 CA GLU 46 -13.273 26.695 20.915 1.00 0.00 C ATOM 372 C GLU 46 -14.188 25.741 20.239 1.00 0.00 C ATOM 373 O GLU 46 -14.225 24.563 20.583 1.00 0.00 O ATOM 374 CB GLU 46 -14.060 27.396 21.983 1.00 0.00 C ATOM 379 N LEU 47 -14.959 26.229 19.258 1.00 0.00 N ATOM 380 CA LEU 47 -15.921 25.384 18.622 1.00 0.00 C ATOM 381 C LEU 47 -15.227 24.229 17.972 1.00 0.00 C ATOM 382 O LEU 47 -15.647 23.084 18.128 1.00 0.00 O ATOM 383 CB LEU 47 -16.702 26.109 17.512 1.00 0.00 C ATOM 384 CG LEU 47 -17.741 25.227 16.818 1.00 0.00 C ATOM 387 N GLU 48 -14.133 24.491 17.233 1.00 0.00 N ATOM 388 CA GLU 48 -13.485 23.426 16.522 1.00 0.00 C ATOM 389 C GLU 48 -12.962 22.406 17.477 1.00 0.00 C ATOM 390 O GLU 48 -13.200 21.208 17.326 1.00 0.00 O ATOM 391 CB GLU 48 -12.282 23.933 15.710 1.00 0.00 C ATOM 392 CG GLU 48 -11.541 22.845 14.932 1.00 0.00 C ATOM 396 N LEU 49 -12.246 22.872 18.507 1.00 0.00 N ATOM 397 CA LEU 49 -11.647 21.962 19.429 1.00 0.00 C ATOM 398 C LEU 49 -12.716 21.262 20.195 1.00 0.00 C ATOM 399 O LEU 49 -12.576 20.084 20.519 1.00 0.00 O ATOM 400 CB LEU 49 -10.709 22.631 20.445 1.00 0.00 C ATOM 401 CG LEU 49 -9.432 23.192 19.797 1.00 0.00 C ATOM 402 CD1 LEU 49 -8.463 23.732 20.859 1.00 0.00 C ATOM 403 CD2 LEU 49 -8.779 22.154 18.870 1.00 0.00 C ATOM 404 N ASP 50 -13.820 21.969 20.493 1.00 0.00 N ATOM 405 CA ASP 50 -14.855 21.404 21.303 1.00 0.00 C ATOM 406 C ASP 50 -15.437 20.216 20.619 1.00 0.00 C ATOM 407 O ASP 50 -15.836 19.258 21.279 1.00 0.00 O ATOM 408 CB ASP 50 -15.962 22.400 21.722 1.00 0.00 C ATOM 409 CG ASP 50 -16.819 23.000 20.606 1.00 0.00 C ATOM 412 N GLN 51 -15.510 20.229 19.280 1.00 0.00 N ATOM 413 CA GLN 51 -16.042 19.068 18.638 1.00 0.00 C ATOM 414 C GLN 51 -15.150 17.916 18.983 1.00 0.00 C ATOM 415 O GLN 51 -15.626 16.826 19.301 1.00 0.00 O ATOM 416 CB GLN 51 -16.079 19.172 17.106 1.00 0.00 C ATOM 417 CG GLN 51 -16.836 17.959 16.581 1.00 0.00 C ATOM 421 N LYS 52 -13.822 18.138 18.953 1.00 0.00 N ATOM 422 CA LYS 52 -12.894 17.080 19.234 1.00 0.00 C ATOM 423 C LYS 52 -13.097 16.599 20.638 1.00 0.00 C ATOM 424 O LYS 52 -13.093 15.398 20.900 1.00 0.00 O ATOM 425 CB LYS 52 -11.426 17.531 19.131 1.00 0.00 C ATOM 426 CG LYS 52 -10.431 16.406 19.423 1.00 0.00 C ATOM 427 CD LYS 52 -9.018 16.973 19.406 1.00 0.00 C ATOM 430 N ASP 53 -13.290 17.534 21.584 1.00 0.00 N ATOM 431 CA ASP 53 -13.443 17.190 22.968 1.00 0.00 C ATOM 432 C ASP 53 -14.692 16.399 23.141 1.00 0.00 C ATOM 433 O ASP 53 -14.763 15.509 23.988 1.00 0.00 O ATOM 434 CB ASP 53 -13.541 18.406 23.905 1.00 0.00 C ATOM 435 CG ASP 53 -12.236 19.216 23.999 1.00 0.00 C ATOM 438 N GLU 54 -15.717 16.714 22.337 1.00 0.00 N ATOM 439 CA GLU 54 -16.969 16.039 22.454 1.00 0.00 C ATOM 440 C GLU 54 -16.692 14.592 22.240 1.00 0.00 C ATOM 441 O GLU 54 -17.227 13.736 22.942 1.00 0.00 O ATOM 442 CB GLU 54 -17.962 16.500 21.373 1.00 0.00 C ATOM 443 CG GLU 54 -19.309 15.842 21.622 1.00 0.00 C ATOM 447 N LEU 55 -15.813 14.287 21.271 1.00 0.00 N ATOM 448 CA LEU 55 -15.505 12.924 20.977 1.00 0.00 C ATOM 449 C LEU 55 -14.945 12.297 22.217 1.00 0.00 C ATOM 450 O LEU 55 -15.416 11.251 22.657 1.00 0.00 O ATOM 451 CB LEU 55 -14.407 12.809 19.904 1.00 0.00 C ATOM 452 CG LEU 55 -14.194 11.403 19.340 1.00 0.00 C ATOM 455 N ILE 56 -13.946 12.959 22.834 1.00 0.00 N ATOM 456 CA ILE 56 -13.244 12.425 23.971 1.00 0.00 C ATOM 457 C ILE 56 -14.132 12.306 25.174 1.00 0.00 C ATOM 458 O ILE 56 -14.123 11.291 25.870 1.00 0.00 O ATOM 459 CB ILE 56 -12.023 13.279 24.357 1.00 0.00 C ATOM 462 CD1 ILE 56 -10.259 12.086 23.058 1.00 0.00 C ATOM 463 N GLN 57 -14.936 13.344 25.453 1.00 0.00 N ATOM 464 CA GLN 57 -15.766 13.331 26.622 1.00 0.00 C ATOM 465 C GLN 57 -16.715 12.190 26.509 1.00 0.00 C ATOM 466 O GLN 57 -16.941 11.462 27.472 1.00 0.00 O ATOM 467 CB GLN 57 -16.622 14.602 26.743 1.00 0.00 C ATOM 468 CG GLN 57 -17.557 14.620 27.953 1.00 0.00 C ATOM 469 CD GLN 57 -18.600 15.738 27.884 1.00 0.00 C ATOM 472 N MET 58 -17.289 12.012 25.308 1.00 0.00 N ATOM 473 CA MET 58 -18.274 11.001 25.078 1.00 0.00 C ATOM 474 C MET 58 -17.649 9.649 25.157 1.00 0.00 C ATOM 475 O MET 58 -18.301 8.691 25.568 1.00 0.00 O ATOM 476 CB MET 58 -18.935 11.133 23.696 1.00 0.00 C ATOM 480 N LEU 59 -16.357 9.534 24.786 1.00 0.00 N ATOM 481 CA LEU 59 -15.728 8.245 24.754 1.00 0.00 C ATOM 482 C LEU 59 -15.829 7.647 26.112 1.00 0.00 C ATOM 483 O LEU 59 -16.225 6.491 26.261 1.00 0.00 O ATOM 484 CB LEU 59 -14.269 8.306 24.412 1.00 0.00 C ATOM 488 N GLN 60 -15.493 8.428 27.152 1.00 0.00 N ATOM 489 CA GLN 60 -15.597 7.877 28.465 1.00 0.00 C ATOM 490 C GLN 60 -17.040 7.603 28.737 1.00 0.00 C ATOM 491 O GLN 60 -17.390 6.554 29.275 1.00 0.00 O ATOM 492 CB GLN 60 -15.065 8.770 29.550 1.00 0.00 C ATOM 497 N ASN 61 -17.920 8.545 28.351 1.00 0.00 N ATOM 498 CA ASN 61 -19.321 8.404 28.610 1.00 0.00 C ATOM 499 C ASN 61 -19.861 7.283 27.726 1.00 0.00 C ATOM 500 O ASN 61 -20.628 7.599 26.777 1.00 0.00 O ATOM 501 CB ASN 61 -20.113 9.682 28.288 1.00 0.00 C ATOM 502 CG ASN 61 -19.641 10.904 29.082 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 273 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 42.79 86.0 86 89.6 96 ARMSMC SECONDARY STRUCTURE . . 38.59 88.0 83 90.2 92 ARMSMC SURFACE . . . . . . . . 42.79 86.0 86 89.6 96 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.63 37.5 32 69.6 46 ARMSSC1 RELIABLE SIDE CHAINS . 83.63 37.5 32 69.6 46 ARMSSC1 SECONDARY STRUCTURE . . 84.96 35.5 31 70.5 44 ARMSSC1 SURFACE . . . . . . . . 83.63 37.5 32 69.6 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.17 36.4 11 24.4 45 ARMSSC2 RELIABLE SIDE CHAINS . 94.73 37.5 8 24.2 33 ARMSSC2 SECONDARY STRUCTURE . . 97.17 36.4 11 25.6 43 ARMSSC2 SURFACE . . . . . . . . 97.17 36.4 11 24.4 45 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 36.24 50.0 2 9.1 22 ARMSSC3 RELIABLE SIDE CHAINS . 36.24 50.0 2 12.5 16 ARMSSC3 SECONDARY STRUCTURE . . 36.24 50.0 2 9.5 21 ARMSSC3 SURFACE . . . . . . . . 36.24 50.0 2 9.1 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 16.42 (Number of atoms: 44) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 16.42 44 89.8 49 CRMSCA CRN = ALL/NP . . . . . 0.3732 CRMSCA SECONDARY STRUCTURE . . 14.94 42 91.3 46 CRMSCA SURFACE . . . . . . . . 16.42 44 89.8 49 CRMSCA BURIED . . . . . . . . 0.00 0 0.0 0 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 16.23 219 89.8 244 CRMSMC SECONDARY STRUCTURE . . 14.95 210 91.3 230 CRMSMC SURFACE . . . . . . . . 16.23 219 89.8 244 CRMSMC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 15.27 97 43.9 221 CRMSSC RELIABLE SIDE CHAINS . 15.44 91 49.2 185 CRMSSC SECONDARY STRUCTURE . . 14.36 95 46.1 206 CRMSSC SURFACE . . . . . . . . 15.27 97 43.9 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.90 273 65.5 417 CRMSALL SECONDARY STRUCTURE . . 14.68 263 67.4 390 CRMSALL SURFACE . . . . . . . . 15.90 273 65.5 417 CRMSALL BURIED . . . . . . . . 0.00 0 0.0 0 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.550 1.000 0.500 44 89.8 49 ERRCA SECONDARY STRUCTURE . . 13.564 1.000 0.500 42 91.3 46 ERRCA SURFACE . . . . . . . . 14.550 1.000 0.500 44 89.8 49 ERRCA BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.437 1.000 0.500 219 89.8 244 ERRMC SECONDARY STRUCTURE . . 13.573 1.000 0.500 210 91.3 230 ERRMC SURFACE . . . . . . . . 14.437 1.000 0.500 219 89.8 244 ERRMC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.574 1.000 0.500 97 43.9 221 ERRSC RELIABLE SIDE CHAINS . 13.656 1.000 0.500 91 49.2 185 ERRSC SECONDARY STRUCTURE . . 13.044 1.000 0.500 95 46.1 206 ERRSC SURFACE . . . . . . . . 13.574 1.000 0.500 97 43.9 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.127 1.000 0.500 273 65.5 417 ERRALL SECONDARY STRUCTURE . . 13.330 1.000 0.500 263 67.4 390 ERRALL SURFACE . . . . . . . . 14.127 1.000 0.500 273 65.5 417 ERRALL BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 15 44 49 DISTCA CA (P) 0.00 0.00 0.00 2.04 30.61 49 DISTCA CA (RMS) 0.00 0.00 0.00 3.81 8.20 DISTCA ALL (N) 0 0 0 9 97 273 417 DISTALL ALL (P) 0.00 0.00 0.00 2.16 23.26 417 DISTALL ALL (RMS) 0.00 0.00 0.00 4.12 8.14 DISTALL END of the results output