####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 49 ( 244), selected 49 , name T0605TS444_1-D1 # Molecule2: number of CA atoms 49 ( 417), selected 49 , name T0605-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0605TS444_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 25 - 53 4.89 17.50 LONGEST_CONTINUOUS_SEGMENT: 29 26 - 54 4.95 17.30 LCS_AVERAGE: 52.81 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 32 - 48 1.99 19.82 LCS_AVERAGE: 29.24 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 29 - 38 0.96 18.22 LONGEST_CONTINUOUS_SEGMENT: 10 32 - 41 0.97 17.75 LCS_AVERAGE: 15.99 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 18 R 18 3 11 21 3 3 3 4 7 8 10 11 11 13 14 15 15 17 17 17 18 19 19 21 LCS_GDT G 19 G 19 7 13 21 4 5 7 10 11 12 14 15 16 16 16 18 19 19 20 20 20 21 22 23 LCS_GDT S 20 S 20 9 13 22 4 6 9 10 11 13 14 15 16 16 16 18 19 19 20 20 21 22 22 23 LCS_GDT L 21 L 21 9 13 22 4 6 9 10 12 13 14 15 16 17 17 18 19 20 20 21 21 22 22 23 LCS_GDT R 22 R 22 9 13 22 4 6 9 10 12 13 14 15 16 17 17 18 20 20 20 21 21 22 24 24 LCS_GDT D 23 D 23 9 13 22 6 8 9 10 12 13 15 16 16 17 19 19 20 21 22 25 29 30 31 31 LCS_GDT L 24 L 24 9 13 28 6 8 9 10 12 13 15 16 16 17 19 19 20 20 22 25 29 30 31 31 LCS_GDT Q 25 Q 25 9 13 29 6 8 9 10 12 14 15 16 16 17 19 19 22 24 27 28 29 30 31 32 LCS_GDT Y 26 Y 26 9 13 29 6 8 9 10 12 14 15 16 16 18 20 22 26 27 28 28 29 30 31 32 LCS_GDT A 27 A 27 9 13 29 6 8 9 10 12 14 15 16 18 22 23 25 26 27 28 28 29 30 31 32 LCS_GDT L 28 L 28 9 14 29 6 8 9 11 12 14 15 16 20 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT Q 29 Q 29 10 14 29 3 8 10 12 13 14 17 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT E 30 E 30 10 14 29 3 8 10 12 13 14 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT K 31 K 31 10 14 29 3 8 10 12 13 15 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT I 32 I 32 10 17 29 4 8 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT E 33 E 33 10 17 29 6 8 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT E 34 E 34 10 17 29 6 8 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT L 35 L 35 10 17 29 6 8 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT R 36 R 36 10 17 29 6 8 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT Q 37 Q 37 10 17 29 6 7 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT R 38 R 38 10 17 29 6 7 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT D 39 D 39 10 17 29 6 7 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT A 40 A 40 10 17 29 6 6 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT L 41 L 41 10 17 29 6 7 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT I 42 I 42 7 17 29 6 6 8 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT D 43 D 43 7 17 29 6 6 9 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT E 44 E 44 7 17 29 4 6 9 12 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT L 45 L 45 6 17 29 4 6 9 12 15 18 18 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT E 46 E 46 6 17 29 4 6 9 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT L 47 L 47 6 17 29 4 6 9 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT E 48 E 48 6 17 29 6 6 9 12 16 18 18 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT L 49 L 49 5 16 29 4 5 9 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT D 50 D 50 5 13 29 4 4 7 9 13 15 19 21 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT Q 51 Q 51 6 13 29 4 4 7 9 12 13 13 19 22 23 24 25 26 27 28 28 29 30 31 32 LCS_GDT K 52 K 52 6 13 29 5 5 7 9 12 13 14 15 16 21 22 24 26 27 28 28 29 30 31 32 LCS_GDT D 53 D 53 6 13 29 5 5 7 10 12 13 14 15 16 17 21 24 25 27 28 28 29 30 31 32 LCS_GDT E 54 E 54 6 13 29 5 5 7 10 12 13 14 15 16 17 17 17 17 18 22 26 28 30 31 32 LCS_GDT L 55 L 55 8 13 20 5 5 8 10 12 13 14 15 16 17 17 17 17 18 22 25 27 30 31 32 LCS_GDT I 56 I 56 8 13 20 5 5 8 10 12 13 14 15 16 17 17 17 17 18 22 25 28 30 31 32 LCS_GDT Q 57 Q 57 8 13 20 6 6 8 10 12 13 14 15 16 17 17 17 17 18 18 23 27 29 29 32 LCS_GDT M 58 M 58 8 13 20 6 6 8 10 12 13 14 15 16 17 17 17 17 18 18 19 19 20 20 24 LCS_GDT L 59 L 59 8 13 20 6 6 8 10 12 13 14 15 16 17 17 17 17 18 18 19 19 20 20 23 LCS_GDT Q 60 Q 60 8 13 20 6 6 8 10 12 13 14 15 16 17 17 17 17 18 18 19 19 20 20 23 LCS_GDT N 61 N 61 8 13 20 6 6 8 10 12 13 14 15 16 17 17 17 17 18 18 19 19 20 20 20 LCS_GDT E 62 E 62 8 13 20 6 6 8 10 12 13 14 15 16 17 17 17 17 18 18 19 19 20 20 20 LCS_GDT L 63 L 63 5 11 20 4 4 8 9 10 13 14 15 16 17 17 17 17 18 18 19 19 20 20 20 LCS_GDT D 64 D 64 5 11 20 4 4 8 9 10 13 14 15 16 17 17 17 17 18 18 19 19 20 20 20 LCS_GDT K 65 K 65 5 11 20 3 4 8 9 10 13 14 15 16 17 17 17 17 18 18 19 19 20 20 20 LCS_GDT Y 66 Y 66 5 11 20 3 4 6 9 10 12 14 14 14 17 17 17 17 18 18 18 18 19 20 20 LCS_AVERAGE LCS_A: 32.68 ( 15.99 29.24 52.81 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 8 10 13 16 18 19 21 22 23 24 25 26 27 28 28 29 30 31 32 GDT PERCENT_AT 12.24 16.33 20.41 26.53 32.65 36.73 38.78 42.86 44.90 46.94 48.98 51.02 53.06 55.10 57.14 57.14 59.18 61.22 63.27 65.31 GDT RMS_LOCAL 0.23 0.74 0.96 1.57 1.81 2.05 2.52 2.67 2.86 3.03 3.25 3.55 4.01 4.21 4.52 4.52 4.89 5.55 5.68 6.12 GDT RMS_ALL_AT 44.06 31.10 18.22 19.35 19.46 19.66 18.77 18.90 18.70 18.58 18.53 18.37 18.11 17.74 17.54 17.54 17.50 17.61 17.38 16.64 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 18 R 18 36.378 6 0.150 0.149 37.085 0.000 0.000 LGA G 19 G 19 33.007 0 0.531 0.531 34.004 0.000 0.000 LGA S 20 S 20 26.847 1 0.070 0.072 29.482 0.000 0.000 LGA L 21 L 21 25.481 3 0.025 0.032 27.388 0.000 0.000 LGA R 22 R 22 25.533 6 0.017 0.018 27.678 0.000 0.000 LGA D 23 D 23 19.580 3 0.023 0.025 22.040 0.000 0.000 LGA L 24 L 24 16.918 3 0.137 0.138 18.520 0.000 0.000 LGA Q 25 Q 25 15.608 4 0.031 0.033 17.674 0.000 0.000 LGA Y 26 Y 26 13.660 7 0.102 0.103 15.168 0.119 0.040 LGA A 27 A 27 9.564 0 0.010 0.012 11.351 6.190 4.952 LGA L 28 L 28 7.435 3 0.034 0.046 8.786 17.857 9.524 LGA Q 29 Q 29 5.952 4 0.034 0.051 7.816 24.524 11.693 LGA E 30 E 30 4.841 4 0.075 0.077 5.674 38.333 19.418 LGA K 31 K 31 3.511 4 0.078 0.078 5.001 54.048 26.931 LGA I 32 I 32 1.373 3 0.016 0.027 2.347 84.167 51.190 LGA E 33 E 33 0.828 4 0.103 0.115 1.587 88.214 47.302 LGA E 34 E 34 1.328 4 0.064 0.062 1.952 79.405 43.386 LGA L 35 L 35 1.825 3 0.106 0.108 1.825 72.857 45.536 LGA R 36 R 36 1.601 6 0.003 0.013 2.497 70.952 32.424 LGA Q 37 Q 37 2.593 4 0.088 0.096 3.424 57.262 31.799 LGA R 38 R 38 3.322 6 0.141 0.141 3.671 55.357 24.069 LGA D 39 D 39 2.241 3 0.060 0.069 2.640 66.905 40.595 LGA A 40 A 40 2.382 0 0.025 0.026 3.352 64.762 61.810 LGA L 41 L 41 2.982 3 0.111 0.115 4.301 62.976 36.131 LGA I 42 I 42 2.610 3 0.011 0.026 3.406 60.952 36.726 LGA D 43 D 43 2.349 3 0.197 0.198 3.185 61.190 38.690 LGA E 44 E 44 2.645 4 0.146 0.153 3.286 55.476 31.005 LGA L 45 L 45 3.599 3 0.041 0.049 4.078 48.333 28.810 LGA E 46 E 46 2.065 4 0.015 0.021 2.512 66.905 37.831 LGA L 47 L 47 1.878 3 0.144 0.153 2.147 68.810 42.500 LGA E 48 E 48 3.020 4 0.037 0.047 4.166 63.214 32.222 LGA L 49 L 49 1.275 3 0.036 0.036 3.298 71.667 42.976 LGA D 50 D 50 4.008 3 0.612 0.583 6.269 35.714 24.107 LGA Q 51 Q 51 6.161 4 0.126 0.138 9.632 14.048 8.624 LGA K 52 K 52 10.644 4 0.027 0.025 13.771 1.190 0.529 LGA D 53 D 53 11.249 3 0.012 0.019 14.362 0.000 0.060 LGA E 54 E 54 14.190 4 0.162 0.174 17.366 0.000 0.000 LGA L 55 L 55 17.802 3 0.008 0.019 20.681 0.000 0.000 LGA I 56 I 56 18.589 3 0.133 0.143 20.803 0.000 0.000 LGA Q 57 Q 57 17.351 4 0.143 0.149 21.248 0.000 0.000 LGA M 58 M 58 22.160 3 0.025 0.023 26.297 0.000 0.000 LGA L 59 L 59 26.142 3 0.048 0.055 29.213 0.000 0.000 LGA Q 60 Q 60 25.628 4 0.133 0.134 28.558 0.000 0.000 LGA N 61 N 61 27.878 3 0.011 0.023 32.402 0.000 0.000 LGA E 62 E 62 33.431 4 0.133 0.151 37.425 0.000 0.000 LGA L 63 L 63 36.566 3 0.156 0.159 39.247 0.000 0.000 LGA D 64 D 64 36.390 3 0.029 0.029 40.404 0.000 0.000 LGA K 65 K 65 41.780 4 0.099 0.102 46.005 0.000 0.000 LGA Y 66 Y 66 45.389 7 0.032 0.030 47.892 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 417 244 58.51 49 SUMMARY(RMSD_GDC): 14.963 15.101 15.055 28.396 16.549 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 49 49 4.0 21 2.67 35.714 35.729 0.757 LGA_LOCAL RMSD: 2.675 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.900 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 14.963 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.095936 * X + -0.737646 * Y + -0.668337 * Z + -14.495152 Y_new = -0.972183 * X + 0.074696 * Y + -0.221994 * Z + 41.698040 Z_new = 0.213675 * X + 0.671043 * Y + -0.709961 * Z + 14.713803 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.472433 -0.215335 2.384367 [DEG: -84.3642 -12.3378 136.6142 ] ZXZ: -1.250104 2.360239 0.308270 [DEG: -71.6257 135.2317 17.6626 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0605TS444_1-D1 REMARK 2: T0605-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0605TS444_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 49 49 4.0 21 2.67 35.729 14.96 REMARK ---------------------------------------------------------- MOLECULE T0605TS444_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0605 REMARK MODEL 1 REMARK PARENT N/A ATOM 83 N ARG 18 -0.386 33.992 28.314 1.00 1.00 N ATOM 84 CA ARG 18 0.108 34.813 27.227 1.00 1.00 C ATOM 85 C ARG 18 0.264 36.255 27.690 1.00 1.00 C ATOM 86 O ARG 18 1.022 37.019 27.096 1.00 1.00 O ATOM 87 CB ARG 18 -0.880 34.759 26.066 1.00 1.00 C ATOM 88 N GLY 19 -0.456 36.623 28.751 1.00 1.00 N ATOM 89 CA GLY 19 -0.395 37.968 29.289 1.00 1.00 C ATOM 90 C GLY 19 -0.794 38.977 28.221 1.00 1.00 C ATOM 91 O GLY 19 -0.101 39.972 28.016 1.00 1.00 O ATOM 92 N SER 20 -1.913 38.719 27.543 1.00 1.00 N ATOM 93 CA SER 20 -2.399 39.602 26.500 1.00 1.00 C ATOM 94 C SER 20 -3.155 40.769 27.117 1.00 1.00 C ATOM 95 O SER 20 -3.550 41.696 26.413 1.00 1.00 O ATOM 96 CB SER 20 -3.330 38.827 25.575 1.00 1.00 C ATOM 97 N LEU 21 -3.354 40.723 28.437 1.00 1.00 N ATOM 98 CA LEU 21 -4.061 41.774 29.142 1.00 1.00 C ATOM 99 C LEU 21 -3.165 42.995 29.294 1.00 1.00 C ATOM 100 O LEU 21 -3.654 44.121 29.358 1.00 1.00 O ATOM 101 CB LEU 21 -4.468 41.271 30.522 1.00 1.00 C ATOM 102 N ARG 22 -1.851 42.769 29.354 1.00 1.00 N ATOM 103 CA ARG 22 -0.893 43.847 29.500 1.00 1.00 C ATOM 104 C ARG 22 -0.931 44.748 28.273 1.00 1.00 C ATOM 105 O ARG 22 -0.850 45.968 28.396 1.00 1.00 O ATOM 106 CB ARG 22 0.506 43.262 29.653 1.00 1.00 C ATOM 107 N ASP 23 -1.053 44.142 27.090 1.00 1.00 N ATOM 108 CA ASP 23 -1.101 44.888 25.848 1.00 1.00 C ATOM 109 C ASP 23 -2.545 45.095 25.418 1.00 1.00 C ATOM 110 O ASP 23 -2.875 46.115 24.816 1.00 1.00 O ATOM 111 CB ASP 23 -0.356 44.117 24.765 1.00 1.00 C ATOM 112 N LEU 24 -3.407 44.123 25.727 1.00 1.00 N ATOM 113 CA LEU 24 -4.810 44.200 25.373 1.00 1.00 C ATOM 114 C LEU 24 -5.308 45.631 25.518 1.00 1.00 C ATOM 115 O LEU 24 -6.341 45.991 24.958 1.00 1.00 O ATOM 116 CB LEU 24 -5.615 43.289 26.292 1.00 1.00 C ATOM 117 N GLN 25 -4.568 46.448 26.273 1.00 1.00 N ATOM 118 CA GLN 25 -4.935 47.832 26.490 1.00 1.00 C ATOM 119 C GLN 25 -4.535 48.673 25.287 1.00 1.00 C ATOM 120 O GLN 25 -5.184 49.672 24.983 1.00 1.00 O ATOM 121 CB GLN 25 -4.219 48.355 27.732 1.00 1.00 C ATOM 122 N TYR 26 -3.463 48.267 24.603 1.00 1.00 N ATOM 123 CA TYR 26 -2.982 48.982 23.438 1.00 1.00 C ATOM 124 C TYR 26 -3.658 48.452 22.182 1.00 1.00 C ATOM 125 O TYR 26 -3.686 49.132 21.157 1.00 1.00 O ATOM 126 CB TYR 26 -1.472 48.795 23.318 1.00 1.00 C ATOM 127 N ALA 27 -4.202 47.237 22.265 1.00 1.00 N ATOM 128 CA ALA 27 -4.874 46.622 21.137 1.00 1.00 C ATOM 129 C ALA 27 -6.292 47.159 21.017 1.00 1.00 C ATOM 130 O ALA 27 -6.771 47.409 19.913 1.00 1.00 O ATOM 131 CB ALA 27 -4.921 45.110 21.341 1.00 1.00 C ATOM 132 N LEU 28 -6.963 47.338 22.157 1.00 1.00 N ATOM 133 CA LEU 28 -8.320 47.845 22.177 1.00 1.00 C ATOM 134 C LEU 28 -8.557 48.754 20.979 1.00 1.00 C ATOM 135 O LEU 28 -9.565 48.622 20.287 1.00 1.00 O ATOM 136 CB LEU 28 -8.548 48.633 23.462 1.00 1.00 C ATOM 137 N GLN 29 -7.624 49.677 20.737 1.00 1.00 N ATOM 138 CA GLN 29 -7.732 50.602 19.627 1.00 1.00 C ATOM 139 C GLN 29 -7.421 49.889 18.318 1.00 1.00 C ATOM 140 O GLN 29 -8.083 50.122 17.310 1.00 1.00 O ATOM 141 CB GLN 29 -6.746 51.747 19.825 1.00 1.00 C ATOM 142 N GLU 30 -6.410 49.018 18.338 1.00 1.00 N ATOM 143 CA GLU 30 -6.016 48.274 17.158 1.00 1.00 C ATOM 144 C GLU 30 -6.827 46.993 17.052 1.00 1.00 C ATOM 145 O GLU 30 -7.014 46.462 15.959 1.00 1.00 O ATOM 146 CB GLU 30 -4.534 47.927 17.253 1.00 1.00 C ATOM 147 N LYS 31 -7.310 46.493 18.193 1.00 1.00 N ATOM 148 CA LYS 31 -8.097 45.277 18.226 1.00 1.00 C ATOM 149 C LYS 31 -9.573 45.605 18.048 1.00 1.00 C ATOM 150 O LYS 31 -10.338 44.782 17.550 1.00 1.00 O ATOM 151 CB LYS 31 -7.893 44.577 19.565 1.00 1.00 C ATOM 152 N ILE 32 -9.971 46.813 18.455 1.00 1.00 N ATOM 153 CA ILE 32 -11.349 47.245 18.340 1.00 1.00 C ATOM 154 C ILE 32 -11.920 46.820 16.994 1.00 1.00 C ATOM 155 O ILE 32 -13.037 46.315 16.925 1.00 1.00 O ATOM 156 CB ILE 32 -11.415 48.764 18.460 1.00 1.00 C ATOM 157 N GLU 33 -11.147 47.026 15.925 1.00 1.00 N ATOM 158 CA GLU 33 -11.576 46.667 14.589 1.00 1.00 C ATOM 159 C GLU 33 -11.263 45.201 14.317 1.00 1.00 C ATOM 160 O GLU 33 -12.152 44.430 13.963 1.00 1.00 O ATOM 161 CB GLU 33 -10.846 47.536 13.572 1.00 1.00 C ATOM 162 N GLU 34 -9.994 44.820 14.483 1.00 1.00 N ATOM 163 CA GLU 34 -9.570 43.453 14.255 1.00 1.00 C ATOM 164 C GLU 34 -10.214 42.528 15.277 1.00 1.00 C ATOM 165 O GLU 34 -10.381 41.338 15.021 1.00 1.00 O ATOM 166 CB GLU 34 -8.053 43.367 14.381 1.00 1.00 C ATOM 167 N LEU 35 -10.576 43.080 16.439 1.00 1.00 N ATOM 168 CA LEU 35 -11.198 42.305 17.493 1.00 1.00 C ATOM 169 C LEU 35 -12.696 42.195 17.248 1.00 1.00 C ATOM 170 O LEU 35 -13.366 41.363 17.855 1.00 1.00 O ATOM 171 CB LEU 35 -10.955 42.990 18.834 1.00 1.00 C ATOM 172 N ARG 36 -13.218 43.038 16.353 1.00 1.00 N ATOM 173 CA ARG 36 -14.630 43.032 16.029 1.00 1.00 C ATOM 174 C ARG 36 -14.971 41.808 15.192 1.00 1.00 C ATOM 175 O ARG 36 -16.011 41.186 15.394 1.00 1.00 O ATOM 176 CB ARG 36 -14.975 44.293 15.245 1.00 1.00 C ATOM 177 N GLN 37 -14.089 41.464 14.250 1.00 1.00 N ATOM 178 CA GLN 37 -14.298 40.319 13.387 1.00 1.00 C ATOM 179 C GLN 37 -14.047 39.030 14.159 1.00 1.00 C ATOM 180 O GLN 37 -14.928 38.178 14.247 1.00 1.00 O ATOM 181 CB GLN 37 -13.338 40.394 12.204 1.00 1.00 C ATOM 182 N ARG 38 -12.842 38.892 14.715 1.00 1.00 N ATOM 183 CA ARG 38 -12.480 37.712 15.474 1.00 1.00 C ATOM 184 C ARG 38 -13.242 37.683 16.791 1.00 1.00 C ATOM 185 O ARG 38 -13.230 36.676 17.496 1.00 1.00 O ATOM 186 CB ARG 38 -10.981 37.733 15.757 1.00 1.00 C ATOM 187 N ASP 39 -13.907 38.792 17.121 1.00 1.00 N ATOM 188 CA ASP 39 -14.672 38.891 18.349 1.00 1.00 C ATOM 189 C ASP 39 -15.531 37.648 18.530 1.00 1.00 C ATOM 190 O ASP 39 -15.536 37.046 19.602 1.00 1.00 O ATOM 191 CB ASP 39 -15.568 40.122 18.290 1.00 1.00 C ATOM 192 N ALA 40 -16.261 37.267 17.479 1.00 1.00 N ATOM 193 CA ALA 40 -17.120 36.102 17.525 1.00 1.00 C ATOM 194 C ALA 40 -16.333 34.856 17.144 1.00 1.00 C ATOM 195 O ALA 40 -16.567 33.782 17.693 1.00 1.00 O ATOM 196 CB ALA 40 -18.276 36.287 16.548 1.00 1.00 C ATOM 197 N LEU 41 -15.399 35.004 16.203 1.00 1.00 N ATOM 198 CA LEU 41 -14.583 33.895 15.753 1.00 1.00 C ATOM 199 C LEU 41 -13.386 33.717 16.677 1.00 1.00 C ATOM 200 O LEU 41 -12.801 32.638 16.737 1.00 1.00 O ATOM 201 CB LEU 41 -14.091 34.170 14.336 1.00 1.00 C ATOM 202 N ILE 42 -13.025 34.781 17.397 1.00 1.00 N ATOM 203 CA ILE 42 -11.903 34.740 18.313 1.00 1.00 C ATOM 204 C ILE 42 -12.262 33.922 19.545 1.00 1.00 C ATOM 205 O ILE 42 -11.493 33.061 19.966 1.00 1.00 O ATOM 206 CB ILE 42 -11.546 36.162 18.738 1.00 1.00 C ATOM 207 N ASP 43 -13.435 34.195 20.121 1.00 1.00 N ATOM 208 CA ASP 43 -13.892 33.486 21.299 1.00 1.00 C ATOM 209 C ASP 43 -13.830 31.984 21.062 1.00 1.00 C ATOM 210 O ASP 43 -14.123 31.198 21.962 1.00 1.00 O ATOM 211 CB ASP 43 -15.329 33.892 21.607 1.00 1.00 C ATOM 212 N GLU 44 -13.451 31.585 19.845 1.00 1.00 N ATOM 213 CA GLU 44 -13.353 30.184 19.494 1.00 1.00 C ATOM 214 C GLU 44 -12.373 29.479 20.421 1.00 1.00 C ATOM 215 O GLU 44 -12.366 28.254 20.505 1.00 1.00 O ATOM 216 CB GLU 44 -12.867 30.056 18.055 1.00 1.00 C ATOM 217 N LEU 45 -11.543 30.259 21.117 1.00 1.00 N ATOM 218 CA LEU 45 -10.564 29.711 22.035 1.00 1.00 C ATOM 219 C LEU 45 -11.211 28.660 22.923 1.00 1.00 C ATOM 220 O LEU 45 -10.616 27.617 23.189 1.00 1.00 O ATOM 221 CB LEU 45 -10.003 30.833 22.903 1.00 1.00 C ATOM 222 N GLU 46 -12.433 28.936 23.383 1.00 1.00 N ATOM 223 CA GLU 46 -13.156 28.017 24.239 1.00 1.00 C ATOM 224 C GLU 46 -13.873 26.972 23.398 1.00 1.00 C ATOM 225 O GLU 46 -13.980 25.815 23.800 1.00 1.00 O ATOM 226 CB GLU 46 -14.178 28.791 25.064 1.00 1.00 C ATOM 227 N LEU 47 -14.364 27.383 22.226 1.00 1.00 N ATOM 228 CA LEU 47 -15.067 26.484 21.332 1.00 1.00 C ATOM 229 C LEU 47 -14.079 25.557 20.640 1.00 1.00 C ATOM 230 O LEU 47 -14.476 24.551 20.055 1.00 1.00 O ATOM 231 CB LEU 47 -15.819 27.299 20.285 1.00 1.00 C ATOM 232 N GLU 48 -12.791 25.900 20.705 1.00 1.00 N ATOM 233 CA GLU 48 -11.754 25.101 20.085 1.00 1.00 C ATOM 234 C GLU 48 -12.101 23.623 20.186 1.00 1.00 C ATOM 235 O GLU 48 -11.819 22.853 19.270 1.00 1.00 O ATOM 236 CB GLU 48 -10.427 25.358 20.792 1.00 1.00 C ATOM 237 N LEU 49 -12.718 23.228 21.303 1.00 1.00 N ATOM 238 CA LEU 49 -13.101 21.848 21.520 1.00 1.00 C ATOM 239 C LEU 49 -14.193 21.447 20.538 1.00 1.00 C ATOM 240 O LEU 49 -14.250 20.299 20.105 1.00 1.00 O ATOM 241 CB LEU 49 -13.618 21.684 22.945 1.00 1.00 C ATOM 242 N ASP 50 -15.060 22.401 20.188 1.00 1.00 N ATOM 243 CA ASP 50 -16.144 22.145 19.260 1.00 1.00 C ATOM 244 C ASP 50 -16.387 23.370 18.389 1.00 1.00 C ATOM 245 O ASP 50 -16.666 24.451 18.902 1.00 1.00 O ATOM 246 CB ASP 50 -17.412 21.822 20.042 1.00 1.00 C ATOM 247 N GLN 51 -16.283 23.195 17.071 1.00 1.00 N ATOM 248 CA GLN 51 -16.491 24.283 16.135 1.00 1.00 C ATOM 249 C GLN 51 -17.973 24.613 16.038 1.00 1.00 C ATOM 250 O GLN 51 -18.372 25.758 16.241 1.00 1.00 O ATOM 251 CB GLN 51 -15.973 23.874 14.761 1.00 1.00 C ATOM 252 N LYS 52 -18.791 23.604 15.728 1.00 1.00 N ATOM 253 CA LYS 52 -20.223 23.789 15.606 1.00 1.00 C ATOM 254 C LYS 52 -20.752 24.582 16.792 1.00 1.00 C ATOM 255 O LYS 52 -21.637 25.419 16.636 1.00 1.00 O ATOM 256 CB LYS 52 -20.907 22.425 15.564 1.00 1.00 C ATOM 257 N ASP 53 -20.205 24.314 17.981 1.00 1.00 N ATOM 258 CA ASP 53 -20.622 25.001 19.187 1.00 1.00 C ATOM 259 C ASP 53 -21.013 26.436 18.863 1.00 1.00 C ATOM 260 O ASP 53 -21.891 27.001 19.509 1.00 1.00 O ATOM 261 CB ASP 53 -19.473 25.002 20.189 1.00 1.00 C ATOM 262 N GLU 54 -20.356 27.022 17.860 1.00 1.00 N ATOM 263 CA GLU 54 -20.634 28.385 17.455 1.00 1.00 C ATOM 264 C GLU 54 -22.137 28.621 17.414 1.00 1.00 C ATOM 265 O GLU 54 -22.670 29.377 18.224 1.00 1.00 O ATOM 266 CB GLU 54 -20.044 28.632 16.071 1.00 1.00 C ATOM 267 N LEU 55 -22.818 27.971 16.467 1.00 1.00 N ATOM 268 CA LEU 55 -24.254 28.112 16.324 1.00 1.00 C ATOM 269 C LEU 55 -24.949 27.720 17.619 1.00 1.00 C ATOM 270 O LEU 55 -25.842 28.426 18.084 1.00 1.00 O ATOM 271 CB LEU 55 -24.739 27.207 15.198 1.00 1.00 C ATOM 272 N ILE 56 -24.538 26.593 18.203 1.00 1.00 N ATOM 273 CA ILE 56 -25.120 26.112 19.439 1.00 1.00 C ATOM 274 C ILE 56 -24.582 26.912 20.617 1.00 1.00 C ATOM 275 O ILE 56 -25.331 27.631 21.275 1.00 1.00 O ATOM 276 CB ILE 56 -24.765 24.641 19.626 1.00 1.00 C ATOM 277 N GLN 57 -23.279 26.787 20.879 1.00 1.00 N ATOM 278 CA GLN 57 -22.646 27.496 21.973 1.00 1.00 C ATOM 279 C GLN 57 -22.852 28.996 21.811 1.00 1.00 C ATOM 280 O GLN 57 -22.747 29.745 22.780 1.00 1.00 O ATOM 281 CB GLN 57 -21.153 27.188 21.979 1.00 1.00 C ATOM 282 N MET 58 -23.143 29.430 20.583 1.00 1.00 N ATOM 283 CA MET 58 -23.361 30.835 20.300 1.00 1.00 C ATOM 284 C MET 58 -24.256 31.451 21.365 1.00 1.00 C ATOM 285 O MET 58 -24.056 32.598 21.758 1.00 1.00 O ATOM 286 CB MET 58 -24.026 30.977 18.935 1.00 1.00 C ATOM 287 N LEU 59 -25.245 30.684 21.831 1.00 1.00 N ATOM 288 CA LEU 59 -26.166 31.156 22.846 1.00 1.00 C ATOM 289 C LEU 59 -25.397 31.611 24.078 1.00 1.00 C ATOM 290 O LEU 59 -25.597 32.723 24.560 1.00 1.00 O ATOM 291 CB LEU 59 -27.115 30.026 23.230 1.00 1.00 C ATOM 292 N GLN 60 -24.517 30.745 24.586 1.00 1.00 N ATOM 293 CA GLN 60 -23.723 31.060 25.758 1.00 1.00 C ATOM 294 C GLN 60 -22.750 32.188 25.443 1.00 1.00 C ATOM 295 O GLN 60 -22.271 32.866 26.349 1.00 1.00 O ATOM 296 CB GLN 60 -22.940 29.823 26.185 1.00 1.00 C ATOM 297 N ASN 61 -22.462 32.387 24.155 1.00 1.00 N ATOM 298 CA ASN 61 -21.552 33.430 23.727 1.00 1.00 C ATOM 299 C ASN 61 -22.218 34.792 23.857 1.00 1.00 C ATOM 300 O ASN 61 -21.588 35.752 24.298 1.00 1.00 O ATOM 301 CB ASN 61 -21.166 33.195 22.269 1.00 1.00 C ATOM 302 N GLU 62 -23.493 34.873 23.474 1.00 1.00 N ATOM 303 CA GLU 62 -24.238 36.114 23.550 1.00 1.00 C ATOM 304 C GLU 62 -23.440 37.157 24.319 1.00 1.00 C ATOM 305 O GLU 62 -22.969 38.132 23.740 1.00 1.00 O ATOM 306 CB GLU 62 -25.565 35.866 24.260 1.00 1.00 C ATOM 307 N LEU 63 -23.293 36.947 25.630 1.00 1.00 N ATOM 308 CA LEU 63 -22.554 37.867 26.472 1.00 1.00 C ATOM 309 C LEU 63 -21.216 38.202 25.834 1.00 1.00 C ATOM 310 O LEU 63 -20.558 39.160 26.234 1.00 1.00 O ATOM 311 CB LEU 63 -22.317 37.223 27.834 1.00 1.00 C ATOM 312 N ASP 64 -20.812 37.409 24.838 1.00 1.00 N ATOM 313 CA ASP 64 -19.556 37.623 24.148 1.00 1.00 C ATOM 314 C ASP 64 -19.470 39.059 23.650 1.00 1.00 C ATOM 315 O ASP 64 -18.377 39.577 23.431 1.00 1.00 O ATOM 316 CB ASP 64 -19.460 36.669 22.963 1.00 1.00 C ATOM 317 N LYS 65 -20.628 39.699 23.470 1.00 1.00 N ATOM 318 CA LYS 65 -20.681 41.067 22.999 1.00 1.00 C ATOM 319 C LYS 65 -20.165 42.011 24.076 1.00 1.00 C ATOM 320 O LYS 65 -19.572 43.043 23.767 1.00 1.00 O ATOM 321 CB LYS 65 -22.124 41.429 22.660 1.00 1.00 C ATOM 322 N TYR 66 -20.393 41.655 25.343 1.00 1.00 N ATOM 323 CA TYR 66 -19.954 42.467 26.458 1.00 1.00 C ATOM 324 C TYR 66 -18.446 42.346 26.630 1.00 1.00 C ATOM 325 O TYR 66 -17.773 43.331 26.929 1.00 1.00 O ATOM 326 CB TYR 66 -20.647 41.998 27.732 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 244 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 29.36 88.5 96 100.0 96 ARMSMC SECONDARY STRUCTURE . . 26.40 90.2 92 100.0 92 ARMSMC SURFACE . . . . . . . . 29.36 88.5 96 100.0 96 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 14.96 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 14.96 49 100.0 49 CRMSCA CRN = ALL/NP . . . . . 0.3054 CRMSCA SECONDARY STRUCTURE . . 13.43 46 100.0 46 CRMSCA SURFACE . . . . . . . . 14.96 49 100.0 49 CRMSCA BURIED . . . . . . . . 0.00 0 0.0 0 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.06 244 100.0 244 CRMSMC SECONDARY STRUCTURE . . 13.63 230 100.0 230 CRMSMC SURFACE . . . . . . . . 15.06 244 100.0 244 CRMSMC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 14.84 48 21.7 221 CRMSSC RELIABLE SIDE CHAINS . 14.84 48 25.9 185 CRMSSC SECONDARY STRUCTURE . . 13.55 46 22.3 206 CRMSSC SURFACE . . . . . . . . 14.84 48 21.7 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.06 244 58.5 417 CRMSALL SECONDARY STRUCTURE . . 13.63 230 59.0 390 CRMSALL SURFACE . . . . . . . . 15.06 244 58.5 417 CRMSALL BURIED . . . . . . . . 0.00 0 0.0 0 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.883 0.819 0.409 49 100.0 49 ERRCA SECONDARY STRUCTURE . . 10.807 0.811 0.406 46 100.0 46 ERRCA SURFACE . . . . . . . . 11.883 0.819 0.409 49 100.0 49 ERRCA BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.906 0.818 0.409 244 100.0 244 ERRMC SECONDARY STRUCTURE . . 10.903 0.811 0.406 230 100.0 230 ERRMC SURFACE . . . . . . . . 11.906 0.818 0.409 244 100.0 244 ERRMC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.895 0.821 0.411 48 21.7 221 ERRSC RELIABLE SIDE CHAINS . 11.895 0.821 0.411 48 25.9 185 ERRSC SECONDARY STRUCTURE . . 11.045 0.816 0.408 46 22.3 206 ERRSC SURFACE . . . . . . . . 11.895 0.821 0.411 48 21.7 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.906 0.818 0.409 244 58.5 417 ERRALL SECONDARY STRUCTURE . . 10.903 0.811 0.406 230 59.0 390 ERRALL SURFACE . . . . . . . . 11.906 0.818 0.409 244 58.5 417 ERRALL BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 3 25 49 49 DISTCA CA (P) 0.00 0.00 0.00 6.12 51.02 49 DISTCA CA (RMS) 0.00 0.00 0.00 4.68 7.84 DISTCA ALL (N) 0 0 0 12 119 244 417 DISTALL ALL (P) 0.00 0.00 0.00 2.88 28.54 417 DISTALL ALL (RMS) 0.00 0.00 0.00 4.37 7.70 DISTALL END of the results output