####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 49 ( 244), selected 49 , name T0605TS373_1-D1 # Molecule2: number of CA atoms 49 ( 417), selected 49 , name T0605-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0605TS373_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 30 - 52 4.78 21.98 LONGEST_CONTINUOUS_SEGMENT: 23 31 - 53 4.78 22.11 LCS_AVERAGE: 45.44 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 48 - 66 1.67 35.23 LCS_AVERAGE: 28.86 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 49 - 66 0.99 35.52 LCS_AVERAGE: 24.74 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 18 R 18 9 15 21 0 3 7 10 13 14 15 15 15 15 17 17 18 18 19 19 20 20 21 21 LCS_GDT G 19 G 19 12 15 21 6 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 21 21 LCS_GDT S 20 S 20 12 15 21 4 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 21 21 LCS_GDT L 21 L 21 12 15 21 6 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 21 21 LCS_GDT R 22 R 22 12 15 21 6 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 21 21 LCS_GDT D 23 D 23 12 15 21 6 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 21 21 LCS_GDT L 24 L 24 12 15 21 6 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 21 21 LCS_GDT Q 25 Q 25 12 15 21 5 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 21 21 LCS_GDT Y 26 Y 26 12 15 21 6 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 20 23 23 LCS_GDT A 27 A 27 12 15 21 5 10 12 13 13 14 15 15 16 16 17 17 19 19 19 20 20 22 23 24 LCS_GDT L 28 L 28 12 15 21 5 9 12 13 13 14 15 15 16 16 17 17 19 19 19 21 22 24 24 25 LCS_GDT Q 29 Q 29 12 15 22 5 10 12 13 13 14 15 15 16 16 17 17 19 19 20 21 22 24 24 25 LCS_GDT E 30 E 30 12 15 23 3 8 12 13 13 14 15 15 16 16 17 18 19 20 20 22 23 24 24 25 LCS_GDT K 31 K 31 12 15 23 6 8 11 13 13 14 15 15 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT I 32 I 32 9 15 23 6 8 8 12 13 14 15 15 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT E 33 E 33 9 10 23 6 8 8 9 9 12 14 15 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT E 34 E 34 9 10 23 6 8 8 9 9 12 14 15 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT L 35 L 35 9 10 23 6 8 8 9 9 12 14 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT R 36 R 36 9 10 23 6 8 8 9 9 12 14 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT Q 37 Q 37 9 10 23 3 8 8 9 9 10 12 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT R 38 R 38 9 10 23 3 8 8 9 9 10 11 13 14 16 18 19 20 21 22 22 23 24 24 25 LCS_GDT D 39 D 39 9 10 23 3 3 6 9 9 10 11 13 15 16 18 19 20 21 22 22 23 24 24 25 LCS_GDT A 40 A 40 4 4 23 3 4 5 8 9 12 14 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT L 41 L 41 4 5 23 3 4 4 4 6 9 11 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT I 42 I 42 4 5 23 3 4 5 8 9 12 14 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT D 43 D 43 4 5 23 3 4 5 6 7 9 14 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT E 44 E 44 4 5 23 3 4 5 6 7 12 14 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT L 45 L 45 4 5 23 3 4 5 5 8 11 14 14 16 17 18 19 20 21 22 22 23 24 24 25 LCS_GDT E 46 E 46 3 4 23 3 3 3 4 4 8 9 12 15 17 18 19 19 21 22 22 23 24 24 25 LCS_GDT L 47 L 47 3 4 23 3 3 3 4 4 6 9 11 14 15 18 19 20 21 22 22 23 24 24 25 LCS_GDT E 48 E 48 3 19 23 3 4 4 6 8 12 17 19 19 19 19 19 20 21 22 22 23 24 24 25 LCS_GDT L 49 L 49 18 19 23 7 13 16 18 18 18 18 19 19 19 19 19 20 21 22 22 23 24 24 25 LCS_GDT D 50 D 50 18 19 23 7 13 16 18 18 18 18 19 19 19 19 19 20 21 22 22 23 24 24 25 LCS_GDT Q 51 Q 51 18 19 23 7 14 16 18 18 18 18 19 19 19 19 19 20 21 22 22 23 24 24 25 LCS_GDT K 52 K 52 18 19 23 7 14 16 18 18 18 18 19 19 19 19 19 20 21 22 22 23 24 24 25 LCS_GDT D 53 D 53 18 19 23 7 14 16 18 18 18 18 19 19 19 19 19 20 20 21 22 23 24 24 25 LCS_GDT E 54 E 54 18 19 22 7 14 16 18 18 18 18 19 19 19 19 19 20 20 21 22 22 23 24 25 LCS_GDT L 55 L 55 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 24 LCS_GDT I 56 I 56 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT Q 57 Q 57 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT M 58 M 58 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT L 59 L 59 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT Q 60 Q 60 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT N 61 N 61 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT E 62 E 62 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT L 63 L 63 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT D 64 D 64 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT K 65 K 65 18 19 22 8 14 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_GDT Y 66 Y 66 18 19 22 5 11 16 18 18 18 18 19 19 19 19 19 20 20 20 20 21 22 22 23 LCS_AVERAGE LCS_A: 33.01 ( 24.74 28.86 45.44 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 14 16 18 18 18 18 19 19 19 19 19 20 21 22 22 23 24 24 25 GDT PERCENT_AT 16.33 28.57 32.65 36.73 36.73 36.73 36.73 38.78 38.78 38.78 38.78 38.78 40.82 42.86 44.90 44.90 46.94 48.98 48.98 51.02 GDT RMS_LOCAL 0.23 0.63 0.72 0.99 0.99 0.99 0.99 1.67 1.67 1.67 1.67 1.67 2.74 4.15 4.38 4.38 4.78 5.09 5.09 5.49 GDT RMS_ALL_AT 36.17 35.74 35.77 35.52 35.52 35.52 35.52 35.23 35.23 35.23 35.23 35.23 34.69 22.17 22.31 22.31 21.98 21.83 21.83 21.74 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 18 R 18 61.868 6 0.594 0.601 63.741 0.000 0.000 LGA G 19 G 19 58.925 0 0.133 0.133 59.364 0.000 0.000 LGA S 20 S 20 55.405 1 0.061 0.068 56.730 0.000 0.000 LGA L 21 L 21 55.615 3 0.081 0.092 56.579 0.000 0.000 LGA R 22 R 22 57.867 6 0.021 0.036 58.911 0.000 0.000 LGA D 23 D 23 54.689 3 0.040 0.052 55.847 0.000 0.000 LGA L 24 L 24 52.814 3 0.036 0.043 53.631 0.000 0.000 LGA Q 25 Q 25 55.906 4 0.042 0.057 57.477 0.000 0.000 LGA Y 26 Y 26 55.398 7 0.026 0.040 55.577 0.000 0.000 LGA A 27 A 27 51.523 0 0.028 0.043 52.957 0.000 0.000 LGA L 28 L 28 52.756 3 0.028 0.043 53.700 0.000 0.000 LGA Q 29 Q 29 55.365 4 0.013 0.055 56.358 0.000 0.000 LGA E 30 E 30 52.752 4 0.021 0.027 53.632 0.000 0.000 LGA K 31 K 31 51.151 4 0.550 0.519 51.783 0.000 0.000 LGA I 32 I 32 51.224 3 0.037 0.055 53.687 0.000 0.000 LGA E 33 E 33 51.072 4 0.045 0.062 53.190 0.000 0.000 LGA E 34 E 34 45.402 4 0.035 0.048 47.859 0.000 0.000 LGA L 35 L 35 41.718 3 0.017 0.038 43.606 0.000 0.000 LGA R 36 R 36 42.819 6 0.028 0.037 45.573 0.000 0.000 LGA Q 37 Q 37 40.346 4 0.058 0.066 41.570 0.000 0.000 LGA R 38 R 38 33.803 6 0.601 0.588 36.503 0.000 0.000 LGA D 39 D 39 30.954 3 0.044 0.055 32.170 0.000 0.000 LGA A 40 A 40 29.381 0 0.633 0.613 30.264 0.000 0.000 LGA L 41 L 41 28.226 3 0.032 0.049 29.133 0.000 0.000 LGA I 42 I 42 22.962 3 0.570 0.563 25.073 0.000 0.000 LGA D 43 D 43 20.915 3 0.068 0.068 22.787 0.000 0.000 LGA E 44 E 44 16.850 4 0.609 0.583 18.840 0.000 0.000 LGA L 45 L 45 15.264 3 0.029 0.039 15.756 0.000 0.000 LGA E 46 E 46 14.404 4 0.202 0.221 16.715 0.000 0.000 LGA L 47 L 47 10.649 3 0.601 0.593 12.174 2.976 1.488 LGA E 48 E 48 5.299 4 0.567 0.519 6.990 36.667 18.677 LGA L 49 L 49 2.253 3 0.620 0.603 5.149 68.810 37.679 LGA D 50 D 50 1.152 3 0.076 0.071 1.614 81.429 49.821 LGA Q 51 Q 51 1.531 4 0.053 0.068 1.947 77.262 42.434 LGA K 52 K 52 1.587 4 0.030 0.037 1.773 79.286 43.333 LGA D 53 D 53 0.621 3 0.052 0.074 0.825 92.857 57.738 LGA E 54 E 54 1.335 4 0.031 0.056 1.566 81.548 45.291 LGA L 55 L 55 1.617 3 0.034 0.044 1.776 79.286 48.750 LGA I 56 I 56 0.856 3 0.009 0.037 1.111 90.595 56.607 LGA Q 57 Q 57 0.555 4 0.031 0.040 0.672 90.476 50.265 LGA M 58 M 58 0.834 3 0.020 0.043 0.834 90.476 56.548 LGA L 59 L 59 0.626 3 0.029 0.036 0.803 92.857 57.738 LGA Q 60 Q 60 0.599 4 0.033 0.034 0.939 95.238 52.381 LGA N 61 N 61 0.673 3 0.030 0.056 0.929 90.476 56.548 LGA E 62 E 62 0.469 4 0.030 0.042 0.715 97.619 53.439 LGA L 63 L 63 0.355 3 0.039 0.052 0.750 97.619 60.119 LGA D 64 D 64 0.654 3 0.067 0.082 1.300 90.595 55.476 LGA K 65 K 65 1.464 4 0.063 0.068 1.992 77.143 42.381 LGA Y 66 Y 66 1.739 7 0.039 0.042 2.095 77.143 31.111 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 417 244 58.51 49 SUMMARY(RMSD_GDC): 19.930 19.948 19.938 32.456 18.731 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 49 49 4.0 19 1.67 37.245 35.170 1.073 LGA_LOCAL RMSD: 1.670 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 35.225 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 19.930 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.260224 * X + 0.076780 * Y + -0.962491 * Z + -138.177414 Y_new = -0.426006 * X + -0.885434 * Y + -0.185810 * Z + 70.600815 Z_new = -0.866488 * X + 0.458380 * Y + -0.197702 * Z + -14.394463 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.022441 1.048124 1.977997 [DEG: -58.5815 60.0531 113.3309 ] ZXZ: -1.380091 1.769810 -1.084212 [DEG: -79.0734 101.4026 -62.1208 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0605TS373_1-D1 REMARK 2: T0605-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0605TS373_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 49 49 4.0 19 1.67 35.170 19.93 REMARK ---------------------------------------------------------- MOLECULE T0605TS373_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0605 REMARK MODEL 1 REMARK PARENT N/A ATOM 82 N ARG 18 -19.699 9.942 17.150 1.00 0.00 N ATOM 83 CA ARG 18 -19.494 8.570 16.668 1.00 0.00 C ATOM 84 C ARG 18 -19.059 8.649 15.202 1.00 0.00 C ATOM 85 O ARG 18 -19.826 9.036 14.310 1.00 0.00 O ATOM 86 CB ARG 18 -20.849 7.842 16.740 1.00 0.00 C ATOM 87 N GLY 19 -17.814 8.271 14.990 1.00 0.00 N ATOM 88 CA GLY 19 -17.192 8.267 13.658 1.00 0.00 C ATOM 89 C GLY 19 -15.693 8.006 13.818 1.00 0.00 C ATOM 90 O GLY 19 -15.240 6.864 13.983 1.00 0.00 O ATOM 91 N SER 20 -14.949 9.095 13.766 1.00 0.00 N ATOM 92 CA SER 20 -13.485 9.072 13.899 1.00 0.00 C ATOM 93 C SER 20 -13.213 8.563 15.315 1.00 0.00 C ATOM 94 O SER 20 -12.188 7.926 15.600 1.00 0.00 O ATOM 95 CB SER 20 -12.931 10.504 13.775 1.00 0.00 C ATOM 96 N LEU 21 -14.161 8.864 16.186 1.00 0.00 N ATOM 97 CA LEU 21 -14.102 8.472 17.601 1.00 0.00 C ATOM 98 C LEU 21 -13.977 6.948 17.639 1.00 0.00 C ATOM 99 O LEU 21 -13.257 6.368 18.467 1.00 0.00 O ATOM 100 CB LEU 21 -15.407 8.891 18.303 1.00 0.00 1 ATOM 101 N ARG 22 -14.697 6.327 16.722 1.00 0.00 1 ATOM 102 CA ARG 22 -14.725 4.864 16.581 1.00 0.00 1 ATOM 103 C ARG 22 -13.301 4.346 16.366 1.00 0.00 1 ATOM 104 O ARG 22 -12.890 3.312 16.913 1.00 0.00 1 ATOM 105 CB ARG 22 -15.509 4.532 15.299 1.00 0.00 1 ATOM 106 N ASP 23 -12.573 5.094 15.557 1.00 0.00 1 ATOM 107 CA ASP 23 -11.178 4.780 15.213 1.00 0.00 1 ATOM 108 C ASP 23 -10.389 4.771 16.524 1.00 0.00 1 ATOM 109 O ASP 23 -9.498 3.937 16.749 1.00 0.00 1 ATOM 110 CB ASP 23 -10.627 5.904 14.316 1.00 0.00 1 ATOM 111 N LEU 24 -10.746 5.720 17.371 1.00 0.00 1 ATOM 112 CA LEU 24 -10.117 5.892 18.690 1.00 0.00 1 ATOM 113 C LEU 24 -10.339 4.611 19.497 1.00 0.00 1 ATOM 114 O LEU 24 -9.455 4.133 20.224 1.00 0.00 1 ATOM 115 CB LEU 24 -10.863 7.037 19.403 1.00 0.00 1 ATOM 116 N GLN 25 -11.539 4.080 19.344 1.00 0.00 1 ATOM 117 CA GLN 25 -11.962 2.849 20.027 1.00 0.00 1 ATOM 118 C GLN 25 -11.001 1.733 19.610 1.00 0.00 1 ATOM 119 O GLN 25 -10.588 0.886 20.417 1.00 0.00 1 ATOM 120 CB GLN 25 -13.383 2.492 19.550 1.00 0.00 1 ATOM 121 N TYR 26 -10.662 1.766 18.334 1.00 0.00 1 ATOM 122 CA TYR 26 -9.749 0.788 17.722 1.00 0.00 1 ATOM 123 C TYR 26 -8.418 0.886 18.473 1.00 0.00 1 ATOM 124 O TYR 26 -7.757 -0.121 18.768 1.00 0.00 1 ATOM 125 CB TYR 26 -9.513 1.176 16.250 1.00 0.00 1 ATOM 126 N ALA 27 -8.056 2.122 18.767 1.00 0.00 1 ATOM 127 CA ALA 27 -6.814 2.443 19.485 1.00 0.00 1 ATOM 128 C ALA 27 -6.884 1.710 20.828 1.00 0.00 1 ATOM 129 O ALA 27 -5.896 1.142 21.321 1.00 0.00 1 ATOM 130 CB ALA 27 -6.829 3.955 19.775 1.00 0.00 1 ATOM 131 N LEU 28 -8.076 1.745 21.396 1.00 0.00 1 ATOM 132 CA LEU 28 -8.365 1.105 22.687 1.00 0.00 1 ATOM 133 C LEU 28 -8.029 -0.381 22.567 1.00 0.00 1 ATOM 134 O LEU 28 -7.507 -1.011 23.493 1.00 0.00 1 ATOM 135 CB LEU 28 -9.865 1.315 22.967 1.00 0.00 1 ATOM 136 N GLN 29 -8.344 -0.913 21.404 1.00 0.00 1 ATOM 137 CA GLN 29 -8.107 -2.326 21.076 1.00 0.00 1 ATOM 138 C GLN 29 -6.670 -2.760 21.376 1.00 0.00 1 ATOM 139 O GLN 29 -6.407 -3.871 21.859 1.00 0.00 1 ATOM 140 CB GLN 29 -8.352 -2.480 19.563 1.00 0.00 1 ATOM 141 N GLU 30 -5.762 -1.854 21.074 1.00 0.00 1 ATOM 142 CA GLU 30 -4.321 -2.065 21.280 1.00 0.00 1 ATOM 143 C GLU 30 -3.975 -2.391 22.734 1.00 0.00 1 ATOM 144 O GLU 30 -3.159 -3.275 23.033 1.00 0.00 1 ATOM 145 CB GLU 30 -3.587 -0.762 20.912 1.00 0.00 1 ATOM 146 N LYS 31 -4.622 -1.653 23.619 1.00 0.00 1 ATOM 147 CA LYS 31 -4.439 -1.801 25.070 1.00 0.00 1 ATOM 148 C LYS 31 -5.669 -1.301 25.829 1.00 0.00 1 ATOM 149 O LYS 31 -5.730 -0.156 26.299 1.00 0.00 1 ATOM 150 CB LYS 31 -3.221 -0.937 25.445 1.00 0.00 1 ATOM 151 N ILE 32 -6.639 -2.190 25.932 1.00 0.00 1 ATOM 152 CA ILE 32 -7.908 -1.918 26.620 1.00 0.00 1 ATOM 153 C ILE 32 -7.730 -1.485 28.077 1.00 0.00 1 ATOM 154 O ILE 32 -8.371 -0.543 28.566 1.00 0.00 1 ATOM 155 CB ILE 32 -8.680 -3.251 26.645 1.00 0.00 1 ATOM 156 N GLU 33 -6.844 -2.199 28.746 1.00 0.00 1 ATOM 157 CA GLU 33 -6.517 -1.955 30.158 1.00 0.00 1 ATOM 158 C GLU 33 -5.991 -0.527 30.321 1.00 0.00 1 ATOM 159 O GLU 33 -6.341 0.199 31.264 1.00 0.00 1 ATOM 160 CB GLU 33 -5.413 -2.940 30.581 1.00 0.00 1 ATOM 161 N GLU 34 -5.147 -0.155 29.377 1.00 0.00 1 ATOM 162 CA GLU 34 -4.521 1.175 29.340 1.00 0.00 1 ATOM 163 C GLU 34 -5.609 2.246 29.226 1.00 0.00 1 ATOM 164 O GLU 34 -5.553 3.311 29.860 1.00 0.00 1 ATOM 165 CB GLU 34 -3.630 1.279 28.089 1.00 0.00 1 ATOM 166 N LEU 35 -6.590 1.927 28.403 1.00 0.00 1 ATOM 167 CA LEU 35 -7.736 2.811 28.146 1.00 0.00 1 ATOM 168 C LEU 35 -8.456 3.161 29.448 1.00 0.00 1 ATOM 169 O LEU 35 -8.895 4.295 29.670 1.00 0.00 1 ATOM 170 CB LEU 35 -8.727 2.049 27.247 1.00 0.00 1 ATOM 171 N ARG 36 -8.560 2.158 30.294 1.00 0.00 1 ATOM 172 CA ARG 36 -9.215 2.276 31.604 1.00 0.00 1 ATOM 173 C ARG 36 -8.591 3.369 32.475 1.00 0.00 1 ATOM 174 O ARG 36 -9.277 4.103 33.198 1.00 0.00 1 ATOM 175 CB ARG 36 -9.006 0.944 32.349 1.00 0.00 1 ATOM 176 N GLN 37 -7.280 3.448 32.380 1.00 0.00 1 ATOM 177 CA GLN 37 -6.479 4.427 33.129 1.00 0.00 1 ATOM 178 C GLN 37 -6.833 5.909 32.989 1.00 0.00 1 ATOM 179 O GLN 37 -6.827 6.677 33.958 1.00 0.00 1 ATOM 180 CB GLN 37 -5.051 4.281 32.572 1.00 0.00 1 ATOM 181 N ARG 38 -7.136 6.276 31.761 1.00 0.00 1 ATOM 182 CA ARG 38 -7.505 7.654 31.403 1.00 0.00 1 ATOM 183 C ARG 38 -8.998 7.939 31.577 1.00 0.00 1 ATOM 184 O ARG 38 -9.851 7.057 31.439 1.00 0.00 1 ATOM 185 CB ARG 38 -7.182 7.852 29.910 1.00 0.00 1 ATOM 186 N ASP 39 -9.279 9.190 31.882 1.00 0.00 1 ATOM 187 CA ASP 39 -10.649 9.679 32.093 1.00 0.00 1 ATOM 188 C ASP 39 -11.386 9.357 30.790 1.00 0.00 1 ATOM 189 O ASP 39 -12.569 8.968 30.778 1.00 0.00 1 ATOM 190 CB ASP 39 -10.613 11.205 32.305 1.00 0.00 1 ATOM 191 N ALA 40 -10.650 9.530 29.705 1.00 0.00 1 ATOM 192 CA ALA 40 -11.159 9.278 28.348 1.00 0.00 1 ATOM 193 C ALA 40 -9.950 8.800 27.540 1.00 0.00 1 ATOM 194 O ALA 40 -8.809 9.240 27.740 1.00 0.00 1 ATOM 195 CB ALA 40 -11.704 10.588 27.751 1.00 0.00 1 ATOM 196 N LEU 41 -10.240 7.891 26.628 1.00 0.00 1 ATOM 197 CA LEU 41 -9.229 7.297 25.740 1.00 0.00 1 ATOM 198 C LEU 41 -8.496 8.417 24.999 1.00 0.00 1 ATOM 199 O LEU 41 -7.278 8.363 24.766 1.00 0.00 1 ATOM 200 CB LEU 41 -9.905 6.442 24.653 1.00 0.00 2 ATOM 201 N ILE 42 -9.275 9.424 24.642 1.00 0.00 2 ATOM 202 CA ILE 42 -8.776 10.603 23.921 1.00 0.00 2 ATOM 203 C ILE 42 -9.078 11.897 24.682 1.00 0.00 2 ATOM 204 O ILE 42 -10.186 12.443 24.630 1.00 0.00 2 ATOM 205 CB ILE 42 -9.591 10.684 22.616 1.00 0.00 2 ATOM 206 N ASP 43 -8.060 12.363 25.382 1.00 0.00 2 ATOM 207 CA ASP 43 -8.133 13.592 26.187 1.00 0.00 2 ATOM 208 C ASP 43 -8.475 14.663 25.146 1.00 0.00 2 ATOM 209 O ASP 43 -9.258 15.599 25.393 1.00 0.00 2 ATOM 210 CB ASP 43 -6.744 13.882 26.787 1.00 0.00 2 ATOM 211 N GLU 44 -7.864 14.494 23.986 1.00 0.00 2 ATOM 212 CA GLU 44 -8.050 15.406 22.847 1.00 0.00 2 ATOM 213 C GLU 44 -8.009 14.391 21.705 1.00 0.00 2 ATOM 214 O GLU 44 -6.943 13.915 21.283 1.00 0.00 2 ATOM 215 CB GLU 44 -6.832 16.344 22.742 1.00 0.00 2 ATOM 216 N LEU 45 -9.199 14.078 21.224 1.00 0.00 2 ATOM 217 CA LEU 45 -9.391 13.121 20.124 1.00 0.00 2 ATOM 218 C LEU 45 -8.548 13.540 18.918 1.00 0.00 2 ATOM 219 O LEU 45 -7.962 12.709 18.207 1.00 0.00 2 ATOM 220 CB LEU 45 -10.884 13.064 19.753 1.00 0.00 2 ATOM 221 N GLU 46 -8.509 14.846 18.718 1.00 0.00 2 ATOM 222 CA GLU 46 -7.759 15.463 17.616 1.00 0.00 2 ATOM 223 C GLU 46 -7.987 16.976 17.575 1.00 0.00 2 ATOM 224 O GLU 46 -7.119 17.781 17.937 1.00 0.00 2 ATOM 225 CB GLU 46 -8.253 14.848 16.293 1.00 0.00 2 ATOM 226 N LEU 47 -9.175 17.329 17.124 1.00 0.00 2 ATOM 227 CA LEU 47 -9.605 18.729 17.002 1.00 0.00 2 ATOM 228 C LEU 47 -9.883 19.317 18.387 1.00 0.00 2 ATOM 229 O LEU 47 -10.564 18.717 19.229 1.00 0.00 2 ATOM 230 CB LEU 47 -10.935 18.740 16.227 1.00 0.00 2 ATOM 231 N GLU 48 -9.339 20.501 18.589 1.00 0.00 2 ATOM 232 CA GLU 48 -9.481 21.245 19.849 1.00 0.00 2 ATOM 233 C GLU 48 -10.677 22.182 19.666 1.00 0.00 2 ATOM 234 O GLU 48 -10.555 23.311 19.170 1.00 0.00 2 ATOM 235 CB GLU 48 -8.214 22.093 20.064 1.00 0.00 2 ATOM 236 N LEU 49 -11.825 21.677 20.078 1.00 0.00 2 ATOM 237 CA LEU 49 -13.099 22.407 19.994 1.00 0.00 2 ATOM 238 C LEU 49 -13.931 22.029 21.220 1.00 0.00 2 ATOM 239 O LEU 49 -13.899 20.892 21.709 1.00 0.00 2 ATOM 240 CB LEU 49 -13.845 21.939 18.732 1.00 0.00 2 ATOM 241 N ASP 50 -14.670 23.013 21.694 1.00 0.00 2 ATOM 242 CA ASP 50 -15.547 22.867 22.866 1.00 0.00 2 ATOM 243 C ASP 50 -16.513 21.713 22.591 1.00 0.00 2 ATOM 244 O ASP 50 -17.026 21.051 23.507 1.00 0.00 2 ATOM 245 CB ASP 50 -16.386 24.149 23.007 1.00 0.00 2 ATOM 246 N GLN 51 -16.741 21.499 21.309 1.00 0.00 2 ATOM 247 CA GLN 51 -17.638 20.439 20.822 1.00 0.00 2 ATOM 248 C GLN 51 -16.818 19.148 20.806 1.00 0.00 2 ATOM 249 O GLN 51 -17.323 18.047 21.067 1.00 0.00 2 ATOM 250 CB GLN 51 -18.043 20.774 19.373 1.00 0.00 2 ATOM 251 N LYS 52 -15.549 19.321 20.493 1.00 0.00 2 ATOM 252 CA LYS 52 -14.583 18.215 20.420 1.00 0.00 2 ATOM 253 C LYS 52 -14.526 17.495 21.769 1.00 0.00 2 ATOM 254 O LYS 52 -14.439 16.261 21.853 1.00 0.00 2 ATOM 255 CB LYS 52 -13.192 18.825 20.173 1.00 0.00 2 ATOM 256 N ASP 53 -14.578 18.303 22.810 1.00 0.00 2 ATOM 257 CA ASP 53 -14.537 17.823 24.200 1.00 0.00 2 ATOM 258 C ASP 53 -15.676 16.842 24.486 1.00 0.00 2 ATOM 259 O ASP 53 -15.500 15.804 25.139 1.00 0.00 2 ATOM 260 CB ASP 53 -14.771 19.043 25.111 1.00 0.00 2 ATOM 261 N GLU 54 -16.839 17.205 23.977 1.00 0.00 2 ATOM 262 CA GLU 54 -18.065 16.409 24.131 1.00 0.00 2 ATOM 263 C GLU 54 -17.848 15.040 23.484 1.00 0.00 2 ATOM 264 O GLU 54 -18.251 13.991 24.010 1.00 0.00 2 ATOM 265 CB GLU 54 -19.181 17.116 23.341 1.00 0.00 2 ATOM 266 N LEU 55 -17.202 15.087 22.333 1.00 0.00 2 ATOM 267 CA LEU 55 -16.887 13.890 21.541 1.00 0.00 2 ATOM 268 C LEU 55 -16.012 12.936 22.358 1.00 0.00 2 ATOM 269 O LEU 55 -16.173 11.708 22.328 1.00 0.00 2 ATOM 270 CB LEU 55 -16.035 14.332 20.337 1.00 0.00 2 ATOM 271 N ILE 56 -15.090 13.541 23.083 1.00 0.00 2 ATOM 272 CA ILE 56 -14.142 12.816 23.943 1.00 0.00 2 ATOM 273 C ILE 56 -14.897 11.960 24.962 1.00 0.00 2 ATOM 274 O ILE 56 -14.517 10.822 25.273 1.00 0.00 2 ATOM 275 CB ILE 56 -13.349 13.878 24.726 1.00 0.00 2 ATOM 276 N GLN 57 -15.968 12.544 25.466 1.00 0.00 2 ATOM 277 CA GLN 57 -16.838 11.899 26.461 1.00 0.00 2 ATOM 278 C GLN 57 -17.448 10.626 25.872 1.00 0.00 2 ATOM 279 O GLN 57 -17.524 9.572 26.522 1.00 0.00 2 ATOM 280 CB GLN 57 -17.997 12.866 26.766 1.00 0.00 2 ATOM 281 N MET 58 -17.873 10.759 24.630 1.00 0.00 2 ATOM 282 CA MET 58 -18.492 9.660 23.873 1.00 0.00 2 ATOM 283 C MET 58 -17.509 8.495 23.745 1.00 0.00 2 ATOM 284 O MET 58 -17.864 7.316 23.889 1.00 0.00 2 ATOM 285 CB MET 58 -18.778 10.188 22.454 1.00 0.00 2 ATOM 286 N LEU 59 -16.270 8.865 23.473 1.00 0.00 2 ATOM 287 CA LEU 59 -15.167 7.906 23.309 1.00 0.00 2 ATOM 288 C LEU 59 -15.033 7.085 24.593 1.00 0.00 2 ATOM 289 O LEU 59 -14.788 5.870 24.572 1.00 0.00 2 ATOM 290 CB LEU 59 -13.861 8.695 23.094 1.00 0.00 2 ATOM 291 N GLN 60 -15.200 7.786 25.699 1.00 0.00 2 ATOM 292 CA GLN 60 -15.113 7.195 27.042 1.00 0.00 2 ATOM 293 C GLN 60 -16.110 6.042 27.176 1.00 0.00 2 ATOM 294 O GLN 60 -15.811 4.979 27.738 1.00 0.00 2 ATOM 295 CB GLN 60 -15.495 8.283 28.063 1.00 0.00 2 ATOM 296 N ASN 61 -17.293 6.288 26.645 1.00 0.00 2 ATOM 297 CA ASN 61 -18.397 5.317 26.661 1.00 0.00 2 ATOM 298 C ASN 61 -17.976 4.035 25.938 1.00 0.00 2 ATOM 299 O ASN 61 -18.211 2.908 26.405 1.00 0.00 2 ATOM 300 CB ASN 61 -19.552 5.911 25.832 1.00 0.00 3 ATOM 301 N GLU 62 -17.352 4.246 24.792 1.00 0.00 3 ATOM 302 CA GLU 62 -16.862 3.156 23.937 1.00 0.00 3 ATOM 303 C GLU 62 -15.838 2.326 24.712 1.00 0.00 3 ATOM 304 O GLU 62 -15.807 1.089 24.641 1.00 0.00 3 ATOM 305 CB GLU 62 -16.160 3.784 22.719 1.00 0.00 3 ATOM 306 N LEU 63 -15.008 3.044 25.447 1.00 0.00 3 ATOM 307 CA LEU 63 -13.947 2.447 26.271 1.00 0.00 3 ATOM 308 C LEU 63 -14.555 1.490 27.297 1.00 0.00 3 ATOM 309 O LEU 63 -14.022 0.406 27.581 1.00 0.00 3 ATOM 310 CB LEU 63 -13.271 3.568 27.083 1.00 0.00 3 ATOM 311 N ASP 64 -15.681 1.923 27.835 1.00 0.00 3 ATOM 312 CA ASP 64 -16.433 1.162 28.844 1.00 0.00 3 ATOM 313 C ASP 64 -16.848 -0.164 28.202 1.00 0.00 3 ATOM 314 O ASP 64 -16.822 -1.234 28.830 1.00 0.00 3 ATOM 315 CB ASP 64 -17.726 1.928 29.177 1.00 0.00 3 ATOM 316 N LYS 65 -17.227 -0.056 26.941 1.00 0.00 3 ATOM 317 CA LYS 65 -17.667 -1.204 26.134 1.00 0.00 3 ATOM 318 C LYS 65 -16.477 -2.164 26.031 1.00 0.00 3 ATOM 319 O LYS 65 -16.619 -3.396 26.093 1.00 0.00 3 ATOM 320 CB LYS 65 -17.949 -0.700 24.707 1.00 0.00 3 ATOM 321 N TYR 66 -15.314 -1.559 25.872 1.00 0.00 3 ATOM 322 CA TYR 66 -14.043 -2.291 25.752 1.00 0.00 3 ATOM 323 C TYR 66 -13.820 -3.094 27.035 1.00 0.00 3 ATOM 324 O TYR 66 -13.325 -4.229 27.018 1.00 0.00 3 ATOM 325 CB TYR 66 -12.907 -1.254 25.657 1.00 0.00 3 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 244 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 53.63 82.3 96 100.0 96 ARMSMC SECONDARY STRUCTURE . . 51.62 83.7 92 100.0 92 ARMSMC SURFACE . . . . . . . . 53.63 82.3 96 100.0 96 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 19.93 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 19.93 49 100.0 49 CRMSCA CRN = ALL/NP . . . . . 0.4067 CRMSCA SECONDARY STRUCTURE . . 18.14 46 100.0 46 CRMSCA SURFACE . . . . . . . . 19.93 49 100.0 49 CRMSCA BURIED . . . . . . . . 0.00 0 0.0 0 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 19.95 244 100.0 244 CRMSMC SECONDARY STRUCTURE . . 18.28 230 100.0 230 CRMSMC SURFACE . . . . . . . . 19.95 244 100.0 244 CRMSMC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 19.87 48 21.7 221 CRMSSC RELIABLE SIDE CHAINS . 19.87 48 25.9 185 CRMSSC SECONDARY STRUCTURE . . 18.46 46 22.3 206 CRMSSC SURFACE . . . . . . . . 19.87 48 21.7 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 19.95 244 58.5 417 CRMSALL SECONDARY STRUCTURE . . 18.28 230 59.0 390 CRMSALL SURFACE . . . . . . . . 19.95 244 58.5 417 CRMSALL BURIED . . . . . . . . 0.00 0 0.0 0 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.580 1.000 0.500 49 100.0 49 ERRCA SECONDARY STRUCTURE . . 16.258 1.000 0.500 46 100.0 46 ERRCA SURFACE . . . . . . . . 17.580 1.000 0.500 49 100.0 49 ERRCA BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.561 1.000 0.500 244 100.0 244 ERRMC SECONDARY STRUCTURE . . 16.329 1.000 0.500 230 100.0 230 ERRMC SURFACE . . . . . . . . 17.561 1.000 0.500 244 100.0 244 ERRMC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.670 1.000 0.500 48 21.7 221 ERRSC RELIABLE SIDE CHAINS . 17.670 1.000 0.500 48 25.9 185 ERRSC SECONDARY STRUCTURE . . 16.678 1.000 0.500 46 22.3 206 ERRSC SURFACE . . . . . . . . 17.670 1.000 0.500 48 21.7 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.561 1.000 0.500 244 58.5 417 ERRALL SECONDARY STRUCTURE . . 16.329 1.000 0.500 230 59.0 390 ERRALL SURFACE . . . . . . . . 17.561 1.000 0.500 244 58.5 417 ERRALL BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 8 49 49 DISTCA CA (P) 0.00 0.00 0.00 2.04 16.33 49 DISTCA CA (RMS) 0.00 0.00 0.00 4.68 7.02 DISTCA ALL (N) 0 0 0 5 36 244 417 DISTALL ALL (P) 0.00 0.00 0.00 1.20 8.63 417 DISTALL ALL (RMS) 0.00 0.00 0.00 4.17 6.75 DISTALL END of the results output