####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 49 ( 196), selected 49 , name T0605TS328_1-D1 # Molecule2: number of CA atoms 49 ( 417), selected 49 , name T0605-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0605TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 18 - 43 4.90 29.77 LCS_AVERAGE: 45.94 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 20 - 40 1.87 30.84 LCS_AVERAGE: 29.61 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 20 - 36 0.90 30.70 LONGEST_CONTINUOUS_SEGMENT: 17 21 - 37 0.94 30.87 LCS_AVERAGE: 21.57 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 18 R 18 4 4 26 0 3 4 4 5 6 8 10 10 11 14 20 22 22 22 23 23 23 24 24 LCS_GDT G 19 G 19 4 19 26 3 3 4 4 5 7 9 13 18 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT S 20 S 20 17 21 26 4 10 15 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT L 21 L 21 17 21 26 5 13 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT R 22 R 22 17 21 26 4 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT D 23 D 23 17 21 26 8 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT L 24 L 24 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT Q 25 Q 25 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT Y 26 Y 26 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT A 27 A 27 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT L 28 L 28 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT Q 29 Q 29 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT E 30 E 30 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT K 31 K 31 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT I 32 I 32 17 21 26 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 25 LCS_GDT E 33 E 33 17 21 26 8 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT E 34 E 34 17 21 26 8 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT L 35 L 35 17 21 26 8 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT R 36 R 36 17 21 26 7 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT Q 37 Q 37 17 21 26 4 9 16 17 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT R 38 R 38 14 21 26 4 8 13 17 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT D 39 D 39 9 21 26 4 5 15 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT A 40 A 40 3 21 26 3 4 4 4 6 7 18 18 19 21 21 21 22 22 23 23 24 24 25 26 LCS_GDT L 41 L 41 3 6 26 0 3 3 5 8 8 8 10 16 19 20 21 22 22 23 23 24 24 25 26 LCS_GDT I 42 I 42 4 6 26 3 4 4 6 8 8 8 9 9 11 16 20 21 22 22 23 24 24 25 26 LCS_GDT D 43 D 43 4 6 26 3 4 4 6 8 8 8 9 9 12 16 19 20 22 22 23 24 24 25 26 LCS_GDT E 44 E 44 4 6 24 3 4 4 6 8 8 8 9 9 11 14 15 16 19 20 23 24 24 25 26 LCS_GDT L 45 L 45 4 6 14 3 4 4 6 8 8 8 9 9 11 14 15 16 17 19 22 24 24 25 26 LCS_GDT E 46 E 46 3 6 14 3 3 3 6 8 8 8 9 9 11 14 15 16 17 19 22 24 24 25 26 LCS_GDT L 47 L 47 3 3 14 1 3 3 4 4 4 6 7 8 11 14 15 16 17 19 22 24 24 25 26 LCS_GDT E 48 E 48 3 3 19 0 3 3 3 4 6 6 7 9 10 11 12 14 16 19 22 24 24 25 26 LCS_GDT L 49 L 49 3 4 19 3 3 3 4 4 4 5 7 9 10 12 13 14 16 19 22 24 24 25 26 LCS_GDT D 50 D 50 3 9 19 3 3 3 5 6 8 12 13 15 17 17 17 17 17 18 21 24 24 25 26 LCS_GDT Q 51 Q 51 7 13 19 5 6 10 13 13 13 14 15 16 17 17 17 17 17 18 19 19 23 25 26 LCS_GDT K 52 K 52 7 13 19 5 6 10 13 13 13 14 15 16 17 17 17 17 17 19 22 24 24 25 26 LCS_GDT D 53 D 53 11 13 19 5 5 10 13 13 13 14 15 16 17 17 17 17 17 19 22 24 24 25 26 LCS_GDT E 54 E 54 11 13 19 6 10 10 13 13 13 14 15 16 17 17 17 17 17 19 22 24 24 25 26 LCS_GDT L 55 L 55 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 19 22 24 24 25 26 LCS_GDT I 56 I 56 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 19 22 24 24 25 26 LCS_GDT Q 57 Q 57 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 19 22 24 24 25 26 LCS_GDT M 58 M 58 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 19 22 24 24 25 26 LCS_GDT L 59 L 59 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 18 18 19 20 23 25 LCS_GDT Q 60 Q 60 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 18 18 19 20 23 25 LCS_GDT N 61 N 61 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 18 18 19 20 22 25 LCS_GDT E 62 E 62 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 18 18 19 19 19 19 LCS_GDT L 63 L 63 11 13 19 9 10 10 13 13 13 14 15 16 17 17 17 17 17 18 18 19 19 19 19 LCS_GDT D 64 D 64 3 13 19 3 3 4 6 10 11 13 15 16 17 17 17 17 17 18 18 19 19 19 19 LCS_GDT K 65 K 65 3 5 19 3 3 4 5 10 11 13 14 16 17 17 17 17 17 18 18 19 19 19 19 LCS_GDT Y 66 Y 66 3 5 19 0 3 3 5 10 11 14 15 16 17 17 17 17 17 18 18 19 19 19 19 LCS_AVERAGE LCS_A: 32.38 ( 21.57 29.61 45.94 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 15 16 18 20 20 20 20 20 21 21 21 22 22 23 23 24 24 25 26 GDT PERCENT_AT 18.37 30.61 32.65 36.73 40.82 40.82 40.82 40.82 40.82 42.86 42.86 42.86 44.90 44.90 46.94 46.94 48.98 48.98 51.02 53.06 GDT RMS_LOCAL 0.26 0.60 0.72 1.00 1.31 1.31 1.31 1.31 1.31 1.87 1.87 1.87 2.47 2.47 3.13 3.00 3.88 3.88 4.52 6.97 GDT RMS_ALL_AT 34.85 30.68 30.65 30.88 31.40 31.40 31.40 31.40 31.40 30.84 30.84 30.84 31.35 31.35 30.80 31.96 29.84 29.84 29.17 21.98 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 18 R 18 9.766 7 0.293 0.293 10.640 7.262 2.641 LGA G 19 G 19 7.932 0 0.518 0.518 8.240 10.595 10.595 LGA S 20 S 20 2.308 2 0.352 0.352 3.871 67.738 45.159 LGA L 21 L 21 1.644 4 0.048 0.048 1.658 75.000 37.500 LGA R 22 R 22 1.238 7 0.064 0.064 2.052 79.524 28.918 LGA D 23 D 23 0.627 4 0.018 0.018 0.627 95.238 47.619 LGA L 24 L 24 0.377 4 0.021 0.021 0.728 95.238 47.619 LGA Q 25 Q 25 1.315 5 0.084 0.084 1.315 83.690 37.196 LGA Y 26 Y 26 1.369 8 0.065 0.065 1.369 81.429 27.143 LGA A 27 A 27 0.588 1 0.024 0.024 0.643 90.476 72.381 LGA L 28 L 28 0.284 4 0.046 0.046 0.585 97.619 48.810 LGA Q 29 Q 29 0.752 5 0.059 0.059 0.994 90.476 40.212 LGA E 30 E 30 1.072 5 0.021 0.021 1.072 85.952 38.201 LGA K 31 K 31 0.879 5 0.023 0.023 0.908 90.476 40.212 LGA I 32 I 32 0.795 4 0.044 0.044 0.808 90.476 45.238 LGA E 33 E 33 0.632 5 0.019 0.019 0.662 90.476 40.212 LGA E 34 E 34 0.447 5 0.049 0.049 0.789 97.619 43.386 LGA L 35 L 35 0.369 4 0.060 0.060 0.522 97.619 48.810 LGA R 36 R 36 1.213 7 0.109 0.109 1.356 83.690 30.433 LGA Q 37 Q 37 2.290 5 0.065 0.065 2.385 66.786 29.683 LGA R 38 R 38 2.409 7 0.095 0.095 2.409 70.833 25.758 LGA D 39 D 39 1.974 4 0.232 0.232 2.726 69.048 34.524 LGA A 40 A 40 6.765 1 0.621 0.621 9.811 12.500 10.000 LGA L 41 L 41 10.428 4 0.598 0.598 13.378 1.190 0.595 LGA I 42 I 42 13.922 4 0.612 0.612 15.041 0.000 0.000 LGA D 43 D 43 15.709 4 0.577 0.577 16.681 0.000 0.000 LGA E 44 E 44 19.472 5 0.227 0.227 21.774 0.000 0.000 LGA L 45 L 45 21.756 4 0.612 0.612 25.283 0.000 0.000 LGA E 46 E 46 24.969 5 0.641 0.641 27.246 0.000 0.000 LGA L 47 L 47 29.481 4 0.614 0.614 33.786 0.000 0.000 LGA E 48 E 48 37.964 5 0.655 0.655 41.288 0.000 0.000 LGA L 49 L 49 40.977 4 0.655 0.655 43.371 0.000 0.000 LGA D 50 D 50 45.661 4 0.082 0.082 47.808 0.000 0.000 LGA Q 51 Q 51 47.781 5 0.609 0.609 48.154 0.000 0.000 LGA K 52 K 52 46.182 5 0.071 0.071 47.555 0.000 0.000 LGA D 53 D 53 49.043 4 0.027 0.027 50.250 0.000 0.000 LGA E 54 E 54 50.234 5 0.169 0.169 50.470 0.000 0.000 LGA L 55 L 55 48.576 4 0.050 0.050 48.958 0.000 0.000 LGA I 56 I 56 47.767 4 0.022 0.022 48.927 0.000 0.000 LGA Q 57 Q 57 50.838 5 0.067 0.067 52.145 0.000 0.000 LGA M 58 M 58 52.188 4 0.040 0.040 52.349 0.000 0.000 LGA L 59 L 59 49.810 4 0.028 0.028 50.612 0.000 0.000 LGA Q 60 Q 60 50.503 5 0.021 0.021 52.091 0.000 0.000 LGA N 61 N 61 53.878 4 0.021 0.021 54.729 0.000 0.000 LGA E 62 E 62 53.665 5 0.046 0.046 53.665 0.000 0.000 LGA L 63 L 63 51.169 4 0.523 0.523 52.299 0.000 0.000 LGA D 64 D 64 49.943 4 0.095 0.095 50.084 0.000 0.000 LGA K 65 K 65 49.523 5 0.553 0.553 51.067 0.000 0.000 LGA Y 66 Y 66 48.122 8 0.579 0.579 49.188 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 417 196 47.00 49 SUMMARY(RMSD_GDC): 16.975 16.900 16.900 35.326 16.997 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 49 49 4.0 20 1.31 38.776 37.255 1.417 LGA_LOCAL RMSD: 1.311 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 31.405 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 16.975 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.209229 * X + 0.625178 * Y + 0.751915 * Z + -9.696500 Y_new = 0.009151 * X + -0.767648 * Y + 0.640806 * Z + 67.853996 Z_new = 0.977824 * X + 0.140956 * Y + 0.154893 * Z + -46.626823 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.097886 -1.359806 0.738322 [DEG: 177.4958 -77.9111 42.3027 ] ZXZ: 2.276585 1.415277 1.427630 [DEG: 130.4387 81.0894 81.7972 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0605TS328_1-D1 REMARK 2: T0605-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0605TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 49 49 4.0 20 1.31 37.255 16.98 REMARK ---------------------------------------------------------- MOLECULE T0605TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0605 REMARK MODEL 1 REMARK PARENT 1kz1_C ATOM 25 N ARG 18 -4.866 63.287 21.590 1.00 3.00 N ATOM 26 CA ARG 18 -5.559 63.883 20.468 1.00 3.00 C ATOM 27 C ARG 18 -4.630 64.629 19.506 1.00 3.00 C ATOM 28 O ARG 18 -5.082 65.288 18.565 1.00 3.00 O ATOM 29 N GLY 19 -3.326 64.545 19.731 1.00 3.00 N ATOM 30 CA GLY 19 -2.433 65.184 18.778 1.00 3.00 C ATOM 31 C GLY 19 -2.366 64.272 17.546 1.00 3.00 C ATOM 32 O GLY 19 -2.362 63.044 17.695 1.00 3.00 O ATOM 33 N SER 20 -2.341 64.842 16.339 1.00 3.00 N ATOM 34 CA SER 20 -2.234 64.067 15.092 1.00 3.00 C ATOM 35 C SER 20 -3.391 63.110 14.890 1.00 3.00 C ATOM 36 O SER 20 -3.192 61.913 14.646 1.00 3.00 O ATOM 37 N LEU 21 -4.599 63.645 14.970 1.00 3.00 N ATOM 38 CA LEU 21 -5.815 62.841 14.828 1.00 3.00 C ATOM 39 C LEU 21 -5.913 62.021 13.527 1.00 3.00 C ATOM 40 O LEU 21 -6.537 60.960 13.506 1.00 3.00 O ATOM 41 N ARG 22 -5.289 62.491 12.448 1.00 3.00 N ATOM 42 CA ARG 22 -5.322 61.754 11.184 1.00 3.00 C ATOM 43 C ARG 22 -4.698 60.386 11.362 1.00 3.00 C ATOM 44 O ARG 22 -5.021 59.452 10.640 1.00 3.00 O ATOM 45 N ASP 23 -3.744 60.281 12.278 1.00 3.00 N ATOM 46 CA ASP 23 -3.108 58.992 12.507 1.00 3.00 C ATOM 47 C ASP 23 -3.799 58.279 13.669 1.00 3.00 C ATOM 48 O ASP 23 -3.961 57.069 13.624 1.00 3.00 O ATOM 49 N LEU 24 -4.191 59.034 14.694 1.00 3.00 N ATOM 50 CA LEU 24 -4.833 58.456 15.885 1.00 3.00 C ATOM 51 C LEU 24 -6.127 57.715 15.543 1.00 3.00 C ATOM 52 O LEU 24 -6.316 56.560 15.944 1.00 3.00 O ATOM 53 N GLN 25 -7.007 58.369 14.788 1.00 3.00 N ATOM 54 CA GLN 25 -8.289 57.767 14.438 1.00 3.00 C ATOM 55 C GLN 25 -8.173 56.360 13.847 1.00 3.00 C ATOM 56 O GLN 25 -8.809 55.433 14.333 1.00 3.00 O ATOM 57 N TYR 26 -7.341 56.168 12.810 1.00 3.00 N ATOM 58 CA TYR 26 -7.223 54.821 12.242 1.00 3.00 C ATOM 59 C TYR 26 -6.595 53.849 13.238 1.00 3.00 C ATOM 60 O TYR 26 -6.863 52.654 13.195 1.00 3.00 O ATOM 61 N ALA 27 -5.730 54.344 14.118 1.00 3.00 N ATOM 62 CA ALA 27 -5.112 53.432 15.070 1.00 3.00 C ATOM 63 C ALA 27 -6.150 52.903 16.064 1.00 3.00 C ATOM 64 O ALA 27 -6.212 51.701 16.338 1.00 3.00 O ATOM 65 N LEU 28 -6.930 53.826 16.617 1.00 3.00 N ATOM 66 CA LEU 28 -7.961 53.495 17.582 1.00 3.00 C ATOM 67 C LEU 28 -8.989 52.565 16.922 1.00 3.00 C ATOM 68 O LEU 28 -9.349 51.523 17.474 1.00 3.00 O ATOM 69 N GLN 29 -9.423 52.940 15.723 1.00 3.00 N ATOM 70 CA GLN 29 -10.411 52.162 14.970 1.00 3.00 C ATOM 71 C GLN 29 -9.875 50.759 14.710 1.00 3.00 C ATOM 72 O GLN 29 -10.596 49.766 14.900 1.00 3.00 O ATOM 73 N GLU 30 -8.612 50.678 14.287 1.00 3.00 N ATOM 74 CA GLU 30 -7.991 49.385 14.031 1.00 3.00 C ATOM 75 C GLU 30 -7.977 48.490 15.271 1.00 3.00 C ATOM 76 O GLU 30 -8.289 47.310 15.191 1.00 3.00 O ATOM 77 N LYS 31 -7.614 49.061 16.416 1.00 3.00 N ATOM 78 CA LYS 31 -7.566 48.308 17.662 1.00 3.00 C ATOM 79 C LYS 31 -8.965 47.792 18.033 1.00 3.00 C ATOM 80 O LYS 31 -9.124 46.639 18.377 1.00 3.00 O ATOM 81 N ILE 32 -9.950 48.677 17.979 1.00 3.00 N ATOM 82 CA ILE 32 -11.317 48.325 18.336 1.00 3.00 C ATOM 83 C ILE 32 -11.859 47.275 17.396 1.00 3.00 C ATOM 84 O ILE 32 -12.316 46.222 17.826 1.00 3.00 O ATOM 85 N GLU 33 -11.788 47.537 16.102 1.00 3.00 N ATOM 86 CA GLU 33 -12.301 46.575 15.144 1.00 3.00 C ATOM 87 C GLU 33 -11.660 45.218 15.258 1.00 3.00 C ATOM 88 O GLU 33 -12.321 44.187 15.094 1.00 3.00 O ATOM 89 N GLU 34 -10.358 45.202 15.490 1.00 3.00 N ATOM 90 CA GLU 34 -9.663 43.936 15.613 1.00 3.00 C ATOM 91 C GLU 34 -10.159 43.185 16.868 1.00 3.00 C ATOM 92 O GLU 34 -10.407 41.994 16.817 1.00 3.00 O ATOM 93 N LEU 35 -10.291 43.894 17.985 1.00 3.00 N ATOM 94 CA LEU 35 -10.714 43.256 19.215 1.00 3.00 C ATOM 95 C LEU 35 -12.107 42.665 19.064 1.00 3.00 C ATOM 96 O LEU 35 -12.340 41.514 19.440 1.00 3.00 O ATOM 97 N ARG 36 -13.009 43.459 18.493 1.00 3.00 N ATOM 98 CA ARG 36 -14.381 43.037 18.274 1.00 3.00 C ATOM 99 C ARG 36 -14.505 41.909 17.259 1.00 3.00 C ATOM 100 O ARG 36 -14.947 40.810 17.594 1.00 3.00 O ATOM 101 N GLN 37 -14.078 42.157 16.029 1.00 3.00 N ATOM 102 CA GLN 37 -14.215 41.165 14.971 1.00 3.00 C ATOM 103 C GLN 37 -13.312 39.958 15.060 1.00 3.00 C ATOM 104 O GLN 37 -13.681 38.862 14.656 1.00 3.00 O ATOM 105 N ARG 38 -12.123 40.132 15.603 1.00 3.00 N ATOM 106 CA ARG 38 -11.229 38.996 15.632 1.00 3.00 C ATOM 107 C ARG 38 -11.126 38.304 16.973 1.00 3.00 C ATOM 108 O ARG 38 -10.741 37.145 17.021 1.00 3.00 O ATOM 109 N ASP 39 -11.477 38.997 18.053 1.00 3.00 N ATOM 110 CA ASP 39 -11.370 38.390 19.375 1.00 3.00 C ATOM 111 C ASP 39 -12.494 38.755 20.338 1.00 3.00 C ATOM 112 O ASP 39 -13.475 38.001 20.446 1.00 3.00 O ATOM 113 N ALA 40 -12.318 39.818 21.127 1.00 3.00 N ATOM 114 CA ALA 40 -13.362 40.256 22.022 1.00 3.00 C ATOM 115 C ALA 40 -14.115 41.440 21.392 1.00 3.00 C ATOM 116 O ALA 40 -13.484 42.494 21.106 1.00 3.00 O ATOM 117 N LEU 41 -15.438 41.298 21.312 1.00 3.00 N ATOM 118 CA LEU 41 -16.242 42.351 20.703 1.00 3.00 C ATOM 119 C LEU 41 -16.725 43.385 21.716 1.00 3.00 C ATOM 120 O LEU 41 -17.188 43.017 22.798 1.00 3.00 O ATOM 121 N ILE 42 -16.707 44.672 21.388 1.00 3.00 N ATOM 122 CA ILE 42 -17.295 45.726 22.253 1.00 3.00 C ATOM 123 C ILE 42 -18.807 45.519 22.269 1.00 3.00 C ATOM 124 O ILE 42 -19.318 44.789 21.384 1.00 3.00 O ATOM 125 N ASP 43 -19.551 46.106 23.190 1.00 3.00 N ATOM 126 CA ASP 43 -19.077 46.961 24.251 1.00 3.00 C ATOM 127 C ASP 43 -18.273 46.254 25.322 1.00 3.00 C ATOM 128 O ASP 43 -18.389 45.040 25.532 1.00 3.00 O ATOM 129 N GLU 44 -17.562 47.038 26.128 1.00 3.00 N ATOM 130 CA GLU 44 -16.729 46.482 27.211 1.00 3.00 C ATOM 131 C GLU 44 -15.435 47.231 26.889 1.00 3.00 C ATOM 132 O GLU 44 -14.426 47.084 27.588 1.00 3.00 O ATOM 133 N LEU 45 -15.480 48.034 25.835 1.00 3.00 N ATOM 134 CA LEU 45 -14.320 48.808 25.430 1.00 3.00 C ATOM 135 C LEU 45 -14.573 50.267 25.745 1.00 3.00 C ATOM 136 O LEU 45 -15.399 50.924 25.110 1.00 3.00 O ATOM 137 N GLU 46 -13.876 50.770 26.747 1.00 3.00 N ATOM 138 CA GLU 46 -13.999 52.165 27.091 1.00 3.00 C ATOM 139 C GLU 46 -12.891 52.903 26.356 1.00 3.00 C ATOM 140 O GLU 46 -11.730 52.475 26.350 1.00 3.00 O ATOM 141 N LEU 47 -13.258 54.010 25.740 1.00 3.00 N ATOM 142 CA LEU 47 -12.315 54.815 25.025 1.00 3.00 C ATOM 143 C LEU 47 -12.333 56.186 25.660 1.00 3.00 C ATOM 144 O LEU 47 -13.377 56.816 25.791 1.00 3.00 O ATOM 145 N GLU 48 -9.930 59.973 26.021 1.00 3.00 N ATOM 146 CA GLU 48 -8.882 60.710 25.354 1.00 3.00 C ATOM 147 C GLU 48 -8.292 61.669 26.362 1.00 3.00 C ATOM 148 O GLU 48 -8.888 61.966 27.412 1.00 3.00 O ATOM 149 N LEU 49 -7.085 62.103 26.048 1.00 3.00 N ATOM 150 CA LEU 49 -6.381 63.071 26.857 1.00 3.00 C ATOM 151 C LEU 49 -5.802 63.985 25.775 1.00 3.00 C ATOM 152 O LEU 49 -5.648 63.581 24.608 1.00 3.00 O ATOM 153 N ASP 50 -5.488 65.224 26.141 1.00 3.00 N ATOM 154 CA ASP 50 -4.937 66.195 25.196 1.00 3.00 C ATOM 155 C ASP 50 -3.709 65.700 24.422 1.00 3.00 C ATOM 156 O ASP 50 -3.730 65.674 23.198 1.00 3.00 O ATOM 157 N GLN 51 -2.656 65.275 25.132 1.00 3.00 N ATOM 158 CA GLN 51 -1.442 64.852 24.433 1.00 3.00 C ATOM 159 C GLN 51 -0.868 63.563 24.989 1.00 3.00 C ATOM 160 O GLN 51 -1.360 63.001 25.977 1.00 3.00 O ATOM 161 N LYS 52 0.175 63.075 24.348 1.00 3.00 N ATOM 162 CA LYS 52 0.791 61.836 24.788 1.00 3.00 C ATOM 163 C LYS 52 1.311 61.945 26.196 1.00 3.00 C ATOM 164 O LYS 52 1.348 60.962 26.920 1.00 3.00 O ATOM 165 N ASP 53 1.730 63.141 26.584 1.00 3.00 N ATOM 166 CA ASP 53 2.245 63.332 27.922 1.00 3.00 C ATOM 167 C ASP 53 1.244 62.846 28.972 1.00 3.00 C ATOM 168 O ASP 53 1.630 62.287 29.987 1.00 3.00 O ATOM 169 N GLU 54 -0.034 63.131 28.729 1.00 3.00 N ATOM 170 CA GLU 54 -1.097 62.766 29.665 1.00 3.00 C ATOM 171 C GLU 54 -1.499 61.311 29.633 1.00 3.00 C ATOM 172 O GLU 54 -2.317 60.864 30.434 1.00 3.00 O ATOM 173 N LEU 55 -0.914 60.551 28.729 1.00 3.00 N ATOM 174 CA LEU 55 -1.275 59.161 28.626 1.00 3.00 C ATOM 175 C LEU 55 -1.098 58.333 29.913 1.00 3.00 C ATOM 176 O LEU 55 -2.034 57.671 30.353 1.00 3.00 O ATOM 177 N ILE 56 0.089 58.376 30.545 1.00 3.00 N ATOM 178 CA ILE 56 0.247 57.571 31.764 1.00 3.00 C ATOM 179 C ILE 56 -0.727 57.987 32.863 1.00 3.00 C ATOM 180 O ILE 56 -1.341 57.133 33.516 1.00 3.00 O ATOM 181 N GLN 57 -0.890 59.291 33.057 1.00 3.00 N ATOM 182 CA GLN 57 -1.790 59.744 34.097 1.00 3.00 C ATOM 183 C GLN 57 -3.234 59.461 33.805 1.00 3.00 C ATOM 184 O GLN 57 -3.962 59.126 34.705 1.00 3.00 O ATOM 185 N MET 58 -3.643 59.601 32.550 1.00 3.00 N ATOM 186 CA MET 58 -5.012 59.318 32.171 1.00 3.00 C ATOM 187 C MET 58 -5.292 57.848 32.430 1.00 3.00 C ATOM 188 O MET 58 -6.341 57.482 32.953 1.00 3.00 O ATOM 189 N LEU 59 -4.352 56.987 32.064 1.00 3.00 N ATOM 190 CA LEU 59 -4.540 55.581 32.298 1.00 3.00 C ATOM 191 C LEU 59 -4.571 55.280 33.797 1.00 3.00 C ATOM 192 O LEU 59 -5.472 54.571 34.273 1.00 3.00 O ATOM 193 N GLN 60 -3.625 55.850 34.540 1.00 3.00 N ATOM 194 CA GLN 60 -3.523 55.581 35.961 1.00 3.00 C ATOM 195 C GLN 60 -4.822 55.960 36.640 1.00 3.00 C ATOM 196 O GLN 60 -5.328 55.209 37.471 1.00 3.00 O ATOM 197 N ASN 61 -5.353 57.122 36.284 1.00 3.00 N ATOM 198 CA ASN 61 -6.605 57.584 36.860 1.00 3.00 C ATOM 199 C ASN 61 -7.745 56.641 36.513 1.00 3.00 C ATOM 200 O ASN 61 -8.559 56.302 37.370 1.00 3.00 O ATOM 201 N GLU 62 -7.818 56.220 35.261 1.00 3.00 N ATOM 202 CA GLU 62 -8.903 55.347 34.865 1.00 3.00 C ATOM 203 C GLU 62 -8.870 53.959 35.455 1.00 3.00 C ATOM 204 O GLU 62 -9.916 53.410 35.804 1.00 3.00 O ATOM 205 N LEU 63 -7.700 53.365 35.582 1.00 3.00 N ATOM 206 CA LEU 63 -7.693 52.026 36.123 1.00 3.00 C ATOM 207 C LEU 63 -9.139 51.619 36.323 1.00 3.00 C ATOM 208 O LEU 63 -9.598 51.483 37.453 1.00 3.00 O ATOM 209 N ASP 64 -9.858 51.393 35.233 1.00 3.00 N ATOM 210 CA ASP 64 -11.259 51.026 35.333 1.00 3.00 C ATOM 211 C ASP 64 -11.664 49.774 34.548 1.00 3.00 C ATOM 212 O ASP 64 -12.760 49.247 34.732 1.00 3.00 O ATOM 213 N LYS 65 -10.781 49.313 33.663 1.00 3.00 N ATOM 214 CA LYS 65 -11.096 48.140 32.866 1.00 3.00 C ATOM 215 C LYS 65 -10.257 46.926 33.221 1.00 3.00 C ATOM 216 O LYS 65 -9.144 47.059 33.744 1.00 3.00 O ATOM 217 N TYR 66 -10.777 45.727 32.969 1.00 3.00 N ATOM 218 CA TYR 66 -10.077 44.490 33.278 1.00 3.00 C ATOM 219 C TYR 66 -9.311 43.934 32.069 1.00 3.00 C ATOM 220 O TYR 66 -9.627 44.261 30.923 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 196 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 68.92 65.6 96 100.0 96 ARMSMC SECONDARY STRUCTURE . . 66.02 68.5 92 100.0 92 ARMSMC SURFACE . . . . . . . . 68.92 65.6 96 100.0 96 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 16.98 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 16.98 49 100.0 49 CRMSCA CRN = ALL/NP . . . . . 0.3464 CRMSCA SECONDARY STRUCTURE . . 15.51 46 100.0 46 CRMSCA SURFACE . . . . . . . . 16.98 49 100.0 49 CRMSCA BURIED . . . . . . . . 0.00 0 0.0 0 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 16.91 196 80.3 244 CRMSMC SECONDARY STRUCTURE . . 15.48 184 80.0 230 CRMSMC SURFACE . . . . . . . . 16.91 196 80.3 244 CRMSMC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 221 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 185 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 206 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 16.91 196 47.0 417 CRMSALL SECONDARY STRUCTURE . . 15.48 184 47.2 390 CRMSALL SURFACE . . . . . . . . 16.91 196 47.0 417 CRMSALL BURIED . . . . . . . . 0.00 0 0.0 0 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.845 0.649 0.325 49 100.0 49 ERRCA SECONDARY STRUCTURE . . 11.805 0.638 0.319 46 100.0 46 ERRCA SURFACE . . . . . . . . 12.845 0.649 0.325 49 100.0 49 ERRCA BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.812 0.650 0.325 196 80.3 244 ERRMC SECONDARY STRUCTURE . . 11.791 0.639 0.319 184 80.0 230 ERRMC SURFACE . . . . . . . . 12.812 0.650 0.325 196 80.3 244 ERRMC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 221 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 185 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 206 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.812 0.650 0.325 196 47.0 417 ERRALL SECONDARY STRUCTURE . . 11.791 0.639 0.319 184 47.2 390 ERRALL SURFACE . . . . . . . . 12.812 0.650 0.325 196 47.0 417 ERRALL BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 8 49 49 DISTCA CA (P) 0.00 0.00 0.00 0.00 16.33 49 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.58 DISTCA ALL (N) 0 0 0 1 28 196 417 DISTALL ALL (P) 0.00 0.00 0.00 0.24 6.71 417 DISTALL ALL (RMS) 0.00 0.00 0.00 4.96 8.51 DISTALL END of the results output