####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 300), selected 35 , name T0605TS171_1-D1 # Molecule2: number of CA atoms 49 ( 417), selected 35 , name T0605-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0605TS171_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 32 - 66 1.98 1.98 LCS_AVERAGE: 71.43 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 32 - 66 1.98 1.98 LCS_AVERAGE: 71.43 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 41 - 66 0.92 2.84 LCS_AVERAGE: 49.50 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 32 I 32 17 35 35 9 12 16 17 21 25 25 31 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT E 33 E 33 17 35 35 9 12 16 19 23 25 30 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT E 34 E 34 18 35 35 9 14 20 27 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 35 L 35 18 35 35 9 14 20 27 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT R 36 R 36 18 35 35 9 14 20 24 31 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Q 37 Q 37 19 35 35 9 14 20 27 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT R 38 R 38 22 35 35 9 19 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 39 D 39 22 35 35 9 14 22 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT A 40 A 40 22 35 35 9 15 22 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 41 L 41 26 35 35 7 15 24 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 42 I 42 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 43 D 43 26 35 35 8 18 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT E 44 E 44 26 35 35 8 18 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 45 L 45 26 35 35 7 18 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT E 46 E 46 26 35 35 9 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 47 L 47 26 35 35 8 19 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT E 48 E 48 26 35 35 8 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 49 L 49 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 50 D 50 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Q 51 Q 51 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 52 K 52 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 53 D 53 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT E 54 E 54 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 55 L 55 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 56 I 56 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Q 57 Q 57 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT M 58 M 58 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 59 L 59 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Q 60 Q 60 26 35 35 9 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT N 61 N 61 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT E 62 E 62 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 63 L 63 26 35 35 9 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 64 D 64 26 35 35 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 65 K 65 26 35 35 12 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 66 Y 66 26 35 35 6 19 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 64.12 ( 49.50 71.43 71.43 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 20 26 29 32 33 33 34 35 35 35 35 35 35 35 35 35 35 35 35 GDT PERCENT_AT 26.53 40.82 53.06 59.18 65.31 67.35 67.35 69.39 71.43 71.43 71.43 71.43 71.43 71.43 71.43 71.43 71.43 71.43 71.43 71.43 GDT RMS_LOCAL 0.28 0.56 0.86 1.12 1.44 1.56 1.56 1.79 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 GDT RMS_ALL_AT 3.98 3.42 2.80 2.48 2.16 2.07 2.07 2.00 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 1.98 # Checking swapping # possible swapping detected: E 34 E 34 # possible swapping detected: E 48 E 48 # possible swapping detected: E 54 E 54 # possible swapping detected: D 64 D 64 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 32 I 32 5.621 0 0.454 0.990 10.210 29.048 17.500 LGA E 33 E 33 5.019 0 0.053 1.430 9.117 36.429 23.862 LGA E 34 E 34 1.824 0 0.074 1.187 4.769 75.476 59.947 LGA L 35 L 35 2.084 0 0.062 0.319 4.229 68.810 54.583 LGA R 36 R 36 3.016 0 0.041 1.197 5.504 59.167 39.221 LGA Q 37 Q 37 2.188 0 0.042 0.610 7.229 70.952 45.185 LGA R 38 R 38 1.210 0 0.062 1.284 10.211 83.690 47.532 LGA D 39 D 39 1.304 0 0.033 1.129 6.649 85.952 59.940 LGA A 40 A 40 0.952 0 0.031 0.037 1.909 85.952 83.333 LGA L 41 L 41 2.041 0 0.041 0.935 7.090 70.952 51.071 LGA I 42 I 42 2.132 0 0.045 0.126 3.347 70.833 64.048 LGA D 43 D 43 1.065 0 0.046 0.941 3.898 85.952 73.095 LGA E 44 E 44 1.091 0 0.032 1.395 5.122 79.405 64.815 LGA L 45 L 45 2.339 0 0.090 1.426 7.145 66.786 48.095 LGA E 46 E 46 2.113 0 0.069 1.009 3.491 70.952 65.026 LGA L 47 L 47 1.072 0 0.036 1.411 3.878 81.429 70.000 LGA E 48 E 48 1.354 0 0.085 0.739 4.832 77.143 58.254 LGA L 49 L 49 1.578 0 0.032 0.928 3.764 77.143 72.381 LGA D 50 D 50 1.450 0 0.027 1.150 3.921 81.429 74.524 LGA Q 51 Q 51 1.709 0 0.067 1.120 4.851 72.857 63.386 LGA K 52 K 52 1.407 0 0.024 1.145 6.964 79.286 62.328 LGA D 53 D 53 0.790 0 0.060 0.213 1.096 90.595 89.405 LGA E 54 E 54 1.145 0 0.056 0.433 1.998 81.429 80.476 LGA L 55 L 55 1.066 0 0.018 1.422 3.147 85.952 77.679 LGA I 56 I 56 0.526 0 0.048 0.170 1.028 92.857 91.726 LGA Q 57 Q 57 0.771 0 0.040 1.103 2.781 92.857 83.862 LGA M 58 M 58 0.312 0 0.069 1.067 1.891 100.000 89.821 LGA L 59 L 59 1.114 0 0.035 1.423 3.399 83.690 75.476 LGA Q 60 Q 60 1.989 0 0.041 1.014 2.513 72.976 74.180 LGA N 61 N 61 1.514 0 0.030 1.114 3.522 77.143 69.405 LGA E 62 E 62 0.497 0 0.030 0.544 2.583 92.857 83.016 LGA L 63 L 63 2.039 0 0.035 0.448 4.133 68.929 59.643 LGA D 64 D 64 2.421 0 0.086 0.888 3.163 62.857 58.214 LGA K 65 K 65 0.859 0 0.046 0.795 3.105 88.214 77.513 LGA Y 66 Y 66 1.500 0 0.031 1.089 5.195 75.238 62.460 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 300 300 100.00 49 SUMMARY(RMSD_GDC): 1.980 1.822 2.973 54.597 46.347 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 49 4.0 34 1.79 60.204 65.789 1.798 LGA_LOCAL RMSD: 1.791 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.005 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 1.980 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.061920 * X + 0.736435 * Y + 0.673669 * Z + -30.296125 Y_new = -0.997580 * X + 0.067050 * Y + 0.018395 * Z + -0.584509 Z_new = -0.031623 * X + -0.673178 * Y + 0.738804 * Z + 57.086433 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.508805 0.031628 -0.738953 [DEG: -86.4482 1.8122 -42.3389 ] ZXZ: 1.598095 0.739502 -3.094651 [DEG: 91.5641 42.3704 -177.3105 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0605TS171_1-D1 REMARK 2: T0605-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0605TS171_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 49 4.0 34 1.79 65.789 1.98 REMARK ---------------------------------------------------------- MOLECULE T0605TS171_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0605 REMARK MODEL 1 REMARK PARENT 1zxa_A ATOM 1 N ILE 32 -11.685 46.925 13.847 1.00 0.00 N ATOM 2 CA ILE 32 -11.325 46.470 12.488 1.00 0.00 C ATOM 3 CB ILE 32 -10.088 47.200 12.026 1.00 0.00 C ATOM 4 CG2 ILE 32 -8.900 46.745 12.892 1.00 0.00 C ATOM 5 CG1 ILE 32 -9.875 47.047 10.510 1.00 0.00 C ATOM 6 CD1 ILE 32 -8.850 48.025 9.934 1.00 0.00 C ATOM 7 C ILE 32 -11.113 44.987 12.484 1.00 0.00 C ATOM 8 O ILE 32 -11.824 44.251 13.168 1.00 0.00 O ATOM 9 N GLU 33 -10.130 44.505 11.702 1.00 0.00 N ATOM 10 CA GLU 33 -9.884 43.098 11.604 1.00 0.00 C ATOM 11 CB GLU 33 -8.809 42.741 10.565 1.00 0.00 C ATOM 12 CG GLU 33 -9.253 43.009 9.128 1.00 0.00 C ATOM 13 CD GLU 33 -8.146 42.526 8.205 1.00 0.00 C ATOM 14 OE1 GLU 33 -6.954 42.743 8.548 1.00 0.00 O ATOM 15 OE2 GLU 33 -8.481 41.923 7.152 1.00 0.00 O ATOM 16 C GLU 33 -9.427 42.585 12.930 1.00 0.00 C ATOM 17 O GLU 33 -9.814 41.494 13.337 1.00 0.00 O ATOM 18 N GLU 34 -8.585 43.355 13.644 1.00 0.00 N ATOM 19 CA GLU 34 -8.070 42.878 14.896 1.00 0.00 C ATOM 20 CB GLU 34 -7.084 43.865 15.546 1.00 0.00 C ATOM 21 CG GLU 34 -6.511 43.391 16.886 1.00 0.00 C ATOM 22 CD GLU 34 -5.525 42.262 16.610 1.00 0.00 C ATOM 23 OE1 GLU 34 -5.984 41.164 16.199 1.00 0.00 O ATOM 24 OE2 GLU 34 -4.300 42.485 16.793 1.00 0.00 O ATOM 25 C GLU 34 -9.199 42.682 15.853 1.00 0.00 C ATOM 26 O GLU 34 -9.291 41.651 16.518 1.00 0.00 O ATOM 27 N LEU 35 -10.103 43.672 15.934 1.00 0.00 N ATOM 28 CA LEU 35 -11.189 43.587 16.863 1.00 0.00 C ATOM 29 CB LEU 35 -12.067 44.850 16.873 1.00 0.00 C ATOM 30 CG LEU 35 -11.308 46.113 17.316 1.00 0.00 C ATOM 31 CD1 LEU 35 -10.801 45.981 18.763 1.00 0.00 C ATOM 32 CD2 LEU 35 -10.197 46.470 16.317 1.00 0.00 C ATOM 33 C LEU 35 -12.057 42.436 16.471 1.00 0.00 C ATOM 34 O LEU 35 -12.477 41.647 17.316 1.00 0.00 O ATOM 35 N ARG 36 -12.321 42.304 15.159 1.00 0.00 N ATOM 36 CA ARG 36 -13.177 41.274 14.651 1.00 0.00 C ATOM 37 CB ARG 36 -13.335 41.375 13.121 1.00 0.00 C ATOM 38 CG ARG 36 -14.227 40.296 12.503 1.00 0.00 C ATOM 39 CD ARG 36 -14.518 40.505 11.010 1.00 0.00 C ATOM 40 NE ARG 36 -13.304 40.123 10.233 1.00 0.00 N ATOM 41 CZ ARG 36 -12.452 41.081 9.760 1.00 0.00 C ATOM 42 NH1 ARG 36 -12.689 42.400 10.014 1.00 0.00 N ATOM 43 NH2 ARG 36 -11.361 40.715 9.024 1.00 0.00 N ATOM 44 C ARG 36 -12.567 39.943 14.962 1.00 0.00 C ATOM 45 O ARG 36 -13.236 39.025 15.433 1.00 0.00 O ATOM 46 N GLN 37 -11.250 39.822 14.742 1.00 0.00 N ATOM 47 CA GLN 37 -10.578 38.574 14.936 1.00 0.00 C ATOM 48 CB GLN 37 -9.086 38.661 14.566 1.00 0.00 C ATOM 49 CG GLN 37 -8.312 37.355 14.749 1.00 0.00 C ATOM 50 CD GLN 37 -6.869 37.617 14.339 1.00 0.00 C ATOM 51 OE1 GLN 37 -5.999 37.857 15.176 1.00 0.00 O ATOM 52 NE2 GLN 37 -6.604 37.575 13.006 1.00 0.00 N ATOM 53 C GLN 37 -10.687 38.215 16.383 1.00 0.00 C ATOM 54 O GLN 37 -10.883 37.051 16.730 1.00 0.00 O ATOM 55 N ARG 38 -10.581 39.222 17.265 1.00 0.00 N ATOM 56 CA ARG 38 -10.598 38.983 18.678 1.00 0.00 C ATOM 57 CB ARG 38 -10.457 40.286 19.479 1.00 0.00 C ATOM 58 CG ARG 38 -9.042 40.861 19.472 1.00 0.00 C ATOM 59 CD ARG 38 -8.972 42.326 19.917 1.00 0.00 C ATOM 60 NE ARG 38 -10.015 42.537 20.961 1.00 0.00 N ATOM 61 CZ ARG 38 -10.004 43.659 21.740 1.00 0.00 C ATOM 62 NH1 ARG 38 -8.993 44.568 21.614 1.00 0.00 N ATOM 63 NH2 ARG 38 -11.002 43.872 22.646 1.00 0.00 N ATOM 64 C ARG 38 -11.891 38.356 19.085 1.00 0.00 C ATOM 65 O ARG 38 -11.899 37.350 19.793 1.00 0.00 O ATOM 66 N ASP 39 -13.028 38.915 18.637 1.00 0.00 N ATOM 67 CA ASP 39 -14.268 38.373 19.108 1.00 0.00 C ATOM 68 CB ASP 39 -15.511 39.190 18.703 1.00 0.00 C ATOM 69 CG ASP 39 -15.666 39.195 17.191 1.00 0.00 C ATOM 70 OD1 ASP 39 -16.275 38.233 16.652 1.00 0.00 O ATOM 71 OD2 ASP 39 -15.197 40.177 16.557 1.00 0.00 O ATOM 72 C ASP 39 -14.416 36.976 18.605 1.00 0.00 C ATOM 73 O ASP 39 -14.880 36.095 19.328 1.00 0.00 O ATOM 74 N ALA 40 -14.001 36.735 17.351 1.00 0.00 N ATOM 75 CA ALA 40 -14.136 35.445 16.745 1.00 0.00 C ATOM 76 CB ALA 40 -13.662 35.419 15.282 1.00 0.00 C ATOM 77 C ALA 40 -13.322 34.446 17.504 1.00 0.00 C ATOM 78 O ALA 40 -13.759 33.317 17.713 1.00 0.00 O ATOM 79 N LEU 41 -12.116 34.837 17.952 1.00 0.00 N ATOM 80 CA LEU 41 -11.235 33.904 18.591 1.00 0.00 C ATOM 81 CB LEU 41 -9.906 34.575 19.021 1.00 0.00 C ATOM 82 CG LEU 41 -8.775 33.668 19.576 1.00 0.00 C ATOM 83 CD1 LEU 41 -7.550 34.525 19.937 1.00 0.00 C ATOM 84 CD2 LEU 41 -9.200 32.792 20.769 1.00 0.00 C ATOM 85 C LEU 41 -11.913 33.371 19.815 1.00 0.00 C ATOM 86 O LEU 41 -11.926 32.163 20.044 1.00 0.00 O ATOM 87 N ILE 42 -12.504 34.256 20.633 1.00 0.00 N ATOM 88 CA ILE 42 -13.083 33.809 21.865 1.00 0.00 C ATOM 89 CB ILE 42 -13.562 34.957 22.708 1.00 0.00 C ATOM 90 CG2 ILE 42 -14.332 34.389 23.912 1.00 0.00 C ATOM 91 CG1 ILE 42 -12.373 35.854 23.090 1.00 0.00 C ATOM 92 CD1 ILE 42 -12.781 37.216 23.646 1.00 0.00 C ATOM 93 C ILE 42 -14.259 32.916 21.614 1.00 0.00 C ATOM 94 O ILE 42 -14.316 31.796 22.118 1.00 0.00 O ATOM 95 N ASP 43 -15.210 33.361 20.775 1.00 0.00 N ATOM 96 CA ASP 43 -16.413 32.600 20.598 1.00 0.00 C ATOM 97 CB ASP 43 -17.401 33.286 19.633 1.00 0.00 C ATOM 98 CG ASP 43 -18.754 32.584 19.690 1.00 0.00 C ATOM 99 OD1 ASP 43 -18.794 31.371 20.028 1.00 0.00 O ATOM 100 OD2 ASP 43 -19.776 33.261 19.393 1.00 0.00 O ATOM 101 C ASP 43 -16.058 31.265 20.034 1.00 0.00 C ATOM 102 O ASP 43 -16.562 30.237 20.482 1.00 0.00 O ATOM 103 N GLU 44 -15.156 31.249 19.039 1.00 0.00 N ATOM 104 CA GLU 44 -14.798 30.022 18.399 1.00 0.00 C ATOM 105 CB GLU 44 -13.809 30.217 17.236 1.00 0.00 C ATOM 106 CG GLU 44 -14.434 30.870 16.002 1.00 0.00 C ATOM 107 CD GLU 44 -13.354 30.997 14.937 1.00 0.00 C ATOM 108 OE1 GLU 44 -12.330 31.671 15.225 1.00 0.00 O ATOM 109 OE2 GLU 44 -13.537 30.426 13.826 1.00 0.00 O ATOM 110 C GLU 44 -14.154 29.121 19.400 1.00 0.00 C ATOM 111 O GLU 44 -14.430 27.923 19.432 1.00 0.00 O ATOM 112 N LEU 45 -13.299 29.683 20.273 1.00 0.00 N ATOM 113 CA LEU 45 -12.581 28.854 21.191 1.00 0.00 C ATOM 114 CB LEU 45 -11.659 29.661 22.122 1.00 0.00 C ATOM 115 CG LEU 45 -10.874 28.787 23.119 1.00 0.00 C ATOM 116 CD1 LEU 45 -9.815 27.930 22.406 1.00 0.00 C ATOM 117 CD2 LEU 45 -10.294 29.623 24.270 1.00 0.00 C ATOM 118 C LEU 45 -13.558 28.134 22.058 1.00 0.00 C ATOM 119 O LEU 45 -13.464 26.923 22.237 1.00 0.00 O ATOM 120 N GLU 46 -14.562 28.850 22.586 1.00 0.00 N ATOM 121 CA GLU 46 -15.460 28.230 23.515 1.00 0.00 C ATOM 122 CB GLU 46 -16.512 29.208 24.062 1.00 0.00 C ATOM 123 CG GLU 46 -15.906 30.321 24.920 1.00 0.00 C ATOM 124 CD GLU 46 -15.304 29.678 26.161 1.00 0.00 C ATOM 125 OE1 GLU 46 -15.500 28.447 26.348 1.00 0.00 O ATOM 126 OE2 GLU 46 -14.639 30.410 26.941 1.00 0.00 O ATOM 127 C GLU 46 -16.193 27.121 22.837 1.00 0.00 C ATOM 128 O GLU 46 -16.334 26.031 23.389 1.00 0.00 O ATOM 129 N LEU 47 -16.652 27.368 21.603 1.00 0.00 N ATOM 130 CA LEU 47 -17.441 26.407 20.898 1.00 0.00 C ATOM 131 CB LEU 47 -17.875 26.934 19.520 1.00 0.00 C ATOM 132 CG LEU 47 -18.666 28.255 19.581 1.00 0.00 C ATOM 133 CD1 LEU 47 -19.081 28.721 18.176 1.00 0.00 C ATOM 134 CD2 LEU 47 -19.854 28.157 20.549 1.00 0.00 C ATOM 135 C LEU 47 -16.624 25.176 20.658 1.00 0.00 C ATOM 136 O LEU 47 -17.084 24.061 20.899 1.00 0.00 O ATOM 137 N GLU 48 -15.373 25.354 20.193 1.00 0.00 N ATOM 138 CA GLU 48 -14.553 24.234 19.841 1.00 0.00 C ATOM 139 CB GLU 48 -13.212 24.650 19.213 1.00 0.00 C ATOM 140 CG GLU 48 -12.325 25.463 20.156 1.00 0.00 C ATOM 141 CD GLU 48 -11.043 25.798 19.407 1.00 0.00 C ATOM 142 OE1 GLU 48 -11.048 25.701 18.151 1.00 0.00 O ATOM 143 OE2 GLU 48 -10.040 26.163 20.078 1.00 0.00 O ATOM 144 C GLU 48 -14.248 23.422 21.054 1.00 0.00 C ATOM 145 O GLU 48 -14.324 22.194 21.019 1.00 0.00 O ATOM 146 N LEU 49 -13.907 24.087 22.174 1.00 0.00 N ATOM 147 CA LEU 49 -13.532 23.345 23.341 1.00 0.00 C ATOM 148 CB LEU 49 -13.049 24.216 24.516 1.00 0.00 C ATOM 149 CG LEU 49 -11.581 24.672 24.405 1.00 0.00 C ATOM 150 CD1 LEU 49 -11.314 25.477 23.125 1.00 0.00 C ATOM 151 CD2 LEU 49 -11.142 25.420 25.673 1.00 0.00 C ATOM 152 C LEU 49 -14.677 22.518 23.819 1.00 0.00 C ATOM 153 O LEU 49 -14.500 21.345 24.146 1.00 0.00 O ATOM 154 N ASP 50 -15.891 23.091 23.859 1.00 0.00 N ATOM 155 CA ASP 50 -16.981 22.337 24.405 1.00 0.00 C ATOM 156 CB ASP 50 -18.272 23.163 24.587 1.00 0.00 C ATOM 157 CG ASP 50 -18.780 23.679 23.248 1.00 0.00 C ATOM 158 OD1 ASP 50 -19.347 22.871 22.465 1.00 0.00 O ATOM 159 OD2 ASP 50 -18.627 24.906 23.003 1.00 0.00 O ATOM 160 C ASP 50 -17.276 21.135 23.561 1.00 0.00 C ATOM 161 O ASP 50 -17.502 20.044 24.082 1.00 0.00 O ATOM 162 N GLN 51 -17.266 21.303 22.228 1.00 0.00 N ATOM 163 CA GLN 51 -17.622 20.233 21.342 1.00 0.00 C ATOM 164 CB GLN 51 -17.697 20.690 19.876 1.00 0.00 C ATOM 165 CG GLN 51 -18.465 19.717 18.982 1.00 0.00 C ATOM 166 CD GLN 51 -19.946 19.965 19.229 1.00 0.00 C ATOM 167 OE1 GLN 51 -20.316 20.987 19.807 1.00 0.00 O ATOM 168 NE2 GLN 51 -20.815 19.022 18.777 1.00 0.00 N ATOM 169 C GLN 51 -16.598 19.145 21.441 1.00 0.00 C ATOM 170 O GLN 51 -16.927 17.959 21.447 1.00 0.00 O ATOM 171 N LYS 52 -15.319 19.541 21.543 1.00 0.00 N ATOM 172 CA LYS 52 -14.206 18.638 21.580 1.00 0.00 C ATOM 173 CB LYS 52 -12.895 19.418 21.744 1.00 0.00 C ATOM 174 CG LYS 52 -11.634 18.563 21.796 1.00 0.00 C ATOM 175 CD LYS 52 -10.376 19.414 21.950 1.00 0.00 C ATOM 176 CE LYS 52 -10.395 20.268 23.223 1.00 0.00 C ATOM 177 NZ LYS 52 -9.151 21.061 23.329 1.00 0.00 N ATOM 178 C LYS 52 -14.338 17.748 22.775 1.00 0.00 C ATOM 179 O LYS 52 -14.146 16.537 22.684 1.00 0.00 O ATOM 180 N ASP 53 -14.699 18.330 23.933 1.00 0.00 N ATOM 181 CA ASP 53 -14.787 17.564 25.139 1.00 0.00 C ATOM 182 CB ASP 53 -15.180 18.415 26.357 1.00 0.00 C ATOM 183 CG ASP 53 -13.991 19.299 26.709 1.00 0.00 C ATOM 184 OD1 ASP 53 -12.908 19.102 26.095 1.00 0.00 O ATOM 185 OD2 ASP 53 -14.148 20.180 27.596 1.00 0.00 O ATOM 186 C ASP 53 -15.828 16.510 24.960 1.00 0.00 C ATOM 187 O ASP 53 -15.656 15.371 25.390 1.00 0.00 O ATOM 188 N GLU 54 -16.938 16.859 24.290 1.00 0.00 N ATOM 189 CA GLU 54 -17.995 15.907 24.137 1.00 0.00 C ATOM 190 CB GLU 54 -19.182 16.469 23.337 1.00 0.00 C ATOM 191 CG GLU 54 -19.886 17.639 24.029 1.00 0.00 C ATOM 192 CD GLU 54 -21.009 18.121 23.117 1.00 0.00 C ATOM 193 OE1 GLU 54 -21.263 17.445 22.084 1.00 0.00 O ATOM 194 OE2 GLU 54 -21.626 19.171 23.438 1.00 0.00 O ATOM 195 C GLU 54 -17.469 14.733 23.371 1.00 0.00 C ATOM 196 O GLU 54 -17.726 13.584 23.725 1.00 0.00 O ATOM 197 N LEU 55 -16.697 14.996 22.301 1.00 0.00 N ATOM 198 CA LEU 55 -16.215 13.938 21.457 1.00 0.00 C ATOM 199 CB LEU 55 -15.470 14.454 20.215 1.00 0.00 C ATOM 200 CG LEU 55 -14.965 13.324 19.296 1.00 0.00 C ATOM 201 CD1 LEU 55 -16.135 12.524 18.703 1.00 0.00 C ATOM 202 CD2 LEU 55 -13.999 13.852 18.221 1.00 0.00 C ATOM 203 C LEU 55 -15.274 13.049 22.207 1.00 0.00 C ATOM 204 O LEU 55 -15.359 11.824 22.114 1.00 0.00 O ATOM 205 N ILE 56 -14.370 13.638 23.005 1.00 0.00 N ATOM 206 CA ILE 56 -13.372 12.858 23.675 1.00 0.00 C ATOM 207 CB ILE 56 -12.484 13.692 24.552 1.00 0.00 C ATOM 208 CG2 ILE 56 -11.560 12.740 25.331 1.00 0.00 C ATOM 209 CG1 ILE 56 -11.734 14.744 23.717 1.00 0.00 C ATOM 210 CD1 ILE 56 -11.036 15.809 24.563 1.00 0.00 C ATOM 211 C ILE 56 -14.069 11.879 24.556 1.00 0.00 C ATOM 212 O ILE 56 -13.694 10.709 24.613 1.00 0.00 O ATOM 213 N GLN 57 -15.119 12.338 25.258 1.00 0.00 N ATOM 214 CA GLN 57 -15.834 11.477 26.147 1.00 0.00 C ATOM 215 CB GLN 57 -16.986 12.189 26.875 1.00 0.00 C ATOM 216 CG GLN 57 -17.737 11.271 27.841 1.00 0.00 C ATOM 217 CD GLN 57 -18.850 12.071 28.498 1.00 0.00 C ATOM 218 OE1 GLN 57 -19.567 12.826 27.838 1.00 0.00 O ATOM 219 NE2 GLN 57 -18.995 11.914 29.840 1.00 0.00 N ATOM 220 C GLN 57 -16.459 10.372 25.358 1.00 0.00 C ATOM 221 O GLN 57 -16.428 9.215 25.770 1.00 0.00 O ATOM 222 N MET 58 -17.031 10.704 24.187 1.00 0.00 N ATOM 223 CA MET 58 -17.750 9.730 23.418 1.00 0.00 C ATOM 224 CB MET 58 -18.277 10.324 22.103 1.00 0.00 C ATOM 225 CG MET 58 -19.055 9.339 21.231 1.00 0.00 C ATOM 226 SD MET 58 -19.199 9.852 19.493 1.00 0.00 S ATOM 227 CE MET 58 -19.650 11.565 19.893 1.00 0.00 C ATOM 228 C MET 58 -16.837 8.615 23.022 1.00 0.00 C ATOM 229 O MET 58 -17.146 7.443 23.230 1.00 0.00 O ATOM 230 N LEU 59 -15.663 8.957 22.469 1.00 0.00 N ATOM 231 CA LEU 59 -14.787 7.941 21.969 1.00 0.00 C ATOM 232 CB LEU 59 -13.545 8.511 21.267 1.00 0.00 C ATOM 233 CG LEU 59 -12.597 7.420 20.732 1.00 0.00 C ATOM 234 CD1 LEU 59 -13.295 6.530 19.694 1.00 0.00 C ATOM 235 CD2 LEU 59 -11.283 8.026 20.213 1.00 0.00 C ATOM 236 C LEU 59 -14.305 7.080 23.091 1.00 0.00 C ATOM 237 O LEU 59 -14.316 5.854 22.994 1.00 0.00 O ATOM 238 N GLN 60 -13.892 7.707 24.206 1.00 0.00 N ATOM 239 CA GLN 60 -13.323 6.950 25.280 1.00 0.00 C ATOM 240 CB GLN 60 -12.776 7.839 26.406 1.00 0.00 C ATOM 241 CG GLN 60 -12.017 7.059 27.481 1.00 0.00 C ATOM 242 CD GLN 60 -11.417 8.070 28.446 1.00 0.00 C ATOM 243 OE1 GLN 60 -11.588 9.279 28.287 1.00 0.00 O ATOM 244 NE2 GLN 60 -10.690 7.566 29.479 1.00 0.00 N ATOM 245 C GLN 60 -14.357 6.033 25.853 1.00 0.00 C ATOM 246 O GLN 60 -14.067 4.884 26.181 1.00 0.00 O ATOM 247 N ASN 61 -15.603 6.519 25.968 1.00 0.00 N ATOM 248 CA ASN 61 -16.662 5.764 26.574 1.00 0.00 C ATOM 249 CB ASN 61 -17.987 6.548 26.593 1.00 0.00 C ATOM 250 CG ASN 61 -18.986 5.804 27.465 1.00 0.00 C ATOM 251 OD1 ASN 61 -19.217 4.607 27.298 1.00 0.00 O ATOM 252 ND2 ASN 61 -19.605 6.536 28.429 1.00 0.00 N ATOM 253 C ASN 61 -16.884 4.513 25.788 1.00 0.00 C ATOM 254 O ASN 61 -17.059 3.436 26.356 1.00 0.00 O ATOM 255 N GLU 62 -16.860 4.625 24.450 1.00 0.00 N ATOM 256 CA GLU 62 -17.132 3.502 23.602 1.00 0.00 C ATOM 257 CB GLU 62 -17.083 3.880 22.116 1.00 0.00 C ATOM 258 CG GLU 62 -18.172 4.876 21.717 1.00 0.00 C ATOM 259 CD GLU 62 -17.926 5.274 20.270 1.00 0.00 C ATOM 260 OE1 GLU 62 -18.034 4.383 19.385 1.00 0.00 O ATOM 261 OE2 GLU 62 -17.623 6.474 20.036 1.00 0.00 O ATOM 262 C GLU 62 -16.094 2.452 23.828 1.00 0.00 C ATOM 263 O GLU 62 -16.408 1.267 23.924 1.00 0.00 O ATOM 264 N LEU 63 -14.821 2.864 23.933 1.00 0.00 N ATOM 265 CA LEU 63 -13.755 1.918 24.083 1.00 0.00 C ATOM 266 CB LEU 63 -12.380 2.600 24.110 1.00 0.00 C ATOM 267 CG LEU 63 -12.111 3.424 22.838 1.00 0.00 C ATOM 268 CD1 LEU 63 -10.673 3.971 22.806 1.00 0.00 C ATOM 269 CD2 LEU 63 -12.491 2.635 21.579 1.00 0.00 C ATOM 270 C LEU 63 -13.928 1.189 25.375 1.00 0.00 C ATOM 271 O LEU 63 -13.782 -0.032 25.432 1.00 0.00 O ATOM 272 N ASP 64 -14.270 1.923 26.450 1.00 0.00 N ATOM 273 CA ASP 64 -14.389 1.307 27.739 1.00 0.00 C ATOM 274 CB ASP 64 -14.747 2.305 28.858 1.00 0.00 C ATOM 275 CG ASP 64 -14.801 1.526 30.168 1.00 0.00 C ATOM 276 OD1 ASP 64 -14.205 0.418 30.216 1.00 0.00 O ATOM 277 OD2 ASP 64 -15.449 2.020 31.130 1.00 0.00 O ATOM 278 C ASP 64 -15.486 0.293 27.690 1.00 0.00 C ATOM 279 O ASP 64 -15.350 -0.812 28.211 1.00 0.00 O ATOM 280 N LYS 65 -16.599 0.642 27.027 1.00 0.00 N ATOM 281 CA LYS 65 -17.749 -0.208 26.994 1.00 0.00 C ATOM 282 CB LYS 65 -18.903 0.425 26.203 1.00 0.00 C ATOM 283 CG LYS 65 -20.188 -0.398 26.238 1.00 0.00 C ATOM 284 CD LYS 65 -21.406 0.347 25.690 1.00 0.00 C ATOM 285 CE LYS 65 -22.690 -0.484 25.705 1.00 0.00 C ATOM 286 NZ LYS 65 -23.794 0.281 25.083 1.00 0.00 N ATOM 287 C LYS 65 -17.397 -1.498 26.330 1.00 0.00 C ATOM 288 O LYS 65 -17.782 -2.567 26.801 1.00 0.00 O ATOM 289 N TYR 66 -16.627 -1.435 25.231 1.00 0.00 N ATOM 290 CA TYR 66 -16.328 -2.625 24.489 1.00 0.00 C ATOM 291 CB TYR 66 -15.473 -2.360 23.238 1.00 0.00 C ATOM 292 CG TYR 66 -15.375 -3.644 22.487 1.00 0.00 C ATOM 293 CD1 TYR 66 -16.438 -4.074 21.726 1.00 0.00 C ATOM 294 CD2 TYR 66 -14.235 -4.411 22.534 1.00 0.00 C ATOM 295 CE1 TYR 66 -16.368 -5.250 21.022 1.00 0.00 C ATOM 296 CE2 TYR 66 -14.158 -5.589 21.830 1.00 0.00 C ATOM 297 CZ TYR 66 -15.227 -6.013 21.077 1.00 0.00 C ATOM 298 OH TYR 66 -15.152 -7.221 20.356 1.00 0.00 O ATOM 299 C TYR 66 -15.563 -3.559 25.371 1.00 0.00 C ATOM 300 O TYR 66 -15.832 -4.759 25.404 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 300 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 12.81 98.5 68 70.8 96 ARMSMC SECONDARY STRUCTURE . . 12.91 98.5 67 72.8 92 ARMSMC SURFACE . . . . . . . . 12.81 98.5 68 70.8 96 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.95 32.4 34 73.9 46 ARMSSC1 RELIABLE SIDE CHAINS . 89.95 32.4 34 73.9 46 ARMSSC1 SECONDARY STRUCTURE . . 89.84 33.3 33 75.0 44 ARMSSC1 SURFACE . . . . . . . . 89.95 32.4 34 73.9 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.38 38.2 34 75.6 45 ARMSSC2 RELIABLE SIDE CHAINS . 75.43 40.0 25 75.8 33 ARMSSC2 SECONDARY STRUCTURE . . 79.54 36.4 33 76.7 43 ARMSSC2 SURFACE . . . . . . . . 78.38 38.2 34 75.6 45 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.86 37.5 16 72.7 22 ARMSSC3 RELIABLE SIDE CHAINS . 69.42 41.7 12 75.0 16 ARMSSC3 SECONDARY STRUCTURE . . 73.86 37.5 16 76.2 21 ARMSSC3 SURFACE . . . . . . . . 73.86 37.5 16 72.7 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.89 75.0 4 57.1 7 ARMSSC4 RELIABLE SIDE CHAINS . 89.89 75.0 4 57.1 7 ARMSSC4 SECONDARY STRUCTURE . . 89.89 75.0 4 66.7 6 ARMSSC4 SURFACE . . . . . . . . 89.89 75.0 4 57.1 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.98 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.98 35 71.4 49 CRMSCA CRN = ALL/NP . . . . . 0.0566 CRMSCA SECONDARY STRUCTURE . . 1.99 34 73.9 46 CRMSCA SURFACE . . . . . . . . 1.98 35 71.4 49 CRMSCA BURIED . . . . . . . . 0.00 0 0.0 0 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.96 175 71.7 244 CRMSMC SECONDARY STRUCTURE . . 1.96 170 73.9 230 CRMSMC SURFACE . . . . . . . . 1.96 175 71.7 244 CRMSMC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.90 160 72.4 221 CRMSSC RELIABLE SIDE CHAINS . 3.83 134 72.4 185 CRMSSC SECONDARY STRUCTURE . . 3.93 152 73.8 206 CRMSSC SURFACE . . . . . . . . 3.90 160 72.4 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.11 300 71.9 417 CRMSALL SECONDARY STRUCTURE . . 3.12 288 73.8 390 CRMSALL SURFACE . . . . . . . . 3.11 300 71.9 417 CRMSALL BURIED . . . . . . . . 0.00 0 0.0 0 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.732 1.000 0.500 35 71.4 49 ERRCA SECONDARY STRUCTURE . . 1.731 1.000 0.500 34 73.9 46 ERRCA SURFACE . . . . . . . . 1.732 1.000 0.500 35 71.4 49 ERRCA BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.705 1.000 0.500 175 71.7 244 ERRMC SECONDARY STRUCTURE . . 1.698 1.000 0.500 170 73.9 230 ERRMC SURFACE . . . . . . . . 1.705 1.000 0.500 175 71.7 244 ERRMC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.316 1.000 0.500 160 72.4 221 ERRSC RELIABLE SIDE CHAINS . 3.212 1.000 0.500 134 72.4 185 ERRSC SECONDARY STRUCTURE . . 3.331 1.000 0.500 152 73.8 206 ERRSC SURFACE . . . . . . . . 3.316 1.000 0.500 160 72.4 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.524 1.000 0.500 300 71.9 417 ERRALL SECONDARY STRUCTURE . . 2.519 1.000 0.500 288 73.8 390 ERRALL SURFACE . . . . . . . . 2.524 1.000 0.500 300 71.9 417 ERRALL BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 7 24 33 34 35 35 49 DISTCA CA (P) 14.29 48.98 67.35 69.39 71.43 49 DISTCA CA (RMS) 0.73 1.31 1.66 1.82 1.98 DISTCA ALL (N) 43 156 214 271 299 300 417 DISTALL ALL (P) 10.31 37.41 51.32 64.99 71.70 417 DISTALL ALL (RMS) 0.73 1.33 1.71 2.37 3.05 DISTALL END of the results output