####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 48 ( 192), selected 48 , name T0605AL396_1-D1 # Molecule2: number of CA atoms 49 ( 417), selected 48 , name T0605-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0605AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 35 - 55 4.92 22.20 LONGEST_CONTINUOUS_SEGMENT: 20 36 - 56 4.71 22.34 LONGEST_CONTINUOUS_SEGMENT: 20 37 - 57 4.91 21.94 LCS_AVERAGE: 38.44 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 39 - 52 1.22 27.59 LONGEST_CONTINUOUS_SEGMENT: 13 54 - 66 1.75 39.18 LCS_AVERAGE: 18.84 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 39 - 51 0.90 27.15 LONGEST_CONTINUOUS_SEGMENT: 12 40 - 52 0.96 28.29 LONGEST_CONTINUOUS_SEGMENT: 12 55 - 66 0.42 40.91 LCS_AVERAGE: 16.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 48 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT R 18 R 18 3 4 16 0 0 3 4 4 6 8 8 11 11 11 14 15 18 22 22 22 22 23 25 LCS_GDT G 19 G 19 3 4 17 0 3 3 4 5 6 8 8 11 11 11 14 15 19 22 22 22 23 25 25 LCS_GDT S 20 S 20 3 4 17 0 3 4 7 7 7 8 11 12 14 17 17 18 19 22 23 24 24 25 26 LCS_GDT L 21 L 21 3 4 17 0 3 4 7 7 7 8 11 13 14 17 17 18 19 22 23 24 24 25 26 LCS_GDT R 22 R 22 3 4 17 1 3 4 7 7 7 9 11 13 14 17 17 18 19 22 23 24 24 25 26 LCS_GDT D 23 D 23 3 4 17 1 3 4 4 5 7 9 10 13 14 17 17 18 19 22 23 24 24 25 26 LCS_GDT L 24 L 24 3 4 17 3 3 4 4 5 7 9 11 13 14 17 17 18 19 22 23 24 24 25 26 LCS_GDT Q 25 Q 25 4 6 17 3 3 4 5 6 7 9 10 13 14 17 17 18 19 22 23 24 24 25 26 LCS_GDT Y 26 Y 26 4 6 17 3 3 4 5 6 7 9 11 13 14 17 17 18 19 22 23 24 24 25 27 LCS_GDT A 27 A 27 4 6 17 3 3 4 5 6 7 9 10 11 14 17 17 18 19 22 23 24 24 25 27 LCS_GDT L 28 L 28 4 6 17 3 3 4 5 6 7 8 10 11 14 14 16 18 19 22 23 24 24 25 27 LCS_GDT Q 29 Q 29 4 6 17 3 3 4 5 6 7 9 10 13 14 17 17 18 19 22 23 24 24 25 26 LCS_GDT E 30 E 30 4 6 17 3 3 4 4 6 7 7 9 10 11 13 14 16 17 18 20 21 22 25 27 LCS_GDT K 31 K 31 4 5 17 3 3 4 4 6 7 7 9 10 11 13 14 16 17 18 20 23 23 24 27 LCS_GDT I 32 I 32 3 5 18 3 3 4 5 6 6 8 9 11 13 14 15 17 19 22 23 24 24 25 27 LCS_GDT E 33 E 33 3 5 19 3 3 4 4 5 6 9 11 11 14 17 17 18 19 22 23 24 24 25 27 LCS_GDT E 34 E 34 3 5 19 1 3 4 4 5 6 7 10 11 13 14 16 18 19 22 22 24 24 25 27 LCS_GDT L 35 L 35 3 4 20 3 3 4 4 5 7 9 10 13 14 17 17 18 19 22 23 24 24 25 27 LCS_GDT R 36 R 36 3 4 20 3 3 4 7 7 7 8 11 13 14 17 17 18 19 22 23 24 24 25 27 LCS_GDT Q 37 Q 37 3 4 20 3 3 4 7 8 10 10 13 14 15 17 17 18 19 22 23 24 24 25 27 LCS_GDT R 38 R 38 3 4 20 3 3 4 5 9 10 12 13 14 15 17 17 18 19 22 23 24 24 25 26 LCS_GDT D 39 D 39 12 13 20 1 7 11 12 12 13 13 13 14 15 17 17 18 19 22 23 24 24 25 27 LCS_GDT A 40 A 40 12 13 20 3 10 11 12 12 13 13 13 13 14 17 17 18 19 22 23 24 24 25 27 LCS_GDT I 42 I 42 12 13 20 8 10 11 12 12 13 13 13 14 15 17 17 18 19 22 23 24 24 25 27 LCS_GDT D 43 D 43 12 13 20 4 10 11 12 12 13 13 13 14 15 15 16 17 19 20 23 24 24 25 27 LCS_GDT E 44 E 44 12 13 20 8 10 11 12 12 13 13 13 14 15 15 16 17 18 20 23 24 24 25 27 LCS_GDT L 45 L 45 12 13 20 8 10 11 12 12 13 13 13 14 15 15 16 17 19 20 23 24 24 25 27 LCS_GDT E 46 E 46 12 13 20 8 10 11 12 12 13 13 13 14 15 15 16 17 18 20 23 24 24 25 27 LCS_GDT L 47 L 47 12 13 20 8 10 11 12 12 13 13 13 14 15 15 16 17 18 19 21 23 23 24 27 LCS_GDT E 48 E 48 12 13 20 8 10 11 12 12 13 13 13 14 15 15 16 17 18 19 21 23 23 24 27 LCS_GDT L 49 L 49 12 13 20 8 10 11 12 12 13 13 13 14 15 15 16 17 18 19 21 23 24 25 27 LCS_GDT D 50 D 50 12 13 20 8 10 11 12 12 13 13 13 14 15 15 16 17 18 19 21 23 23 24 27 LCS_GDT Q 51 Q 51 12 13 20 3 10 11 12 12 13 13 13 14 15 15 16 17 18 19 21 23 23 24 27 LCS_GDT K 52 K 52 12 13 20 3 4 6 12 12 13 13 14 14 14 15 16 17 18 19 21 23 23 24 27 LCS_GDT D 53 D 53 4 5 20 3 3 5 5 6 6 7 8 10 12 14 14 17 18 19 19 20 21 23 25 LCS_GDT E 54 E 54 4 13 20 3 3 4 5 9 11 13 14 14 15 15 16 17 18 19 20 22 23 24 25 LCS_GDT L 55 L 55 12 13 20 10 12 12 12 12 12 12 14 14 15 15 16 17 18 19 21 23 23 24 27 LCS_GDT I 56 I 56 12 13 20 10 12 12 12 12 12 13 14 14 14 15 16 17 18 19 21 23 23 24 27 LCS_GDT Q 57 Q 57 12 13 20 10 12 12 12 12 12 13 14 14 14 15 15 17 18 18 21 23 23 24 27 LCS_GDT M 58 M 58 12 13 19 10 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 20 21 22 LCS_GDT L 59 L 59 12 13 19 10 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_GDT Q 60 Q 60 12 13 19 10 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_GDT N 61 N 61 12 13 19 10 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_GDT E 62 E 62 12 13 19 10 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_GDT L 63 L 63 12 13 19 10 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_GDT D 64 D 64 12 13 19 10 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_GDT K 65 K 65 12 13 19 7 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_GDT Y 66 Y 66 12 13 19 4 12 12 12 12 12 13 14 14 14 15 15 16 18 18 18 19 19 20 20 LCS_AVERAGE LCS_A: 24.45 ( 16.07 18.84 38.44 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 12 12 12 13 13 14 14 15 17 17 18 19 22 23 24 24 25 27 GDT PERCENT_AT 20.41 24.49 24.49 24.49 24.49 26.53 26.53 28.57 28.57 30.61 34.69 34.69 36.73 38.78 44.90 46.94 48.98 48.98 51.02 55.10 GDT RMS_LOCAL 0.29 0.42 0.42 0.42 0.42 1.22 1.22 2.17 2.17 3.29 4.04 4.04 4.27 4.50 5.33 5.83 5.96 5.96 6.21 7.35 GDT RMS_ALL_AT 41.39 40.91 40.91 40.91 40.91 27.59 27.59 37.14 37.14 21.98 19.28 19.28 19.23 19.27 18.90 16.20 16.29 16.29 16.48 16.83 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA R 18 R 18 59.018 7 0.564 0.564 59.018 0.000 0.000 LGA G 19 G 19 57.539 0 0.453 0.453 58.509 0.000 0.000 LGA S 20 S 20 57.910 2 0.654 0.654 57.910 0.000 0.000 LGA L 21 L 21 59.448 4 0.641 0.641 60.817 0.000 0.000 LGA R 22 R 22 60.019 7 0.549 0.549 60.019 0.000 0.000 LGA D 23 D 23 56.771 4 0.624 0.624 58.472 0.000 0.000 LGA L 24 L 24 54.788 4 0.592 0.592 55.741 0.000 0.000 LGA Q 25 Q 25 56.545 5 0.244 0.244 57.010 0.000 0.000 LGA Y 26 Y 26 56.794 8 0.267 0.267 56.794 0.000 0.000 LGA A 27 A 27 55.430 1 0.131 0.131 55.800 0.000 0.000 LGA L 28 L 28 55.060 4 0.574 0.574 55.178 0.000 0.000 LGA Q 29 Q 29 51.618 5 0.198 0.198 53.448 0.000 0.000 LGA E 30 E 30 49.964 5 0.369 0.369 50.985 0.000 0.000 LGA K 31 K 31 52.080 5 0.186 0.186 52.080 0.000 0.000 LGA I 32 I 32 54.006 4 0.227 0.227 54.006 0.000 0.000 LGA E 33 E 33 51.102 5 0.593 0.593 51.995 0.000 0.000 LGA E 34 E 34 46.520 5 0.619 0.619 48.778 0.000 0.000 LGA L 35 L 35 44.092 4 0.617 0.617 45.043 0.000 0.000 LGA R 36 R 36 42.604 7 0.183 0.183 43.000 0.000 0.000 LGA Q 37 Q 37 41.936 5 0.589 0.589 42.062 0.000 0.000 LGA R 38 R 38 41.507 7 0.584 0.584 42.190 0.000 0.000 LGA D 39 D 39 39.804 4 0.594 0.594 41.132 0.000 0.000 LGA A 40 A 40 37.892 1 0.153 0.153 39.178 0.000 0.000 LGA I 42 I 42 31.067 4 0.139 0.139 33.128 0.000 0.000 LGA D 43 D 43 29.381 4 0.057 0.057 30.555 0.000 0.000 LGA E 44 E 44 25.728 5 0.069 0.069 27.629 0.000 0.000 LGA L 45 L 45 21.846 4 0.065 0.065 23.845 0.000 0.000 LGA E 46 E 46 19.932 5 0.018 0.018 21.146 0.000 0.000 LGA L 47 L 47 18.560 4 0.042 0.042 19.621 0.000 0.000 LGA E 48 E 48 12.995 5 0.040 0.040 15.405 0.714 0.317 LGA L 49 L 49 10.178 4 0.055 0.055 11.940 2.857 1.429 LGA D 50 D 50 11.791 4 0.137 0.137 11.791 0.000 0.000 LGA Q 51 Q 51 8.814 5 0.610 0.610 9.901 14.048 6.243 LGA K 52 K 52 4.130 5 0.203 0.203 5.465 28.929 12.857 LGA D 53 D 53 8.757 4 0.203 0.203 8.757 7.500 3.750 LGA E 54 E 54 4.328 5 0.603 0.603 5.829 41.667 18.519 LGA L 55 L 55 3.021 4 0.583 0.583 3.021 61.429 30.714 LGA I 56 I 56 2.735 4 0.106 0.106 2.927 60.952 30.476 LGA Q 57 Q 57 1.920 5 0.010 0.010 2.120 72.976 32.434 LGA M 58 M 58 1.424 4 0.031 0.031 1.633 81.548 40.774 LGA L 59 L 59 1.354 4 0.061 0.061 1.429 85.952 42.976 LGA Q 60 Q 60 0.577 5 0.086 0.086 0.892 95.238 42.328 LGA N 61 N 61 0.209 4 0.051 0.051 0.409 100.000 50.000 LGA E 62 E 62 0.549 5 0.078 0.078 1.125 90.595 40.265 LGA L 63 L 63 0.638 4 0.061 0.061 0.984 90.476 45.238 LGA D 64 D 64 0.787 4 0.033 0.033 1.374 90.595 45.298 LGA K 65 K 65 1.013 5 0.024 0.024 1.813 81.548 36.243 LGA Y 66 Y 66 1.823 8 0.043 0.043 2.268 72.976 24.325 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 48 192 192 100.00 409 192 46.94 49 SUMMARY(RMSD_GDC): 12.812 12.821 12.821 22.041 10.290 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 48 49 4.0 14 2.17 31.122 27.006 0.616 LGA_LOCAL RMSD: 2.171 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 37.138 Number of assigned atoms: 48 Std_ASGN_ATOMS RMSD: 12.812 Standard rmsd on all 48 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.135951 * X + -0.355728 * Y + 0.924649 * Z + -9.432502 Y_new = -0.108778 * X + -0.922311 * Y + -0.370822 * Z + 1.072575 Z_new = 0.984726 * X + -0.150995 * Y + 0.086694 * Z + 29.415159 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.466775 -1.395792 -1.049600 [DEG: -141.3358 -79.9730 -60.1377 ] ZXZ: 1.189393 1.483994 1.722948 [DEG: 68.1472 85.0266 98.7177 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0605AL396_1-D1 REMARK 2: T0605-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0605AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 48 49 4.0 14 2.17 27.006 12.81 REMARK ---------------------------------------------------------- MOLECULE T0605AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1rw2_A ATOM 53 N ARG 18 15.964 13.645 -3.619 1.00 0.00 N ATOM 54 CA ARG 18 16.819 13.951 -2.486 1.00 0.00 C ATOM 55 C ARG 18 16.210 13.520 -1.167 1.00 0.00 C ATOM 56 O ARG 18 15.624 14.334 -0.451 1.00 0.00 O ATOM 57 N GLY 19 16.346 12.237 -0.846 1.00 0.00 N ATOM 58 CA GLY 19 15.801 11.719 0.396 1.00 0.00 C ATOM 59 C GLY 19 15.067 10.407 0.204 1.00 0.00 C ATOM 60 O GLY 19 14.778 10.011 -0.927 1.00 0.00 O ATOM 61 N SER 20 14.765 9.730 1.308 1.00 0.00 N ATOM 62 CA SER 20 14.061 8.456 1.256 1.00 0.00 C ATOM 63 C SER 20 12.592 8.655 0.893 1.00 0.00 C ATOM 64 O SER 20 12.003 9.689 1.206 1.00 0.00 O ATOM 65 N LEU 21 12.011 7.659 0.229 1.00 0.00 N ATOM 66 CA LEU 21 10.611 7.729 -0.178 1.00 0.00 C ATOM 67 C LEU 21 10.021 6.335 -0.372 1.00 0.00 C ATOM 68 O LEU 21 10.666 5.453 -0.940 1.00 0.00 O ATOM 69 N ARG 22 8.792 6.149 0.102 1.00 0.00 N ATOM 70 CA ARG 22 8.107 4.865 -0.016 1.00 0.00 C ATOM 71 C ARG 22 6.640 5.006 0.385 1.00 0.00 C ATOM 72 O ARG 22 6.120 6.117 0.479 1.00 0.00 O ATOM 73 N ASP 23 5.974 3.879 0.620 1.00 0.00 N ATOM 74 CA ASP 23 4.570 3.893 1.011 1.00 0.00 C ATOM 75 C ASP 23 4.419 4.295 2.474 1.00 0.00 C ATOM 76 O ASP 23 5.284 4.002 3.300 1.00 0.00 O ATOM 77 N LEU 24 3.316 4.968 2.785 1.00 0.00 N ATOM 78 CA LEU 24 3.057 5.421 4.148 1.00 0.00 C ATOM 79 C LEU 24 2.112 4.472 4.879 1.00 0.00 C ATOM 80 O LEU 24 1.196 3.909 4.278 1.00 0.00 O ATOM 81 N GLN 25 2.346 4.302 6.180 1.00 0.00 N ATOM 82 CA GLN 25 1.523 3.428 7.013 1.00 0.00 C ATOM 83 C GLN 25 1.570 1.983 6.521 1.00 0.00 C ATOM 84 O GLN 25 2.361 1.179 7.015 1.00 0.00 O ATOM 85 N TYR 26 0.716 1.660 5.552 1.00 0.00 N ATOM 86 CA TYR 26 0.653 0.314 4.992 1.00 0.00 C ATOM 87 C TYR 26 0.282 -0.710 6.061 1.00 0.00 C ATOM 88 O TYR 26 0.410 -1.916 5.849 1.00 0.00 O ATOM 89 N ALA 27 -0.185 -0.222 7.207 1.00 0.00 N ATOM 90 CA ALA 27 -0.577 -1.095 8.307 1.00 0.00 C ATOM 91 C ALA 27 -2.068 -1.413 8.228 1.00 0.00 C ATOM 92 O ALA 27 -2.457 -2.554 7.973 1.00 0.00 O ATOM 93 N LEU 28 -2.896 -0.398 8.451 1.00 0.00 N ATOM 94 CA LEU 28 -4.343 -0.567 8.401 1.00 0.00 C ATOM 95 C LEU 28 -5.032 0.726 7.981 1.00 0.00 C ATOM 96 O LEU 28 -5.309 1.591 8.811 1.00 0.00 O ATOM 97 N GLN 29 -5.302 0.854 6.685 1.00 0.00 N ATOM 98 CA GLN 29 -5.959 2.044 6.157 1.00 0.00 C ATOM 99 C GLN 29 -7.458 1.811 5.995 1.00 0.00 C ATOM 100 O GLN 29 -8.261 2.325 6.775 1.00 0.00 O ATOM 101 N GLU 30 -7.827 1.037 4.979 1.00 0.00 N ATOM 102 CA GLU 30 -9.230 0.743 4.743 1.00 0.00 C ATOM 103 C GLU 30 -9.808 -0.164 5.808 1.00 0.00 C ATOM 104 O GLU 30 -9.865 0.203 6.981 1.00 0.00 O ATOM 105 N LYS 31 -10.236 -1.356 5.404 1.00 0.00 N ATOM 106 CA LYS 31 -10.798 -2.319 6.343 1.00 0.00 C ATOM 107 C LYS 31 -9.702 -2.892 7.232 1.00 0.00 C ATOM 108 O LYS 31 -9.543 -2.479 8.381 1.00 0.00 O ATOM 109 N ILE 32 -8.945 -3.840 6.684 1.00 0.00 N ATOM 110 CA ILE 32 -7.855 -4.479 7.415 1.00 0.00 C ATOM 111 C ILE 32 -8.320 -4.985 8.776 1.00 0.00 C ATOM 112 O ILE 32 -8.808 -6.108 8.897 1.00 0.00 O ATOM 113 N GLU 33 -8.166 -4.151 9.803 1.00 0.00 N ATOM 114 CA GLU 33 -8.570 -4.520 11.148 1.00 0.00 C ATOM 115 C GLU 33 -8.822 -3.279 12.000 1.00 0.00 C ATOM 116 O GLU 33 -8.693 -2.153 11.523 1.00 0.00 O ATOM 117 N GLU 34 -9.186 -3.494 13.259 1.00 0.00 N ATOM 118 CA GLU 34 -9.456 -2.393 14.175 1.00 0.00 C ATOM 119 C GLU 34 -8.248 -2.108 15.060 1.00 0.00 C ATOM 120 O GLU 34 -7.352 -2.943 15.187 1.00 0.00 O ATOM 121 N LEU 35 -8.234 -0.923 15.667 1.00 0.00 N ATOM 122 CA LEU 35 -7.142 -0.510 16.547 1.00 0.00 C ATOM 123 C LEU 35 -5.833 -0.361 15.776 1.00 0.00 C ATOM 124 O LEU 35 -5.435 -1.251 15.025 1.00 0.00 O ATOM 125 N ARG 36 -5.167 0.774 15.968 1.00 0.00 N ATOM 126 CA ARG 36 -3.910 1.023 15.287 1.00 0.00 C ATOM 127 C ARG 36 -2.803 0.107 15.768 1.00 0.00 C ATOM 128 O ARG 36 -2.458 -0.867 15.095 1.00 0.00 O ATOM 129 N GLN 37 -2.245 0.417 16.934 1.00 0.00 N ATOM 130 CA GLN 37 -1.171 -0.384 17.507 1.00 0.00 C ATOM 131 C GLN 37 -1.380 -0.585 19.004 1.00 0.00 C ATOM 132 O GLN 37 -1.154 0.331 19.793 1.00 0.00 O ATOM 133 N ARG 38 -1.821 -1.790 19.373 1.00 0.00 N ATOM 134 CA ARG 38 -2.074 -2.159 20.771 1.00 0.00 C ATOM 135 C ARG 38 -2.957 -1.136 21.493 1.00 0.00 C ATOM 136 O ARG 38 -3.272 -0.077 20.955 1.00 0.00 O ATOM 137 N ASP 39 -3.366 -1.480 22.712 1.00 0.00 N ATOM 138 CA ASP 39 -4.209 -0.609 23.527 1.00 0.00 C ATOM 139 C ASP 39 -5.548 -0.337 22.856 1.00 0.00 C ATOM 140 O ASP 39 -5.614 0.399 21.871 1.00 0.00 O ATOM 141 N ALA 40 -6.639 -0.924 23.371 1.00 0.00 N ATOM 142 CA ALA 40 -7.966 -0.707 22.811 1.00 0.00 C ATOM 143 C ALA 40 -8.535 0.632 23.252 1.00 0.00 C ATOM 144 O ALA 40 -9.558 1.092 22.744 1.00 0.00 O ATOM 145 N ILE 42 -7.851 1.248 24.210 1.00 0.00 N ATOM 146 CA ILE 42 -8.260 2.533 24.749 1.00 0.00 C ATOM 147 C ILE 42 -7.748 3.682 23.888 1.00 0.00 C ATOM 148 O ILE 42 -8.256 4.798 23.965 1.00 0.00 O ATOM 149 N ASP 43 -6.741 3.406 23.062 1.00 0.00 N ATOM 150 CA ASP 43 -6.170 4.433 22.199 1.00 0.00 C ATOM 151 C ASP 43 -7.248 5.078 21.335 1.00 0.00 C ATOM 152 O ASP 43 -7.151 6.256 20.994 1.00 0.00 O ATOM 153 N GLU 44 -8.269 4.303 20.973 1.00 0.00 N ATOM 154 CA GLU 44 -9.366 4.832 20.174 1.00 0.00 C ATOM 155 C GLU 44 -10.032 5.968 20.935 1.00 0.00 C ATOM 156 O GLU 44 -10.113 7.098 20.445 1.00 0.00 O ATOM 157 N LEU 45 -10.499 5.660 22.144 1.00 0.00 N ATOM 158 CA LEU 45 -11.124 6.665 22.989 1.00 0.00 C ATOM 159 C LEU 45 -10.204 7.876 23.065 1.00 0.00 C ATOM 160 O LEU 45 -10.646 9.019 22.949 1.00 0.00 O ATOM 161 N GLU 46 -8.916 7.600 23.246 1.00 0.00 N ATOM 162 CA GLU 46 -7.914 8.647 23.330 1.00 0.00 C ATOM 163 C GLU 46 -7.915 9.482 22.062 1.00 0.00 C ATOM 164 O GLU 46 -7.711 10.695 22.101 1.00 0.00 O ATOM 165 N LEU 47 -8.133 8.820 20.934 1.00 0.00 N ATOM 166 CA LEU 47 -8.175 9.503 19.656 1.00 0.00 C ATOM 167 C LEU 47 -9.308 10.514 19.643 1.00 0.00 C ATOM 168 O LEU 47 -9.104 11.672 19.305 1.00 0.00 O ATOM 169 N GLU 48 -10.501 10.085 20.036 1.00 0.00 N ATOM 170 CA GLU 48 -11.649 10.988 20.049 1.00 0.00 C ATOM 171 C GLU 48 -11.446 12.142 21.029 1.00 0.00 C ATOM 172 O GLU 48 -11.838 13.273 20.743 1.00 0.00 O ATOM 173 N LEU 49 -10.836 11.868 22.182 1.00 0.00 N ATOM 174 CA LEU 49 -10.609 12.921 23.166 1.00 0.00 C ATOM 175 C LEU 49 -9.528 13.886 22.688 1.00 0.00 C ATOM 176 O LEU 49 -9.550 15.070 23.023 1.00 0.00 O ATOM 177 N ASP 50 -8.589 13.375 21.895 1.00 0.00 N ATOM 178 CA ASP 50 -7.508 14.198 21.367 1.00 0.00 C ATOM 179 C ASP 50 -7.900 14.785 20.013 1.00 0.00 C ATOM 180 O ASP 50 -7.250 15.701 19.510 1.00 0.00 O ATOM 181 N GLN 51 -8.974 14.250 19.433 1.00 0.00 N ATOM 182 CA GLN 51 -9.468 14.717 18.141 1.00 0.00 C ATOM 183 C GLN 51 -10.846 15.362 18.295 1.00 0.00 C ATOM 184 O GLN 51 -11.350 15.505 19.410 1.00 0.00 O ATOM 185 N LYS 52 -11.446 15.753 17.177 1.00 0.00 N ATOM 186 CA LYS 52 -12.767 16.381 17.189 1.00 0.00 C ATOM 187 C LYS 52 -13.862 15.321 17.137 1.00 0.00 C ATOM 188 O LYS 52 -15.053 15.633 17.198 1.00 0.00 O ATOM 189 N ASP 53 -13.436 14.073 17.015 1.00 0.00 N ATOM 190 CA ASP 53 -14.344 12.933 16.933 1.00 0.00 C ATOM 191 C ASP 53 -15.445 13.000 17.989 1.00 0.00 C ATOM 192 O ASP 53 -16.604 13.270 17.674 1.00 0.00 O ATOM 193 N GLU 54 -15.075 12.754 19.242 1.00 0.00 N ATOM 194 CA GLU 54 -16.033 12.769 20.342 1.00 0.00 C ATOM 195 C GLU 54 -15.479 13.479 21.568 1.00 0.00 C ATOM 196 O GLU 54 -14.281 13.748 21.658 1.00 0.00 O ATOM 197 N LEU 55 -16.365 13.784 22.511 1.00 0.00 N ATOM 198 CA LEU 55 -15.968 14.428 23.752 1.00 0.00 C ATOM 199 C LEU 55 -15.311 13.400 24.662 1.00 0.00 C ATOM 200 O LEU 55 -15.413 12.200 24.414 1.00 0.00 O ATOM 201 N ILE 56 -14.637 13.861 25.706 1.00 0.00 N ATOM 202 CA ILE 56 -13.976 12.945 26.627 1.00 0.00 C ATOM 203 C ILE 56 -14.981 11.977 27.243 1.00 0.00 C ATOM 204 O ILE 56 -14.608 10.920 27.750 1.00 0.00 O ATOM 205 N GLN 57 -16.258 12.335 27.182 1.00 0.00 N ATOM 206 CA GLN 57 -17.306 11.499 27.751 1.00 0.00 C ATOM 207 C GLN 57 -17.751 10.411 26.776 1.00 0.00 C ATOM 208 O GLN 57 -17.801 9.238 27.138 1.00 0.00 O ATOM 209 N MET 58 -18.075 10.796 25.545 1.00 0.00 N ATOM 210 CA MET 58 -18.501 9.830 24.534 1.00 0.00 C ATOM 211 C MET 58 -17.357 8.888 24.206 1.00 0.00 C ATOM 212 O MET 58 -17.562 7.703 23.949 1.00 0.00 O ATOM 213 N LEU 59 -16.152 9.435 24.214 1.00 0.00 N ATOM 214 CA LEU 59 -14.963 8.661 23.934 1.00 0.00 C ATOM 215 C LEU 59 -14.735 7.630 25.031 1.00 0.00 C ATOM 216 O LEU 59 -14.615 6.434 24.756 1.00 0.00 O ATOM 217 N GLN 60 -14.690 8.095 26.278 1.00 0.00 N ATOM 218 CA GLN 60 -14.500 7.190 27.401 1.00 0.00 C ATOM 219 C GLN 60 -15.666 6.220 27.449 1.00 0.00 C ATOM 220 O GLN 60 -15.525 5.079 27.884 1.00 0.00 O ATOM 221 N ASN 61 -16.817 6.692 26.981 1.00 0.00 N ATOM 222 CA ASN 61 -18.019 5.879 26.943 1.00 0.00 C ATOM 223 C ASN 61 -17.812 4.692 26.019 1.00 0.00 C ATOM 224 O ASN 61 -18.080 3.552 26.391 1.00 0.00 O ATOM 225 N GLU 62 -17.325 4.963 24.813 1.00 0.00 N ATOM 226 CA GLU 62 -17.065 3.907 23.848 1.00 0.00 C ATOM 227 C GLU 62 -15.956 2.999 24.356 1.00 0.00 C ATOM 228 O GLU 62 -15.911 1.814 24.024 1.00 0.00 O ATOM 229 N LEU 63 -15.053 3.562 25.157 1.00 0.00 N ATOM 230 CA LEU 63 -13.958 2.788 25.726 1.00 0.00 C ATOM 231 C LEU 63 -14.513 1.752 26.698 1.00 0.00 C ATOM 232 O LEU 63 -14.267 0.555 26.545 1.00 0.00 O ATOM 233 N ASP 64 -15.280 2.210 27.690 1.00 0.00 N ATOM 234 CA ASP 64 -15.861 1.300 28.666 1.00 0.00 C ATOM 235 C ASP 64 -16.842 0.361 27.969 1.00 0.00 C ATOM 236 O ASP 64 -16.979 -0.801 28.342 1.00 0.00 O ATOM 237 N LYS 65 -17.534 0.892 26.960 1.00 0.00 N ATOM 238 CA LYS 65 -18.497 0.109 26.189 1.00 0.00 C ATOM 239 C LYS 65 -17.799 -1.068 25.533 1.00 0.00 C ATOM 240 O LYS 65 -18.273 -2.204 25.593 1.00 0.00 O ATOM 241 N TYR 66 -16.667 -0.791 24.898 1.00 0.00 N ATOM 242 CA TYR 66 -15.884 -1.837 24.272 1.00 0.00 C ATOM 243 C TYR 66 -15.465 -2.813 25.361 1.00 0.00 C ATOM 244 O TYR 66 -15.426 -4.036 25.165 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 192 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.50 53.3 92 95.8 96 ARMSMC SECONDARY STRUCTURE . . 76.85 53.4 88 95.7 92 ARMSMC SURFACE . . . . . . . . 77.50 53.3 92 95.8 96 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.81 (Number of atoms: 48) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.81 48 98.0 49 CRMSCA CRN = ALL/NP . . . . . 0.2669 CRMSCA SECONDARY STRUCTURE . . 12.23 45 97.8 46 CRMSCA SURFACE . . . . . . . . 12.81 48 98.0 49 CRMSCA BURIED . . . . . . . . 0.00 0 0.0 0 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.83 192 78.7 244 CRMSMC SECONDARY STRUCTURE . . 12.25 180 78.3 230 CRMSMC SURFACE . . . . . . . . 12.83 192 78.7 244 CRMSMC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 221 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 185 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 206 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 221 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 0 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.83 192 46.0 417 CRMSALL SECONDARY STRUCTURE . . 12.25 180 46.2 390 CRMSALL SURFACE . . . . . . . . 12.83 192 46.0 417 CRMSALL BURIED . . . . . . . . 0.00 0 0.0 0 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.893 1.000 0.500 48 98.0 49 ERRCA SECONDARY STRUCTURE . . 11.470 1.000 0.500 45 97.8 46 ERRCA SURFACE . . . . . . . . 11.893 1.000 0.500 48 98.0 49 ERRCA BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.802 1.000 0.500 192 78.7 244 ERRMC SECONDARY STRUCTURE . . 11.389 1.000 0.500 180 78.3 230 ERRMC SURFACE . . . . . . . . 11.802 1.000 0.500 192 78.7 244 ERRMC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 221 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 185 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 206 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 221 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.802 1.000 0.500 192 46.0 417 ERRALL SECONDARY STRUCTURE . . 11.389 1.000 0.500 180 46.2 390 ERRALL SURFACE . . . . . . . . 11.802 1.000 0.500 192 46.0 417 ERRALL BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 2 17 48 49 DISTCA CA (P) 0.00 0.00 2.04 4.08 34.69 49 DISTCA CA (RMS) 0.00 0.00 2.48 3.00 7.60 DISTCA ALL (N) 0 0 4 11 73 192 417 DISTALL ALL (P) 0.00 0.00 0.96 2.64 17.51 417 DISTALL ALL (RMS) 0.00 0.00 2.58 3.39 7.64 DISTALL END of the results output