####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 36 ( 269), selected 36 , name T0604TS358_1-D2 # Molecule2: number of CA atoms 249 ( 1906), selected 36 , name T0604-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0604TS358_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 107 - 142 1.55 1.55 LCS_AVERAGE: 14.46 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 107 - 142 1.55 1.55 LCS_AVERAGE: 14.46 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 108 - 142 0.99 1.61 LCS_AVERAGE: 13.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 36 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 107 T 107 4 36 36 3 4 4 4 4 5 22 31 33 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 108 E 108 35 36 36 3 4 4 12 29 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT R 109 R 109 35 36 36 3 21 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT P 110 P 110 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 111 I 111 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT V 112 V 112 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 113 I 113 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT G 114 G 114 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT F 115 F 115 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT G 116 G 116 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT P 117 P 117 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT C 118 C 118 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT G 119 G 119 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 120 L 120 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT F 121 F 121 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT A 122 A 122 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT G 123 G 123 35 36 36 15 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 124 L 124 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT V 125 V 125 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT L 126 L 126 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT A 127 A 127 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT Q 128 Q 128 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT M 129 M 129 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT G 130 G 130 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT F 131 F 131 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT N 132 N 132 35 36 36 4 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT P 133 P 133 35 36 36 17 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 134 I 134 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT I 135 I 135 35 36 36 19 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT V 136 V 136 35 36 36 12 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 137 E 137 35 36 36 21 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT R 138 R 138 35 36 36 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT G 139 G 139 35 36 36 16 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT K 140 K 140 35 36 36 8 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT E 141 E 141 35 36 36 4 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_GDT V 142 V 142 35 36 36 5 22 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 LCS_AVERAGE LCS_A: 14.21 ( 13.71 14.46 14.46 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 23 32 33 34 34 34 35 35 35 36 36 36 36 36 36 36 36 36 36 36 GDT PERCENT_AT 9.24 12.85 13.25 13.65 13.65 13.65 14.06 14.06 14.06 14.46 14.46 14.46 14.46 14.46 14.46 14.46 14.46 14.46 14.46 14.46 GDT RMS_LOCAL 0.33 0.54 0.59 0.67 0.67 0.67 0.99 0.99 0.99 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 GDT RMS_ALL_AT 1.69 1.65 1.65 1.66 1.66 1.66 1.61 1.61 1.61 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 # Checking swapping # possible swapping detected: F 121 F 121 # possible swapping detected: F 131 F 131 # possible swapping detected: E 137 E 137 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 107 T 107 7.652 2 0.606 0.544 9.844 19.286 12.925 LGA E 108 E 108 4.191 4 0.114 0.128 6.333 39.762 19.577 LGA R 109 R 109 1.548 0 0.553 1.079 11.985 75.476 38.485 LGA P 110 P 110 0.615 0 0.065 0.236 1.237 97.619 90.680 LGA I 111 I 111 0.319 0 0.074 0.642 1.737 100.000 95.417 LGA V 112 V 112 0.270 0 0.029 0.083 0.413 100.000 100.000 LGA I 113 I 113 0.292 0 0.029 0.255 0.981 100.000 97.619 LGA G 114 G 114 0.195 0 0.057 0.057 0.271 100.000 100.000 LGA F 115 F 115 0.276 0 0.103 0.282 1.479 95.238 92.338 LGA G 116 G 116 0.511 0 0.076 0.076 0.511 97.619 97.619 LGA P 117 P 117 0.971 0 0.134 0.329 2.411 92.857 85.578 LGA C 118 C 118 0.862 0 0.014 0.733 2.277 90.476 86.190 LGA G 119 G 119 0.284 0 0.075 0.075 0.518 97.619 97.619 LGA L 120 L 120 0.417 0 0.069 0.891 1.922 95.238 90.833 LGA F 121 F 121 0.639 0 0.107 0.552 4.421 97.619 74.069 LGA A 122 A 122 0.335 0 0.062 0.063 0.635 97.619 98.095 LGA G 123 G 123 0.635 0 0.079 0.079 0.638 92.857 92.857 LGA L 124 L 124 0.807 0 0.042 0.061 1.217 90.476 87.083 LGA V 125 V 125 0.552 0 0.041 1.097 2.881 95.238 84.762 LGA L 126 L 126 0.195 0 0.053 0.073 0.486 100.000 100.000 LGA A 127 A 127 0.391 0 0.023 0.026 0.481 100.000 100.000 LGA Q 128 Q 128 0.544 0 0.054 0.154 0.840 92.857 92.593 LGA M 129 M 129 0.529 0 0.068 0.669 3.374 90.476 78.274 LGA G 130 G 130 0.563 0 0.037 0.037 0.563 95.238 95.238 LGA F 131 F 131 0.524 0 0.643 0.639 2.935 84.524 87.706 LGA N 132 N 132 0.614 0 0.283 1.130 2.863 92.857 85.298 LGA P 133 P 133 0.670 0 0.021 0.161 1.494 90.476 87.891 LGA I 134 I 134 0.625 0 0.060 1.351 4.245 90.476 76.429 LGA I 135 I 135 0.511 0 0.058 0.129 1.036 92.857 90.536 LGA V 136 V 136 0.575 0 0.107 0.967 2.302 92.857 85.646 LGA E 137 E 137 0.287 0 0.068 0.156 0.773 97.619 98.942 LGA R 138 R 138 0.222 0 0.032 1.138 6.006 100.000 78.095 LGA G 139 G 139 0.477 0 0.076 0.076 0.627 97.619 97.619 LGA K 140 K 140 1.011 0 0.036 0.806 3.998 88.214 73.069 LGA E 141 E 141 0.917 0 0.070 1.414 5.403 81.786 66.772 LGA V 142 V 142 2.004 0 0.503 0.409 3.518 65.238 60.884 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 36 144 144 100.00 262 262 100.00 249 SUMMARY(RMSD_GDC): 1.551 1.541 2.191 12.964 12.035 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 36 249 4.0 35 0.99 13.755 14.019 3.216 LGA_LOCAL RMSD: 0.988 Number of atoms: 35 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.605 Number of assigned atoms: 36 Std_ASGN_ATOMS RMSD: 1.551 Standard rmsd on all 36 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.077872 * X + -0.496949 * Y + 0.864279 * Z + 7.783772 Y_new = 0.020529 * X + 0.867527 * Y + 0.496967 * Z + 8.944107 Z_new = -0.996752 * X + -0.020957 * Y + 0.077758 * Z + 48.404816 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.257755 1.490177 -0.263267 [DEG: 14.7683 85.3809 -15.0841 ] ZXZ: 2.092636 1.492960 -1.591819 [DEG: 119.8992 85.5403 -91.2045 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0604TS358_1-D2 REMARK 2: T0604-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0604TS358_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 36 249 4.0 35 0.99 14.019 1.55 REMARK ---------------------------------------------------------- MOLECULE T0604TS358_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0604 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N THR 107 13.759 2.981 78.209 1.00 99.90 N ATOM 2 CA THR 107 14.712 3.549 79.179 1.00 99.90 C ATOM 3 C THR 107 16.092 3.822 78.541 1.00 99.90 C ATOM 4 O THR 107 16.706 2.933 77.951 1.00 99.90 O ATOM 5 CB THR 107 14.859 2.645 80.430 1.00 99.90 C ATOM 6 OG1 THR 107 15.683 3.299 81.399 1.00 99.90 O ATOM 7 CG2 THR 107 15.375 1.232 80.130 1.00 99.90 C ATOM 8 N GLU 108 16.468 5.097 78.494 1.00 99.90 N ATOM 9 CA GLU 108 17.684 5.499 77.766 1.00 99.90 C ATOM 10 C GLU 108 18.649 6.254 78.670 1.00 99.90 C ATOM 11 O GLU 108 18.229 7.044 79.511 1.00 99.90 O ATOM 12 CB GLU 108 17.298 6.358 76.556 1.00 99.90 C ATOM 13 CG GLU 108 16.414 5.572 75.583 1.00 99.90 C ATOM 14 CD GLU 108 15.849 6.435 74.454 1.00 99.90 C ATOM 15 OE1 GLU 108 15.486 7.595 74.748 1.00 99.90 O ATOM 16 OE2 GLU 108 15.693 5.883 73.348 1.00 99.90 O ATOM 17 N ARG 109 19.938 6.042 78.407 1.00 99.90 N ATOM 18 CA ARG 109 21.033 6.665 79.180 1.00 99.90 C ATOM 19 C ARG 109 21.008 8.210 79.018 1.00 99.90 C ATOM 20 O ARG 109 20.769 8.883 80.049 1.00 99.90 O ATOM 21 CB ARG 109 22.379 6.048 78.832 1.00 99.90 C ATOM 22 CG ARG 109 22.492 4.524 79.002 1.00 99.90 C ATOM 23 CD ARG 109 22.563 4.238 80.493 1.00 99.90 C ATOM 24 NE ARG 109 23.785 4.844 81.053 1.00 99.90 N ATOM 25 CZ ARG 109 25.003 4.307 81.013 1.00 99.90 C ATOM 26 NH1 ARG 109 25.205 3.137 80.425 1.00 99.90 H ATOM 27 NH2 ARG 109 26.029 4.927 81.582 1.00 99.90 H ATOM 28 N PRO 110 21.245 8.786 77.833 1.00 99.90 N ATOM 29 CA PRO 110 21.046 10.222 77.603 1.00 99.90 C ATOM 30 C PRO 110 19.979 10.456 76.516 1.00 99.90 C ATOM 31 O PRO 110 19.917 9.804 75.479 1.00 99.90 O ATOM 32 CB PRO 110 22.429 10.679 77.123 1.00 99.90 C ATOM 33 CG PRO 110 22.918 9.544 76.235 1.00 99.90 C ATOM 34 CD PRO 110 22.187 8.320 76.802 1.00 99.90 C ATOM 35 N ILE 111 19.171 11.473 76.788 1.00 99.90 N ATOM 36 CA ILE 111 18.173 11.962 75.826 1.00 99.90 C ATOM 37 C ILE 111 18.483 13.438 75.563 1.00 99.90 C ATOM 38 O ILE 111 18.536 14.245 76.485 1.00 99.90 O ATOM 39 CB ILE 111 16.729 11.772 76.356 1.00 99.90 C ATOM 40 CG1 ILE 111 16.463 10.292 76.701 1.00 99.90 C ATOM 41 CG2 ILE 111 15.712 12.325 75.342 1.00 99.90 C ATOM 42 CD1 ILE 111 15.087 9.964 77.297 1.00 99.90 C ATOM 43 N VAL 112 18.616 13.759 74.275 1.00 99.90 N ATOM 44 CA VAL 112 18.857 15.143 73.825 1.00 99.90 C ATOM 45 C VAL 112 17.580 15.644 73.135 1.00 99.90 C ATOM 46 O VAL 112 17.106 15.075 72.151 1.00 99.90 O ATOM 47 CB VAL 112 20.082 15.210 72.890 1.00 99.90 C ATOM 48 CG1 VAL 112 20.362 16.647 72.438 1.00 99.90 C ATOM 49 CG2 VAL 112 21.348 14.662 73.560 1.00 99.90 C ATOM 50 N ILE 113 17.062 16.739 73.683 1.00 99.90 N ATOM 51 CA ILE 113 15.836 17.395 73.186 1.00 99.90 C ATOM 52 C ILE 113 16.238 18.536 72.241 1.00 99.90 C ATOM 53 O ILE 113 16.682 19.599 72.679 1.00 99.90 O ATOM 54 CB ILE 113 14.970 17.924 74.351 1.00 99.90 C ATOM 55 CG1 ILE 113 14.639 16.801 75.353 1.00 99.90 C ATOM 56 CG2 ILE 113 13.686 18.573 73.803 1.00 99.90 C ATOM 57 CD1 ILE 113 13.980 17.285 76.652 1.00 99.90 C ATOM 58 N GLY 114 16.120 18.244 70.940 1.00 99.90 N ATOM 59 CA GLY 114 16.447 19.221 69.887 1.00 99.90 C ATOM 60 C GLY 114 17.776 18.845 69.220 1.00 99.90 C ATOM 61 O GLY 114 18.662 18.259 69.832 1.00 99.90 O ATOM 62 N PHE 115 17.889 19.251 67.959 1.00 99.90 N ATOM 63 CA PHE 115 19.064 18.927 67.129 1.00 99.90 C ATOM 64 C PHE 115 19.717 20.167 66.499 1.00 99.90 C ATOM 65 O PHE 115 20.303 20.150 65.416 1.00 99.90 O ATOM 66 CB PHE 115 18.646 17.876 66.080 1.00 99.90 C ATOM 67 CG PHE 115 19.825 17.382 65.249 1.00 99.90 C ATOM 68 CD1 PHE 115 20.749 16.514 65.833 1.00 99.90 C ATOM 69 CD2 PHE 115 20.050 17.864 63.977 1.00 99.90 C ATOM 70 CE1 PHE 115 21.885 16.123 65.122 1.00 99.90 C ATOM 71 CE2 PHE 115 21.202 17.490 63.276 1.00 99.90 C ATOM 72 CZ PHE 115 22.105 16.612 63.864 1.00 99.90 C ATOM 73 N GLY 116 19.584 21.297 67.196 1.00 99.90 N ATOM 74 CA GLY 116 20.275 22.528 66.764 1.00 99.90 C ATOM 75 C GLY 116 21.787 22.444 67.059 1.00 99.90 C ATOM 76 O GLY 116 22.307 21.361 67.342 1.00 99.90 O ATOM 77 N PRO 117 22.415 23.609 67.276 1.00 99.90 N ATOM 78 CA PRO 117 23.853 23.700 67.617 1.00 99.90 C ATOM 79 C PRO 117 24.200 23.016 68.952 1.00 99.90 C ATOM 80 O PRO 117 24.924 22.025 68.958 1.00 99.90 O ATOM 81 CB PRO 117 24.145 25.202 67.626 1.00 99.90 C ATOM 82 CG PRO 117 22.806 25.835 68.004 1.00 99.90 C ATOM 83 CD PRO 117 21.793 24.947 67.286 1.00 99.90 C ATOM 84 N CYS 118 23.481 23.375 70.015 1.00 99.90 N ATOM 85 CA CYS 118 23.704 22.801 71.364 1.00 99.90 C ATOM 86 C CYS 118 23.461 21.284 71.417 1.00 99.90 C ATOM 87 O CYS 118 24.303 20.530 71.919 1.00 99.90 O ATOM 88 CB CYS 118 22.809 23.513 72.387 1.00 99.90 C ATOM 89 SG CYS 118 21.014 23.311 72.087 1.00 99.90 S ATOM 90 N GLY 119 22.400 20.861 70.718 1.00 99.90 N ATOM 91 CA GLY 119 21.975 19.448 70.635 1.00 99.90 C ATOM 92 C GLY 119 22.980 18.582 69.867 1.00 99.90 C ATOM 93 O GLY 119 23.395 17.526 70.342 1.00 99.90 O ATOM 94 N LEU 120 23.476 19.139 68.760 1.00 99.90 N ATOM 95 CA LEU 120 24.474 18.463 67.908 1.00 99.90 C ATOM 96 C LEU 120 25.805 18.269 68.647 1.00 99.90 C ATOM 97 O LEU 120 26.426 17.212 68.550 1.00 99.90 O ATOM 98 CB LEU 120 24.632 19.265 66.605 1.00 99.90 C ATOM 99 CG LEU 120 25.508 18.579 65.547 1.00 99.90 C ATOM 100 CD1 LEU 120 25.098 19.065 64.157 1.00 99.90 C ATOM 101 CD2 LEU 120 26.992 18.906 65.742 1.00 99.90 C ATOM 102 N PHE 121 26.179 19.268 69.451 1.00 99.90 N ATOM 103 CA PHE 121 27.443 19.239 70.227 1.00 99.90 C ATOM 104 C PHE 121 27.376 18.200 71.346 1.00 99.90 C ATOM 105 O PHE 121 28.233 17.323 71.426 1.00 99.90 O ATOM 106 CB PHE 121 27.746 20.626 70.804 1.00 99.90 C ATOM 107 CG PHE 121 28.162 21.667 69.760 1.00 99.90 C ATOM 108 CD1 PHE 121 27.660 21.665 68.458 1.00 99.90 C ATOM 109 CD2 PHE 121 29.051 22.672 70.135 1.00 99.90 C ATOM 110 CE1 PHE 121 28.017 22.644 67.549 1.00 99.90 C ATOM 111 CE2 PHE 121 29.415 23.650 69.215 1.00 99.90 C ATOM 112 CZ PHE 121 28.898 23.636 67.930 1.00 99.90 C ATOM 113 N ALA 122 26.229 18.199 72.024 1.00 99.90 N ATOM 114 CA ALA 122 25.919 17.218 73.085 1.00 99.90 C ATOM 115 C ALA 122 25.913 15.783 72.541 1.00 99.90 C ATOM 116 O ALA 122 26.658 14.934 73.037 1.00 99.90 O ATOM 117 CB ALA 122 24.564 17.553 73.712 1.00 99.90 C ATOM 118 N GLY 123 25.260 15.614 71.381 1.00 99.90 N ATOM 119 CA GLY 123 25.168 14.306 70.688 1.00 99.90 C ATOM 120 C GLY 123 26.543 13.770 70.279 1.00 99.90 C ATOM 121 O GLY 123 26.876 12.624 70.584 1.00 99.90 O ATOM 122 N LEU 124 27.382 14.669 69.762 1.00 99.90 N ATOM 123 CA LEU 124 28.743 14.305 69.320 1.00 99.90 C ATOM 124 C LEU 124 29.654 13.896 70.482 1.00 99.90 C ATOM 125 O LEU 124 30.218 12.804 70.463 1.00 99.90 O ATOM 126 CB LEU 124 29.383 15.437 68.503 1.00 99.90 C ATOM 127 CG LEU 124 30.775 15.052 67.976 1.00 99.90 C ATOM 128 CD1 LEU 124 30.718 13.851 67.025 1.00 99.90 C ATOM 129 CD2 LEU 124 31.431 16.250 67.293 1.00 99.90 C ATOM 130 N VAL 125 29.654 14.714 71.534 1.00 99.90 N ATOM 131 CA VAL 125 30.506 14.466 72.720 1.00 99.90 C ATOM 132 C VAL 125 30.082 13.201 73.474 1.00 99.90 C ATOM 133 O VAL 125 30.918 12.343 73.772 1.00 99.90 O ATOM 134 CB VAL 125 30.584 15.732 73.607 1.00 99.90 C ATOM 135 CG1 VAL 125 29.265 16.134 74.272 1.00 99.90 C ATOM 136 CG2 VAL 125 31.694 15.597 74.652 1.00 99.90 C ATOM 137 N LEU 126 28.767 13.042 73.658 1.00 99.90 N ATOM 138 CA LEU 126 28.176 11.858 74.322 1.00 99.90 C ATOM 139 C LEU 126 28.472 10.544 73.587 1.00 99.90 C ATOM 140 O LEU 126 28.980 9.593 74.127 1.00 99.90 O ATOM 141 CB LEU 126 26.662 12.009 74.474 1.00 99.90 C ATOM 142 CG LEU 126 26.235 13.068 75.496 1.00 99.90 C ATOM 143 CD1 LEU 126 24.725 13.272 75.395 1.00 99.90 C ATOM 144 CD2 LEU 126 26.592 12.649 76.924 1.00 99.90 C ATOM 145 N ALA 127 28.242 10.587 72.258 1.00 99.90 N ATOM 146 CA ALA 127 28.497 9.389 71.428 1.00 99.90 C ATOM 147 C ALA 127 29.982 9.021 71.354 1.00 99.90 C ATOM 148 O ALA 127 30.328 7.846 71.456 1.00 99.90 O ATOM 149 CB ALA 127 27.928 9.618 70.028 1.00 99.90 C ATOM 150 N GLN 128 30.847 10.037 71.317 1.00 99.90 N ATOM 151 CA GLN 128 32.313 9.835 71.318 1.00 99.90 C ATOM 152 C GLN 128 32.840 9.305 72.654 1.00 99.90 C ATOM 153 O GLN 128 33.770 8.499 72.670 1.00 99.90 O ATOM 154 CB GLN 128 33.060 11.119 70.962 1.00 99.90 C ATOM 155 CG GLN 128 32.875 11.489 69.491 1.00 99.90 C ATOM 156 CD GLN 128 33.673 12.744 69.123 1.00 99.90 C ATOM 157 OE1 GLN 128 33.913 13.655 69.904 1.00 99.90 O ATOM 158 NE2 GLN 128 34.093 12.802 67.884 1.00 99.90 N ATOM 159 N MET 129 32.190 9.709 73.745 1.00 99.90 N ATOM 160 CA MET 129 32.478 9.137 75.082 1.00 99.90 C ATOM 161 C MET 129 31.860 7.735 75.259 1.00 99.90 C ATOM 162 O MET 129 31.937 7.144 76.339 1.00 99.90 O ATOM 163 CB MET 129 32.079 10.121 76.205 1.00 99.90 C ATOM 164 CG MET 129 30.571 10.244 76.395 1.00 99.90 C ATOM 165 SD MET 129 29.922 11.403 77.655 1.00 99.90 S ATOM 166 CE MET 129 30.437 12.958 76.965 1.00 99.90 C ATOM 167 N GLY 130 31.232 7.240 74.179 1.00 99.90 N ATOM 168 CA GLY 130 30.630 5.886 74.087 1.00 99.90 C ATOM 169 C GLY 130 29.268 5.748 74.776 1.00 99.90 C ATOM 170 O GLY 130 28.909 4.662 75.221 1.00 99.90 O ATOM 171 N PHE 131 28.522 6.846 74.855 1.00 99.90 N ATOM 172 CA PHE 131 27.204 6.847 75.521 1.00 99.90 C ATOM 173 C PHE 131 26.157 6.879 74.432 1.00 99.90 C ATOM 174 O PHE 131 26.137 7.833 73.656 1.00 99.90 O ATOM 175 CB PHE 131 27.021 8.085 76.415 1.00 99.90 C ATOM 176 CG PHE 131 27.897 8.107 77.668 1.00 99.90 C ATOM 177 CD1 PHE 131 29.167 7.540 77.690 1.00 99.90 C ATOM 178 CD2 PHE 131 27.427 8.739 78.816 1.00 99.90 C ATOM 179 CE1 PHE 131 29.969 7.593 78.810 1.00 99.90 C ATOM 180 CE2 PHE 131 28.236 8.791 79.951 1.00 99.90 C ATOM 181 CZ PHE 131 29.502 8.222 79.945 1.00 99.90 C ATOM 182 N ASN 132 25.410 5.777 74.327 1.00 99.90 N ATOM 183 CA ASN 132 24.316 5.638 73.345 1.00 99.90 C ATOM 184 C ASN 132 23.291 6.752 73.521 1.00 99.90 C ATOM 185 O ASN 132 22.554 6.719 74.505 1.00 99.90 O ATOM 186 CB ASN 132 23.609 4.281 73.485 1.00 99.90 C ATOM 187 CG ASN 132 24.523 3.136 73.066 1.00 99.90 C ATOM 188 OD1 ASN 132 24.879 2.269 73.849 1.00 99.90 O ATOM 189 ND2 ASN 132 24.930 3.151 71.817 1.00 99.90 N ATOM 190 N PRO 133 23.285 7.748 72.607 1.00 99.90 N ATOM 191 CA PRO 133 22.421 8.933 72.756 1.00 99.90 C ATOM 192 C PRO 133 21.212 8.844 71.828 1.00 99.90 C ATOM 193 O PRO 133 21.267 8.354 70.702 1.00 99.90 O ATOM 194 CB PRO 133 23.361 10.064 72.331 1.00 99.90 C ATOM 195 CG PRO 133 24.163 9.452 71.181 1.00 99.90 C ATOM 196 CD PRO 133 24.247 7.954 71.523 1.00 99.90 C ATOM 197 N ILE 134 20.117 9.402 72.326 1.00 99.90 N ATOM 198 CA ILE 134 18.910 9.598 71.506 1.00 99.90 C ATOM 199 C ILE 134 18.640 11.100 71.368 1.00 99.90 C ATOM 200 O ILE 134 18.624 11.845 72.348 1.00 99.90 O ATOM 201 CB ILE 134 17.717 8.846 72.125 1.00 99.90 C ATOM 202 CG1 ILE 134 16.431 8.938 71.293 1.00 99.90 C ATOM 203 CG2 ILE 134 17.434 9.351 73.535 1.00 99.90 C ATOM 204 CD1 ILE 134 16.549 8.230 69.942 1.00 99.90 C ATOM 205 N ILE 135 18.471 11.529 70.128 1.00 99.90 N ATOM 206 CA ILE 135 17.949 12.877 69.868 1.00 99.90 C ATOM 207 C ILE 135 16.467 12.747 69.542 1.00 99.90 C ATOM 208 O ILE 135 16.052 11.920 68.730 1.00 99.90 O ATOM 209 CB ILE 135 18.741 13.572 68.735 1.00 99.90 C ATOM 210 CG1 ILE 135 20.186 13.742 69.204 1.00 99.90 C ATOM 211 CG2 ILE 135 18.115 14.930 68.365 1.00 99.90 C ATOM 212 CD1 ILE 135 21.195 14.050 68.090 1.00 99.90 C ATOM 213 N VAL 136 15.709 13.646 70.160 1.00 99.90 N ATOM 214 CA VAL 136 14.270 13.789 69.884 1.00 99.90 C ATOM 215 C VAL 136 14.070 15.168 69.249 1.00 99.90 C ATOM 216 O VAL 136 14.359 16.204 69.848 1.00 99.90 O ATOM 217 CB VAL 136 13.433 13.612 71.167 1.00 99.90 C ATOM 218 CG1 VAL 136 11.936 13.630 70.842 1.00 99.90 C ATOM 219 CG2 VAL 136 13.762 12.303 71.897 1.00 99.90 C ATOM 220 N GLU 137 13.717 15.122 67.966 1.00 99.90 N ATOM 221 CA GLU 137 13.483 16.323 67.150 1.00 99.90 C ATOM 222 C GLU 137 12.010 16.355 66.731 1.00 99.90 C ATOM 223 O GLU 137 11.493 15.366 66.216 1.00 99.90 O ATOM 224 CB GLU 137 14.416 16.261 65.928 1.00 99.90 C ATOM 225 CG GLU 137 14.215 17.391 64.909 1.00 99.90 C ATOM 226 CD GLU 137 14.310 18.793 65.526 1.00 99.90 C ATOM 227 OE1 GLU 137 15.247 19.032 66.319 1.00 99.90 O ATOM 228 OE2 GLU 137 13.377 19.577 65.248 1.00 99.90 O ATOM 229 N ARG 138 11.400 17.528 66.881 1.00 99.90 N ATOM 230 CA ARG 138 9.992 17.727 66.489 1.00 99.90 C ATOM 231 C ARG 138 9.797 17.804 64.967 1.00 99.90 C ATOM 232 O ARG 138 8.768 17.367 64.443 1.00 99.90 O ATOM 233 CB ARG 138 9.385 18.953 67.191 1.00 99.90 C ATOM 234 CG ARG 138 10.077 20.269 66.841 1.00 99.90 C ATOM 235 CD ARG 138 9.326 21.445 67.465 1.00 99.90 C ATOM 236 NE ARG 138 10.008 22.702 67.122 1.00 99.90 N ATOM 237 CZ ARG 138 11.098 23.202 67.705 1.00 99.90 C ATOM 238 NH1 ARG 138 11.703 22.571 68.704 1.00 99.90 H ATOM 239 NH2 ARG 138 11.582 24.374 67.307 1.00 99.90 H ATOM 240 N GLY 139 10.769 18.437 64.296 1.00 99.90 N ATOM 241 CA GLY 139 10.796 18.544 62.825 1.00 99.90 C ATOM 242 C GLY 139 11.111 17.190 62.181 1.00 99.90 C ATOM 243 O GLY 139 11.402 16.201 62.852 1.00 99.90 O ATOM 244 N LYS 140 11.255 17.247 60.863 1.00 99.90 N ATOM 245 CA LYS 140 11.608 16.072 60.052 1.00 99.90 C ATOM 246 C LYS 140 13.083 16.148 59.636 1.00 99.90 C ATOM 247 O LYS 140 13.727 17.197 59.705 1.00 99.90 O ATOM 248 CB LYS 140 10.686 16.036 58.820 1.00 99.90 C ATOM 249 CG LYS 140 10.880 14.777 57.968 1.00 99.90 C ATOM 250 CD LYS 140 10.090 14.796 56.655 1.00 99.90 C ATOM 251 CE LYS 140 10.532 15.921 55.720 1.00 99.90 C ATOM 252 NZ LYS 140 9.704 15.899 54.501 1.00 99.90 N ATOM 253 N GLU 141 13.624 14.979 59.298 1.00 99.90 N ATOM 254 CA GLU 141 14.948 14.880 58.660 1.00 99.90 C ATOM 255 C GLU 141 14.816 15.380 57.209 1.00 99.90 C ATOM 256 O GLU 141 13.958 14.923 56.459 1.00 99.90 O ATOM 257 CB GLU 141 15.385 13.411 58.760 1.00 99.90 C ATOM 258 CG GLU 141 16.789 13.122 58.207 1.00 99.90 C ATOM 259 CD GLU 141 16.883 13.182 56.678 1.00 99.90 C ATOM 260 OE1 GLU 141 15.893 12.809 56.012 1.00 99.90 O ATOM 261 OE2 GLU 141 17.946 13.646 56.211 1.00 99.90 O ATOM 262 N VAL 142 15.734 16.269 56.836 1.00 99.90 N ATOM 263 CA VAL 142 15.771 16.870 55.478 1.00 99.90 C ATOM 264 C VAL 142 16.761 16.169 54.530 1.00 99.90 C ATOM 265 O VAL 142 17.862 16.712 54.272 1.00 99.90 O ATOM 266 CB VAL 142 15.942 18.410 55.615 1.00 99.90 C ATOM 267 CG1 VAL 142 17.241 18.839 56.308 1.00 99.90 C ATOM 268 CG2 VAL 142 15.752 19.119 54.269 1.00 99.90 C ATOM 269 OXT VAL 142 16.397 15.062 54.070 1.00 99.90 O TER 270 VAL 142 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 262 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 36.37 87.1 70 14.1 496 ARMSMC SECONDARY STRUCTURE . . 12.36 94.6 37 15.8 234 ARMSMC SURFACE . . . . . . . . 69.67 69.2 13 5.4 240 ARMSMC BURIED . . . . . . . . 22.74 91.2 57 22.3 256 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 60.99 65.4 26 13.4 194 ARMSSC1 RELIABLE SIDE CHAINS . 56.82 68.2 22 12.7 173 ARMSSC1 SECONDARY STRUCTURE . . 61.73 66.7 15 14.9 101 ARMSSC1 SURFACE . . . . . . . . 58.63 50.0 4 4.0 101 ARMSSC1 BURIED . . . . . . . . 61.41 68.2 22 23.7 93 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.15 52.4 21 14.0 150 ARMSSC2 RELIABLE SIDE CHAINS . 74.09 52.9 17 13.9 122 ARMSSC2 SECONDARY STRUCTURE . . 65.54 50.0 10 13.2 76 ARMSSC2 SURFACE . . . . . . . . 136.53 25.0 4 4.8 84 ARMSSC2 BURIED . . . . . . . . 54.48 58.8 17 25.8 66 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.20 42.9 7 10.6 66 ARMSSC3 RELIABLE SIDE CHAINS . 82.13 33.3 6 9.8 61 ARMSSC3 SECONDARY STRUCTURE . . 13.44 100.0 1 2.9 34 ARMSSC3 SURFACE . . . . . . . . 72.55 66.7 3 6.2 48 ARMSSC3 BURIED . . . . . . . . 78.83 25.0 4 22.2 18 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 110.71 33.3 3 10.3 29 ARMSSC4 RELIABLE SIDE CHAINS . 110.71 33.3 3 10.3 29 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 152.43 0.0 1 4.2 24 ARMSSC4 BURIED . . . . . . . . 82.26 50.0 2 40.0 5 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.55 (Number of atoms: 36) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.55 36 14.5 249 CRMSCA CRN = ALL/NP . . . . . 0.0431 CRMSCA SECONDARY STRUCTURE . . 0.82 19 16.2 117 CRMSCA SURFACE . . . . . . . . 3.11 7 5.8 121 CRMSCA BURIED . . . . . . . . 0.81 29 22.7 128 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.62 174 14.3 1214 CRMSMC SECONDARY STRUCTURE . . 0.89 93 16.1 578 CRMSMC SURFACE . . . . . . . . 3.18 34 5.7 595 CRMSMC BURIED . . . . . . . . 0.91 140 22.6 619 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 2.84 118 13.0 910 CRMSSC RELIABLE SIDE CHAINS . 2.97 100 12.6 792 CRMSSC SECONDARY STRUCTURE . . 1.79 59 12.7 466 CRMSSC SURFACE . . . . . . . . 5.19 23 4.6 502 CRMSSC BURIED . . . . . . . . 1.87 95 23.3 408 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.22 262 13.7 1906 CRMSALL SECONDARY STRUCTURE . . 1.34 135 14.5 934 CRMSALL SURFACE . . . . . . . . 4.14 51 5.2 986 CRMSALL BURIED . . . . . . . . 1.41 211 22.9 920 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.881 0.980 0.980 36 14.5 249 ERRCA SECONDARY STRUCTURE . . 99.188 0.986 0.986 19 16.2 117 ERRCA SURFACE . . . . . . . . 97.608 0.956 0.958 7 5.8 121 ERRCA BURIED . . . . . . . . 99.188 0.986 0.986 29 22.7 128 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.822 0.979 0.979 174 14.3 1214 ERRMC SECONDARY STRUCTURE . . 99.164 0.985 0.986 93 16.1 578 ERRMC SURFACE . . . . . . . . 97.520 0.954 0.956 34 5.7 595 ERRMC BURIED . . . . . . . . 99.138 0.985 0.985 140 22.6 619 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.927 0.962 0.963 118 13.0 910 ERRSC RELIABLE SIDE CHAINS . 97.871 0.961 0.963 100 12.6 792 ERRSC SECONDARY STRUCTURE . . 98.448 0.972 0.972 59 12.7 466 ERRSC SURFACE . . . . . . . . 95.967 0.926 0.930 23 4.6 502 ERRSC BURIED . . . . . . . . 98.401 0.971 0.971 95 23.3 408 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.446 0.972 0.973 262 13.7 1906 ERRALL SECONDARY STRUCTURE . . 98.868 0.980 0.980 135 14.5 934 ERRALL SURFACE . . . . . . . . 96.907 0.943 0.946 51 5.2 986 ERRALL BURIED . . . . . . . . 98.818 0.979 0.979 211 22.9 920 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 28 33 34 35 36 36 249 DISTCA CA (P) 11.24 13.25 13.65 14.06 14.46 249 DISTCA CA (RMS) 0.65 0.80 0.87 1.06 1.55 DISTCA ALL (N) 160 210 230 251 261 262 1906 DISTALL ALL (P) 8.39 11.02 12.07 13.17 13.69 1906 DISTALL ALL (RMS) 0.66 0.90 1.12 1.53 2.09 DISTALL END of the results output