####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 23 ( 164), selected 23 , name T0604TS035_1_2-D3 # Molecule2: number of CA atoms 205 ( 1531), selected 23 , name T0604-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0604TS035_1_2-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 474 - 492 4.91 8.87 LCS_AVERAGE: 8.84 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 476 - 483 1.93 12.64 LCS_AVERAGE: 3.37 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 481 - 485 0.68 13.06 LONGEST_CONTINUOUS_SEGMENT: 5 490 - 494 0.56 16.57 LCS_AVERAGE: 2.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 23 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 474 I 474 3 4 19 3 3 4 4 6 8 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT K 475 K 475 3 5 19 3 3 4 5 8 9 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT G 476 G 476 4 8 19 4 5 6 7 8 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT F 477 F 477 4 8 19 4 5 6 7 8 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT A 478 A 478 4 8 19 4 5 6 7 8 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT S 479 S 479 4 8 19 4 5 6 7 8 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT E 480 E 480 3 8 19 3 3 4 6 7 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT D 481 D 481 5 8 19 3 5 5 7 8 10 11 14 15 15 16 16 17 17 18 18 19 21 21 21 LCS_GDT G 482 G 482 5 8 19 4 5 5 6 8 9 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT L 483 L 483 5 8 19 4 5 5 6 7 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT L 484 L 484 5 7 19 4 5 5 6 7 9 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT T 485 T 485 5 7 19 4 5 5 6 7 10 11 14 15 15 15 16 17 17 18 18 20 21 21 21 LCS_GDT G 486 G 486 4 7 19 3 4 5 5 7 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT V 487 V 487 4 6 19 3 4 5 5 7 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT E 488 E 488 4 7 19 3 4 5 6 8 9 11 13 15 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT T 489 T 489 4 7 19 3 4 6 7 7 9 10 12 14 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT R 490 R 490 5 7 19 3 5 6 7 8 9 11 12 14 15 16 16 17 17 18 18 20 21 21 21 LCS_GDT T 491 T 491 5 7 19 4 5 5 6 7 8 9 11 12 13 14 16 16 16 18 18 20 21 21 21 LCS_GDT S 492 S 492 5 7 19 4 5 5 6 7 7 9 11 12 13 14 15 16 16 18 18 20 21 21 21 LCS_GDT S 493 S 493 5 7 17 4 5 5 6 7 7 9 10 12 12 14 15 16 16 18 18 20 21 21 21 LCS_GDT P 494 P 494 5 7 17 4 5 5 5 7 7 8 9 10 12 13 14 16 16 16 18 20 21 21 21 LCS_GDT V 495 V 495 3 5 12 3 3 3 4 5 5 5 6 6 7 8 8 9 9 10 11 11 17 18 18 LCS_GDT C 496 C 496 3 5 10 3 3 3 4 5 5 5 6 6 7 7 7 7 8 8 8 8 9 9 9 LCS_AVERAGE LCS_A: 4.76 ( 2.06 3.37 8.84 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 8 10 11 14 15 15 16 16 17 17 18 18 20 21 21 21 GDT PERCENT_AT 1.95 2.44 2.93 3.41 3.90 4.88 5.37 6.83 7.32 7.32 7.80 7.80 8.29 8.29 8.78 8.78 9.76 10.24 10.24 10.24 GDT RMS_LOCAL 0.29 0.38 1.02 1.34 1.73 2.18 2.33 2.97 3.11 3.11 3.53 3.53 3.74 3.74 4.19 4.19 6.05 5.97 5.97 5.97 GDT RMS_ALL_AT 18.59 8.80 8.35 8.50 9.10 13.15 13.00 13.11 12.15 12.15 9.87 9.87 10.16 10.16 9.57 9.57 7.91 7.97 7.97 7.97 # Checking swapping # possible swapping detected: F 477 F 477 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 474 I 474 4.100 0 0.295 0.731 6.743 46.310 40.417 LGA K 475 K 475 2.177 0 0.094 0.926 5.651 59.167 52.011 LGA G 476 G 476 3.767 0 0.651 0.651 3.767 59.524 59.524 LGA F 477 F 477 3.567 0 0.107 0.447 7.883 48.333 28.052 LGA A 478 A 478 2.446 0 0.300 0.293 2.761 66.905 66.476 LGA S 479 S 479 1.677 0 0.637 0.867 5.700 67.143 56.667 LGA E 480 E 480 3.826 0 0.628 1.228 9.671 59.405 30.317 LGA D 481 D 481 0.894 0 0.176 1.238 5.157 79.643 64.464 LGA G 482 G 482 2.534 0 0.030 0.030 2.534 73.452 73.452 LGA L 483 L 483 1.957 0 0.139 0.871 8.284 77.262 46.071 LGA L 484 L 484 3.748 0 0.061 1.194 9.562 41.310 25.298 LGA T 485 T 485 3.298 0 0.230 0.869 6.721 59.167 41.905 LGA G 486 G 486 3.002 0 0.060 0.060 3.054 63.571 63.571 LGA V 487 V 487 2.559 0 0.092 0.099 5.250 49.167 47.279 LGA E 488 E 488 5.489 0 0.110 0.543 8.936 18.333 19.206 LGA T 489 T 489 10.900 0 0.092 1.213 13.454 0.714 0.408 LGA R 490 R 490 11.046 0 0.483 1.355 13.112 0.000 19.004 LGA T 491 T 491 14.461 0 0.049 1.071 18.670 0.000 0.000 LGA S 492 S 492 20.443 0 0.024 0.595 22.418 0.000 0.000 LGA S 493 S 493 23.750 0 0.156 0.649 26.022 0.000 0.000 LGA P 494 P 494 25.092 0 0.494 0.492 27.924 0.000 0.000 LGA V 495 V 495 27.210 0 0.081 1.006 28.464 0.000 0.000 LGA C 496 C 496 31.616 0 0.142 0.548 34.496 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 23 92 92 100.00 164 164 100.00 205 SUMMARY(RMSD_GDC): 7.677 7.647 8.416 4.241 3.581 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 23 205 4.0 14 2.97 5.366 5.054 0.456 LGA_LOCAL RMSD: 2.969 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.113 Number of assigned atoms: 23 Std_ASGN_ATOMS RMSD: 7.677 Standard rmsd on all 23 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.772801 * X + -0.606486 * Y + 0.186958 * Z + 14.295639 Y_new = 0.236108 * X + 0.001307 * Y + -0.971726 * Z + 33.173073 Z_new = 0.589094 * X + 0.795093 * Y + 0.144206 * Z + 37.964127 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.296516 -0.629937 1.391376 [DEG: 16.9891 -36.0928 79.7200 ] ZXZ: 0.190075 1.426085 0.637660 [DEG: 10.8905 81.7087 36.5352 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0604TS035_1_2-D3 REMARK 2: T0604-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0604TS035_1_2-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 23 205 4.0 14 2.97 5.054 7.68 REMARK ---------------------------------------------------------- MOLECULE T0604TS035_1_2-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0604 REMARK PARENT 2i0z_A ATOM 2847 N ILE 474 28.430 51.500 53.114 1.00199.31 N ATOM 2848 CA ILE 474 27.751 52.205 52.064 1.00199.31 C ATOM 2849 CB ILE 474 26.760 51.536 51.174 1.00199.31 C ATOM 2850 CG2 ILE 474 27.413 50.263 50.637 1.00199.31 C ATOM 2851 CG1 ILE 474 25.438 51.312 51.852 1.00199.31 C ATOM 2852 CD1 ILE 474 24.293 51.447 50.855 1.00199.31 C ATOM 2853 C ILE 474 27.053 53.396 52.665 1.00199.31 C ATOM 2854 O ILE 474 27.373 53.817 53.776 1.00199.31 O ATOM 2855 N LYS 475 26.141 54.027 51.889 1.00105.17 N ATOM 2856 CA LYS 475 25.372 55.159 52.336 1.00105.17 C ATOM 2857 CB LYS 475 24.850 56.049 51.194 1.00105.17 C ATOM 2858 CG LYS 475 25.981 56.796 50.481 1.00105.17 C ATOM 2859 CD LYS 475 25.564 57.494 49.185 1.00105.17 C ATOM 2860 CE LYS 475 24.962 58.884 49.403 1.00105.17 C ATOM 2861 NZ LYS 475 24.597 59.486 48.101 1.00105.17 N ATOM 2862 C LYS 475 24.217 54.686 53.169 1.00105.17 C ATOM 2863 O LYS 475 23.764 53.552 53.045 1.00105.17 O ATOM 2864 N GLY 476 23.684 55.585 54.019 1.00 52.71 N ATOM 2865 CA GLY 476 22.736 55.236 55.042 1.00 52.71 C ATOM 2866 C GLY 476 21.346 54.946 54.553 1.00 52.71 C ATOM 2867 O GLY 476 21.005 55.038 53.375 1.00 52.71 O ATOM 2868 N PHE 477 20.532 54.594 55.565 1.00104.87 N ATOM 2869 CA PHE 477 19.167 54.167 55.695 1.00104.87 C ATOM 2870 CB PHE 477 19.024 53.974 57.228 1.00104.87 C ATOM 2871 CG PHE 477 17.759 53.516 57.874 1.00104.87 C ATOM 2872 CD1 PHE 477 17.315 52.222 57.775 1.00104.87 C ATOM 2873 CD2 PHE 477 17.062 54.386 58.681 1.00104.87 C ATOM 2874 CE1 PHE 477 16.172 51.804 58.413 1.00104.87 C ATOM 2875 CE2 PHE 477 15.921 53.978 59.325 1.00104.87 C ATOM 2876 CZ PHE 477 15.471 52.688 59.191 1.00104.87 C ATOM 2877 C PHE 477 18.264 55.244 55.165 1.00104.87 C ATOM 2878 O PHE 477 17.353 54.979 54.384 1.00104.87 O ATOM 2879 N ALA 478 18.510 56.505 55.551 1.00 36.11 N ATOM 2880 CA ALA 478 17.660 57.580 55.126 1.00 36.11 C ATOM 2881 CB ALA 478 18.070 58.936 55.727 1.00 36.11 C ATOM 2882 C ALA 478 17.719 57.720 53.633 1.00 36.11 C ATOM 2883 O ALA 478 16.704 57.980 52.988 1.00 36.11 O ATOM 2884 N SER 479 18.926 57.570 53.056 1.00 57.19 N ATOM 2885 CA SER 479 19.181 57.752 51.650 1.00 57.19 C ATOM 2886 CB SER 479 20.676 57.952 51.347 1.00 57.19 C ATOM 2887 OG SER 479 21.142 59.143 51.964 1.00 57.19 O ATOM 2888 C SER 479 18.722 56.587 50.813 1.00 57.19 C ATOM 2889 O SER 479 18.731 56.678 49.585 1.00 57.19 O ATOM 2890 N GLU 480 18.316 55.464 51.434 1.00127.25 N ATOM 2891 CA GLU 480 18.029 54.256 50.699 1.00127.25 C ATOM 2892 CB GLU 480 17.840 53.035 51.616 1.00127.25 C ATOM 2893 CG GLU 480 16.587 53.154 52.485 1.00127.25 C ATOM 2894 CD GLU 480 16.579 52.056 53.540 1.00127.25 C ATOM 2895 OE1 GLU 480 16.982 50.909 53.214 1.00127.25 O ATOM 2896 OE2 GLU 480 16.160 52.353 54.690 1.00127.25 O ATOM 2897 C GLU 480 16.787 54.359 49.863 1.00127.25 C ATOM 2898 O GLU 480 15.862 55.109 50.171 1.00127.25 O ATOM 2899 N ASP 481 16.776 53.622 48.725 1.00107.42 N ATOM 2900 CA ASP 481 15.618 53.540 47.878 1.00107.42 C ATOM 2901 CB ASP 481 15.900 52.923 46.491 1.00107.42 C ATOM 2902 CG ASP 481 16.453 51.516 46.648 1.00107.42 C ATOM 2903 OD1 ASP 481 15.660 50.586 46.951 1.00107.42 O ATOM 2904 OD2 ASP 481 17.689 51.358 46.460 1.00107.42 O ATOM 2905 C ASP 481 14.555 52.752 48.577 1.00107.42 C ATOM 2906 O ASP 481 13.383 53.126 48.555 1.00107.42 O ATOM 2907 N GLY 482 14.932 51.639 49.239 1.00 52.82 N ATOM 2908 CA GLY 482 13.950 50.871 49.948 1.00 52.82 C ATOM 2909 C GLY 482 14.628 50.342 51.163 1.00 52.82 C ATOM 2910 O GLY 482 15.819 50.046 51.132 1.00 52.82 O ATOM 2911 N LEU 483 13.886 50.209 52.278 1.00141.35 N ATOM 2912 CA LEU 483 14.504 49.695 53.457 1.00141.35 C ATOM 2913 CB LEU 483 13.835 50.161 54.763 1.00141.35 C ATOM 2914 CG LEU 483 14.504 49.608 56.032 1.00141.35 C ATOM 2915 CD1 LEU 483 15.985 49.999 56.091 1.00141.35 C ATOM 2916 CD2 LEU 483 13.735 50.042 57.291 1.00141.35 C ATOM 2917 C LEU 483 14.451 48.204 53.376 1.00141.35 C ATOM 2918 O LEU 483 13.534 47.633 52.794 1.00141.35 O ATOM 2919 N LEU 484 15.490 47.532 53.903 1.00162.98 N ATOM 2920 CA LEU 484 15.493 46.099 53.940 1.00162.98 C ATOM 2921 CB LEU 484 16.831 45.480 53.498 1.00162.98 C ATOM 2922 CG LEU 484 17.260 45.839 52.062 1.00162.98 C ATOM 2923 CD1 LEU 484 16.287 45.269 51.020 1.00162.98 C ATOM 2924 CD2 LEU 484 17.489 47.351 51.907 1.00162.98 C ATOM 2925 C LEU 484 15.350 45.783 55.385 1.00162.98 C ATOM 2926 O LEU 484 16.216 46.150 56.170 1.00162.98 O ATOM 2927 N THR 485 14.237 45.144 55.777 1.00184.09 N ATOM 2928 CA THR 485 13.956 44.828 57.150 1.00184.09 C ATOM 2929 CB THR 485 14.394 45.892 58.136 1.00184.09 C ATOM 2930 OG1 THR 485 14.219 45.499 59.487 1.00184.09 O ATOM 2931 CG2 THR 485 13.569 47.154 57.848 1.00184.09 C ATOM 2932 C THR 485 12.490 44.949 57.202 1.00184.09 C ATOM 2933 O THR 485 11.854 45.230 56.189 1.00184.09 O ATOM 2934 N GLY 486 11.917 44.775 58.396 1.00 53.10 N ATOM 2935 CA GLY 486 10.522 45.029 58.479 1.00 53.10 C ATOM 2936 C GLY 486 9.883 43.989 59.318 1.00 53.10 C ATOM 2937 O GLY 486 10.550 43.128 59.891 1.00 53.10 O ATOM 2938 N VAL 487 8.541 44.054 59.391 1.00135.87 N ATOM 2939 CA VAL 487 7.822 43.107 60.184 1.00135.87 C ATOM 2940 CB VAL 487 6.359 43.408 60.291 1.00135.87 C ATOM 2941 CG1 VAL 487 6.217 44.785 60.956 1.00135.87 C ATOM 2942 CG2 VAL 487 5.733 43.337 58.891 1.00135.87 C ATOM 2943 C VAL 487 8.001 41.779 59.530 1.00135.87 C ATOM 2944 O VAL 487 7.930 41.657 58.308 1.00135.87 O ATOM 2945 N GLU 488 8.247 40.732 60.339 1.00 99.24 N ATOM 2946 CA GLU 488 8.554 39.470 59.739 1.00 99.24 C ATOM 2947 CB GLU 488 9.191 38.448 60.695 1.00 99.24 C ATOM 2948 CG GLU 488 9.816 37.263 59.954 1.00 99.24 C ATOM 2949 CD GLU 488 10.693 36.493 60.929 1.00 99.24 C ATOM 2950 OE1 GLU 488 10.697 36.854 62.136 1.00 99.24 O ATOM 2951 OE2 GLU 488 11.372 35.534 60.478 1.00 99.24 O ATOM 2952 C GLU 488 7.330 38.869 59.125 1.00 99.24 C ATOM 2953 O GLU 488 6.223 38.976 59.651 1.00 99.24 O ATOM 2954 N THR 489 7.543 38.221 57.963 1.00114.39 N ATOM 2955 CA THR 489 6.558 37.569 57.146 1.00114.39 C ATOM 2956 CB THR 489 7.113 37.103 55.835 1.00114.39 C ATOM 2957 OG1 THR 489 6.078 36.564 55.028 1.00114.39 O ATOM 2958 CG2 THR 489 8.181 36.032 56.113 1.00114.39 C ATOM 2959 C THR 489 6.029 36.352 57.838 1.00114.39 C ATOM 2960 O THR 489 4.884 35.956 57.630 1.00114.39 O ATOM 2961 N ARG 490 6.865 35.706 58.665 1.00158.18 N ATOM 2962 CA ARG 490 6.461 34.489 59.305 1.00158.18 C ATOM 2963 CB ARG 490 7.529 33.936 60.261 1.00158.18 C ATOM 2964 CG ARG 490 7.815 34.860 61.446 1.00158.18 C ATOM 2965 CD ARG 490 9.039 34.452 62.265 1.00158.18 C ATOM 2966 NE ARG 490 8.839 33.048 62.720 1.00158.18 N ATOM 2967 CZ ARG 490 9.910 32.211 62.835 1.00158.18 C ATOM 2968 NH1 ARG 490 11.166 32.660 62.545 1.00158.18 N ATOM 2969 NH2 ARG 490 9.721 30.918 63.230 1.00158.18 N ATOM 2970 C ARG 490 5.256 34.797 60.134 1.00158.18 C ATOM 2971 O ARG 490 4.353 33.973 60.274 1.00158.18 O ATOM 2972 N THR 491 5.223 36.017 60.697 1.00 58.53 N ATOM 2973 CA THR 491 4.199 36.462 61.593 1.00 58.53 C ATOM 2974 CB THR 491 4.449 37.850 62.101 1.00 58.53 C ATOM 2975 OG1 THR 491 5.702 37.908 62.767 1.00 58.53 O ATOM 2976 CG2 THR 491 3.314 38.239 63.062 1.00 58.53 C ATOM 2977 C THR 491 2.858 36.488 60.925 1.00 58.53 C ATOM 2978 O THR 491 1.846 36.240 61.575 1.00 58.53 O ATOM 2979 N SER 492 2.773 36.809 59.623 1.00 63.95 N ATOM 2980 CA SER 492 1.433 36.905 59.122 1.00 63.95 C ATOM 2981 CB SER 492 1.060 38.317 58.637 1.00 63.95 C ATOM 2982 OG SER 492 1.110 39.235 59.719 1.00 63.95 O ATOM 2983 C SER 492 1.194 35.937 58.011 1.00 63.95 C ATOM 2984 O SER 492 2.113 35.285 57.515 1.00 63.95 O ATOM 2985 N SER 493 -0.095 35.791 57.628 1.00 98.70 N ATOM 2986 CA SER 493 -0.424 34.941 56.523 1.00 98.70 C ATOM 2987 CB SER 493 -1.910 34.972 56.136 1.00 98.70 C ATOM 2988 OG SER 493 -2.688 34.387 57.169 1.00 98.70 O ATOM 2989 C SER 493 0.362 35.546 55.423 1.00 98.70 C ATOM 2990 O SER 493 0.546 36.760 55.464 1.00 98.70 O ATOM 2991 N PRO 494 0.721 34.749 54.428 1.00254.06 N ATOM 2992 CA PRO 494 1.772 35.045 53.473 1.00254.06 C ATOM 2993 CD PRO 494 -0.237 33.809 53.883 1.00254.06 C ATOM 2994 CB PRO 494 1.458 34.252 52.209 1.00254.06 C ATOM 2995 CG PRO 494 0.473 33.169 52.678 1.00254.06 C ATOM 2996 C PRO 494 2.015 36.494 53.235 1.00254.06 C ATOM 2997 O PRO 494 1.227 37.153 52.557 1.00254.06 O ATOM 2998 N VAL 495 3.160 36.950 53.793 1.00 70.73 N ATOM 2999 CA VAL 495 3.529 38.321 53.969 1.00 70.73 C ATOM 3000 CB VAL 495 3.927 38.576 55.401 1.00 70.73 C ATOM 3001 CG1 VAL 495 4.319 40.046 55.625 1.00 70.73 C ATOM 3002 CG2 VAL 495 2.809 38.059 56.300 1.00 70.73 C ATOM 3003 C VAL 495 4.754 38.572 53.160 1.00 70.73 C ATOM 3004 O VAL 495 5.451 37.639 52.771 1.00 70.73 O ATOM 3005 N CYS 496 5.019 39.874 52.912 1.00138.96 N ATOM 3006 CA CYS 496 6.124 40.420 52.182 1.00138.96 C ATOM 3007 CB CYS 496 7.528 40.129 52.758 1.00138.96 C ATOM 3008 SG CYS 496 8.169 38.455 52.458 1.00138.96 S ATOM 3009 C CYS 496 6.038 39.940 50.783 1.00138.96 C ATOM 3010 O CYS 496 5.611 38.814 50.543 1.00138.96 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 164 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 71.12 56.8 44 10.8 408 ARMSMC SECONDARY STRUCTURE . . 43.40 66.7 12 5.9 202 ARMSMC SURFACE . . . . . . . . 77.48 64.7 17 7.7 222 ARMSMC BURIED . . . . . . . . 66.80 51.9 27 14.5 186 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.34 15.8 19 11.9 159 ARMSSC1 RELIABLE SIDE CHAINS . 96.90 11.8 17 11.7 145 ARMSSC1 SECONDARY STRUCTURE . . 58.34 60.0 5 6.2 80 ARMSSC1 SURFACE . . . . . . . . 115.05 0.0 9 9.8 92 ARMSSC1 BURIED . . . . . . . . 73.19 30.0 10 14.9 67 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.93 30.0 10 8.5 117 ARMSSC2 RELIABLE SIDE CHAINS . 55.58 37.5 8 8.4 95 ARMSSC2 SECONDARY STRUCTURE . . 106.55 0.0 3 5.0 60 ARMSSC2 SURFACE . . . . . . . . 54.91 50.0 4 5.8 69 ARMSSC2 BURIED . . . . . . . . 84.26 16.7 6 12.5 48 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 60.82 50.0 4 9.3 43 ARMSSC3 RELIABLE SIDE CHAINS . 60.82 50.0 4 10.5 38 ARMSSC3 SECONDARY STRUCTURE . . 8.05 100.0 1 4.5 22 ARMSSC3 SURFACE . . . . . . . . 70.08 33.3 3 9.4 32 ARMSSC3 BURIED . . . . . . . . 8.05 100.0 1 9.1 11 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 29.49 50.0 2 9.1 22 ARMSSC4 RELIABLE SIDE CHAINS . 29.49 50.0 2 9.1 22 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 29.49 50.0 2 11.1 18 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.68 (Number of atoms: 23) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.68 23 11.2 205 CRMSCA CRN = ALL/NP . . . . . 0.3338 CRMSCA SECONDARY STRUCTURE . . 7.71 6 5.9 101 CRMSCA SURFACE . . . . . . . . 9.13 9 8.0 112 CRMSCA BURIED . . . . . . . . 6.58 14 15.1 93 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.86 112 11.2 1004 CRMSMC SECONDARY STRUCTURE . . 7.60 29 5.8 497 CRMSMC SURFACE . . . . . . . . 9.31 45 8.2 550 CRMSMC BURIED . . . . . . . . 6.72 67 14.8 454 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.77 72 10.1 711 CRMSSC RELIABLE SIDE CHAINS . 9.79 64 10.3 621 CRMSSC SECONDARY STRUCTURE . . 9.28 19 5.2 366 CRMSSC SURFACE . . . . . . . . 11.49 32 7.8 410 CRMSSC BURIED . . . . . . . . 8.15 40 13.3 301 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.65 164 10.7 1531 CRMSALL SECONDARY STRUCTURE . . 8.30 43 5.6 770 CRMSALL SURFACE . . . . . . . . 10.29 68 7.9 858 CRMSALL BURIED . . . . . . . . 7.27 96 14.3 673 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 105.108 0.863 0.874 23 11.2 205 ERRCA SECONDARY STRUCTURE . . 121.880 0.871 0.881 6 5.9 101 ERRCA SURFACE . . . . . . . . 95.165 0.852 0.865 9 8.0 112 ERRCA BURIED . . . . . . . . 111.499 0.869 0.880 14 15.1 93 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 106.607 0.864 0.875 112 11.2 1004 ERRMC SECONDARY STRUCTURE . . 124.693 0.878 0.887 29 5.8 497 ERRMC SURFACE . . . . . . . . 95.053 0.852 0.865 45 8.2 550 ERRMC BURIED . . . . . . . . 114.367 0.873 0.883 67 14.8 454 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 118.000 0.854 0.865 72 10.1 711 ERRSC RELIABLE SIDE CHAINS . 117.933 0.854 0.866 64 10.3 621 ERRSC SECONDARY STRUCTURE . . 131.696 0.876 0.884 19 5.2 366 ERRSC SURFACE . . . . . . . . 102.712 0.826 0.841 32 7.8 410 ERRSC BURIED . . . . . . . . 130.230 0.876 0.885 40 13.3 301 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 110.849 0.861 0.872 164 10.7 1531 ERRALL SECONDARY STRUCTURE . . 126.400 0.875 0.884 43 5.6 770 ERRALL SURFACE . . . . . . . . 98.801 0.842 0.856 68 7.9 858 ERRALL BURIED . . . . . . . . 119.383 0.874 0.883 96 14.3 673 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 6 21 23 205 DISTCA CA (P) 0.00 0.00 0.00 2.93 10.24 205 DISTCA CA (RMS) 0.00 0.00 0.00 4.10 6.33 DISTCA ALL (N) 0 1 5 37 128 164 1531 DISTALL ALL (P) 0.00 0.07 0.33 2.42 8.36 1531 DISTALL ALL (RMS) 0.00 1.93 2.64 3.97 6.54 DISTALL END of the results output