####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 51 ( 204), selected 51 , name T0602TS470_1-D1 # Molecule2: number of CA atoms 55 ( 437), selected 51 , name T0602-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0602TS470_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 5 - 55 1.55 1.55 LCS_AVERAGE: 92.73 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 5 - 55 1.55 1.55 LCS_AVERAGE: 92.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 47 5 - 51 1.00 1.58 LONGEST_CONTINUOUS_SEGMENT: 47 6 - 52 1.00 1.61 LONGEST_CONTINUOUS_SEGMENT: 47 7 - 53 0.98 1.63 LCS_AVERAGE: 83.46 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 51 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 5 E 5 47 51 51 6 28 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT R 6 R 6 47 51 51 10 27 46 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT H 7 H 7 47 51 51 8 18 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT Q 8 Q 8 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT H 9 H 9 47 51 51 15 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 10 L 10 47 51 51 15 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 11 L 11 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT S 12 S 12 47 51 51 16 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT E 13 E 13 47 51 51 13 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT Y 14 Y 14 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT Q 15 Q 15 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT Q 16 Q 16 47 51 51 16 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT I 17 I 17 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 18 L 18 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT T 19 T 19 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 20 L 20 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT S 21 S 21 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT E 22 E 22 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT Q 23 Q 23 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT M 24 M 24 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 25 L 25 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT V 26 V 26 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 27 L 27 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT A 28 A 28 47 51 51 17 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT T 29 T 29 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT E 30 E 30 47 51 51 9 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT G 31 G 31 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT N 32 N 32 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT W 33 W 33 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT D 34 D 34 47 51 51 15 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT A 35 A 35 47 51 51 15 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 36 L 36 47 51 51 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT V 37 V 37 47 51 51 6 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT D 38 D 38 47 51 51 4 28 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 39 L 39 47 51 51 8 28 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT E 40 E 40 47 51 51 9 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT M 41 M 41 47 51 51 9 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT T 42 T 42 47 51 51 8 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT Y 43 Y 43 47 51 51 8 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT L 44 L 44 47 51 51 8 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT K 45 K 45 47 51 51 8 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT A 46 A 46 47 51 51 7 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT V 47 V 47 47 51 51 7 29 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT E 48 E 48 47 51 51 8 21 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT S 49 S 49 47 51 51 7 28 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT T 50 T 50 47 51 51 7 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT A 51 A 51 47 51 51 9 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT N 52 N 52 47 51 51 6 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT I 53 I 53 47 51 51 6 28 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT T 54 T 54 35 51 51 0 3 13 40 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 LCS_GDT I 55 I 55 3 51 51 0 3 3 3 3 11 15 16 17 32 36 44 51 51 51 51 51 51 51 51 LCS_AVERAGE LCS_A: 89.64 ( 83.46 92.73 92.73 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 18 30 47 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 51 51 GDT PERCENT_AT 32.73 54.55 85.45 89.09 90.91 90.91 90.91 90.91 90.91 90.91 90.91 90.91 92.73 92.73 92.73 92.73 92.73 92.73 92.73 92.73 GDT RMS_LOCAL 0.34 0.58 0.98 1.02 1.11 1.11 1.11 1.11 1.11 1.11 1.11 1.11 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 GDT RMS_ALL_AT 1.81 1.68 1.63 1.60 1.59 1.59 1.59 1.59 1.59 1.59 1.59 1.59 1.55 1.55 1.55 1.55 1.55 1.55 1.55 1.55 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 5 E 5 1.272 5 0.170 0.170 1.272 83.690 37.196 LGA R 6 R 6 1.541 7 0.180 0.180 1.541 79.286 28.831 LGA H 7 H 7 1.327 6 0.061 0.061 1.363 81.429 32.571 LGA Q 8 Q 8 1.172 5 0.012 0.012 1.339 83.690 37.196 LGA H 9 H 9 1.041 6 0.078 0.078 1.041 88.214 35.286 LGA L 10 L 10 0.795 4 0.017 0.017 0.918 90.476 45.238 LGA L 11 L 11 1.006 4 0.051 0.051 1.064 83.690 41.845 LGA S 12 S 12 1.511 2 0.082 0.082 1.511 79.286 52.857 LGA E 13 E 13 1.034 5 0.019 0.019 1.116 83.690 37.196 LGA Y 14 Y 14 0.405 8 0.036 0.036 0.896 95.238 31.746 LGA Q 15 Q 15 1.356 5 0.061 0.061 1.521 81.548 36.243 LGA Q 16 Q 16 1.459 5 0.048 0.048 1.459 81.429 36.190 LGA I 17 I 17 0.734 4 0.026 0.026 1.005 88.214 44.107 LGA L 18 L 18 0.950 4 0.027 0.027 1.060 85.952 42.976 LGA T 19 T 19 1.065 3 0.025 0.025 1.065 88.214 50.408 LGA L 20 L 20 0.791 4 0.024 0.024 0.815 90.476 45.238 LGA S 21 S 21 0.321 2 0.036 0.036 0.490 100.000 66.667 LGA E 22 E 22 0.791 5 0.051 0.051 0.791 90.476 40.212 LGA Q 23 Q 23 0.791 5 0.082 0.082 0.795 90.476 40.212 LGA M 24 M 24 0.405 4 0.028 0.028 0.498 100.000 50.000 LGA L 25 L 25 0.554 4 0.073 0.073 0.693 92.857 46.429 LGA V 26 V 26 0.639 3 0.039 0.039 0.639 90.476 51.701 LGA L 27 L 27 0.517 4 0.036 0.036 0.698 92.857 46.429 LGA A 28 A 28 0.510 1 0.039 0.039 0.884 92.857 74.286 LGA T 29 T 29 0.402 3 0.042 0.042 0.964 95.238 54.422 LGA E 30 E 30 1.119 5 0.164 0.164 1.119 90.595 40.265 LGA G 31 G 31 0.678 0 0.195 0.195 1.348 88.214 88.214 LGA N 32 N 32 0.841 4 0.022 0.022 0.841 90.476 45.238 LGA W 33 W 33 0.624 10 0.099 0.099 0.836 90.476 25.850 LGA D 34 D 34 0.533 4 0.172 0.172 0.981 92.857 46.429 LGA A 35 A 35 0.597 1 0.193 0.193 1.292 88.214 70.571 LGA L 36 L 36 0.312 4 0.043 0.043 0.656 97.619 48.810 LGA V 37 V 37 0.934 3 0.085 0.085 1.164 85.952 49.116 LGA D 38 D 38 1.327 4 0.031 0.031 1.661 79.286 39.643 LGA L 39 L 39 1.306 4 0.047 0.047 1.345 81.429 40.714 LGA E 40 E 40 0.893 5 0.095 0.095 0.902 90.476 40.212 LGA M 41 M 41 1.060 4 0.039 0.039 1.063 83.690 41.845 LGA T 42 T 42 1.160 3 0.035 0.035 1.175 85.952 49.116 LGA Y 43 Y 43 0.828 8 0.036 0.036 0.901 90.476 30.159 LGA L 44 L 44 0.957 4 0.021 0.021 1.079 85.952 42.976 LGA K 45 K 45 1.406 5 0.144 0.144 1.747 79.286 35.238 LGA A 46 A 46 1.155 1 0.069 0.069 1.155 83.690 66.952 LGA V 47 V 47 1.019 3 0.152 0.152 1.598 81.548 46.599 LGA E 48 E 48 1.648 5 0.038 0.038 1.648 79.286 35.238 LGA S 49 S 49 1.614 2 0.085 0.085 1.614 79.286 52.857 LGA T 50 T 50 0.951 3 0.025 0.025 1.104 88.214 50.408 LGA A 51 A 51 0.768 1 0.036 0.036 0.816 92.857 74.286 LGA N 52 N 52 1.544 4 0.095 0.095 1.544 79.286 39.643 LGA I 53 I 53 1.370 4 0.517 0.517 2.470 77.262 38.631 LGA T 54 T 54 3.075 3 0.613 0.613 6.089 40.833 23.333 LGA I 55 I 55 8.200 4 0.580 0.580 8.842 7.976 3.988 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 51 204 204 100.00 410 204 49.76 55 SUMMARY(RMSD_GDC): 1.555 1.562 1.562 78.563 41.306 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 51 55 4.0 50 1.11 81.818 88.182 4.148 LGA_LOCAL RMSD: 1.105 Number of atoms: 50 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.586 Number of assigned atoms: 51 Std_ASGN_ATOMS RMSD: 1.555 Standard rmsd on all 51 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.614446 * X + -0.771347 * Y + -0.165769 * Z + 46.893337 Y_new = 0.071140 * X + 0.155088 * Y + -0.985336 * Z + -14.510264 Z_new = 0.785745 * X + -0.617229 * Y + -0.040419 * Z + 70.331688 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.026326 -0.903899 -1.636188 [DEG: 173.3957 -51.7896 -93.7467 ] ZXZ: -0.166675 1.611227 2.236654 [DEG: -9.5498 92.3165 128.1508 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0602TS470_1-D1 REMARK 2: T0602-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0602TS470_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 51 55 4.0 50 1.11 88.182 1.55 REMARK ---------------------------------------------------------- MOLECULE T0602TS470_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0602 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N GLU 5 16.071 -23.676 24.957 1.00 2.54 N ATOM 2 CA GLU 5 15.913 -23.646 26.446 1.00 2.54 C ATOM 3 C GLU 5 15.395 -22.286 26.951 1.00 2.54 C ATOM 4 O GLU 5 14.818 -22.208 28.037 1.00 2.54 O ATOM 5 N ARG 6 15.619 -21.225 26.174 1.00 2.21 N ATOM 6 CA ARG 6 15.150 -19.893 26.543 1.00 2.21 C ATOM 7 C ARG 6 13.716 -19.884 26.016 1.00 2.21 C ATOM 8 O ARG 6 12.917 -19.004 26.324 1.00 2.21 O ATOM 9 N HIS 7 13.398 -20.900 25.222 1.00 2.19 N ATOM 10 CA HIS 7 12.068 -21.067 24.668 1.00 2.19 C ATOM 11 C HIS 7 11.317 -22.051 25.559 1.00 2.19 C ATOM 12 O HIS 7 10.101 -21.960 25.723 1.00 2.19 O ATOM 13 N GLN 8 12.053 -22.999 26.132 1.00 1.95 N ATOM 14 CA GLN 8 11.456 -23.986 27.026 1.00 1.95 C ATOM 15 C GLN 8 11.088 -23.341 28.356 1.00 1.95 C ATOM 16 O GLN 8 9.970 -23.525 28.841 1.00 1.95 O ATOM 17 N HIS 9 12.016 -22.589 28.948 1.00 1.72 N ATOM 18 CA HIS 9 11.724 -21.922 30.210 1.00 1.72 C ATOM 19 C HIS 9 10.486 -21.039 30.010 1.00 1.72 C ATOM 20 O HIS 9 9.680 -20.883 30.920 1.00 1.72 O ATOM 21 N LEU 10 10.326 -20.474 28.815 1.00 1.69 N ATOM 22 CA LEU 10 9.155 -19.640 28.527 1.00 1.69 C ATOM 23 C LEU 10 7.852 -20.430 28.683 1.00 1.69 C ATOM 24 O LEU 10 6.887 -19.946 29.259 1.00 1.69 O ATOM 25 N LEU 11 7.820 -21.643 28.155 1.00 1.60 N ATOM 26 CA LEU 11 6.627 -22.455 28.264 1.00 1.60 C ATOM 27 C LEU 11 6.494 -22.910 29.702 1.00 1.60 C ATOM 28 O LEU 11 5.497 -22.643 30.353 1.00 1.60 O ATOM 29 N SER 12 7.529 -23.567 30.201 1.00 1.62 N ATOM 30 CA SER 12 7.540 -24.089 31.564 1.00 1.62 C ATOM 31 C SER 12 7.059 -23.118 32.639 1.00 1.62 C ATOM 32 O SER 12 6.488 -23.538 33.638 1.00 1.62 O ATOM 33 N GLU 13 7.293 -21.825 32.457 1.00 1.50 N ATOM 34 CA GLU 13 6.852 -20.860 33.462 1.00 1.50 C ATOM 35 C GLU 13 5.331 -20.773 33.499 1.00 1.50 C ATOM 36 O GLU 13 4.720 -20.934 34.556 1.00 1.50 O ATOM 37 N TYR 14 4.723 -20.531 32.342 1.00 1.36 N ATOM 38 CA TYR 14 3.273 -20.433 32.243 1.00 1.36 C ATOM 39 C TYR 14 2.589 -21.727 32.637 1.00 1.36 C ATOM 40 O TYR 14 1.457 -21.727 33.123 1.00 1.36 O ATOM 41 N GLN 15 3.282 -22.834 32.406 1.00 1.40 N ATOM 42 CA GLN 15 2.753 -24.119 32.791 1.00 1.40 C ATOM 43 C GLN 15 2.666 -23.988 34.299 1.00 1.40 C ATOM 44 O GLN 15 1.622 -24.256 34.890 1.00 1.40 O ATOM 45 N GLN 16 3.773 -23.562 34.915 1.00 1.39 N ATOM 46 CA GLN 16 3.843 -23.391 36.358 1.00 1.39 C ATOM 47 C GLN 16 2.816 -22.420 36.921 1.00 1.39 C ATOM 48 O GLN 16 2.287 -22.641 38.001 1.00 1.39 O ATOM 49 N ILE 17 2.546 -21.331 36.217 1.00 1.31 N ATOM 50 CA ILE 17 1.555 -20.379 36.707 1.00 1.31 C ATOM 51 C ILE 17 0.188 -21.032 36.652 1.00 1.31 C ATOM 52 O ILE 17 -0.553 -21.035 37.624 1.00 1.31 O ATOM 53 N LEU 18 -0.140 -21.582 35.493 1.00 1.34 N ATOM 54 CA LEU 18 -1.409 -22.243 35.307 1.00 1.34 C ATOM 55 C LEU 18 -1.558 -23.288 36.428 1.00 1.34 C ATOM 56 O LEU 18 -2.635 -23.432 37.003 1.00 1.34 O ATOM 57 N THR 19 -0.474 -23.979 36.775 1.00 1.38 N ATOM 58 CA THR 19 -0.548 -24.953 37.850 1.00 1.38 C ATOM 59 C THR 19 -0.852 -24.265 39.172 1.00 1.38 C ATOM 60 O THR 19 -1.851 -24.574 39.802 1.00 1.38 O ATOM 61 N LEU 20 0.001 -23.348 39.615 1.00 1.30 N ATOM 62 CA LEU 20 -0.248 -22.660 40.881 1.00 1.30 C ATOM 63 C LEU 20 -1.662 -22.109 40.952 1.00 1.30 C ATOM 64 O LEU 20 -2.305 -22.189 41.987 1.00 1.30 O ATOM 65 N SER 21 -2.147 -21.567 39.842 1.00 1.24 N ATOM 66 CA SER 21 -3.487 -20.990 39.786 1.00 1.24 C ATOM 67 C SER 21 -4.597 -22.030 40.002 1.00 1.24 C ATOM 68 O SER 21 -5.552 -21.803 40.752 1.00 1.24 O ATOM 69 N GLU 22 -4.477 -23.169 39.336 1.00 1.29 N ATOM 70 CA GLU 22 -5.458 -24.213 39.525 1.00 1.29 C ATOM 71 C GLU 22 -5.434 -24.510 41.015 1.00 1.29 C ATOM 72 O GLU 22 -6.474 -24.707 41.643 1.00 1.29 O ATOM 73 N GLN 23 -4.233 -24.553 41.578 1.00 1.31 N ATOM 74 CA GLN 23 -4.062 -24.827 43.004 1.00 1.31 C ATOM 75 C GLN 23 -4.867 -23.899 43.876 1.00 1.31 C ATOM 76 O GLN 23 -5.686 -24.337 44.664 1.00 1.31 O ATOM 77 N MET 24 -4.616 -22.612 43.729 1.00 1.23 N ATOM 78 CA MET 24 -5.290 -21.624 44.527 1.00 1.23 C ATOM 79 C MET 24 -6.797 -21.680 44.386 1.00 1.23 C ATOM 80 O MET 24 -7.522 -21.516 45.367 1.00 1.23 O ATOM 81 N LEU 25 -7.276 -21.892 43.165 1.00 1.32 N ATOM 82 CA LEU 25 -8.715 -22.000 42.944 1.00 1.32 C ATOM 83 C LEU 25 -9.248 -23.129 43.806 1.00 1.32 C ATOM 84 O LEU 25 -10.096 -22.922 44.651 1.00 1.32 O ATOM 85 N VAL 26 -8.759 -24.338 43.566 1.00 1.46 N ATOM 86 CA VAL 26 -9.175 -25.505 44.344 1.00 1.46 C ATOM 87 C VAL 26 -9.211 -25.277 45.850 1.00 1.46 C ATOM 88 O VAL 26 -10.108 -25.767 46.531 1.00 1.46 O ATOM 89 N LEU 27 -8.212 -24.579 46.371 1.00 1.37 N ATOM 90 CA LEU 27 -8.156 -24.289 47.786 1.00 1.37 C ATOM 91 C LEU 27 -9.330 -23.460 48.227 1.00 1.37 C ATOM 92 O LEU 27 -9.839 -23.639 49.319 1.00 1.37 O ATOM 93 N ALA 28 -9.752 -22.535 47.375 1.00 1.32 N ATOM 94 CA ALA 28 -10.885 -21.673 47.687 1.00 1.32 C ATOM 95 C ALA 28 -12.155 -22.517 47.585 1.00 1.32 C ATOM 96 O ALA 28 -13.025 -22.418 48.452 1.00 1.32 O ATOM 97 N THR 29 -12.287 -23.344 46.555 1.00 1.47 N ATOM 98 CA THR 29 -13.492 -24.102 46.508 1.00 1.47 C ATOM 99 C THR 29 -13.653 -24.802 47.852 1.00 1.47 C ATOM 100 O THR 29 -14.752 -24.936 48.378 1.00 1.47 O ATOM 101 N GLU 30 -12.542 -25.262 48.411 1.00 1.55 N ATOM 102 CA GLU 30 -12.579 -25.940 49.711 1.00 1.55 C ATOM 103 C GLU 30 -12.827 -24.912 50.776 1.00 1.55 C ATOM 104 O GLU 30 -13.352 -25.228 51.820 1.00 1.55 O ATOM 105 N GLY 31 -12.454 -23.672 50.510 1.00 1.57 N ATOM 106 CA GLY 31 -12.636 -22.647 51.517 1.00 1.57 C ATOM 107 C GLY 31 -11.425 -22.525 52.419 1.00 1.57 C ATOM 108 O GLY 31 -11.485 -21.940 53.502 1.00 1.57 O ATOM 109 N ASN 32 -10.318 -23.109 51.988 1.00 1.41 N ATOM 110 CA ASN 32 -9.086 -23.029 52.760 1.00 1.41 C ATOM 111 C ASN 32 -8.439 -21.670 52.489 1.00 1.41 C ATOM 112 O ASN 32 -7.342 -21.607 51.952 1.00 1.41 O ATOM 113 N TRP 33 -9.119 -20.589 52.856 1.00 1.09 N ATOM 114 CA TRP 33 -8.607 -19.239 52.618 1.00 1.09 C ATOM 115 C TRP 33 -7.344 -18.889 53.384 1.00 1.09 C ATOM 116 O TRP 33 -6.566 -18.037 52.961 1.00 1.09 O ATOM 117 N ASP 34 -7.141 -19.518 54.529 1.00 1.23 N ATOM 118 CA ASP 34 -5.947 -19.225 55.301 1.00 1.23 C ATOM 119 C ASP 34 -4.699 -19.562 54.500 1.00 1.23 C ATOM 120 O ASP 34 -3.666 -18.897 54.625 1.00 1.23 O ATOM 121 N ALA 35 -4.778 -20.612 53.690 1.00 1.20 N ATOM 122 CA ALA 35 -3.635 -20.991 52.863 1.00 1.20 C ATOM 123 C ALA 35 -3.542 -20.071 51.661 1.00 1.20 C ATOM 124 O ALA 35 -2.452 -19.737 51.233 1.00 1.20 O ATOM 125 N LEU 36 -4.682 -19.629 51.141 1.00 1.27 N ATOM 126 CA LEU 36 -4.649 -18.728 50.006 1.00 1.27 C ATOM 127 C LEU 36 -3.878 -17.479 50.366 1.00 1.27 C ATOM 128 O LEU 36 -2.991 -17.065 49.631 1.00 1.27 O ATOM 129 N VAL 37 -4.224 -16.864 51.492 1.00 1.62 N ATOM 130 CA VAL 37 -3.535 -15.653 51.933 1.00 1.62 C ATOM 131 C VAL 37 -2.032 -15.921 51.949 1.00 1.62 C ATOM 132 O VAL 37 -1.234 -15.104 51.473 1.00 1.62 O ATOM 133 N ASP 38 -1.645 -17.074 52.481 1.00 1.68 N ATOM 134 CA ASP 38 -0.241 -17.445 52.532 1.00 1.68 C ATOM 135 C ASP 38 0.399 -17.510 51.150 1.00 1.68 C ATOM 136 O ASP 38 1.297 -16.724 50.840 1.00 1.68 O ATOM 137 N LEU 39 -0.057 -18.437 50.317 1.00 1.61 N ATOM 138 CA LEU 39 0.484 -18.594 48.967 1.00 1.61 C ATOM 139 C LEU 39 0.336 -17.377 48.044 1.00 1.61 C ATOM 140 O LEU 39 1.069 -17.243 47.056 1.00 1.61 O ATOM 141 N GLU 40 -0.617 -16.502 48.346 1.00 1.56 N ATOM 142 CA GLU 40 -0.848 -15.330 47.511 1.00 1.56 C ATOM 143 C GLU 40 0.397 -14.552 47.101 1.00 1.56 C ATOM 144 O GLU 40 0.732 -14.493 45.913 1.00 1.56 O ATOM 145 N MET 41 1.073 -13.931 48.065 1.00 1.68 N ATOM 146 CA MET 41 2.252 -13.140 47.721 1.00 1.68 C ATOM 147 C MET 41 3.175 -13.893 46.752 1.00 1.68 C ATOM 148 O MET 41 3.580 -13.348 45.719 1.00 1.68 O ATOM 149 N THR 42 3.483 -15.146 47.076 1.00 1.60 N ATOM 150 CA THR 42 4.341 -15.980 46.241 1.00 1.60 C ATOM 151 C THR 42 3.800 -16.154 44.808 1.00 1.60 C ATOM 152 O THR 42 4.556 -16.210 43.833 1.00 1.60 O ATOM 153 N TYR 43 2.480 -16.225 44.694 1.00 1.43 N ATOM 154 CA TYR 43 1.818 -16.394 43.405 1.00 1.43 C ATOM 155 C TYR 43 1.918 -15.118 42.565 1.00 1.43 C ATOM 156 O TYR 43 2.383 -15.136 41.431 1.00 1.43 O ATOM 157 N LEU 44 1.464 -14.013 43.141 1.00 1.59 N ATOM 158 CA LEU 44 1.507 -12.704 42.494 1.00 1.59 C ATOM 159 C LEU 44 2.957 -12.376 42.193 1.00 1.59 C ATOM 160 O LEU 44 3.279 -11.680 41.234 1.00 1.59 O ATOM 161 N LYS 45 3.822 -12.898 43.051 1.00 1.75 N ATOM 162 CA LYS 45 5.257 -12.718 42.944 1.00 1.75 C ATOM 163 C LYS 45 5.680 -13.367 41.627 1.00 1.75 C ATOM 164 O LYS 45 6.181 -12.698 40.729 1.00 1.75 O ATOM 165 N ALA 46 5.436 -14.668 41.503 1.00 1.55 N ATOM 166 CA ALA 46 5.801 -15.415 40.304 1.00 1.55 C ATOM 167 C ALA 46 5.121 -14.887 39.049 1.00 1.55 C ATOM 168 O ALA 46 5.781 -14.639 38.045 1.00 1.55 O ATOM 169 N VAL 47 3.804 -14.715 39.102 1.00 1.67 N ATOM 170 CA VAL 47 3.071 -14.250 37.938 1.00 1.67 C ATOM 171 C VAL 47 3.561 -12.892 37.441 1.00 1.67 C ATOM 172 O VAL 47 3.424 -12.563 36.268 1.00 1.67 O ATOM 173 N GLU 48 4.119 -12.090 38.332 1.00 1.86 N ATOM 174 CA GLU 48 4.624 -10.807 37.913 1.00 1.86 C ATOM 175 C GLU 48 5.999 -11.028 37.309 1.00 1.86 C ATOM 176 O GLU 48 6.304 -10.525 36.237 1.00 1.86 O ATOM 177 N SER 49 6.821 -11.792 38.018 1.00 1.82 N ATOM 178 CA SER 49 8.176 -12.112 37.596 1.00 1.82 C ATOM 179 C SER 49 8.175 -12.712 36.198 1.00 1.82 C ATOM 180 O SER 49 9.200 -12.709 35.524 1.00 1.82 O ATOM 181 N THR 50 7.022 -13.174 35.742 1.00 1.63 N ATOM 182 CA THR 50 6.939 -13.789 34.441 1.00 1.63 C ATOM 183 C THR 50 6.638 -12.814 33.334 1.00 1.63 C ATOM 184 O THR 50 7.060 -13.014 32.197 1.00 1.63 O ATOM 185 N ALA 51 5.871 -11.781 33.644 1.00 2.08 N ATOM 186 CA ALA 51 5.543 -10.793 32.636 1.00 2.08 C ATOM 187 C ALA 51 6.686 -9.820 32.484 1.00 2.08 C ATOM 188 O ALA 51 6.903 -9.246 31.416 1.00 2.08 O ATOM 189 N ASN 52 7.437 -9.661 33.563 1.00 2.48 N ATOM 190 CA ASN 52 8.606 -8.804 33.532 1.00 2.48 C ATOM 191 C ASN 52 9.488 -9.470 32.453 1.00 2.48 C ATOM 192 O ASN 52 10.267 -8.811 31.773 1.00 2.48 O ATOM 193 N ILE 53 9.323 -10.791 32.334 1.00 2.35 N ATOM 194 CA ILE 53 10.056 -11.625 31.399 1.00 2.35 C ATOM 195 C ILE 53 9.961 -11.211 29.932 1.00 2.35 C ATOM 196 O ILE 53 8.994 -10.600 29.480 1.00 2.35 O ATOM 197 N THR 54 11.020 -11.530 29.200 1.00 2.45 N ATOM 198 CA THR 54 11.168 -11.208 27.778 1.00 2.45 C ATOM 199 C THR 54 10.686 -12.348 26.889 1.00 2.45 C ATOM 200 O THR 54 10.904 -13.515 27.217 1.00 2.45 O ATOM 201 N ILE 55 10.049 -12.007 25.771 1.00 2.66 N ATOM 202 CA ILE 55 9.577 -13.012 24.817 1.00 2.66 C ATOM 203 C ILE 55 10.668 -13.382 23.789 1.00 2.66 C ATOM 204 O ILE 55 11.218 -12.506 23.104 1.00 2.66 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 204 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 28.31 87.0 100 92.6 108 ARMSMC SECONDARY STRUCTURE . . 28.51 89.0 91 92.9 98 ARMSMC SURFACE . . . . . . . . 30.56 85.7 84 91.3 92 ARMSMC BURIED . . . . . . . . 10.40 93.8 16 100.0 16 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.55 (Number of atoms: 51) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.55 51 92.7 55 CRMSCA CRN = ALL/NP . . . . . 0.0305 CRMSCA SECONDARY STRUCTURE . . 1.17 46 93.9 49 CRMSCA SURFACE . . . . . . . . 1.66 43 91.5 47 CRMSCA BURIED . . . . . . . . 0.83 8 100.0 8 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.56 204 74.5 274 CRMSMC SECONDARY STRUCTURE . . 1.21 184 75.1 245 CRMSMC SURFACE . . . . . . . . 1.66 172 73.5 234 CRMSMC BURIED . . . . . . . . 0.82 32 80.0 40 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 217 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 171 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 192 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 188 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.56 204 46.7 437 CRMSALL SECONDARY STRUCTURE . . 1.21 184 47.4 388 CRMSALL SURFACE . . . . . . . . 1.66 172 45.7 376 CRMSALL BURIED . . . . . . . . 0.82 32 52.5 61 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.685 0.267 0.282 51 92.7 55 ERRCA SECONDARY STRUCTURE . . 0.600 0.262 0.283 46 93.9 49 ERRCA SURFACE . . . . . . . . 0.689 0.250 0.257 43 91.5 47 ERRCA BURIED . . . . . . . . 0.662 0.357 0.420 8 100.0 8 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.715 0.270 0.290 204 74.5 274 ERRMC SECONDARY STRUCTURE . . 0.638 0.264 0.287 184 75.1 245 ERRMC SURFACE . . . . . . . . 0.728 0.259 0.269 172 73.5 234 ERRMC BURIED . . . . . . . . 0.646 0.332 0.400 32 80.0 40 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 217 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 171 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 192 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 188 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.715 0.270 0.290 204 46.7 437 ERRALL SECONDARY STRUCTURE . . 0.638 0.264 0.287 184 47.4 388 ERRALL SURFACE . . . . . . . . 0.728 0.259 0.269 172 45.7 376 ERRALL BURIED . . . . . . . . 0.646 0.332 0.400 32 52.5 61 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 24 49 50 50 51 51 55 DISTCA CA (P) 43.64 89.09 90.91 90.91 92.73 55 DISTCA CA (RMS) 0.65 1.08 1.15 1.15 1.55 DISTCA ALL (N) 106 195 198 199 204 204 437 DISTALL ALL (P) 24.26 44.62 45.31 45.54 46.68 437 DISTALL ALL (RMS) 0.70 1.04 1.08 1.12 1.56 DISTALL END of the results output