####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 49 ( 196), selected 49 , name T0602TS328_1-D1 # Molecule2: number of CA atoms 55 ( 437), selected 49 , name T0602-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0602TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 49 7 - 55 1.79 1.79 LCS_AVERAGE: 89.09 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 49 7 - 55 1.79 1.79 LCS_AVERAGE: 89.09 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 13 - 49 0.99 2.06 LCS_AVERAGE: 63.82 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 7 H 7 31 49 49 11 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT Q 8 Q 8 31 49 49 15 25 38 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT H 9 H 9 31 49 49 15 22 37 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 10 L 10 31 49 49 15 22 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 11 L 11 31 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT S 12 S 12 31 49 49 15 25 38 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT E 13 E 13 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT Y 14 Y 14 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT Q 15 Q 15 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT Q 16 Q 16 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT I 17 I 17 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 18 L 18 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT T 19 T 19 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 20 L 20 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT S 21 S 21 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT E 22 E 22 37 49 49 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT Q 23 Q 23 37 49 49 6 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT M 24 M 24 37 49 49 9 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 25 L 25 37 49 49 9 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT V 26 V 26 37 49 49 5 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 27 L 27 37 49 49 5 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT A 28 A 28 37 49 49 9 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT T 29 T 29 37 49 49 8 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT E 30 E 30 37 49 49 5 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT G 31 G 31 37 49 49 5 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT N 32 N 32 37 49 49 11 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT W 33 W 33 37 49 49 9 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT D 34 D 34 37 49 49 4 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT A 35 A 35 37 49 49 11 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 36 L 36 37 49 49 11 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT V 37 V 37 37 49 49 8 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT D 38 D 38 37 49 49 11 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 39 L 39 37 49 49 11 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT E 40 E 40 37 49 49 11 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT M 41 M 41 37 49 49 11 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT T 42 T 42 37 49 49 9 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT Y 43 Y 43 37 49 49 9 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT L 44 L 44 37 49 49 11 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT K 45 K 45 37 49 49 11 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT A 46 A 46 37 49 49 9 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT V 47 V 47 37 49 49 9 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT E 48 E 48 37 49 49 11 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT S 49 S 49 37 49 49 11 24 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT T 50 T 50 36 49 49 11 24 41 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT A 51 A 51 36 49 49 9 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT N 52 N 52 36 49 49 10 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT I 53 I 53 34 49 49 9 21 34 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT T 54 T 54 20 49 49 3 3 8 22 33 44 46 48 48 48 48 48 48 49 49 49 49 49 49 49 LCS_GDT I 55 I 55 3 49 49 3 3 3 3 8 9 11 14 21 28 36 42 48 49 49 49 49 49 49 49 LCS_AVERAGE LCS_A: 80.67 ( 63.82 89.09 89.09 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 25 42 47 47 47 47 48 48 48 48 48 48 49 49 49 49 49 49 49 GDT PERCENT_AT 27.27 45.45 76.36 85.45 85.45 85.45 85.45 87.27 87.27 87.27 87.27 87.27 87.27 89.09 89.09 89.09 89.09 89.09 89.09 89.09 GDT RMS_LOCAL 0.34 0.71 1.05 1.19 1.19 1.19 1.19 1.40 1.40 1.40 1.40 1.40 1.40 1.79 1.79 1.79 1.79 1.79 1.79 1.79 GDT RMS_ALL_AT 2.46 1.98 1.93 1.85 1.85 1.85 1.85 1.82 1.82 1.82 1.82 1.82 1.82 1.79 1.79 1.79 1.79 1.79 1.79 1.79 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 7 H 7 0.884 6 0.036 0.036 1.265 85.952 34.381 LGA Q 8 Q 8 1.883 5 0.056 0.056 1.883 75.000 33.333 LGA H 9 H 9 1.721 6 0.067 0.067 1.721 77.143 30.857 LGA L 10 L 10 1.036 4 0.091 0.091 1.196 85.952 42.976 LGA L 11 L 11 1.253 4 0.037 0.037 1.313 81.429 40.714 LGA S 12 S 12 1.762 2 0.022 0.022 1.762 77.143 51.429 LGA E 13 E 13 1.138 5 0.031 0.031 1.224 85.952 38.201 LGA Y 14 Y 14 0.667 8 0.070 0.070 1.119 88.214 29.405 LGA Q 15 Q 15 1.314 5 0.035 0.035 1.427 83.690 37.196 LGA Q 16 Q 16 1.294 5 0.033 0.033 1.294 81.429 36.190 LGA I 17 I 17 0.573 4 0.022 0.022 0.822 90.476 45.238 LGA L 18 L 18 1.120 4 0.024 0.024 1.444 83.690 41.845 LGA T 19 T 19 1.174 3 0.021 0.021 1.311 81.429 46.531 LGA L 20 L 20 0.718 4 0.027 0.027 0.822 90.476 45.238 LGA S 21 S 21 0.613 2 0.079 0.079 0.654 90.476 60.317 LGA E 22 E 22 0.892 5 0.066 0.066 0.896 90.476 40.212 LGA Q 23 Q 23 0.985 5 0.069 0.069 0.985 90.476 40.212 LGA M 24 M 24 0.233 4 0.086 0.086 0.495 100.000 50.000 LGA L 25 L 25 0.241 4 0.102 0.102 0.252 100.000 50.000 LGA V 26 V 26 1.053 3 0.090 0.090 1.274 83.690 47.823 LGA L 27 L 27 1.260 4 0.161 0.161 1.772 79.286 39.643 LGA A 28 A 28 0.977 1 0.012 0.012 1.329 88.214 70.571 LGA T 29 T 29 0.925 3 0.020 0.020 1.583 83.810 47.891 LGA E 30 E 30 1.664 5 0.238 0.238 1.664 79.286 35.238 LGA G 31 G 31 1.851 0 0.306 0.306 1.851 77.143 77.143 LGA N 32 N 32 1.219 4 0.113 0.113 1.474 85.952 42.976 LGA W 33 W 33 0.692 10 0.168 0.168 0.929 90.476 25.850 LGA D 34 D 34 0.918 4 0.116 0.116 1.256 85.952 42.976 LGA A 35 A 35 0.911 1 0.360 0.360 2.211 84.048 67.238 LGA L 36 L 36 0.454 4 0.011 0.011 0.649 95.238 47.619 LGA V 37 V 37 1.438 3 0.033 0.033 1.830 79.286 45.306 LGA D 38 D 38 1.555 4 0.058 0.058 1.668 77.143 38.571 LGA L 39 L 39 1.226 4 0.088 0.088 1.277 85.952 42.976 LGA E 40 E 40 0.923 5 0.026 0.026 1.130 88.214 39.206 LGA M 41 M 41 1.759 4 0.032 0.032 1.884 72.857 36.429 LGA T 42 T 42 1.670 3 0.148 0.148 2.098 70.833 40.476 LGA Y 43 Y 43 0.795 8 0.051 0.051 1.068 88.214 29.405 LGA L 44 L 44 1.162 4 0.113 0.113 1.222 83.690 41.845 LGA K 45 K 45 1.851 5 0.062 0.062 1.851 72.857 32.381 LGA A 46 A 46 1.484 1 0.076 0.076 1.588 79.286 63.429 LGA V 47 V 47 0.601 3 0.055 0.055 0.715 90.476 51.701 LGA E 48 E 48 1.129 5 0.064 0.064 1.129 83.690 37.196 LGA S 49 S 49 1.446 2 0.077 0.077 1.507 79.286 52.857 LGA T 50 T 50 1.285 3 0.113 0.113 1.285 81.429 46.531 LGA A 51 A 51 0.780 1 0.057 0.057 0.868 95.238 76.190 LGA N 52 N 52 0.529 4 0.192 0.192 1.771 86.190 43.095 LGA I 53 I 53 2.078 4 0.556 0.556 2.182 70.952 35.476 LGA T 54 T 54 4.938 3 0.619 0.619 7.261 25.000 14.286 LGA I 55 I 55 8.308 4 0.598 0.598 8.923 6.905 3.452 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 390 196 50.26 55 SUMMARY(RMSD_GDC): 1.793 1.790 1.790 72.545 38.365 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 49 55 4.0 48 1.40 76.818 83.317 3.205 LGA_LOCAL RMSD: 1.398 Number of atoms: 48 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.823 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 1.793 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.559750 * X + 0.500059 * Y + 0.660773 * Z + -64.255882 Y_new = -0.136443 * X + 0.842132 * Y + -0.521725 * Z + -53.769382 Z_new = -0.817351 * X + 0.201878 * Y + 0.539613 * Z + 58.390419 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.239094 0.956799 0.357996 [DEG: -13.6991 54.8205 20.5117 ] ZXZ: 0.902449 1.000819 -1.328652 [DEG: 51.7065 57.3427 -76.1262 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0602TS328_1-D1 REMARK 2: T0602-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0602TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 49 55 4.0 48 1.40 83.317 1.79 REMARK ---------------------------------------------------------- MOLECULE T0602TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0602 REMARK MODEL 1 REMARK PARENT 3a7m_B ATOM 1 N HIS 7 12.949 -21.570 24.780 1.00 3.00 N ATOM 2 CA HIS 7 11.542 -21.654 24.427 1.00 3.00 C ATOM 3 C HIS 7 10.773 -22.609 25.322 1.00 3.00 C ATOM 4 O HIS 7 9.600 -22.380 25.591 1.00 3.00 O ATOM 5 N GLN 8 11.410 -23.677 25.793 1.00 3.00 N ATOM 6 CA GLN 8 10.692 -24.587 26.669 1.00 3.00 C ATOM 7 C GLN 8 10.624 -23.896 28.021 1.00 3.00 C ATOM 8 O GLN 8 9.624 -23.999 28.729 1.00 3.00 O ATOM 9 N HIS 9 11.686 -23.167 28.358 1.00 3.00 N ATOM 10 CA HIS 9 11.767 -22.411 29.615 1.00 3.00 C ATOM 11 C HIS 9 10.642 -21.385 29.680 1.00 3.00 C ATOM 12 O HIS 9 10.063 -21.126 30.725 1.00 3.00 O ATOM 13 N LEU 10 10.357 -20.791 28.532 1.00 3.00 N ATOM 14 CA LEU 10 9.295 -19.810 28.402 1.00 3.00 C ATOM 15 C LEU 10 7.983 -20.537 28.690 1.00 3.00 C ATOM 16 O LEU 10 7.277 -20.189 29.625 1.00 3.00 O ATOM 17 N LEU 11 7.679 -21.558 27.892 1.00 3.00 N ATOM 18 CA LEU 11 6.475 -22.371 28.058 1.00 3.00 C ATOM 19 C LEU 11 6.306 -22.836 29.501 1.00 3.00 C ATOM 20 O LEU 11 5.293 -22.576 30.142 1.00 3.00 O ATOM 21 N SER 12 7.315 -23.539 29.998 1.00 3.00 N ATOM 22 CA SER 12 7.313 -24.079 31.349 1.00 3.00 C ATOM 23 C SER 12 6.959 -23.041 32.406 1.00 3.00 C ATOM 24 O SER 12 6.179 -23.329 33.308 1.00 3.00 O ATOM 25 N GLU 13 7.538 -21.846 32.295 1.00 3.00 N ATOM 26 CA GLU 13 7.280 -20.758 33.240 1.00 3.00 C ATOM 27 C GLU 13 5.790 -20.519 33.350 1.00 3.00 C ATOM 28 O GLU 13 5.259 -20.368 34.449 1.00 3.00 O ATOM 29 N TYR 14 5.126 -20.468 32.196 1.00 3.00 N ATOM 30 CA TYR 14 3.695 -20.242 32.133 1.00 3.00 C ATOM 31 C TYR 14 2.906 -21.476 32.502 1.00 3.00 C ATOM 32 O TYR 14 1.744 -21.379 32.896 1.00 3.00 O ATOM 33 N GLN 15 3.538 -22.641 32.370 1.00 3.00 N ATOM 34 CA GLN 15 2.892 -23.882 32.764 1.00 3.00 C ATOM 35 C GLN 15 2.812 -23.790 34.281 1.00 3.00 C ATOM 36 O GLN 15 1.803 -24.156 34.887 1.00 3.00 O ATOM 37 N GLN 16 3.893 -23.284 34.876 1.00 3.00 N ATOM 38 CA GLN 16 4.003 -23.134 36.322 1.00 3.00 C ATOM 39 C GLN 16 2.941 -22.241 36.921 1.00 3.00 C ATOM 40 O GLN 16 2.398 -22.550 37.983 1.00 3.00 O ATOM 41 N ILE 17 2.664 -21.119 36.276 1.00 3.00 N ATOM 42 CA ILE 17 1.650 -20.229 36.793 1.00 3.00 C ATOM 43 C ILE 17 0.287 -20.852 36.615 1.00 3.00 C ATOM 44 O ILE 17 -0.520 -20.850 37.532 1.00 3.00 O ATOM 45 N LEU 18 0.050 -21.401 35.432 1.00 3.00 N ATOM 46 CA LEU 18 -1.220 -22.034 35.134 1.00 3.00 C ATOM 47 C LEU 18 -1.559 -23.000 36.268 1.00 3.00 C ATOM 48 O LEU 18 -2.713 -23.113 36.665 1.00 3.00 O ATOM 49 N THR 19 -0.549 -23.683 36.797 1.00 3.00 N ATOM 50 CA THR 19 -0.774 -24.627 37.872 1.00 3.00 C ATOM 51 C THR 19 -1.222 -23.909 39.149 1.00 3.00 C ATOM 52 O THR 19 -2.298 -24.188 39.680 1.00 3.00 O ATOM 53 N LEU 20 -0.397 -22.982 39.631 1.00 3.00 N ATOM 54 CA LEU 20 -0.682 -22.204 40.851 1.00 3.00 C ATOM 55 C LEU 20 -2.079 -21.581 40.857 1.00 3.00 C ATOM 56 O LEU 20 -2.716 -21.451 41.896 1.00 3.00 O ATOM 57 N SER 21 -2.548 -21.185 39.687 1.00 3.00 N ATOM 58 CA SER 21 -3.865 -20.589 39.600 1.00 3.00 C ATOM 59 C SER 21 -4.862 -21.663 39.968 1.00 3.00 C ATOM 60 O SER 21 -5.766 -21.439 40.757 1.00 3.00 O ATOM 61 N GLU 22 -4.681 -22.831 39.369 1.00 3.00 N ATOM 62 CA GLU 22 -5.539 -23.970 39.620 1.00 3.00 C ATOM 63 C GLU 22 -5.360 -24.410 41.059 1.00 3.00 C ATOM 64 O GLU 22 -6.265 -24.992 41.656 1.00 3.00 O ATOM 65 N GLN 23 -4.186 -24.138 41.615 1.00 3.00 N ATOM 66 CA GLN 23 -3.906 -24.481 43.001 1.00 3.00 C ATOM 67 C GLN 23 -4.823 -23.757 43.979 1.00 3.00 C ATOM 68 O GLN 23 -5.467 -24.417 44.787 1.00 3.00 O ATOM 69 N MET 24 -4.883 -22.419 43.887 1.00 3.00 N ATOM 70 CA MET 24 -5.699 -21.592 44.772 1.00 3.00 C ATOM 71 C MET 24 -7.183 -21.793 44.539 1.00 3.00 C ATOM 72 O MET 24 -7.976 -21.603 45.459 1.00 3.00 O ATOM 73 N LEU 25 -7.564 -22.138 43.310 1.00 3.00 N ATOM 74 CA LEU 25 -8.966 -22.347 42.997 1.00 3.00 C ATOM 75 C LEU 25 -9.439 -23.399 43.969 1.00 3.00 C ATOM 76 O LEU 25 -10.589 -23.389 44.398 1.00 3.00 O ATOM 77 N VAL 26 -8.535 -24.314 44.307 1.00 3.00 N ATOM 78 CA VAL 26 -8.821 -25.398 45.234 1.00 3.00 C ATOM 79 C VAL 26 -8.778 -24.899 46.673 1.00 3.00 C ATOM 80 O VAL 26 -9.697 -25.158 47.435 1.00 3.00 O ATOM 81 N LEU 27 -7.717 -24.195 47.050 1.00 3.00 N ATOM 82 CA LEU 27 -7.602 -23.634 48.397 1.00 3.00 C ATOM 83 C LEU 27 -8.896 -22.910 48.816 1.00 3.00 C ATOM 84 O LEU 27 -9.073 -22.554 49.987 1.00 3.00 O ATOM 85 N ALA 28 -9.786 -22.692 47.851 1.00 3.00 N ATOM 86 CA ALA 28 -11.051 -22.026 48.104 1.00 3.00 C ATOM 87 C ALA 28 -12.220 -22.976 47.853 1.00 3.00 C ATOM 88 O ALA 28 -13.207 -22.973 48.589 1.00 3.00 O ATOM 89 N THR 29 -12.121 -23.780 46.802 1.00 3.00 N ATOM 90 CA THR 29 -13.175 -24.737 46.493 1.00 3.00 C ATOM 91 C THR 29 -13.354 -25.659 47.685 1.00 3.00 C ATOM 92 O THR 29 -14.461 -26.119 47.975 1.00 3.00 O ATOM 93 N GLU 30 -12.251 -25.928 48.375 1.00 3.00 N ATOM 94 CA GLU 30 -12.285 -26.800 49.534 1.00 3.00 C ATOM 95 C GLU 30 -12.593 -26.007 50.797 1.00 3.00 C ATOM 96 O GLU 30 -13.367 -26.460 51.643 1.00 3.00 O ATOM 97 N GLY 31 -11.987 -24.832 50.937 1.00 3.00 N ATOM 98 CA GLY 31 -12.274 -24.028 52.105 1.00 3.00 C ATOM 99 C GLY 31 -11.081 -23.416 52.795 1.00 3.00 C ATOM 100 O GLY 31 -11.251 -22.644 53.732 1.00 3.00 O ATOM 101 N ASN 32 -9.873 -23.734 52.352 1.00 3.00 N ATOM 102 CA ASN 32 -8.703 -23.163 53.015 1.00 3.00 C ATOM 103 C ASN 32 -8.385 -21.716 52.666 1.00 3.00 C ATOM 104 O ASN 32 -7.585 -21.458 51.769 1.00 3.00 O ATOM 105 N TRP 33 -8.983 -20.766 53.378 1.00 3.00 N ATOM 106 CA TRP 33 -8.692 -19.366 53.099 1.00 3.00 C ATOM 107 C TRP 33 -7.438 -18.938 53.848 1.00 3.00 C ATOM 108 O TRP 33 -6.628 -18.174 53.316 1.00 3.00 O ATOM 109 N ASP 34 -7.276 -19.424 55.079 1.00 3.00 N ATOM 110 CA ASP 34 -6.101 -19.084 55.883 1.00 3.00 C ATOM 111 C ASP 34 -4.856 -19.323 55.023 1.00 3.00 C ATOM 112 O ASP 34 -3.930 -18.506 55.004 1.00 3.00 O ATOM 113 N ALA 35 -4.869 -20.444 54.305 1.00 3.00 N ATOM 114 CA ALA 35 -3.775 -20.819 53.424 1.00 3.00 C ATOM 115 C ALA 35 -3.769 -19.894 52.202 1.00 3.00 C ATOM 116 O ALA 35 -2.875 -19.048 52.040 1.00 3.00 O ATOM 117 N LEU 36 -4.789 -20.053 51.359 1.00 3.00 N ATOM 118 CA LEU 36 -4.945 -19.259 50.147 1.00 3.00 C ATOM 119 C LEU 36 -4.419 -17.834 50.281 1.00 3.00 C ATOM 120 O LEU 36 -3.748 -17.332 49.388 1.00 3.00 O ATOM 121 N VAL 37 -4.754 -17.174 51.384 1.00 3.00 N ATOM 122 CA VAL 37 -4.304 -15.806 51.626 1.00 3.00 C ATOM 123 C VAL 37 -2.798 -15.667 51.599 1.00 3.00 C ATOM 124 O VAL 37 -2.272 -14.645 51.148 1.00 3.00 O ATOM 125 N ASP 38 -2.105 -16.691 52.090 1.00 3.00 N ATOM 126 CA ASP 38 -0.636 -16.698 52.125 1.00 3.00 C ATOM 127 C ASP 38 -0.044 -16.923 50.741 1.00 3.00 C ATOM 128 O ASP 38 0.855 -16.196 50.307 1.00 3.00 O ATOM 129 N LEU 39 -0.558 -17.940 50.059 1.00 3.00 N ATOM 130 CA LEU 39 -0.088 -18.293 48.725 1.00 3.00 C ATOM 131 C LEU 39 -0.463 -17.311 47.616 1.00 3.00 C ATOM 132 O LEU 39 0.018 -17.443 46.513 1.00 3.00 O ATOM 133 N GLU 40 -1.310 -16.336 47.885 1.00 3.00 N ATOM 134 CA GLU 40 -1.646 -15.419 46.826 1.00 3.00 C ATOM 135 C GLU 40 -0.477 -14.462 46.618 1.00 3.00 C ATOM 136 O GLU 40 -0.064 -14.203 45.486 1.00 3.00 O ATOM 137 N MET 41 0.086 -13.964 47.712 1.00 3.00 N ATOM 138 CA MET 41 1.207 -13.025 47.649 1.00 3.00 C ATOM 139 C MET 41 2.286 -13.520 46.715 1.00 3.00 C ATOM 140 O MET 41 2.903 -12.733 45.980 1.00 3.00 O ATOM 141 N THR 42 2.488 -14.837 46.753 1.00 3.00 N ATOM 142 CA THR 42 3.493 -15.523 45.945 1.00 3.00 C ATOM 143 C THR 42 3.014 -15.610 44.504 1.00 3.00 C ATOM 144 O THR 42 3.660 -15.107 43.593 1.00 3.00 O ATOM 145 N TYR 43 1.874 -16.261 44.310 1.00 3.00 N ATOM 146 CA TYR 43 1.277 -16.411 42.995 1.00 3.00 C ATOM 147 C TYR 43 1.351 -15.077 42.274 1.00 3.00 C ATOM 148 O TYR 43 1.565 -15.032 41.071 1.00 3.00 O ATOM 149 N LEU 44 1.189 -13.983 43.008 1.00 3.00 N ATOM 150 CA LEU 44 1.259 -12.680 42.370 1.00 3.00 C ATOM 151 C LEU 44 2.712 -12.379 42.040 1.00 3.00 C ATOM 152 O LEU 44 3.044 -12.073 40.899 1.00 3.00 O ATOM 153 N LYS 45 3.575 -12.467 43.047 1.00 3.00 N ATOM 154 CA LYS 45 5.000 -12.217 42.853 1.00 3.00 C ATOM 155 C LYS 45 5.545 -13.100 41.735 1.00 3.00 C ATOM 156 O LYS 45 6.540 -12.759 41.097 1.00 3.00 O ATOM 157 N ALA 46 4.883 -14.233 41.501 1.00 3.00 N ATOM 158 CA ALA 46 5.293 -15.182 40.469 1.00 3.00 C ATOM 159 C ALA 46 4.882 -14.688 39.090 1.00 3.00 C ATOM 160 O ALA 46 5.693 -14.631 38.174 1.00 3.00 O ATOM 161 N VAL 47 3.613 -14.336 38.942 1.00 3.00 N ATOM 162 CA VAL 47 3.135 -13.839 37.670 1.00 3.00 C ATOM 163 C VAL 47 4.017 -12.663 37.298 1.00 3.00 C ATOM 164 O VAL 47 4.435 -12.533 36.160 1.00 3.00 O ATOM 165 N GLU 48 4.320 -11.816 38.276 1.00 3.00 N ATOM 166 CA GLU 48 5.160 -10.634 38.057 1.00 3.00 C ATOM 167 C GLU 48 6.563 -10.929 37.541 1.00 3.00 C ATOM 168 O GLU 48 7.037 -10.279 36.619 1.00 3.00 O ATOM 169 N SER 49 7.234 -11.899 38.144 1.00 3.00 N ATOM 170 CA SER 49 8.584 -12.253 37.722 1.00 3.00 C ATOM 171 C SER 49 8.610 -12.735 36.272 1.00 3.00 C ATOM 172 O SER 49 9.395 -12.236 35.463 1.00 3.00 O ATOM 173 N THR 50 7.754 -13.705 35.957 1.00 3.00 N ATOM 174 CA THR 50 7.677 -14.265 34.615 1.00 3.00 C ATOM 175 C THR 50 7.333 -13.231 33.552 1.00 3.00 C ATOM 176 O THR 50 7.431 -13.498 32.360 1.00 3.00 O ATOM 177 N ALA 51 6.942 -12.041 33.975 1.00 3.00 N ATOM 178 CA ALA 51 6.591 -11.007 33.010 1.00 3.00 C ATOM 179 C ALA 51 7.755 -10.108 32.639 1.00 3.00 C ATOM 180 O ALA 51 7.780 -9.542 31.544 1.00 3.00 O ATOM 181 N ASN 52 8.704 -9.955 33.558 1.00 3.00 N ATOM 182 CA ASN 52 9.866 -9.121 33.292 1.00 3.00 C ATOM 183 C ASN 52 10.993 -9.991 32.769 1.00 3.00 C ATOM 184 O ASN 52 12.161 -9.591 32.744 1.00 3.00 O ATOM 185 N ILE 53 10.622 -11.194 32.350 1.00 3.00 N ATOM 186 CA ILE 53 11.576 -12.138 31.787 1.00 3.00 C ATOM 187 C ILE 53 11.738 -11.697 30.339 1.00 3.00 C ATOM 188 O ILE 53 11.012 -10.822 29.878 1.00 3.00 O ATOM 189 N THR 54 12.686 -12.296 29.627 1.00 3.00 N ATOM 190 CA THR 54 12.900 -11.949 28.230 1.00 3.00 C ATOM 191 C THR 54 12.315 -13.059 27.368 1.00 3.00 C ATOM 192 O THR 54 12.755 -14.203 27.457 1.00 3.00 O ATOM 193 N ILE 55 11.309 -12.721 26.562 1.00 3.00 N ATOM 194 CA ILE 55 10.681 -13.695 25.679 1.00 3.00 C ATOM 195 C ILE 55 11.737 -14.150 24.676 1.00 3.00 C ATOM 196 O ILE 55 12.352 -13.329 24.005 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 196 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 29.89 86.5 96 88.9 108 ARMSMC SECONDARY STRUCTURE . . 28.69 90.8 87 88.8 98 ARMSMC SURFACE . . . . . . . . 31.54 86.2 80 87.0 92 ARMSMC BURIED . . . . . . . . 19.72 87.5 16 100.0 16 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.79 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.79 49 89.1 55 CRMSCA CRN = ALL/NP . . . . . 0.0366 CRMSCA SECONDARY STRUCTURE . . 1.42 44 89.8 49 CRMSCA SURFACE . . . . . . . . 1.91 41 87.2 47 CRMSCA BURIED . . . . . . . . 1.03 8 100.0 8 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.79 196 71.5 274 CRMSMC SECONDARY STRUCTURE . . 1.46 176 71.8 245 CRMSMC SURFACE . . . . . . . . 1.91 164 70.1 234 CRMSMC BURIED . . . . . . . . 1.01 32 80.0 40 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 217 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 171 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 192 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 188 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.79 196 44.9 437 CRMSALL SECONDARY STRUCTURE . . 1.46 176 45.4 388 CRMSALL SURFACE . . . . . . . . 1.91 164 43.6 376 CRMSALL BURIED . . . . . . . . 1.01 32 52.5 61 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.869 0.446 0.513 49 89.1 55 ERRCA SECONDARY STRUCTURE . . 1.836 0.454 0.530 44 89.8 49 ERRCA SURFACE . . . . . . . . 1.825 0.424 0.491 41 87.2 47 ERRCA BURIED . . . . . . . . 2.096 0.560 0.627 8 100.0 8 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.899 0.453 0.527 196 71.5 274 ERRMC SECONDARY STRUCTURE . . 1.858 0.458 0.537 176 71.8 245 ERRMC SURFACE . . . . . . . . 1.862 0.434 0.508 164 70.1 234 ERRMC BURIED . . . . . . . . 2.088 0.551 0.624 32 80.0 40 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 217 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 171 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 192 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 188 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.899 0.453 0.527 196 44.9 437 ERRALL SECONDARY STRUCTURE . . 1.858 0.458 0.537 176 45.4 388 ERRALL SURFACE . . . . . . . . 1.862 0.434 0.508 164 43.6 376 ERRALL BURIED . . . . . . . . 2.088 0.551 0.624 32 52.5 61 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 18 45 47 48 49 49 55 DISTCA CA (P) 32.73 81.82 85.45 87.27 89.09 55 DISTCA CA (RMS) 0.76 1.22 1.27 1.43 1.79 DISTCA ALL (N) 72 182 188 190 196 196 437 DISTALL ALL (P) 16.48 41.65 43.02 43.48 44.85 437 DISTALL ALL (RMS) 0.75 1.20 1.24 1.32 1.79 DISTALL END of the results output