####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 37 ( 300), selected 37 , name T0602TS301_1-D1 # Molecule2: number of CA atoms 55 ( 437), selected 37 , name T0602-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0602TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 3 - 39 1.01 1.01 LCS_AVERAGE: 67.27 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 3 - 39 1.01 1.01 LCS_AVERAGE: 67.27 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 3 - 38 0.92 1.02 LCS_AVERAGE: 65.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 37 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 3 A 3 36 37 37 9 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT M 4 M 4 36 37 37 6 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT E 5 E 5 36 37 37 5 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT R 6 R 6 36 37 37 5 19 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT H 7 H 7 36 37 37 5 22 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT Q 8 Q 8 36 37 37 5 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT H 9 H 9 36 37 37 16 27 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 10 L 10 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 11 L 11 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT S 12 S 12 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT E 13 E 13 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT Y 14 Y 14 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT Q 15 Q 15 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT Q 16 Q 16 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT I 17 I 17 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 18 L 18 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT T 19 T 19 36 37 37 14 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 20 L 20 36 37 37 13 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT S 21 S 21 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT E 22 E 22 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT Q 23 Q 23 36 37 37 12 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT M 24 M 24 36 37 37 13 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 25 L 25 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT V 26 V 26 36 37 37 7 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 27 L 27 36 37 37 13 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT A 28 A 28 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT T 29 T 29 36 37 37 11 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT E 30 E 30 36 37 37 7 18 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT G 31 G 31 36 37 37 15 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT N 32 N 32 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT W 33 W 33 36 37 37 4 18 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT D 34 D 34 36 37 37 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT A 35 A 35 36 37 37 13 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 36 L 36 36 37 37 4 22 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT V 37 V 37 36 37 37 4 15 22 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT D 38 D 38 36 37 37 4 6 33 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_GDT L 39 L 39 33 37 37 4 11 18 34 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 LCS_AVERAGE LCS_A: 66.62 ( 65.31 67.27 67.27 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 28 34 36 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 GDT PERCENT_AT 29.09 50.91 61.82 65.45 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 67.27 GDT RMS_LOCAL 0.33 0.62 0.81 0.92 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 GDT RMS_ALL_AT 1.24 1.07 1.05 1.02 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 1.01 # Checking swapping # possible swapping detected: E 5 E 5 # possible swapping detected: Y 14 Y 14 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 3 A 3 0.677 0 0.377 0.383 1.965 86.071 83.429 LGA M 4 M 4 0.944 0 0.070 1.107 4.574 90.476 75.774 LGA E 5 E 5 0.983 0 0.601 0.891 3.302 78.095 83.016 LGA R 6 R 6 1.547 0 0.534 0.955 7.528 73.214 46.017 LGA H 7 H 7 1.255 0 0.116 1.413 3.456 85.952 74.429 LGA Q 8 Q 8 1.425 0 0.132 1.310 4.246 81.548 76.825 LGA H 9 H 9 1.402 0 0.123 1.103 7.664 81.429 51.190 LGA L 10 L 10 0.564 0 0.088 1.395 4.361 95.238 76.964 LGA L 11 L 11 0.595 0 0.015 0.109 1.565 90.595 85.000 LGA S 12 S 12 1.119 0 0.085 0.423 2.023 88.214 81.746 LGA E 13 E 13 0.890 0 0.059 0.878 3.786 92.857 78.571 LGA Y 14 Y 14 0.476 0 0.016 1.011 5.991 97.619 67.897 LGA Q 15 Q 15 0.547 0 0.077 1.391 6.148 95.238 69.735 LGA Q 16 Q 16 0.471 0 0.052 0.851 2.904 97.619 86.984 LGA I 17 I 17 0.371 0 0.047 0.783 2.424 97.619 92.083 LGA L 18 L 18 0.366 0 0.036 1.390 3.937 100.000 83.155 LGA T 19 T 19 0.313 0 0.068 0.099 0.354 100.000 100.000 LGA L 20 L 20 0.425 0 0.026 0.177 0.629 100.000 98.810 LGA S 21 S 21 0.381 0 0.046 0.776 2.473 100.000 94.127 LGA E 22 E 22 0.294 0 0.017 0.167 0.566 100.000 98.942 LGA Q 23 Q 23 0.759 0 0.016 0.932 4.970 90.476 73.175 LGA M 24 M 24 0.815 0 0.035 1.139 5.669 90.476 73.512 LGA L 25 L 25 0.308 0 0.068 1.404 3.335 100.000 83.095 LGA V 26 V 26 0.982 0 0.053 1.239 3.044 90.476 80.884 LGA L 27 L 27 0.827 0 0.030 0.212 1.214 92.857 88.274 LGA A 28 A 28 0.180 0 0.068 0.073 0.544 97.619 98.095 LGA T 29 T 29 0.596 0 0.045 1.053 2.606 90.595 81.020 LGA E 30 E 30 1.204 0 0.020 0.676 4.104 85.952 72.063 LGA G 31 G 31 0.553 0 0.153 0.153 0.553 97.619 97.619 LGA N 32 N 32 0.530 0 0.103 1.232 3.660 95.238 77.857 LGA W 33 W 33 1.318 0 0.122 1.252 12.526 83.690 35.408 LGA D 34 D 34 0.941 0 0.084 1.191 4.951 88.214 73.452 LGA A 35 A 35 0.592 0 0.206 0.214 1.204 90.595 90.571 LGA L 36 L 36 1.203 0 0.065 1.016 4.739 81.548 72.083 LGA V 37 V 37 1.985 0 0.027 1.189 4.632 70.833 64.626 LGA D 38 D 38 1.597 0 0.127 1.025 4.893 72.857 63.036 LGA L 39 L 39 2.613 0 0.107 0.140 3.452 55.476 60.119 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 37 148 148 100.00 300 300 100.00 55 SUMMARY(RMSD_GDC): 1.009 1.048 2.578 60.115 52.538 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 37 55 4.0 37 1.01 62.727 65.447 3.336 LGA_LOCAL RMSD: 1.009 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.009 Number of assigned atoms: 37 Std_ASGN_ATOMS RMSD: 1.009 Standard rmsd on all 37 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.303399 * X + -0.932787 * Y + -0.194570 * Z + -4.432978 Y_new = -0.318224 * X + 0.291661 * Y + -0.902035 * Z + -16.075466 Z_new = 0.898155 * X + -0.211760 * Y + -0.385325 * Z + 42.306763 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.332351 -1.115556 -2.639086 [DEG: -133.6339 -63.9166 -151.2085 ] ZXZ: -0.212446 1.966356 1.802340 [DEG: -12.1723 112.6639 103.2665 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0602TS301_1-D1 REMARK 2: T0602-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0602TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 37 55 4.0 37 1.01 65.447 1.01 REMARK ---------------------------------------------------------- MOLECULE T0602TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0602 REMARK MODEL 1 REMARK PARENT N/A ATOM 2 N ALA 3 16.404 -20.336 19.531 1.00 0.00 N ATOM 3 CA ALA 3 15.655 -19.996 20.738 1.00 0.00 C ATOM 4 CB ALA 3 14.452 -19.133 20.390 1.00 0.00 C ATOM 5 O ALA 3 14.216 -21.132 22.289 1.00 0.00 O ATOM 6 C ALA 3 15.175 -21.221 21.524 1.00 0.00 C ATOM 7 N MET 4 15.843 -22.359 21.335 1.00 0.00 N ATOM 8 CA MET 4 15.472 -23.585 22.041 1.00 0.00 C ATOM 9 CB MET 4 16.426 -24.723 21.674 1.00 0.00 C ATOM 10 CG MET 4 16.112 -26.041 22.362 1.00 0.00 C ATOM 11 SD MET 4 17.297 -27.338 21.956 1.00 0.00 S ATOM 12 CE MET 4 18.739 -26.773 22.857 1.00 0.00 C ATOM 13 O MET 4 14.423 -23.375 24.195 1.00 0.00 O ATOM 14 C MET 4 15.473 -23.347 23.553 1.00 0.00 C ATOM 15 N GLU 5 16.651 -23.117 24.129 1.00 0.00 N ATOM 16 CA GLU 5 16.722 -22.829 25.556 1.00 0.00 C ATOM 17 CB GLU 5 18.180 -22.789 26.022 1.00 0.00 C ATOM 18 CG GLU 5 18.972 -21.611 25.478 1.00 0.00 C ATOM 19 CD GLU 5 20.417 -21.621 25.937 1.00 0.00 C ATOM 20 OE1 GLU 5 20.944 -22.719 26.216 1.00 0.00 O ATOM 21 OE2 GLU 5 21.022 -20.531 26.017 1.00 0.00 O ATOM 22 O GLU 5 15.794 -20.850 24.607 1.00 0.00 O ATOM 23 C GLU 5 15.986 -21.503 25.631 1.00 0.00 C ATOM 24 N ARG 6 15.570 -21.089 26.814 1.00 0.00 N ATOM 25 CA ARG 6 14.897 -19.798 26.917 1.00 0.00 C ATOM 26 CB ARG 6 15.884 -18.657 26.664 1.00 0.00 C ATOM 27 CG ARG 6 16.972 -18.533 27.718 1.00 0.00 C ATOM 28 CD ARG 6 18.003 -17.487 27.326 1.00 0.00 C ATOM 29 NE ARG 6 18.765 -17.885 26.145 1.00 0.00 N ATOM 30 CZ ARG 6 19.509 -17.055 25.419 1.00 0.00 C ATOM 31 NH1 ARG 6 20.166 -17.508 24.360 1.00 0.00 H ATOM 32 NH2 ARG 6 19.590 -15.776 25.755 1.00 0.00 H ATOM 33 O ARG 6 13.817 -19.085 24.897 1.00 0.00 O ATOM 34 C ARG 6 13.740 -19.752 25.926 1.00 0.00 C ATOM 35 N HIS 7 12.675 -20.463 26.264 1.00 0.00 N ATOM 36 CA HIS 7 11.475 -20.586 25.447 1.00 0.00 C ATOM 37 CB HIS 7 11.836 -20.578 23.959 1.00 0.00 C ATOM 38 CG HIS 7 10.649 -20.606 23.049 1.00 0.00 C ATOM 39 CD2 HIS 7 10.037 -21.592 22.169 1.00 0.00 C ATOM 40 ND1 HIS 7 9.817 -19.522 22.879 1.00 0.00 N ATOM 41 CE1 HIS 7 8.845 -19.847 22.006 1.00 0.00 C ATOM 42 NE2 HIS 7 8.972 -21.088 21.576 1.00 0.00 N ATOM 43 O HIS 7 9.710 -22.073 26.125 1.00 0.00 O ATOM 44 C HIS 7 10.915 -21.880 25.969 1.00 0.00 C ATOM 45 N GLN 8 11.845 -22.779 26.226 1.00 0.00 N ATOM 46 CA GLN 8 11.512 -24.056 26.776 1.00 0.00 C ATOM 47 CB GLN 8 12.650 -25.052 26.546 1.00 0.00 C ATOM 48 CG GLN 8 13.910 -24.749 27.337 1.00 0.00 C ATOM 49 CD GLN 8 15.025 -25.739 27.062 1.00 0.00 C ATOM 50 OE1 GLN 8 14.805 -26.774 26.433 1.00 0.00 O ATOM 51 NE2 GLN 8 16.225 -25.424 27.533 1.00 0.00 N ATOM 52 O GLN 8 10.572 -24.458 28.946 1.00 0.00 O ATOM 53 C GLN 8 11.249 -23.721 28.236 1.00 0.00 C ATOM 54 N HIS 9 11.747 -22.573 28.684 1.00 0.00 N ATOM 55 CA HIS 9 11.544 -22.246 30.079 1.00 0.00 C ATOM 56 CB HIS 9 12.770 -21.527 30.645 1.00 0.00 C ATOM 57 CG HIS 9 13.998 -22.383 30.703 1.00 0.00 C ATOM 58 CD2 HIS 9 15.291 -22.389 30.033 1.00 0.00 C ATOM 59 ND1 HIS 9 14.106 -23.473 31.536 1.00 0.00 N ATOM 60 CE1 HIS 9 15.316 -24.036 31.366 1.00 0.00 C ATOM 61 NE2 HIS 9 16.032 -23.391 30.465 1.00 0.00 N ATOM 62 O HIS 9 9.692 -21.390 31.321 1.00 0.00 O ATOM 63 C HIS 9 10.305 -21.387 30.261 1.00 0.00 C ATOM 64 N LEU 10 9.934 -20.653 29.221 1.00 0.00 N ATOM 65 CA LEU 10 8.739 -19.831 29.287 1.00 0.00 C ATOM 66 CB LEU 10 8.665 -18.896 28.079 1.00 0.00 C ATOM 67 CG LEU 10 9.721 -17.792 28.011 1.00 0.00 C ATOM 68 CD1 LEU 10 9.627 -17.037 26.693 1.00 0.00 C ATOM 69 CD2 LEU 10 9.574 -16.833 29.182 1.00 0.00 C ATOM 70 O LEU 10 6.531 -20.529 29.919 1.00 0.00 O ATOM 71 C LEU 10 7.584 -20.812 29.355 1.00 0.00 C ATOM 72 N LEU 11 7.810 -21.981 28.772 1.00 0.00 N ATOM 73 CA LEU 11 6.826 -23.044 28.760 1.00 0.00 C ATOM 74 CB LEU 11 7.278 -24.182 27.842 1.00 0.00 C ATOM 75 CG LEU 11 6.338 -25.385 27.741 1.00 0.00 C ATOM 76 CD1 LEU 11 4.981 -24.964 27.202 1.00 0.00 C ATOM 77 CD2 LEU 11 6.944 -26.468 26.859 1.00 0.00 C ATOM 78 O LEU 11 5.484 -23.702 30.630 1.00 0.00 O ATOM 79 C LEU 11 6.616 -23.532 30.187 1.00 0.00 C ATOM 80 N SER 12 7.708 -23.749 30.913 1.00 0.00 N ATOM 81 CA SER 12 7.601 -24.226 32.285 1.00 0.00 C ATOM 82 CB SER 12 8.926 -24.838 32.742 1.00 0.00 C ATOM 83 OG SER 12 9.944 -23.856 32.819 1.00 0.00 O ATOM 84 O SER 12 6.567 -23.374 34.271 1.00 0.00 O ATOM 85 C SER 12 7.193 -23.116 33.249 1.00 0.00 C ATOM 86 N GLU 13 7.551 -21.881 32.925 1.00 0.00 N ATOM 87 CA GLU 13 7.188 -20.749 33.769 1.00 0.00 C ATOM 88 CB GLU 13 7.916 -19.485 33.310 1.00 0.00 C ATOM 89 CG GLU 13 9.415 -19.507 33.555 1.00 0.00 C ATOM 90 CD GLU 13 10.110 -18.265 33.035 1.00 0.00 C ATOM 91 OE1 GLU 13 9.460 -17.478 32.317 1.00 0.00 O ATOM 92 OE2 GLU 13 11.306 -18.077 33.344 1.00 0.00 O ATOM 93 O GLU 13 5.053 -20.265 34.735 1.00 0.00 O ATOM 94 C GLU 13 5.678 -20.566 33.723 1.00 0.00 C ATOM 95 N TYR 14 5.098 -20.744 32.540 1.00 0.00 N ATOM 96 CA TYR 14 3.663 -20.621 32.380 1.00 0.00 C ATOM 97 CB TYR 14 3.291 -20.600 30.895 1.00 0.00 C ATOM 98 CG TYR 14 1.810 -20.431 30.638 1.00 0.00 C ATOM 99 CD1 TYR 14 1.206 -19.186 30.755 1.00 0.00 C ATOM 100 CD2 TYR 14 1.022 -21.516 30.279 1.00 0.00 C ATOM 101 CE1 TYR 14 -0.146 -19.020 30.523 1.00 0.00 C ATOM 102 CE2 TYR 14 -0.332 -21.371 30.044 1.00 0.00 C ATOM 103 CZ TYR 14 -0.913 -20.109 30.168 1.00 0.00 C ATOM 104 OH TYR 14 -2.259 -19.947 29.935 1.00 0.00 H ATOM 105 O TYR 14 1.878 -21.553 33.669 1.00 0.00 O ATOM 106 C TYR 14 2.944 -21.754 33.089 1.00 0.00 C ATOM 107 N GLN 15 3.516 -22.952 33.039 1.00 0.00 N ATOM 108 CA GLN 15 2.897 -24.080 33.713 1.00 0.00 C ATOM 109 CB GLN 15 3.608 -25.383 33.336 1.00 0.00 C ATOM 110 CG GLN 15 3.034 -26.619 34.009 1.00 0.00 C ATOM 111 CD GLN 15 1.576 -26.849 33.663 1.00 0.00 C ATOM 112 OE1 GLN 15 0.822 -27.415 34.453 1.00 0.00 O ATOM 113 NE2 GLN 15 1.175 -26.408 32.475 1.00 0.00 N ATOM 114 O GLN 15 2.082 -24.240 35.957 1.00 0.00 O ATOM 115 C GLN 15 2.954 -23.817 35.208 1.00 0.00 C ATOM 116 N GLN 16 3.998 -23.107 35.625 1.00 0.00 N ATOM 117 CA GLN 16 4.195 -22.741 37.021 1.00 0.00 C ATOM 118 CB GLN 16 5.527 -22.008 37.198 1.00 0.00 C ATOM 119 CG GLN 16 5.832 -21.616 38.635 1.00 0.00 C ATOM 120 CD GLN 16 7.156 -20.891 38.771 1.00 0.00 C ATOM 121 OE1 GLN 16 7.488 -20.024 37.963 1.00 0.00 O ATOM 122 NE2 GLN 16 7.920 -21.244 39.799 1.00 0.00 N ATOM 123 O GLN 16 2.359 -22.119 38.455 1.00 0.00 O ATOM 124 C GLN 16 2.998 -21.875 37.437 1.00 0.00 C ATOM 125 N ILE 17 2.693 -20.873 36.623 1.00 0.00 N ATOM 126 CA ILE 17 1.571 -19.989 36.899 1.00 0.00 C ATOM 127 CB ILE 17 1.521 -18.815 35.903 1.00 0.00 C ATOM 128 CG1 ILE 17 2.337 -17.633 36.431 1.00 0.00 C ATOM 129 CG2 ILE 17 0.080 -18.423 35.615 1.00 0.00 C ATOM 130 CD1 ILE 17 3.702 -18.022 36.959 1.00 0.00 C ATOM 131 O ILE 17 -0.634 -20.487 37.693 1.00 0.00 O ATOM 132 C ILE 17 0.239 -20.742 36.871 1.00 0.00 C ATOM 133 N LEU 18 0.079 -21.665 35.932 1.00 0.00 N ATOM 134 CA LEU 18 -1.161 -22.428 35.855 1.00 0.00 C ATOM 135 CB LEU 18 -1.171 -23.309 34.604 1.00 0.00 C ATOM 136 CG LEU 18 -1.263 -22.577 33.262 1.00 0.00 C ATOM 137 CD1 LEU 18 -1.097 -23.551 32.106 1.00 0.00 C ATOM 138 CD2 LEU 18 -2.587 -21.838 33.144 1.00 0.00 C ATOM 139 O LEU 18 -2.461 -23.466 37.574 1.00 0.00 O ATOM 140 C LEU 18 -1.339 -23.279 37.103 1.00 0.00 C ATOM 141 N THR 19 -0.236 -23.776 37.653 1.00 0.00 N ATOM 142 CA THR 19 -0.308 -24.608 38.849 1.00 0.00 C ATOM 143 CB THR 19 1.047 -25.272 39.157 1.00 0.00 C ATOM 144 CG2 THR 19 0.951 -26.118 40.417 1.00 0.00 C ATOM 145 OG1 THR 19 1.428 -26.117 38.066 1.00 0.00 O ATOM 146 O THR 19 -1.598 -24.309 40.843 1.00 0.00 O ATOM 147 C THR 19 -0.760 -23.832 40.085 1.00 0.00 C ATOM 148 N LEU 20 -0.214 -22.636 40.286 1.00 0.00 N ATOM 149 CA LEU 20 -0.596 -21.833 41.440 1.00 0.00 C ATOM 150 CB LEU 20 0.340 -20.633 41.593 1.00 0.00 C ATOM 151 CG LEU 20 1.787 -20.947 41.977 1.00 0.00 C ATOM 152 CD1 LEU 20 2.636 -19.684 41.946 1.00 0.00 C ATOM 153 CD2 LEU 20 1.850 -21.592 43.354 1.00 0.00 C ATOM 154 O LEU 20 -2.749 -21.258 42.308 1.00 0.00 O ATOM 155 C LEU 20 -2.036 -21.371 41.312 1.00 0.00 C ATOM 156 N SER 21 -2.467 -21.108 40.083 1.00 0.00 N ATOM 157 CA SER 21 -3.841 -20.689 39.848 1.00 0.00 C ATOM 158 CB SER 21 -4.028 -20.257 38.393 1.00 0.00 C ATOM 159 OG SER 21 -3.279 -19.089 38.107 1.00 0.00 O ATOM 160 O SER 21 -5.813 -21.642 40.842 1.00 0.00 O ATOM 161 C SER 21 -4.775 -21.842 40.211 1.00 0.00 C ATOM 162 N GLU 22 -4.389 -23.054 39.822 1.00 0.00 N ATOM 163 CA GLU 22 -5.169 -24.248 40.140 1.00 0.00 C ATOM 164 CB GLU 22 -4.580 -25.474 39.441 1.00 0.00 C ATOM 165 CG GLU 22 -5.218 -25.791 38.097 1.00 0.00 C ATOM 166 CD GLU 22 -4.303 -26.594 37.194 1.00 0.00 C ATOM 167 OE1 GLU 22 -3.459 -27.349 37.722 1.00 0.00 O ATOM 168 OE2 GLU 22 -4.432 -26.472 35.958 1.00 0.00 O ATOM 169 O GLU 22 -6.233 -24.789 42.217 1.00 0.00 O ATOM 170 C GLU 22 -5.203 -24.441 41.643 1.00 0.00 C ATOM 171 N GLN 23 -4.062 -24.218 42.282 1.00 0.00 N ATOM 172 CA GLN 23 -3.969 -24.360 43.726 1.00 0.00 C ATOM 173 CB GLN 23 -2.519 -24.197 44.186 1.00 0.00 C ATOM 174 CG GLN 23 -1.646 -25.415 43.938 1.00 0.00 C ATOM 175 CD GLN 23 -0.175 -25.135 44.166 1.00 0.00 C ATOM 176 OE1 GLN 23 0.198 -24.466 45.130 1.00 0.00 O ATOM 177 NE2 GLN 23 0.668 -25.646 43.277 1.00 0.00 N ATOM 178 O GLN 23 -5.586 -23.665 45.359 1.00 0.00 O ATOM 179 C GLN 23 -4.871 -23.339 44.410 1.00 0.00 C ATOM 180 N MET 24 -4.840 -22.107 43.913 1.00 0.00 N ATOM 181 CA MET 24 -5.660 -21.037 44.457 1.00 0.00 C ATOM 182 CB MET 24 -5.386 -19.725 43.719 1.00 0.00 C ATOM 183 CG MET 24 -6.214 -18.550 44.214 1.00 0.00 C ATOM 184 SD MET 24 -5.935 -17.049 43.255 1.00 0.00 S ATOM 185 CE MET 24 -6.755 -17.471 41.719 1.00 0.00 C ATOM 186 O MET 24 -7.895 -21.321 45.325 1.00 0.00 O ATOM 187 C MET 24 -7.135 -21.420 44.356 1.00 0.00 C ATOM 188 N LEU 25 -7.543 -21.859 43.172 1.00 0.00 N ATOM 189 CA LEU 25 -8.926 -22.245 42.962 1.00 0.00 C ATOM 190 CB LEU 25 -9.157 -22.635 41.500 1.00 0.00 C ATOM 191 CG LEU 25 -9.086 -21.500 40.475 1.00 0.00 C ATOM 192 CD1 LEU 25 -9.151 -22.049 39.058 1.00 0.00 C ATOM 193 CD2 LEU 25 -10.208 -20.499 40.707 1.00 0.00 C ATOM 194 O LEU 25 -10.462 -23.430 44.376 1.00 0.00 O ATOM 195 C LEU 25 -9.335 -23.400 43.874 1.00 0.00 C ATOM 196 N VAL 26 -8.428 -24.344 44.107 1.00 0.00 N ATOM 197 CA VAL 26 -8.742 -25.474 44.977 1.00 0.00 C ATOM 198 CB VAL 26 -7.631 -26.539 44.943 1.00 0.00 C ATOM 199 CG1 VAL 26 -7.892 -27.615 45.986 1.00 0.00 C ATOM 200 CG2 VAL 26 -7.521 -27.150 43.555 1.00 0.00 C ATOM 201 O VAL 26 -9.896 -25.456 47.079 1.00 0.00 O ATOM 202 C VAL 26 -8.969 -25.002 46.404 1.00 0.00 C ATOM 203 N LEU 27 -8.114 -24.091 46.862 1.00 0.00 N ATOM 204 CA LEU 27 -8.241 -23.553 48.205 1.00 0.00 C ATOM 205 CB LEU 27 -7.089 -22.590 48.506 1.00 0.00 C ATOM 206 CG LEU 27 -5.703 -23.217 48.660 1.00 0.00 C ATOM 207 CD1 LEU 27 -4.634 -22.141 48.753 1.00 0.00 C ATOM 208 CD2 LEU 27 -5.654 -24.119 49.885 1.00 0.00 C ATOM 209 O LEU 27 -10.318 -23.072 49.286 1.00 0.00 O ATOM 210 C LEU 27 -9.593 -22.865 48.315 1.00 0.00 C ATOM 211 N ALA 28 -9.935 -22.050 47.316 1.00 0.00 N ATOM 212 CA ALA 28 -11.214 -21.353 47.312 1.00 0.00 C ATOM 213 CB ALA 28 -11.321 -20.449 46.092 1.00 0.00 C ATOM 214 O ALA 28 -13.251 -22.304 48.157 1.00 0.00 O ATOM 215 C ALA 28 -12.335 -22.378 47.339 1.00 0.00 C ATOM 216 N THR 29 -12.246 -23.344 46.437 1.00 0.00 N ATOM 217 CA THR 29 -13.254 -24.384 46.320 1.00 0.00 C ATOM 218 CB THR 29 -12.936 -25.351 45.166 1.00 0.00 C ATOM 219 CG2 THR 29 -12.898 -24.603 43.841 1.00 0.00 C ATOM 220 OG1 THR 29 -11.657 -25.960 45.386 1.00 0.00 O ATOM 221 O THR 29 -14.525 -25.748 47.825 1.00 0.00 O ATOM 222 C THR 29 -13.443 -25.221 47.584 1.00 0.00 C ATOM 223 N GLU 30 -12.398 -25.349 48.392 1.00 0.00 N ATOM 224 CA GLU 30 -12.505 -26.137 49.615 1.00 0.00 C ATOM 225 CB GLU 30 -11.249 -26.985 49.819 1.00 0.00 C ATOM 226 CG GLU 30 -11.027 -28.035 48.743 1.00 0.00 C ATOM 227 CD GLU 30 -9.784 -28.867 48.987 1.00 0.00 C ATOM 228 OE1 GLU 30 -9.056 -28.577 49.959 1.00 0.00 O ATOM 229 OE2 GLU 30 -9.538 -29.810 48.207 1.00 0.00 O ATOM 230 O GLU 30 -12.688 -25.773 51.968 1.00 0.00 O ATOM 231 C GLU 30 -12.734 -25.276 50.846 1.00 0.00 C ATOM 232 N GLY 31 -12.974 -23.987 50.637 1.00 0.00 N ATOM 233 CA GLY 31 -13.197 -23.082 51.754 1.00 0.00 C ATOM 234 O GLY 31 -12.172 -22.667 53.880 1.00 0.00 O ATOM 235 C GLY 31 -12.012 -22.987 52.701 1.00 0.00 C ATOM 236 N ASN 32 -10.817 -23.261 52.187 1.00 0.00 N ATOM 237 CA ASN 32 -9.604 -23.212 52.994 1.00 0.00 C ATOM 238 CB ASN 32 -8.584 -24.235 52.492 1.00 0.00 C ATOM 239 CG ASN 32 -7.376 -24.349 53.402 1.00 0.00 C ATOM 240 ND2 ASN 32 -6.327 -25.001 52.913 1.00 0.00 N ATOM 241 OD1 ASN 32 -7.389 -23.855 54.529 1.00 0.00 O ATOM 242 O ASN 32 -8.083 -21.515 52.234 1.00 0.00 O ATOM 243 C ASN 32 -9.007 -21.806 52.993 1.00 0.00 C ATOM 244 N TRP 33 -9.528 -20.944 53.860 1.00 0.00 N ATOM 245 CA TRP 33 -9.074 -19.561 53.944 1.00 0.00 C ATOM 246 CB TRP 33 -9.915 -18.780 54.957 1.00 0.00 C ATOM 247 CG TRP 33 -9.734 -19.245 56.369 1.00 0.00 C ATOM 248 CD1 TRP 33 -10.486 -20.173 57.029 1.00 0.00 C ATOM 249 CD2 TRP 33 -8.737 -18.800 57.297 1.00 0.00 C ATOM 250 CE2 TRP 33 -8.946 -19.503 58.499 1.00 0.00 C ATOM 251 CE3 TRP 33 -7.689 -17.879 57.229 1.00 0.00 C ATOM 252 NE1 TRP 33 -10.022 -20.337 58.312 1.00 0.00 N ATOM 253 CZ2 TRP 33 -8.145 -19.313 59.624 1.00 0.00 C ATOM 254 CZ3 TRP 33 -6.897 -17.693 58.347 1.00 0.00 C ATOM 255 CH2 TRP 33 -7.126 -18.405 59.529 1.00 0.00 H ATOM 256 O TRP 33 -6.974 -18.396 53.905 1.00 0.00 O ATOM 257 C TRP 33 -7.601 -19.372 54.319 1.00 0.00 C ATOM 258 N ASP 34 -7.053 -20.285 55.110 1.00 0.00 N ATOM 259 CA ASP 34 -5.654 -20.179 55.511 1.00 0.00 C ATOM 260 CB ASP 34 -5.302 -21.273 56.522 1.00 0.00 C ATOM 261 CG ASP 34 -3.883 -21.149 57.042 1.00 0.00 C ATOM 262 OD1 ASP 34 -3.570 -20.122 57.680 1.00 0.00 O ATOM 263 OD2 ASP 34 -3.083 -22.082 56.810 1.00 0.00 O ATOM 264 O ASP 34 -3.864 -19.420 54.117 1.00 0.00 O ATOM 265 C ASP 34 -4.735 -20.267 54.303 1.00 0.00 C ATOM 266 N ALA 35 -4.924 -21.300 53.489 1.00 0.00 N ATOM 267 CA ALA 35 -4.114 -21.470 52.290 1.00 0.00 C ATOM 268 CB ALA 35 -4.468 -22.773 51.591 1.00 0.00 C ATOM 269 O ALA 35 -3.386 -19.790 50.726 1.00 0.00 O ATOM 270 C ALA 35 -4.324 -20.278 51.364 1.00 0.00 C ATOM 271 N LEU 36 -5.567 -19.812 51.296 1.00 0.00 N ATOM 272 CA LEU 36 -5.909 -18.679 50.453 1.00 0.00 C ATOM 273 CB LEU 36 -7.400 -18.359 50.568 1.00 0.00 C ATOM 274 CG LEU 36 -7.903 -17.168 49.748 1.00 0.00 C ATOM 275 CD1 LEU 36 -7.683 -17.406 48.263 1.00 0.00 C ATOM 276 CD2 LEU 36 -9.374 -16.904 50.030 1.00 0.00 C ATOM 277 O LEU 36 -4.387 -16.896 49.961 1.00 0.00 O ATOM 278 C LEU 36 -5.081 -17.450 50.815 1.00 0.00 C ATOM 279 N VAL 37 -5.150 -17.030 52.079 1.00 0.00 N ATOM 280 CA VAL 37 -4.411 -15.855 52.532 1.00 0.00 C ATOM 281 CB VAL 37 -4.663 -15.569 54.024 1.00 0.00 C ATOM 282 CG1 VAL 37 -3.736 -14.470 54.520 1.00 0.00 C ATOM 283 CG2 VAL 37 -6.118 -15.189 54.255 1.00 0.00 C ATOM 284 O VAL 37 -2.216 -15.056 51.975 1.00 0.00 O ATOM 285 C VAL 37 -2.920 -16.018 52.282 1.00 0.00 C ATOM 286 N ASP 38 -2.450 -17.247 52.421 1.00 0.00 N ATOM 287 CA ASP 38 -1.052 -17.574 52.207 1.00 0.00 C ATOM 288 CB ASP 38 -0.795 -19.051 52.510 1.00 0.00 C ATOM 289 CG ASP 38 -0.850 -19.360 53.993 1.00 0.00 C ATOM 290 OD1 ASP 38 -0.817 -18.408 54.801 1.00 0.00 O ATOM 291 OD2 ASP 38 -0.927 -20.555 54.347 1.00 0.00 O ATOM 292 O ASP 38 0.448 -16.831 50.474 1.00 0.00 O ATOM 293 C ASP 38 -0.680 -17.228 50.761 1.00 0.00 C ATOM 294 N LEU 39 -1.651 -17.353 49.859 1.00 0.00 N ATOM 295 CA LEU 39 -1.426 -17.084 48.444 1.00 0.00 C ATOM 296 CB LEU 39 -2.244 -18.044 47.580 1.00 0.00 C ATOM 297 CG LEU 39 -1.965 -19.536 47.773 1.00 0.00 C ATOM 298 CD1 LEU 39 -2.890 -20.373 46.901 1.00 0.00 C ATOM 299 CD2 LEU 39 -0.512 -19.857 47.463 1.00 0.00 C ATOM 300 O LEU 39 -1.502 -15.313 46.837 1.00 0.00 O ATOM 301 C LEU 39 -1.743 -15.668 47.994 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 300 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 33.82 84.7 72 66.7 108 ARMSMC SECONDARY STRUCTURE . . 35.29 84.4 64 65.3 98 ARMSMC SURFACE . . . . . . . . 36.68 83.3 60 65.2 92 ARMSMC BURIED . . . . . . . . 11.51 91.7 12 75.0 16 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.62 33.3 33 67.3 49 ARMSSC1 RELIABLE SIDE CHAINS . 82.65 35.5 31 67.4 46 ARMSSC1 SECONDARY STRUCTURE . . 87.11 33.3 30 68.2 44 ARMSSC1 SURFACE . . . . . . . . 92.28 25.9 27 64.3 42 ARMSSC1 BURIED . . . . . . . . 54.28 66.7 6 85.7 7 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.72 37.0 27 73.0 37 ARMSSC2 RELIABLE SIDE CHAINS . 85.71 37.5 16 69.6 23 ARMSSC2 SECONDARY STRUCTURE . . 85.11 37.5 24 72.7 33 ARMSSC2 SURFACE . . . . . . . . 88.11 33.3 21 67.7 31 ARMSSC2 BURIED . . . . . . . . 90.82 50.0 6 100.0 6 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.48 27.3 11 73.3 15 ARMSSC3 RELIABLE SIDE CHAINS . 60.12 28.6 7 63.6 11 ARMSSC3 SECONDARY STRUCTURE . . 71.23 30.0 10 71.4 14 ARMSSC3 SURFACE . . . . . . . . 79.07 22.2 9 69.2 13 ARMSSC3 BURIED . . . . . . . . 27.58 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 39.37 0.0 1 50.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 39.37 0.0 1 50.0 2 ARMSSC4 SECONDARY STRUCTURE . . 39.37 0.0 1 50.0 2 ARMSSC4 SURFACE . . . . . . . . 39.37 0.0 1 50.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.01 (Number of atoms: 37) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.01 37 67.3 55 CRMSCA CRN = ALL/NP . . . . . 0.0273 CRMSCA SECONDARY STRUCTURE . . 1.01 33 67.3 49 CRMSCA SURFACE . . . . . . . . 1.04 31 66.0 47 CRMSCA BURIED . . . . . . . . 0.81 6 75.0 8 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.12 184 67.2 274 CRMSMC SECONDARY STRUCTURE . . 1.13 165 67.3 245 CRMSMC SURFACE . . . . . . . . 1.17 154 65.8 234 CRMSMC BURIED . . . . . . . . 0.81 30 75.0 40 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.53 152 70.0 217 CRMSSC RELIABLE SIDE CHAINS . 3.50 114 66.7 171 CRMSSC SECONDARY STRUCTURE . . 2.91 133 69.3 192 CRMSSC SURFACE . . . . . . . . 3.73 127 67.6 188 CRMSSC BURIED . . . . . . . . 2.23 25 86.2 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.62 300 68.6 437 CRMSALL SECONDARY STRUCTURE . . 2.20 265 68.3 388 CRMSALL SURFACE . . . . . . . . 2.76 251 66.8 376 CRMSALL BURIED . . . . . . . . 1.68 49 80.3 61 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.866 1.000 0.500 37 67.3 55 ERRCA SECONDARY STRUCTURE . . 0.862 1.000 0.500 33 67.3 49 ERRCA SURFACE . . . . . . . . 0.888 1.000 0.500 31 66.0 47 ERRCA BURIED . . . . . . . . 0.755 1.000 0.500 6 75.0 8 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.918 1.000 0.500 184 67.2 274 ERRMC SECONDARY STRUCTURE . . 0.924 1.000 0.500 165 67.3 245 ERRMC SURFACE . . . . . . . . 0.954 1.000 0.500 154 65.8 234 ERRMC BURIED . . . . . . . . 0.729 1.000 0.500 30 75.0 40 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.715 1.000 0.500 152 70.0 217 ERRSC RELIABLE SIDE CHAINS . 2.576 1.000 0.500 114 66.7 171 ERRSC SECONDARY STRUCTURE . . 2.351 1.000 0.500 133 69.3 192 ERRSC SURFACE . . . . . . . . 2.902 1.000 0.500 127 67.6 188 ERRSC BURIED . . . . . . . . 1.762 1.000 0.500 25 86.2 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.801 1.000 0.500 300 68.6 437 ERRALL SECONDARY STRUCTURE . . 1.616 1.000 0.500 265 68.3 388 ERRALL SURFACE . . . . . . . . 1.910 1.000 0.500 251 66.8 376 ERRALL BURIED . . . . . . . . 1.242 1.000 0.500 49 80.3 61 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 26 36 37 37 37 37 55 DISTCA CA (P) 47.27 65.45 67.27 67.27 67.27 55 DISTCA CA (RMS) 0.64 0.93 1.01 1.01 1.01 DISTCA ALL (N) 141 209 245 284 297 300 437 DISTALL ALL (P) 32.27 47.83 56.06 64.99 67.96 437 DISTALL ALL (RMS) 0.61 0.96 1.29 1.91 2.36 DISTALL END of the results output