####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 51 ( 204), selected 51 , name T0602AL396_1-D1 # Molecule2: number of CA atoms 55 ( 437), selected 51 , name T0602-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0602AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 5 - 55 1.98 1.98 LCS_AVERAGE: 92.73 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 5 - 55 1.98 1.98 LCS_AVERAGE: 92.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 6 - 50 0.99 2.11 LCS_AVERAGE: 75.47 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 51 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 5 E 5 44 51 51 10 25 43 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT R 6 R 6 45 51 51 10 24 42 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT H 7 H 7 45 51 51 8 18 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT Q 8 Q 8 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT H 9 H 9 45 51 51 15 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 10 L 10 45 51 51 15 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 11 L 11 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT S 12 S 12 45 51 51 16 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT E 13 E 13 45 51 51 13 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT Y 14 Y 14 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT Q 15 Q 15 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT Q 16 Q 16 45 51 51 16 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT I 17 I 17 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 18 L 18 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT T 19 T 19 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 20 L 20 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT S 21 S 21 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT E 22 E 22 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT Q 23 Q 23 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT M 24 M 24 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 25 L 25 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT V 26 V 26 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 27 L 27 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT A 28 A 28 45 51 51 13 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT T 29 T 29 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT E 30 E 30 45 51 51 9 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT G 31 G 31 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT N 32 N 32 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT W 33 W 33 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT D 34 D 34 45 51 51 11 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT A 35 A 35 45 51 51 10 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 36 L 36 45 51 51 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT V 37 V 37 45 51 51 10 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT D 38 D 38 45 51 51 4 27 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 39 L 39 45 51 51 10 27 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT E 40 E 40 45 51 51 11 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT M 41 M 41 45 51 51 11 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT T 42 T 42 45 51 51 11 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT Y 43 Y 43 45 51 51 11 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT L 44 L 44 45 51 51 10 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT K 45 K 45 45 51 51 10 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT A 46 A 46 45 51 51 11 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT V 47 V 47 45 51 51 7 23 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT E 48 E 48 45 51 51 8 13 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT S 49 S 49 45 51 51 7 27 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT T 50 T 50 45 51 51 10 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT A 51 A 51 36 51 51 1 3 19 24 45 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT N 52 N 52 3 51 51 1 7 38 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT I 53 I 53 3 51 51 3 3 3 45 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT T 54 T 54 3 51 51 3 3 3 6 38 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 LCS_GDT I 55 I 55 3 51 51 3 3 3 3 3 4 4 6 7 7 8 15 29 40 51 51 51 51 51 51 LCS_AVERAGE LCS_A: 86.98 ( 75.47 92.73 92.73 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 18 29 44 46 48 49 50 50 50 50 50 50 50 50 51 51 51 51 51 51 GDT PERCENT_AT 32.73 52.73 80.00 83.64 87.27 89.09 90.91 90.91 90.91 90.91 90.91 90.91 90.91 90.91 92.73 92.73 92.73 92.73 92.73 92.73 GDT RMS_LOCAL 0.34 0.56 0.96 1.01 1.11 1.18 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.98 1.98 1.98 1.98 1.98 1.98 GDT RMS_ALL_AT 2.18 2.06 2.12 2.08 2.05 2.06 2.02 2.02 2.02 2.02 2.02 2.02 2.02 2.02 1.98 1.98 1.98 1.98 1.98 1.98 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 5 E 5 1.016 5 0.170 0.170 1.090 85.952 38.201 LGA R 6 R 6 1.569 7 0.180 0.180 1.569 77.143 28.052 LGA H 7 H 7 1.479 6 0.061 0.061 1.479 81.429 32.571 LGA Q 8 Q 8 1.055 5 0.012 0.012 1.178 85.952 38.201 LGA H 9 H 9 0.767 6 0.078 0.078 0.767 92.857 37.143 LGA L 10 L 10 0.609 4 0.017 0.017 0.836 90.476 45.238 LGA L 11 L 11 0.981 4 0.051 0.051 1.031 88.214 44.107 LGA S 12 S 12 1.330 2 0.082 0.082 1.330 81.429 54.286 LGA E 13 E 13 0.813 5 0.019 0.019 0.888 90.476 40.212 LGA Y 14 Y 14 0.324 8 0.036 0.036 0.816 95.238 31.746 LGA Q 15 Q 15 1.278 5 0.061 0.061 1.455 83.690 37.196 LGA Q 16 Q 16 1.335 5 0.048 0.048 1.335 81.429 36.190 LGA I 17 I 17 0.571 4 0.026 0.026 0.854 90.476 45.238 LGA L 18 L 18 0.898 4 0.027 0.027 1.021 88.214 44.107 LGA T 19 T 19 1.034 3 0.025 0.025 1.034 88.214 50.408 LGA L 20 L 20 0.694 4 0.024 0.024 0.723 90.476 45.238 LGA S 21 S 21 0.196 2 0.036 0.036 0.371 100.000 66.667 LGA E 22 E 22 0.805 5 0.051 0.051 0.805 90.476 40.212 LGA Q 23 Q 23 0.754 5 0.082 0.082 0.778 90.476 40.212 LGA M 24 M 24 0.268 4 0.028 0.028 0.397 100.000 50.000 LGA L 25 L 25 0.507 4 0.073 0.073 0.607 95.238 47.619 LGA V 26 V 26 0.557 3 0.039 0.039 0.557 92.857 53.061 LGA L 27 L 27 0.442 4 0.036 0.036 0.686 97.619 48.810 LGA A 28 A 28 0.562 1 0.039 0.039 0.960 92.857 74.286 LGA T 29 T 29 0.374 3 0.042 0.042 0.896 95.238 54.422 LGA E 30 E 30 1.030 5 0.164 0.164 1.030 90.595 40.265 LGA G 31 G 31 0.589 0 0.195 0.195 1.094 88.214 88.214 LGA N 32 N 32 0.819 4 0.022 0.022 0.819 90.476 45.238 LGA W 33 W 33 0.603 10 0.099 0.099 0.780 90.476 25.850 LGA D 34 D 34 0.356 4 0.172 0.172 1.003 92.976 46.488 LGA A 35 A 35 0.379 1 0.193 0.193 1.166 95.357 76.286 LGA L 36 L 36 0.137 4 0.043 0.043 0.712 97.619 48.810 LGA V 37 V 37 1.191 3 0.085 0.085 1.416 83.690 47.823 LGA D 38 D 38 1.534 4 0.031 0.031 1.827 75.000 37.500 LGA L 39 L 39 1.374 4 0.047 0.047 1.446 81.429 40.714 LGA E 40 E 40 1.087 5 0.095 0.095 1.087 85.952 38.201 LGA M 41 M 41 1.185 4 0.039 0.039 1.202 81.429 40.714 LGA T 42 T 42 1.296 3 0.035 0.035 1.301 81.429 46.531 LGA Y 43 Y 43 1.045 8 0.036 0.036 1.100 85.952 28.651 LGA L 44 L 44 1.182 4 0.021 0.021 1.325 81.429 40.714 LGA K 45 K 45 1.653 5 0.144 0.144 1.966 75.000 33.333 LGA A 46 A 46 1.388 1 0.069 0.069 1.388 81.429 65.143 LGA V 47 V 47 1.145 3 0.152 0.152 1.740 79.286 45.306 LGA E 48 E 48 1.767 5 0.038 0.038 1.767 75.000 33.333 LGA S 49 S 49 1.912 2 0.085 0.085 1.912 72.857 48.571 LGA T 50 T 50 1.271 3 0.025 0.025 1.429 85.952 49.116 LGA A 51 A 51 3.128 1 0.059 0.059 3.128 61.190 48.952 LGA N 52 N 52 2.246 4 0.638 0.638 2.851 69.048 34.524 LGA I 53 I 53 2.325 4 0.557 0.557 2.851 62.857 31.429 LGA T 54 T 54 4.386 3 0.606 0.606 6.443 30.357 17.347 LGA I 55 I 55 10.882 4 0.530 0.530 11.270 0.714 0.357 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 51 204 204 100.00 410 204 49.76 55 SUMMARY(RMSD_GDC): 1.975 1.932 1.932 77.130 40.415 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 51 55 4.0 50 1.33 80.000 86.794 3.489 LGA_LOCAL RMSD: 1.333 Number of atoms: 50 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.016 Number of assigned atoms: 51 Std_ASGN_ATOMS RMSD: 1.975 Standard rmsd on all 51 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.618808 * X + -0.768663 * Y + -0.161969 * Z + 46.635452 Y_new = 0.055636 * X + 0.162785 * Y + -0.985092 * Z + -14.818547 Z_new = 0.783570 * X + -0.618594 * Y + -0.057967 * Z + 70.806129 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.051926 -0.900391 -1.664232 [DEG: 174.8625 -51.5886 -95.3535 ] ZXZ: -0.162962 1.628796 2.239075 [DEG: -9.3370 93.3231 128.2896 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0602AL396_1-D1 REMARK 2: T0602-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0602AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 51 55 4.0 50 1.33 86.794 1.98 REMARK ---------------------------------------------------------- MOLECULE T0602AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3a7m_A ATOM 1 N GLU 5 16.084 -23.324 25.120 1.00 0.00 N ATOM 2 CA GLU 5 15.919 -23.319 26.609 1.00 0.00 C ATOM 3 C GLU 5 15.393 -21.970 27.134 1.00 0.00 C ATOM 4 O GLU 5 14.810 -21.912 28.218 1.00 0.00 O ATOM 5 N ARG 6 15.617 -20.895 26.376 1.00 0.00 N ATOM 6 CA ARG 6 15.142 -19.571 26.765 1.00 0.00 C ATOM 7 C ARG 6 13.710 -19.558 26.231 1.00 0.00 C ATOM 8 O ARG 6 12.907 -18.687 26.549 1.00 0.00 O ATOM 9 N HIS 7 13.401 -20.562 25.418 1.00 0.00 N ATOM 10 CA HIS 7 12.073 -20.724 24.854 1.00 0.00 C ATOM 11 C HIS 7 11.322 -21.726 25.724 1.00 0.00 C ATOM 12 O HIS 7 10.105 -21.642 25.884 1.00 0.00 O ATOM 13 N GLN 8 12.058 -22.681 26.285 1.00 0.00 N ATOM 14 CA GLN 8 11.461 -23.684 27.159 1.00 0.00 C ATOM 15 C GLN 8 11.083 -23.064 28.498 1.00 0.00 C ATOM 16 O GLN 8 9.963 -23.260 28.974 1.00 0.00 O ATOM 17 N HIS 9 12.004 -22.319 29.108 1.00 0.00 N ATOM 18 CA HIS 9 11.704 -21.675 30.379 1.00 0.00 C ATOM 19 C HIS 9 10.464 -20.792 30.187 1.00 0.00 C ATOM 20 O HIS 9 9.652 -20.655 31.096 1.00 0.00 O ATOM 21 N LEU 10 10.308 -20.208 29.001 1.00 0.00 N ATOM 22 CA LEU 10 9.135 -19.373 28.722 1.00 0.00 C ATOM 23 C LEU 10 7.835 -20.170 28.857 1.00 0.00 C ATOM 24 O LEU 10 6.865 -19.700 29.436 1.00 0.00 O ATOM 25 N LEU 11 7.809 -21.374 28.308 1.00 0.00 N ATOM 26 CA LEU 11 6.619 -22.193 28.397 1.00 0.00 C ATOM 27 C LEU 11 6.480 -22.672 29.827 1.00 0.00 C ATOM 28 O LEU 11 5.479 -22.420 30.476 1.00 0.00 O ATOM 29 N SER 12 7.515 -23.333 30.320 1.00 0.00 N ATOM 30 CA SER 12 7.521 -23.879 31.674 1.00 0.00 C ATOM 31 C SER 12 7.031 -22.927 32.763 1.00 0.00 C ATOM 32 O SER 12 6.456 -23.366 33.751 1.00 0.00 O ATOM 33 N GLU 13 7.261 -21.631 32.603 1.00 0.00 N ATOM 34 CA GLU 13 6.811 -20.685 33.623 1.00 0.00 C ATOM 35 C GLU 13 5.290 -20.603 33.653 1.00 0.00 C ATOM 36 O GLU 13 4.673 -20.785 34.704 1.00 0.00 O ATOM 37 N TYR 14 4.687 -20.344 32.498 1.00 0.00 N ATOM 38 CA TYR 14 3.237 -20.249 32.392 1.00 0.00 C ATOM 39 C TYR 14 2.556 -21.553 32.761 1.00 0.00 C ATOM 40 O TYR 14 1.421 -21.565 33.240 1.00 0.00 O ATOM 41 N GLN 15 3.254 -22.653 32.515 1.00 0.00 N ATOM 42 CA GLN 15 2.728 -23.946 32.875 1.00 0.00 C ATOM 43 C GLN 15 2.632 -23.842 34.385 1.00 0.00 C ATOM 44 O GLN 15 1.586 -24.123 34.965 1.00 0.00 O ATOM 45 N GLN 16 3.734 -23.422 35.014 1.00 0.00 N ATOM 46 CA GLN 16 3.796 -23.275 36.460 1.00 0.00 C ATOM 47 C GLN 16 2.763 -22.318 37.033 1.00 0.00 C ATOM 48 O GLN 16 2.229 -22.559 38.107 1.00 0.00 O ATOM 49 N ILE 17 2.493 -21.218 36.346 1.00 0.00 N ATOM 50 CA ILE 17 1.495 -20.278 36.847 1.00 0.00 C ATOM 51 C ILE 17 0.131 -20.935 36.773 1.00 0.00 C ATOM 52 O ILE 17 -0.615 -20.956 37.742 1.00 0.00 O ATOM 53 N LEU 18 -0.189 -21.466 35.604 1.00 0.00 N ATOM 54 CA LEU 18 -1.455 -22.128 35.400 1.00 0.00 C ATOM 55 C LEU 18 -1.606 -23.192 36.503 1.00 0.00 C ATOM 56 O LEU 18 -2.685 -23.350 37.070 1.00 0.00 O ATOM 57 N THR 19 -0.521 -23.885 36.843 1.00 0.00 N ATOM 58 CA THR 19 -0.597 -24.878 37.901 1.00 0.00 C ATOM 59 C THR 19 -0.911 -24.213 39.234 1.00 0.00 C ATOM 60 O THR 19 -1.911 -24.536 39.852 1.00 0.00 O ATOM 61 N LEU 20 -0.063 -23.301 39.696 1.00 0.00 N ATOM 62 CA LEU 20 -0.321 -22.635 40.972 1.00 0.00 C ATOM 63 C LEU 20 -1.738 -22.091 41.045 1.00 0.00 C ATOM 64 O LEU 20 -2.385 -22.190 42.076 1.00 0.00 O ATOM 65 N SER 21 -2.219 -21.532 39.942 1.00 0.00 N ATOM 66 CA SER 21 -3.560 -20.959 39.889 1.00 0.00 C ATOM 67 C SER 21 -4.668 -22.006 40.081 1.00 0.00 C ATOM 68 O SER 21 -5.627 -21.795 40.830 1.00 0.00 O ATOM 69 N GLU 22 -4.540 -23.133 39.397 1.00 0.00 N ATOM 70 CA GLU 22 -5.518 -24.184 39.563 1.00 0.00 C ATOM 71 C GLU 22 -5.501 -24.505 41.048 1.00 0.00 C ATOM 72 O GLU 22 -6.544 -24.717 41.667 1.00 0.00 O ATOM 73 N GLN 23 -4.303 -24.554 41.616 1.00 0.00 N ATOM 74 CA GLN 23 -4.139 -24.852 43.038 1.00 0.00 C ATOM 75 C GLN 23 -4.951 -23.942 43.922 1.00 0.00 C ATOM 76 O GLN 23 -5.773 -24.395 44.698 1.00 0.00 O ATOM 77 N MET 24 -4.704 -22.651 43.797 1.00 0.00 N ATOM 78 CA MET 24 -5.385 -21.679 44.609 1.00 0.00 C ATOM 79 C MET 24 -6.891 -21.738 44.459 1.00 0.00 C ATOM 80 O MET 24 -7.623 -21.593 45.438 1.00 0.00 O ATOM 81 N LEU 25 -7.363 -21.931 43.232 1.00 0.00 N ATOM 82 CA LEU 25 -8.801 -22.040 43.002 1.00 0.00 C ATOM 83 C LEU 25 -9.334 -23.186 43.841 1.00 0.00 C ATOM 84 O LEU 25 -10.188 -22.996 44.685 1.00 0.00 O ATOM 85 N VAL 26 -8.840 -24.389 43.583 1.00 0.00 N ATOM 86 CA VAL 26 -9.256 -25.570 44.339 1.00 0.00 C ATOM 87 C VAL 26 -9.301 -25.368 45.849 1.00 0.00 C ATOM 88 O VAL 26 -10.199 -25.873 46.517 1.00 0.00 O ATOM 89 N LEU 27 -8.307 -24.675 46.387 1.00 0.00 N ATOM 90 CA LEU 27 -8.259 -24.409 47.807 1.00 0.00 C ATOM 91 C LEU 27 -9.438 -23.592 48.256 1.00 0.00 C ATOM 92 O LEU 27 -9.952 -23.792 49.342 1.00 0.00 O ATOM 93 N ALA 28 -9.859 -22.654 47.417 1.00 0.00 N ATOM 94 CA ALA 28 -10.997 -21.802 47.738 1.00 0.00 C ATOM 95 C ALA 28 -12.263 -22.648 47.614 1.00 0.00 C ATOM 96 O ALA 28 -13.138 -22.567 48.479 1.00 0.00 O ATOM 97 N THR 29 -12.387 -23.458 46.570 1.00 0.00 N ATOM 98 CA THR 29 -13.589 -24.219 46.504 1.00 0.00 C ATOM 99 C THR 29 -13.754 -24.943 47.835 1.00 0.00 C ATOM 100 O THR 29 -14.856 -25.089 48.352 1.00 0.00 O ATOM 101 N GLU 30 -12.645 -25.409 48.392 1.00 0.00 N ATOM 102 CA GLU 30 -12.686 -26.108 49.680 1.00 0.00 C ATOM 103 C GLU 30 -12.943 -25.099 50.761 1.00 0.00 C ATOM 104 O GLU 30 -13.473 -25.435 51.797 1.00 0.00 O ATOM 105 N GLY 31 -12.573 -23.853 50.518 1.00 0.00 N ATOM 106 CA GLY 31 -12.765 -22.847 51.541 1.00 0.00 C ATOM 107 C GLY 31 -11.559 -22.736 52.452 1.00 0.00 C ATOM 108 O GLY 31 -11.626 -22.169 53.544 1.00 0.00 O ATOM 109 N ASN 32 -10.447 -23.308 52.017 1.00 0.00 N ATOM 110 CA ASN 32 -9.219 -23.237 52.796 1.00 0.00 C ATOM 111 C ASN 32 -8.576 -21.871 52.551 1.00 0.00 C ATOM 112 O ASN 32 -7.477 -21.795 52.022 1.00 0.00 O ATOM 113 N TRP 33 -9.262 -20.799 52.934 1.00 0.00 N ATOM 114 CA TRP 33 -8.754 -19.444 52.721 1.00 0.00 C ATOM 115 C TRP 33 -7.496 -19.102 53.500 1.00 0.00 C ATOM 116 O TRP 33 -6.719 -18.240 53.095 1.00 0.00 O ATOM 117 N ASP 34 -7.296 -19.749 54.635 1.00 0.00 N ATOM 118 CA ASP 34 -6.108 -19.465 55.418 1.00 0.00 C ATOM 119 C ASP 34 -4.855 -19.784 54.618 1.00 0.00 C ATOM 120 O ASP 34 -3.824 -19.118 54.759 1.00 0.00 O ATOM 121 N ALA 35 -4.925 -20.820 53.790 1.00 0.00 N ATOM 122 CA ALA 35 -3.777 -21.182 52.963 1.00 0.00 C ATOM 123 C ALA 35 -3.681 -20.241 51.777 1.00 0.00 C ATOM 124 O ALA 35 -2.589 -19.896 51.360 1.00 0.00 O ATOM 125 N LEU 36 -4.820 -19.794 51.258 1.00 0.00 N ATOM 126 CA LEU 36 -4.784 -18.875 50.139 1.00 0.00 C ATOM 127 C LEU 36 -4.019 -17.628 50.524 1.00 0.00 C ATOM 128 O LEU 36 -3.130 -17.199 49.801 1.00 0.00 O ATOM 129 N VAL 37 -4.374 -17.034 51.658 1.00 0.00 N ATOM 130 CA VAL 37 -3.692 -15.828 52.124 1.00 0.00 C ATOM 131 C VAL 37 -2.187 -16.091 52.143 1.00 0.00 C ATOM 132 O VAL 37 -1.390 -15.263 51.686 1.00 0.00 O ATOM 133 N ASP 38 -1.799 -17.252 52.658 1.00 0.00 N ATOM 134 CA ASP 38 -0.394 -17.619 52.710 1.00 0.00 C ATOM 135 C ASP 38 0.254 -17.658 51.331 1.00 0.00 C ATOM 136 O ASP 38 1.151 -16.864 51.038 1.00 0.00 O ATOM 137 N LEU 39 -0.195 -18.572 50.479 1.00 0.00 N ATOM 138 CA LEU 39 0.354 -18.705 49.130 1.00 0.00 C ATOM 139 C LEU 39 0.206 -17.472 48.227 1.00 0.00 C ATOM 140 O LEU 39 0.944 -17.319 47.245 1.00 0.00 O ATOM 141 N GLU 40 -0.752 -16.606 48.539 1.00 0.00 N ATOM 142 CA GLU 40 -0.983 -15.421 47.722 1.00 0.00 C ATOM 143 C GLU 40 0.262 -14.632 47.332 1.00 0.00 C ATOM 144 O GLU 40 0.603 -14.551 46.147 1.00 0.00 O ATOM 145 N MET 41 0.931 -14.025 48.310 1.00 0.00 N ATOM 146 CA MET 41 2.109 -13.224 47.986 1.00 0.00 C ATOM 147 C MET 41 3.039 -13.957 47.009 1.00 0.00 C ATOM 148 O MET 41 3.448 -13.394 45.988 1.00 0.00 O ATOM 149 N THR 42 3.350 -15.214 47.313 1.00 0.00 N ATOM 150 CA THR 42 4.216 -16.031 46.469 1.00 0.00 C ATOM 151 C THR 42 3.683 -16.183 45.030 1.00 0.00 C ATOM 152 O THR 42 4.444 -16.219 44.059 1.00 0.00 O ATOM 153 N TYR 43 2.364 -16.256 44.908 1.00 0.00 N ATOM 154 CA TYR 43 1.709 -16.405 43.613 1.00 0.00 C ATOM 155 C TYR 43 1.809 -15.116 42.795 1.00 0.00 C ATOM 156 O TYR 43 2.280 -15.112 41.664 1.00 0.00 O ATOM 157 N LEU 44 1.348 -14.022 43.387 1.00 0.00 N ATOM 158 CA LEU 44 1.389 -12.702 42.763 1.00 0.00 C ATOM 159 C LEU 44 2.840 -12.364 42.475 1.00 0.00 C ATOM 160 O LEU 44 3.164 -11.650 41.530 1.00 0.00 O ATOM 161 N LYS 45 3.702 -12.897 43.328 1.00 0.00 N ATOM 162 CA LYS 45 5.137 -12.710 43.232 1.00 0.00 C ATOM 163 C LYS 45 5.570 -13.336 41.907 1.00 0.00 C ATOM 164 O LYS 45 6.073 -12.650 41.023 1.00 0.00 O ATOM 165 N ALA 46 5.331 -14.635 41.760 1.00 0.00 N ATOM 166 CA ALA 46 5.705 -15.360 40.550 1.00 0.00 C ATOM 167 C ALA 46 5.029 -14.813 39.301 1.00 0.00 C ATOM 168 O ALA 46 5.694 -14.546 38.305 1.00 0.00 O ATOM 169 N VAL 47 3.711 -14.647 39.350 1.00 0.00 N ATOM 170 CA VAL 47 2.983 -14.165 38.190 1.00 0.00 C ATOM 171 C VAL 47 3.471 -12.797 37.719 1.00 0.00 C ATOM 172 O VAL 47 3.338 -12.449 36.551 1.00 0.00 O ATOM 173 N GLU 48 4.020 -12.008 38.625 1.00 0.00 N ATOM 174 CA GLU 48 4.523 -10.716 38.231 1.00 0.00 C ATOM 175 C GLU 48 5.902 -10.923 37.631 1.00 0.00 C ATOM 176 O GLU 48 6.211 -10.400 36.569 1.00 0.00 O ATOM 177 N SER 49 6.724 -11.695 38.331 1.00 0.00 N ATOM 178 CA SER 49 8.081 -12.003 37.911 1.00 0.00 C ATOM 179 C SER 49 8.090 -12.580 36.503 1.00 0.00 C ATOM 180 O SER 49 9.119 -12.561 35.835 1.00 0.00 O ATOM 181 N THR 50 6.941 -13.038 36.033 1.00 0.00 N ATOM 182 CA THR 50 6.868 -13.631 34.722 1.00 0.00 C ATOM 183 C THR 50 6.568 -12.638 33.630 1.00 0.00 C ATOM 184 O THR 50 6.997 -12.818 32.492 1.00 0.00 O ATOM 185 N ALA 51 7.355 -9.487 33.916 1.00 0.00 N ATOM 186 CA ALA 51 8.521 -8.626 33.905 1.00 0.00 C ATOM 187 C ALA 51 9.411 -9.270 32.820 1.00 0.00 C ATOM 188 O ALA 51 10.191 -8.597 32.156 1.00 0.00 O ATOM 189 N ASN 52 9.251 -10.589 32.678 1.00 0.00 N ATOM 190 CA ASN 52 9.992 -11.405 31.734 1.00 0.00 C ATOM 191 C ASN 52 9.904 -10.966 30.273 1.00 0.00 C ATOM 192 O ASN 52 8.937 -10.351 29.826 1.00 0.00 O ATOM 193 N ILE 53 10.967 -11.269 29.541 1.00 0.00 N ATOM 194 CA ILE 53 11.122 -10.922 28.126 1.00 0.00 C ATOM 195 C ILE 53 10.648 -12.049 27.215 1.00 0.00 C ATOM 196 O ILE 53 10.869 -13.221 27.524 1.00 0.00 O ATOM 197 N THR 54 10.016 -11.691 26.100 1.00 0.00 N ATOM 198 CA THR 54 9.553 -12.682 25.127 1.00 0.00 C ATOM 199 C THR 54 10.650 -13.031 24.098 1.00 0.00 C ATOM 200 O THR 54 11.201 -12.141 23.431 1.00 0.00 O ATOM 201 N ILE 55 10.989 -14.331 23.971 1.00 0.00 N ATOM 202 CA ILE 55 11.998 -14.951 23.094 1.00 0.00 C ATOM 203 C ILE 55 11.980 -14.597 21.626 1.00 0.00 C ATOM 204 O ILE 55 10.996 -14.070 21.139 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 204 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 35.24 83.0 100 92.6 108 ARMSMC SECONDARY STRUCTURE . . 36.08 84.6 91 92.9 98 ARMSMC SURFACE . . . . . . . . 37.59 82.1 84 91.3 92 ARMSMC BURIED . . . . . . . . 18.50 87.5 16 100.0 16 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.98 (Number of atoms: 51) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.98 51 92.7 55 CRMSCA CRN = ALL/NP . . . . . 0.0387 CRMSCA SECONDARY STRUCTURE . . 1.43 46 93.9 49 CRMSCA SURFACE . . . . . . . . 2.11 43 91.5 47 CRMSCA BURIED . . . . . . . . 0.92 8 100.0 8 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.94 204 74.5 274 CRMSMC SECONDARY STRUCTURE . . 1.42 184 75.1 245 CRMSMC SURFACE . . . . . . . . 2.07 172 73.5 234 CRMSMC BURIED . . . . . . . . 0.92 32 80.0 40 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 217 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 171 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 192 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 188 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.94 204 46.7 437 CRMSALL SECONDARY STRUCTURE . . 1.42 184 47.4 388 CRMSALL SURFACE . . . . . . . . 2.07 172 45.7 376 CRMSALL BURIED . . . . . . . . 0.92 32 52.5 61 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.347 1.000 0.500 51 92.7 55 ERRCA SECONDARY STRUCTURE . . 1.198 1.000 0.500 46 93.9 49 ERRCA SURFACE . . . . . . . . 1.465 1.000 0.500 43 91.5 47 ERRCA BURIED . . . . . . . . 0.718 1.000 0.500 8 100.0 8 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.325 1.000 0.500 204 74.5 274 ERRMC SECONDARY STRUCTURE . . 1.189 1.000 0.500 184 75.1 245 ERRMC SURFACE . . . . . . . . 1.429 1.000 0.500 172 73.5 234 ERRMC BURIED . . . . . . . . 0.769 1.000 0.500 32 80.0 40 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 217 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 171 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 192 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 188 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.325 1.000 0.500 204 46.7 437 ERRALL SECONDARY STRUCTURE . . 1.189 1.000 0.500 184 47.4 388 ERRALL SURFACE . . . . . . . . 1.429 1.000 0.500 172 45.7 376 ERRALL BURIED . . . . . . . . 0.769 1.000 0.500 32 52.5 61 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 22 46 48 50 50 51 55 DISTCA CA (P) 40.00 83.64 87.27 90.91 90.91 55 DISTCA CA (RMS) 0.59 1.14 1.22 1.39 1.39 DISTCA ALL (N) 97 184 196 198 201 204 437 DISTALL ALL (P) 22.20 42.11 44.85 45.31 46.00 437 DISTALL ALL (RMS) 0.66 1.12 1.23 1.28 1.49 DISTALL END of the results output