####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 48 ( 192), selected 48 , name T0602AL285_1-D1 # Molecule2: number of CA atoms 55 ( 437), selected 48 , name T0602-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0602AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 48 8 - 55 1.36 1.36 LCS_AVERAGE: 87.27 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 48 8 - 55 1.36 1.36 LCS_AVERAGE: 87.27 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 9 - 53 1.00 1.39 LCS_AVERAGE: 79.81 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 48 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Q 8 Q 8 40 48 48 3 6 21 40 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT H 9 H 9 45 48 48 3 32 39 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 10 L 10 45 48 48 9 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 11 L 11 45 48 48 13 32 39 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT S 12 S 12 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 13 E 13 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT Y 14 Y 14 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT Q 15 Q 15 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT Q 16 Q 16 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT I 17 I 17 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 18 L 18 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT T 19 T 19 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 20 L 20 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT S 21 S 21 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 22 E 22 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT Q 23 Q 23 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT M 24 M 24 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 25 L 25 45 48 48 16 31 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 26 V 26 45 48 48 13 28 39 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 27 L 27 45 48 48 16 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 28 A 28 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT T 29 T 29 45 48 48 13 28 39 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 30 E 30 45 48 48 13 27 39 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT G 31 G 31 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT N 32 N 32 45 48 48 13 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT W 33 W 33 45 48 48 13 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT D 34 D 34 45 48 48 4 20 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 35 A 35 45 48 48 12 31 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 36 L 36 45 48 48 6 12 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 37 V 37 45 48 48 6 12 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT D 38 D 38 45 48 48 6 29 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 39 L 39 45 48 48 12 31 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 40 E 40 45 48 48 16 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT M 41 M 41 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT T 42 T 42 45 48 48 18 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT Y 43 Y 43 45 48 48 13 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 44 L 44 45 48 48 12 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT K 45 K 45 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 46 A 46 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 47 V 47 45 48 48 12 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 48 E 48 45 48 48 12 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT S 49 S 49 45 48 48 15 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT T 50 T 50 45 48 48 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 51 A 51 45 48 48 12 31 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT N 52 N 52 45 48 48 4 29 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT I 53 I 53 45 48 48 10 31 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT T 54 T 54 39 48 48 3 4 37 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT I 55 I 55 3 48 48 0 3 3 3 5 8 47 48 48 48 48 48 48 48 48 48 48 48 48 48 LCS_AVERAGE LCS_A: 84.79 ( 79.81 87.27 87.27 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 19 32 40 46 47 47 47 48 48 48 48 48 48 48 48 48 48 48 48 48 GDT PERCENT_AT 34.55 58.18 72.73 83.64 85.45 85.45 85.45 87.27 87.27 87.27 87.27 87.27 87.27 87.27 87.27 87.27 87.27 87.27 87.27 87.27 GDT RMS_LOCAL 0.37 0.63 0.87 1.03 1.10 1.10 1.10 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 GDT RMS_ALL_AT 1.51 1.45 1.46 1.39 1.39 1.39 1.39 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Q 8 Q 8 2.844 5 0.580 0.580 2.844 64.881 28.836 LGA H 9 H 9 0.937 6 0.138 0.138 1.592 88.452 35.381 LGA L 10 L 10 1.238 4 0.098 0.098 1.271 83.690 41.845 LGA L 11 L 11 1.519 4 0.089 0.089 1.519 81.548 40.774 LGA S 12 S 12 0.811 2 0.023 0.023 1.138 92.976 61.984 LGA E 13 E 13 0.578 5 0.075 0.075 0.598 90.476 40.212 LGA Y 14 Y 14 0.715 8 0.018 0.018 0.715 90.476 30.159 LGA Q 15 Q 15 0.756 5 0.027 0.027 0.785 90.476 40.212 LGA Q 16 Q 16 0.566 5 0.056 0.056 0.566 97.619 43.386 LGA I 17 I 17 0.471 4 0.049 0.049 0.571 97.619 48.810 LGA L 18 L 18 0.325 4 0.030 0.030 0.430 100.000 50.000 LGA T 19 T 19 0.299 3 0.049 0.049 0.299 100.000 57.143 LGA L 20 L 20 0.249 4 0.050 0.050 0.525 97.619 48.810 LGA S 21 S 21 0.345 2 0.036 0.036 0.345 100.000 66.667 LGA E 22 E 22 0.215 5 0.022 0.022 0.364 100.000 44.444 LGA Q 23 Q 23 0.228 5 0.010 0.010 0.228 100.000 44.444 LGA M 24 M 24 0.161 4 0.020 0.020 0.333 100.000 50.000 LGA L 25 L 25 0.772 4 0.031 0.031 1.182 90.595 45.298 LGA V 26 V 26 1.362 3 0.072 0.072 1.362 83.690 47.823 LGA L 27 L 27 0.629 4 0.037 0.037 0.921 95.238 47.619 LGA A 28 A 28 0.610 1 0.036 0.036 1.071 90.595 72.476 LGA T 29 T 29 1.472 3 0.030 0.030 1.779 79.405 45.374 LGA E 30 E 30 1.580 5 0.048 0.048 1.580 79.286 35.238 LGA G 31 G 31 0.293 0 0.115 0.115 1.019 92.976 92.976 LGA N 32 N 32 0.485 4 0.148 0.148 1.182 92.976 46.488 LGA W 33 W 33 0.728 10 0.201 0.201 1.610 86.190 24.626 LGA D 34 D 34 1.682 4 0.183 0.183 1.682 81.548 40.774 LGA A 35 A 35 1.191 1 0.264 0.264 1.356 81.429 65.143 LGA L 36 L 36 1.737 4 0.050 0.050 1.737 75.000 37.500 LGA V 37 V 37 1.684 3 0.038 0.038 1.802 77.143 44.082 LGA D 38 D 38 1.369 4 0.103 0.103 1.430 83.690 41.845 LGA L 39 L 39 0.887 4 0.028 0.028 1.127 90.595 45.298 LGA E 40 E 40 0.387 5 0.127 0.127 0.780 95.238 42.328 LGA M 41 M 41 1.022 4 0.042 0.042 1.022 88.214 44.107 LGA T 42 T 42 0.523 3 0.069 0.069 0.642 92.857 53.061 LGA Y 43 Y 43 0.776 8 0.028 0.028 0.858 92.857 30.952 LGA L 44 L 44 1.263 4 0.019 0.019 1.447 83.690 41.845 LGA K 45 K 45 0.979 5 0.035 0.035 0.996 90.476 40.212 LGA A 46 A 46 0.434 1 0.016 0.016 0.646 92.857 74.286 LGA V 47 V 47 1.189 3 0.054 0.054 1.396 83.690 47.823 LGA E 48 E 48 1.428 5 0.031 0.031 1.470 81.429 36.190 LGA S 49 S 49 0.875 2 0.037 0.037 1.017 88.214 58.810 LGA T 50 T 50 0.877 3 0.051 0.051 1.250 85.952 49.116 LGA A 51 A 51 1.989 1 0.055 0.055 2.088 70.833 56.667 LGA N 52 N 52 1.888 4 0.106 0.106 1.888 75.000 37.500 LGA I 53 I 53 1.353 4 0.173 0.173 1.637 77.143 38.571 LGA T 54 T 54 1.900 3 0.608 0.608 3.253 69.286 39.592 LGA I 55 I 55 5.336 4 0.489 0.489 5.944 32.738 16.369 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 48 192 192 100.00 380 192 50.53 55 SUMMARY(RMSD_GDC): 1.359 1.294 1.294 75.576 40.238 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 48 55 4.0 48 1.36 79.091 83.301 3.290 LGA_LOCAL RMSD: 1.359 Number of atoms: 48 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.359 Number of assigned atoms: 48 Std_ASGN_ATOMS RMSD: 1.359 Standard rmsd on all 48 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.256685 * X + -0.966427 * Y + -0.011502 * Z + 55.229137 Y_new = -0.400256 * X + 0.117126 * Y + -0.908888 * Z + 28.355438 Z_new = 0.879721 * X + -0.228694 * Y + -0.416882 * Z + 39.972340 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.141033 -1.075274 -2.639839 [DEG: -122.6722 -61.6087 -151.2516 ] ZXZ: -0.012654 2.000809 1.825129 [DEG: -0.7250 114.6379 104.5722 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0602AL285_1-D1 REMARK 2: T0602-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0602AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 48 55 4.0 48 1.36 83.301 1.36 REMARK ---------------------------------------------------------- MOLECULE T0602AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3h3mA ATOM 1 N GLN 8 10.935 -23.554 25.422 1.00 0.00 N ATOM 2 CA GLN 8 11.464 -22.222 25.888 1.00 0.00 C ATOM 3 C GLN 8 11.136 -22.010 27.401 1.00 0.00 C ATOM 4 O GLN 8 10.239 -22.713 27.971 1.00 0.00 O ATOM 5 N HIS 9 11.863 -21.071 28.062 1.00 0.00 N ATOM 6 CA HIS 9 11.776 -20.929 29.527 1.00 0.00 C ATOM 7 C HIS 9 10.588 -20.117 30.059 1.00 0.00 C ATOM 8 O HIS 9 10.152 -20.359 31.191 1.00 0.00 O ATOM 9 N LEU 10 10.075 -19.167 29.275 1.00 0.00 N ATOM 10 CA LEU 10 8.916 -18.364 29.707 1.00 0.00 C ATOM 11 C LEU 10 7.641 -19.191 29.736 1.00 0.00 C ATOM 12 O LEU 10 6.722 -18.904 30.509 1.00 0.00 O ATOM 13 N LEU 11 7.595 -20.221 28.897 1.00 0.00 N ATOM 14 CA LEU 11 6.539 -21.204 28.977 1.00 0.00 C ATOM 15 C LEU 11 6.571 -21.872 30.375 1.00 0.00 C ATOM 16 O LEU 11 5.524 -22.255 30.895 1.00 0.00 O ATOM 17 N SER 12 7.753 -21.974 31.000 1.00 0.00 N ATOM 18 CA SER 12 7.884 -22.660 32.303 1.00 0.00 C ATOM 19 C SER 12 7.124 -21.902 33.365 1.00 0.00 C ATOM 20 O SER 12 6.478 -22.520 34.213 1.00 0.00 O ATOM 21 N GLU 13 7.194 -20.568 33.309 1.00 0.00 N ATOM 22 CA GLU 13 6.513 -19.714 34.298 1.00 0.00 C ATOM 23 C GLU 13 4.988 -19.684 34.115 1.00 0.00 C ATOM 24 O GLU 13 4.261 -19.668 35.099 1.00 0.00 O ATOM 25 N TYR 14 4.500 -19.680 32.885 1.00 0.00 N ATOM 26 CA TYR 14 3.077 -19.764 32.694 1.00 0.00 C ATOM 27 C TYR 14 2.538 -21.073 33.272 1.00 0.00 C ATOM 28 O TYR 14 1.459 -21.120 33.849 1.00 0.00 O ATOM 29 N GLN 15 3.296 -22.144 33.093 1.00 0.00 N ATOM 30 CA GLN 15 2.890 -23.446 33.612 1.00 0.00 C ATOM 31 C GLN 15 2.783 -23.366 35.133 1.00 0.00 C ATOM 32 O GLN 15 1.777 -23.744 35.700 1.00 0.00 O ATOM 33 N GLN 16 3.812 -22.827 35.773 1.00 0.00 N ATOM 34 CA GLN 16 3.843 -22.700 37.226 1.00 0.00 C ATOM 35 C GLN 16 2.715 -21.883 37.775 1.00 0.00 C ATOM 36 O GLN 16 2.244 -22.181 38.870 1.00 0.00 O ATOM 37 N ILE 17 2.325 -20.825 37.058 1.00 0.00 N ATOM 38 CA ILE 17 1.188 -19.969 37.463 1.00 0.00 C ATOM 39 C ILE 17 -0.147 -20.692 37.292 1.00 0.00 C ATOM 40 O ILE 17 -1.047 -20.570 38.144 1.00 0.00 O ATOM 41 N LEU 18 -0.275 -21.433 36.202 1.00 0.00 N ATOM 42 CA LEU 18 -1.391 -22.310 36.029 1.00 0.00 C ATOM 43 C LEU 18 -1.422 -23.330 37.173 1.00 0.00 C ATOM 44 O LEU 18 -2.465 -23.583 37.760 1.00 0.00 O ATOM 45 N THR 19 -0.281 -23.893 37.550 1.00 0.00 N ATOM 46 CA THR 19 -0.329 -24.930 38.596 1.00 0.00 C ATOM 47 C THR 19 -0.744 -24.306 39.914 1.00 0.00 C ATOM 48 O THR 19 -1.608 -24.841 40.633 1.00 0.00 O ATOM 49 N LEU 20 -0.163 -23.145 40.188 1.00 0.00 N ATOM 50 CA LEU 20 -0.453 -22.414 41.393 1.00 0.00 C ATOM 51 C LEU 20 -1.915 -21.995 41.468 1.00 0.00 C ATOM 52 O LEU 20 -2.538 -22.158 42.490 1.00 0.00 O ATOM 53 N SER 21 -2.460 -21.491 40.362 1.00 0.00 N ATOM 54 CA SER 21 -3.868 -21.063 40.320 1.00 0.00 C ATOM 55 C SER 21 -4.820 -22.248 40.489 1.00 0.00 C ATOM 56 O SER 21 -5.914 -22.079 41.024 1.00 0.00 O ATOM 57 N GLU 22 -4.377 -23.444 40.077 1.00 0.00 N ATOM 58 CA GLU 22 -5.141 -24.672 40.299 1.00 0.00 C ATOM 59 C GLU 22 -5.128 -25.065 41.797 1.00 0.00 C ATOM 60 O GLU 22 -6.144 -25.512 42.355 1.00 0.00 O ATOM 61 N GLN 23 -3.984 -24.900 42.453 1.00 0.00 N ATOM 62 CA GLN 23 -3.929 -25.045 43.914 1.00 0.00 C ATOM 63 C GLN 23 -4.839 -24.015 44.574 1.00 0.00 C ATOM 64 O GLN 23 -5.565 -24.337 45.526 1.00 0.00 O ATOM 65 N MET 24 -4.868 -22.783 44.068 1.00 0.00 N ATOM 66 CA MET 24 -5.736 -21.789 44.717 1.00 0.00 C ATOM 67 C MET 24 -7.170 -22.232 44.612 1.00 0.00 C ATOM 68 O MET 24 -7.930 -22.121 45.575 1.00 0.00 O ATOM 69 N LEU 25 -7.527 -22.707 43.429 1.00 0.00 N ATOM 70 CA LEU 25 -8.885 -23.262 43.187 1.00 0.00 C ATOM 71 C LEU 25 -9.256 -24.396 44.151 1.00 0.00 C ATOM 72 O LEU 25 -10.352 -24.385 44.665 1.00 0.00 O ATOM 73 N VAL 26 -8.349 -25.347 44.381 1.00 0.00 N ATOM 74 CA VAL 26 -8.583 -26.410 45.356 1.00 0.00 C ATOM 75 C VAL 26 -8.843 -25.883 46.793 1.00 0.00 C ATOM 76 O VAL 26 -9.766 -26.329 47.445 1.00 0.00 O ATOM 77 N LEU 27 -8.027 -24.965 47.286 1.00 0.00 N ATOM 78 CA LEU 27 -8.303 -24.279 48.545 1.00 0.00 C ATOM 79 C LEU 27 -9.660 -23.555 48.587 1.00 0.00 C ATOM 80 O LEU 27 -10.395 -23.638 49.562 1.00 0.00 O ATOM 81 N ALA 28 -9.944 -22.762 47.580 1.00 0.00 N ATOM 82 CA ALA 28 -11.244 -22.085 47.468 1.00 0.00 C ATOM 83 C ALA 28 -12.411 -23.091 47.517 1.00 0.00 C ATOM 84 O ALA 28 -13.418 -22.891 48.189 1.00 0.00 O ATOM 85 N THR 29 -12.269 -24.164 46.774 1.00 0.00 N ATOM 86 CA THR 29 -13.180 -25.269 46.841 1.00 0.00 C ATOM 87 C THR 29 -13.463 -25.764 48.295 1.00 0.00 C ATOM 88 O THR 29 -14.584 -26.174 48.594 1.00 0.00 O ATOM 89 N GLU 30 -12.444 -25.719 49.156 1.00 0.00 N ATOM 90 CA GLU 30 -12.511 -26.252 50.512 1.00 0.00 C ATOM 91 C GLU 30 -12.778 -25.103 51.455 1.00 0.00 C ATOM 92 O GLU 30 -12.647 -25.278 52.650 1.00 0.00 O ATOM 93 N GLY 31 -13.082 -23.935 50.913 1.00 0.00 N ATOM 94 CA GLY 31 -13.301 -22.724 51.710 1.00 0.00 C ATOM 95 C GLY 31 -12.122 -22.328 52.593 1.00 0.00 C ATOM 96 O GLY 31 -12.298 -21.792 53.674 1.00 0.00 O ATOM 97 N ASN 32 -10.916 -22.559 52.112 1.00 0.00 N ATOM 98 CA ASN 32 -9.741 -22.269 52.918 1.00 0.00 C ATOM 99 C ASN 32 -9.215 -20.982 52.352 1.00 0.00 C ATOM 100 O ASN 32 -8.325 -20.934 51.500 1.00 0.00 O ATOM 101 N TRP 33 -9.843 -19.928 52.810 1.00 0.00 N ATOM 102 CA TRP 33 -9.569 -18.602 52.297 1.00 0.00 C ATOM 103 C TRP 33 -8.146 -18.202 52.599 1.00 0.00 C ATOM 104 O TRP 33 -7.483 -17.677 51.738 1.00 0.00 O ATOM 105 N ASP 34 -7.651 -18.584 53.757 1.00 0.00 N ATOM 106 CA ASP 34 -6.303 -18.197 54.212 1.00 0.00 C ATOM 107 C ASP 34 -5.181 -18.900 53.445 1.00 0.00 C ATOM 108 O ASP 34 -4.112 -18.317 53.239 1.00 0.00 O ATOM 109 N ALA 35 -5.446 -20.110 52.995 1.00 0.00 N ATOM 110 CA ALA 35 -4.551 -20.808 52.118 1.00 0.00 C ATOM 111 C ALA 35 -4.555 -20.132 50.768 1.00 0.00 C ATOM 112 O ALA 35 -3.481 -19.822 50.201 1.00 0.00 O ATOM 113 N LEU 36 -5.742 -19.827 50.255 1.00 0.00 N ATOM 114 CA LEU 36 -5.824 -19.169 48.945 1.00 0.00 C ATOM 115 C LEU 36 -4.940 -17.934 48.982 1.00 0.00 C ATOM 116 O LEU 36 -4.130 -17.729 48.071 1.00 0.00 O ATOM 117 N VAL 37 -5.085 -17.124 50.044 1.00 0.00 N ATOM 118 CA VAL 37 -4.264 -15.921 50.224 1.00 0.00 C ATOM 119 C VAL 37 -2.781 -16.245 50.351 1.00 0.00 C ATOM 120 O VAL 37 -1.940 -15.522 49.866 1.00 0.00 O ATOM 121 N ASP 38 -2.468 -17.326 51.065 1.00 0.00 N ATOM 122 CA ASP 38 -1.083 -17.686 51.225 1.00 0.00 C ATOM 123 C ASP 38 -0.451 -18.053 49.880 1.00 0.00 C ATOM 124 O ASP 38 0.693 -17.717 49.632 1.00 0.00 O ATOM 125 N LEU 39 -1.228 -18.709 49.008 1.00 0.00 N ATOM 126 CA LEU 39 -0.780 -19.025 47.623 1.00 0.00 C ATOM 127 C LEU 39 -0.507 -17.763 46.792 1.00 0.00 C ATOM 128 O LEU 39 0.305 -17.776 45.881 1.00 0.00 O ATOM 129 N GLU 40 -1.204 -16.676 47.095 1.00 0.00 N ATOM 130 CA GLU 40 -0.946 -15.398 46.453 1.00 0.00 C ATOM 131 C GLU 40 0.469 -14.885 46.635 1.00 0.00 C ATOM 132 O GLU 40 0.945 -14.051 45.847 1.00 0.00 O ATOM 133 N MET 41 1.170 -15.352 47.667 1.00 0.00 N ATOM 134 CA MET 41 2.549 -14.871 47.865 1.00 0.00 C ATOM 135 C MET 41 3.471 -15.377 46.761 1.00 0.00 C ATOM 136 O MET 41 4.207 -14.610 46.127 1.00 0.00 O ATOM 137 N THR 42 3.385 -16.672 46.502 1.00 0.00 N ATOM 138 CA THR 42 4.095 -17.286 45.390 1.00 0.00 C ATOM 139 C THR 42 3.652 -16.642 44.084 1.00 0.00 C ATOM 140 O THR 42 4.475 -16.338 43.229 1.00 0.00 O ATOM 141 N TYR 43 2.348 -16.407 43.956 1.00 0.00 N ATOM 142 CA TYR 43 1.732 -15.872 42.736 1.00 0.00 C ATOM 143 C TYR 43 2.401 -14.599 42.282 1.00 0.00 C ATOM 144 O TYR 43 2.659 -14.433 41.119 1.00 0.00 O ATOM 145 N LEU 44 2.704 -13.718 43.223 1.00 0.00 N ATOM 146 CA LEU 44 3.288 -12.405 42.922 1.00 0.00 C ATOM 147 C LEU 44 4.759 -12.524 42.541 1.00 0.00 C ATOM 148 O LEU 44 5.276 -11.766 41.707 1.00 0.00 O ATOM 149 N LYS 45 5.416 -13.501 43.151 1.00 0.00 N ATOM 150 CA LYS 45 6.786 -13.875 42.787 1.00 0.00 C ATOM 151 C LYS 45 6.879 -14.292 41.331 1.00 0.00 C ATOM 152 O LYS 45 7.786 -13.900 40.615 1.00 0.00 O ATOM 153 N ALA 46 5.915 -15.129 40.952 1.00 0.00 N ATOM 154 CA ALA 46 5.846 -15.792 39.662 1.00 0.00 C ATOM 155 C ALA 46 5.530 -14.764 38.568 1.00 0.00 C ATOM 156 O ALA 46 6.062 -14.835 37.470 1.00 0.00 O ATOM 157 N VAL 47 4.693 -13.791 38.897 1.00 0.00 N ATOM 158 CA VAL 47 4.341 -12.717 37.980 1.00 0.00 C ATOM 159 C VAL 47 5.529 -11.784 37.780 1.00 0.00 C ATOM 160 O VAL 47 5.803 -11.406 36.664 1.00 0.00 O ATOM 161 N GLU 48 6.261 -11.475 38.845 1.00 0.00 N ATOM 162 CA GLU 48 7.484 -10.689 38.728 1.00 0.00 C ATOM 163 C GLU 48 8.463 -11.391 37.776 1.00 0.00 C ATOM 164 O GLU 48 9.012 -10.751 36.845 1.00 0.00 O ATOM 165 N SER 49 8.654 -12.700 37.978 1.00 0.00 N ATOM 166 CA SER 49 9.648 -13.445 37.190 1.00 0.00 C ATOM 167 C SER 49 9.220 -13.480 35.743 1.00 0.00 C ATOM 168 O SER 49 10.029 -13.334 34.847 1.00 0.00 O ATOM 169 N THR 50 7.926 -13.666 35.539 1.00 0.00 N ATOM 170 CA THR 50 7.314 -13.563 34.232 1.00 0.00 C ATOM 171 C THR 50 7.640 -12.228 33.613 1.00 0.00 C ATOM 172 O THR 50 7.917 -12.135 32.426 1.00 0.00 O ATOM 173 N ALA 51 7.569 -11.190 34.428 1.00 0.00 N ATOM 174 CA ALA 51 7.741 -9.847 33.939 1.00 0.00 C ATOM 175 C ALA 51 9.183 -9.528 33.464 1.00 0.00 C ATOM 176 O ALA 51 9.393 -8.683 32.586 1.00 0.00 O ATOM 177 N ASN 52 10.154 -10.264 33.996 1.00 0.00 N ATOM 178 CA ASN 52 11.565 -10.136 33.601 1.00 0.00 C ATOM 179 C ASN 52 11.858 -10.793 32.228 1.00 0.00 C ATOM 180 O ASN 52 12.580 -10.220 31.425 1.00 0.00 O ATOM 181 N ILE 53 11.270 -11.960 31.955 1.00 0.00 N ATOM 182 CA ILE 53 11.380 -12.648 30.641 1.00 0.00 C ATOM 183 C ILE 53 10.536 -12.010 29.497 1.00 0.00 C ATOM 184 O ILE 53 10.883 -12.110 28.306 1.00 0.00 O ATOM 185 N THR 54 9.428 -11.376 29.854 1.00 0.00 N ATOM 186 CA THR 54 8.457 -10.961 28.862 1.00 0.00 C ATOM 187 C THR 54 8.385 -9.439 28.731 1.00 0.00 C ATOM 188 O THR 54 8.582 -8.721 29.720 1.00 0.00 O ATOM 189 N ILE 55 8.063 -8.942 27.511 1.00 0.00 N ATOM 190 CA ILE 55 7.794 -9.783 26.320 1.00 0.00 C ATOM 191 C ILE 55 9.008 -10.180 25.455 1.00 0.00 C ATOM 192 O ILE 55 10.202 -9.889 25.791 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 192 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 27.26 92.6 94 87.0 108 ARMSMC SECONDARY STRUCTURE . . 28.10 92.9 85 86.7 98 ARMSMC SURFACE . . . . . . . . 29.34 92.3 78 84.8 92 ARMSMC BURIED . . . . . . . . 12.98 93.8 16 100.0 16 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 23 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.36 (Number of atoms: 48) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.36 48 87.3 55 CRMSCA CRN = ALL/NP . . . . . 0.0283 CRMSCA SECONDARY STRUCTURE . . 1.15 43 87.8 49 CRMSCA SURFACE . . . . . . . . 1.45 40 85.1 47 CRMSCA BURIED . . . . . . . . 0.79 8 100.0 8 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.29 192 70.1 274 CRMSMC SECONDARY STRUCTURE . . 1.09 172 70.2 245 CRMSMC SURFACE . . . . . . . . 1.37 160 68.4 234 CRMSMC BURIED . . . . . . . . 0.82 32 80.0 40 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 217 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 171 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 192 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 188 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.29 192 43.9 437 CRMSALL SECONDARY STRUCTURE . . 1.09 172 44.3 388 CRMSALL SURFACE . . . . . . . . 1.37 160 42.6 376 CRMSALL BURIED . . . . . . . . 0.82 32 52.5 61 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.062 1.000 0.500 48 87.3 55 ERRCA SECONDARY STRUCTURE . . 0.989 1.000 0.500 43 87.8 49 ERRCA SURFACE . . . . . . . . 1.146 1.000 0.500 40 85.1 47 ERRCA BURIED . . . . . . . . 0.642 1.000 0.500 8 100.0 8 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.016 1.000 0.500 192 70.1 274 ERRMC SECONDARY STRUCTURE . . 0.938 1.000 0.500 172 70.2 245 ERRMC SURFACE . . . . . . . . 1.082 1.000 0.500 160 68.4 234 ERRMC BURIED . . . . . . . . 0.684 1.000 0.500 32 80.0 40 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 217 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 171 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 192 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 188 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.016 1.000 0.500 192 43.9 437 ERRALL SECONDARY STRUCTURE . . 0.938 1.000 0.500 172 44.3 388 ERRALL SURFACE . . . . . . . . 1.082 1.000 0.500 160 42.6 376 ERRALL BURIED . . . . . . . . 0.684 1.000 0.500 32 52.5 61 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 28 46 47 47 48 48 55 DISTCA CA (P) 50.91 83.64 85.45 85.45 87.27 55 DISTCA CA (RMS) 0.62 1.06 1.13 1.13 1.36 DISTCA ALL (N) 111 183 188 189 192 192 437 DISTALL ALL (P) 25.40 41.88 43.02 43.25 43.94 437 DISTALL ALL (RMS) 0.60 1.01 1.08 1.10 1.29 DISTALL END of the results output