####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 47 ( 231), selected 47 , name T0600TS444_1-D2 # Molecule2: number of CA atoms 47 ( 389), selected 47 , name T0600-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600TS444_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 101 - 121 4.93 18.30 LONGEST_CONTINUOUS_SEGMENT: 21 102 - 122 4.92 18.38 LCS_AVERAGE: 41.42 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 78 - 90 1.84 19.16 LCS_AVERAGE: 19.60 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 105 - 115 0.91 23.77 LCS_AVERAGE: 13.58 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 47 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 76 G 76 3 4 19 3 3 3 3 4 4 4 8 8 13 14 18 20 20 23 24 24 25 25 27 LCS_GDT D 77 D 77 4 12 19 3 3 6 8 10 14 16 17 17 17 17 18 20 20 23 24 24 25 25 27 LCS_GDT R 78 R 78 4 13 19 3 3 4 11 12 15 16 17 17 17 17 18 20 20 23 24 24 25 25 27 LCS_GDT P 79 P 79 5 13 19 3 4 5 8 10 15 16 17 17 17 17 18 20 20 23 24 24 25 25 27 LCS_GDT F 80 F 80 6 13 19 3 5 10 11 12 15 16 17 17 17 17 18 20 20 23 24 24 25 25 27 LCS_GDT D 81 D 81 6 13 19 3 5 10 11 12 15 16 17 17 17 17 18 20 21 23 24 24 25 25 27 LCS_GDT V 82 V 82 8 13 19 3 6 10 11 12 15 16 17 17 17 19 20 21 22 23 24 24 25 27 27 LCS_GDT E 83 E 83 8 13 19 3 6 10 11 12 15 16 17 17 17 19 20 21 22 23 24 24 25 27 27 LCS_GDT Y 84 Y 84 8 13 19 3 6 10 11 12 15 16 17 17 17 19 20 21 21 23 24 25 25 27 27 LCS_GDT R 85 R 85 8 13 19 3 6 10 11 12 15 16 17 17 17 17 18 20 21 22 24 25 26 27 27 LCS_GDT I 86 I 86 8 13 19 3 6 10 11 12 15 16 17 17 17 17 18 20 20 23 24 25 26 26 27 LCS_GDT V 87 V 87 8 13 19 3 6 10 11 12 15 16 17 17 17 17 18 20 20 23 24 24 26 26 27 LCS_GDT R 88 R 88 8 13 19 3 6 10 11 12 15 16 17 17 17 17 18 20 20 23 24 24 25 25 27 LCS_GDT P 89 P 89 8 13 19 3 6 9 11 12 15 16 17 17 17 17 18 20 20 23 24 24 25 25 27 LCS_GDT D 90 D 90 5 13 19 3 3 5 8 12 15 16 17 17 17 17 18 20 20 23 24 24 25 25 27 LCS_GDT G 91 G 91 3 5 19 3 3 3 5 5 6 7 10 10 13 17 18 20 20 23 24 24 25 25 27 LCS_GDT Q 92 Q 92 4 5 19 3 4 4 5 5 6 7 10 10 11 15 17 20 20 23 24 24 25 25 27 LCS_GDT V 93 V 93 4 5 19 3 4 4 5 5 6 7 10 10 11 12 16 19 20 23 24 24 25 25 27 LCS_GDT R 94 R 94 4 5 19 3 4 4 5 5 6 7 10 10 11 11 14 15 18 23 24 24 25 25 27 LCS_GDT E 95 E 95 4 5 17 3 4 4 5 5 6 7 10 10 11 11 14 17 18 23 24 24 25 25 27 LCS_GDT L 96 L 96 3 3 11 3 3 3 3 4 5 6 7 7 9 11 13 17 20 23 24 24 26 26 27 LCS_GDT L 97 L 97 3 3 16 3 3 3 3 4 5 6 8 8 10 12 13 15 15 18 20 22 26 26 27 LCS_GDT E 98 E 98 3 3 16 3 3 3 3 4 5 6 8 8 10 12 13 15 16 18 22 24 26 26 27 LCS_GDT R 99 R 99 3 3 16 1 3 3 3 3 4 6 7 8 10 12 13 15 18 21 24 25 26 27 27 LCS_GDT N 100 N 100 3 3 16 3 3 4 4 4 7 7 9 10 12 12 13 15 17 19 22 25 26 26 27 LCS_GDT H 101 H 101 3 4 21 3 3 4 4 4 7 9 11 12 12 12 15 18 21 22 24 25 26 27 27 LCS_GDT I 102 I 102 3 4 21 3 3 4 4 6 8 10 11 13 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT Q 103 Q 103 3 4 21 0 3 3 3 6 8 10 11 12 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT R 104 R 104 3 4 21 0 3 4 4 6 8 10 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT Q 105 Q 105 11 12 21 4 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT A 106 A 106 11 12 21 4 8 11 11 11 12 12 13 13 15 17 18 20 22 23 23 24 25 27 27 LCS_GDT S 107 S 107 11 12 21 4 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT G 108 G 108 11 12 21 4 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT Q 109 Q 109 11 12 21 4 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT V 110 V 110 11 12 21 4 7 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT D 111 D 111 11 12 21 5 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT H 112 H 112 11 12 21 5 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT L 113 L 113 11 12 21 5 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT W 114 W 114 11 12 21 5 8 11 11 11 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT G 115 G 115 11 12 21 5 6 11 11 12 15 16 17 17 17 17 20 21 22 23 24 25 26 27 27 LCS_GDT T 116 T 116 6 12 21 3 5 7 8 10 15 16 17 17 17 17 20 21 22 23 24 25 26 27 27 LCS_GDT V 117 V 117 6 9 21 3 5 7 8 10 12 14 17 17 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT I 118 I 118 6 9 21 3 5 7 8 10 12 12 13 14 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT D 119 D 119 6 9 21 3 5 7 8 10 12 12 13 13 17 19 20 21 22 23 24 25 26 27 27 LCS_GDT M 120 M 120 6 9 21 3 4 7 7 10 12 12 13 14 17 19 20 21 22 23 24 25 25 27 27 LCS_GDT T 121 T 121 3 8 21 3 3 4 5 8 12 12 13 14 17 19 20 21 22 23 24 25 25 27 27 LCS_GDT E 122 E 122 3 4 21 3 3 3 3 4 4 5 8 11 14 14 16 16 17 19 21 24 25 27 27 LCS_AVERAGE LCS_A: 24.87 ( 13.58 19.60 41.42 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 8 11 11 12 15 16 17 17 17 19 20 21 22 23 24 25 26 27 27 GDT PERCENT_AT 10.64 17.02 23.40 23.40 25.53 31.91 34.04 36.17 36.17 36.17 40.43 42.55 44.68 46.81 48.94 51.06 53.19 55.32 57.45 57.45 GDT RMS_LOCAL 0.30 0.60 0.91 0.91 1.33 1.97 2.13 2.39 2.39 2.39 3.84 4.06 4.24 4.47 4.63 5.22 5.89 6.97 5.74 5.74 GDT RMS_ALL_AT 23.62 23.46 23.77 23.77 18.49 19.14 19.34 19.70 19.70 19.70 18.04 18.27 18.13 18.53 18.36 17.53 16.84 15.54 17.79 17.79 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 76 G 76 8.805 0 0.594 0.594 9.969 10.476 10.476 LGA D 77 D 77 3.224 3 0.601 0.542 5.182 55.595 33.214 LGA R 78 R 78 2.866 6 0.232 0.244 5.696 65.000 25.584 LGA P 79 P 79 2.632 2 0.191 0.259 5.306 54.048 34.626 LGA F 80 F 80 1.353 6 0.028 0.032 2.853 85.952 36.450 LGA D 81 D 81 2.319 3 0.055 0.079 3.528 59.405 35.952 LGA V 82 V 82 1.650 2 0.163 0.213 2.024 83.810 57.143 LGA E 83 E 83 0.394 4 0.153 0.194 0.684 95.238 52.381 LGA Y 84 Y 84 2.020 7 0.050 0.078 2.333 75.119 30.437 LGA R 85 R 85 2.494 6 0.139 0.176 3.553 68.810 28.961 LGA I 86 I 86 1.232 3 0.105 0.162 1.679 79.286 49.821 LGA V 87 V 87 0.985 2 0.064 0.075 1.147 90.476 63.333 LGA R 88 R 88 0.805 6 0.117 0.149 2.576 79.881 34.935 LGA P 89 P 89 2.238 2 0.631 0.602 4.626 58.690 41.701 LGA D 90 D 90 2.719 3 0.605 0.592 4.420 51.071 33.631 LGA G 91 G 91 9.168 0 0.081 0.081 12.825 3.690 3.690 LGA Q 92 Q 92 11.108 4 0.469 0.485 11.443 0.357 0.159 LGA V 93 V 93 12.430 2 0.071 0.069 14.269 0.000 0.000 LGA R 94 R 94 14.658 6 0.559 0.573 14.858 0.000 0.000 LGA E 95 E 95 14.714 4 0.622 0.572 15.604 0.000 0.000 LGA L 96 L 96 12.540 3 0.671 0.614 15.627 0.000 0.000 LGA L 97 L 97 18.196 3 0.640 0.573 20.168 0.000 0.000 LGA E 98 E 98 16.952 4 0.607 0.574 19.548 0.000 0.000 LGA R 99 R 99 18.875 6 0.612 0.570 20.861 0.000 0.000 LGA N 100 N 100 25.199 3 0.623 0.561 28.041 0.000 0.000 LGA H 101 H 101 26.445 5 0.497 0.542 26.754 0.000 0.000 LGA I 102 I 102 26.789 3 0.637 0.571 28.381 0.000 0.000 LGA Q 103 Q 103 31.125 4 0.595 0.552 33.412 0.000 0.000 LGA R 104 R 104 35.960 6 0.654 0.591 36.607 0.000 0.000 LGA Q 105 Q 105 36.278 4 0.700 0.656 38.365 0.000 0.000 LGA A 106 A 106 42.651 0 0.135 0.141 45.035 0.000 0.000 LGA S 107 S 107 44.775 1 0.209 0.207 45.487 0.000 0.000 LGA G 108 G 108 38.674 0 0.086 0.086 40.566 0.000 0.000 LGA Q 109 Q 109 36.868 4 0.060 0.090 38.819 0.000 0.000 LGA V 110 V 110 29.787 2 0.049 0.053 32.363 0.000 0.000 LGA D 111 D 111 28.309 3 0.111 0.114 28.550 0.000 0.000 LGA H 112 H 112 21.174 5 0.078 0.131 23.654 0.000 0.000 LGA L 113 L 113 16.059 3 0.085 0.086 17.904 0.000 0.000 LGA W 114 W 114 8.672 9 0.006 0.021 11.383 5.833 1.871 LGA G 115 G 115 2.392 0 0.107 0.107 4.264 57.976 57.976 LGA T 116 T 116 2.896 2 0.271 0.315 4.328 61.071 40.204 LGA V 117 V 117 4.613 2 0.052 0.103 6.310 28.929 22.721 LGA I 118 I 118 9.421 3 0.192 0.249 11.230 2.143 1.071 LGA D 119 D 119 13.492 3 0.062 0.060 16.529 0.000 0.000 LGA M 120 M 120 18.180 3 0.294 0.312 19.628 0.000 0.000 LGA T 121 T 121 19.500 2 0.083 0.097 20.090 0.000 0.000 LGA E 122 E 122 19.325 4 0.550 0.513 19.348 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 47 188 188 100.00 389 231 59.38 47 SUMMARY(RMSD_GDC): 11.121 11.104 11.132 24.954 14.816 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 47 47 4.0 17 2.39 31.915 29.546 0.684 LGA_LOCAL RMSD: 2.387 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.696 Number of assigned atoms: 47 Std_ASGN_ATOMS RMSD: 11.121 Standard rmsd on all 47 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.006760 * X + 0.999860 * Y + -0.015291 * Z + -17.653204 Y_new = -0.774238 * X + 0.014911 * Y + 0.632719 * Z + 59.348923 Z_new = 0.632859 * X + 0.007562 * Y + 0.774230 * Z + 14.632925 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.562065 -0.685240 0.009767 [DEG: -89.4997 -39.2613 0.5596 ] ZXZ: -3.117430 0.685298 1.558848 [DEG: -178.6156 39.2647 89.3154 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600TS444_1-D2 REMARK 2: T0600-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600TS444_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 47 47 4.0 17 2.39 29.546 11.12 REMARK ---------------------------------------------------------- MOLECULE T0600TS444_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0600 REMARK MODEL 1 REMARK PARENT N/A ATOM 372 N GLY 76 -0.355 61.387 22.508 1.00 1.00 N ATOM 373 CA GLY 76 0.763 62.053 23.148 1.00 1.00 C ATOM 374 C GLY 76 1.890 61.060 23.397 1.00 1.00 C ATOM 375 O GLY 76 3.060 61.433 23.385 1.00 1.00 O ATOM 376 N ASP 77 1.532 59.795 23.623 1.00 1.00 N ATOM 377 CA ASP 77 2.511 58.755 23.873 1.00 1.00 C ATOM 378 C ASP 77 2.590 57.813 22.681 1.00 1.00 C ATOM 379 O ASP 77 3.609 57.160 22.472 1.00 1.00 O ATOM 380 CB ASP 77 2.106 57.966 25.114 1.00 1.00 C ATOM 381 N ARG 78 1.510 57.745 21.899 1.00 1.00 N ATOM 382 CA ARG 78 1.460 56.886 20.734 1.00 1.00 C ATOM 383 C ARG 78 1.285 57.723 19.476 1.00 1.00 C ATOM 384 O ARG 78 0.490 58.662 19.459 1.00 1.00 O ATOM 385 CB ARG 78 0.288 55.919 20.867 1.00 1.00 C ATOM 386 N PRO 79 2.028 57.382 18.422 1.00 1.00 N ATOM 387 CA PRO 79 1.953 58.100 17.166 1.00 1.00 C ATOM 388 C PRO 79 0.520 58.109 16.653 1.00 1.00 C ATOM 389 O PRO 79 -0.088 57.054 16.486 1.00 1.00 O ATOM 390 CB PRO 79 2.852 57.420 16.139 1.00 1.00 C ATOM 391 N PHE 80 -0.018 59.305 16.406 1.00 1.00 N ATOM 392 CA PHE 80 -1.374 59.448 15.914 1.00 1.00 C ATOM 393 C PHE 80 -1.461 58.973 14.471 1.00 1.00 C ATOM 394 O PHE 80 -0.448 58.893 13.780 1.00 1.00 O ATOM 395 CB PHE 80 -1.789 60.915 15.990 1.00 1.00 C ATOM 396 N ASP 81 -2.676 58.660 14.017 1.00 1.00 N ATOM 397 CA ASP 81 -2.891 58.196 12.661 1.00 1.00 C ATOM 398 C ASP 81 -2.902 59.374 11.700 1.00 1.00 C ATOM 399 O ASP 81 -3.611 60.353 11.924 1.00 1.00 O ATOM 400 CB ASP 81 -4.229 57.465 12.582 1.00 1.00 C ATOM 401 N VAL 82 -2.113 59.279 10.627 1.00 1.00 N ATOM 402 CA VAL 82 -2.034 60.334 9.638 1.00 1.00 C ATOM 403 C VAL 82 -2.428 59.798 8.268 1.00 1.00 C ATOM 404 O VAL 82 -2.639 58.598 8.107 1.00 1.00 O ATOM 405 CB VAL 82 -0.606 60.868 9.580 1.00 1.00 C ATOM 406 N GLU 83 -2.527 60.691 7.282 1.00 1.00 N ATOM 407 CA GLU 83 -2.894 60.307 5.934 1.00 1.00 C ATOM 408 C GLU 83 -1.648 60.191 5.066 1.00 1.00 C ATOM 409 O GLU 83 -1.056 61.200 4.691 1.00 1.00 O ATOM 410 CB GLU 83 -3.826 61.361 5.343 1.00 1.00 C ATOM 411 N TYR 84 -1.252 58.956 4.752 1.00 1.00 N ATOM 412 CA TYR 84 -0.082 58.713 3.932 1.00 1.00 C ATOM 413 C TYR 84 -0.492 58.531 2.476 1.00 1.00 C ATOM 414 O TYR 84 -1.571 58.015 2.195 1.00 1.00 O ATOM 415 CB TYR 84 0.622 57.452 4.420 1.00 1.00 C ATOM 416 N ARG 85 0.375 58.957 1.555 1.00 1.00 N ATOM 417 CA ARG 85 0.101 58.841 0.137 1.00 1.00 C ATOM 418 C ARG 85 0.496 57.457 -0.360 1.00 1.00 C ATOM 419 O ARG 85 1.675 57.112 -0.368 1.00 1.00 O ATOM 420 CB ARG 85 0.901 59.897 -0.621 1.00 1.00 C ATOM 421 N ILE 86 -0.496 56.667 -0.774 1.00 1.00 N ATOM 422 CA ILE 86 -0.252 55.326 -1.269 1.00 1.00 C ATOM 423 C ILE 86 -0.986 55.113 -2.585 1.00 1.00 C ATOM 424 O ILE 86 -2.109 55.581 -2.754 1.00 1.00 O ATOM 425 CB ILE 86 -0.747 54.311 -0.244 1.00 1.00 C ATOM 426 N VAL 87 -0.347 54.401 -3.516 1.00 1.00 N ATOM 427 CA VAL 87 -0.939 54.128 -4.811 1.00 1.00 C ATOM 428 C VAL 87 -0.873 52.638 -5.111 1.00 1.00 C ATOM 429 O VAL 87 0.200 52.042 -5.071 1.00 1.00 O ATOM 430 CB VAL 87 -0.174 54.893 -5.886 1.00 1.00 C ATOM 431 N ARG 88 -2.027 52.038 -5.412 1.00 1.00 N ATOM 432 CA ARG 88 -2.098 50.621 -5.716 1.00 1.00 C ATOM 433 C ARG 88 -2.734 50.412 -7.083 1.00 1.00 C ATOM 434 O ARG 88 -3.733 51.049 -7.408 1.00 1.00 O ATOM 435 CB ARG 88 -2.937 49.918 -4.656 1.00 1.00 C ATOM 436 N PRO 89 -2.151 49.516 -7.883 1.00 1.00 N ATOM 437 CA PRO 89 -2.660 49.226 -9.208 1.00 1.00 C ATOM 438 C PRO 89 -3.902 48.351 -9.111 1.00 1.00 C ATOM 439 O PRO 89 -4.293 47.948 -8.018 1.00 1.00 O ATOM 440 CB PRO 89 -1.589 48.497 -10.014 1.00 1.00 C ATOM 441 N ASP 90 -4.521 48.060 -10.257 1.00 1.00 N ATOM 442 CA ASP 90 -5.711 47.238 -10.297 1.00 1.00 C ATOM 443 C ASP 90 -5.654 46.292 -11.489 1.00 1.00 C ATOM 444 O ASP 90 -4.949 46.555 -12.459 1.00 1.00 O ATOM 445 CB ASP 90 -6.941 48.133 -10.421 1.00 1.00 C ATOM 446 N GLY 91 -6.401 45.186 -11.410 1.00 1.00 N ATOM 447 CA GLY 91 -6.433 44.207 -12.476 1.00 1.00 C ATOM 448 C GLY 91 -5.356 43.154 -12.252 1.00 1.00 C ATOM 449 O GLY 91 -5.443 42.052 -12.789 1.00 1.00 O ATOM 450 N GLN 92 -4.341 43.498 -11.457 1.00 1.00 N ATOM 451 CA GLN 92 -3.253 42.585 -11.165 1.00 1.00 C ATOM 452 C GLN 92 -2.637 42.919 -9.813 1.00 1.00 C ATOM 453 O GLN 92 -1.421 42.844 -9.649 1.00 1.00 O ATOM 454 CB GLN 92 -2.188 42.705 -12.250 1.00 1.00 C ATOM 455 N VAL 93 -3.480 43.287 -8.848 1.00 1.00 N ATOM 456 CA VAL 93 -3.018 43.631 -7.517 1.00 1.00 C ATOM 457 C VAL 93 -3.625 42.682 -6.493 1.00 1.00 C ATOM 458 O VAL 93 -4.821 42.403 -6.536 1.00 1.00 O ATOM 459 CB VAL 93 -3.437 45.060 -7.191 1.00 1.00 C ATOM 460 N ARG 94 -2.795 42.188 -5.571 1.00 1.00 N ATOM 461 CA ARG 94 -3.251 41.275 -4.542 1.00 1.00 C ATOM 462 C ARG 94 -3.776 42.056 -3.345 1.00 1.00 C ATOM 463 O ARG 94 -4.920 41.867 -2.935 1.00 1.00 O ATOM 464 CB ARG 94 -2.089 40.393 -4.099 1.00 1.00 C ATOM 465 N GLU 95 -2.938 42.933 -2.789 1.00 1.00 N ATOM 466 CA GLU 95 -3.320 43.737 -1.645 1.00 1.00 C ATOM 467 C GLU 95 -4.456 44.678 -2.023 1.00 1.00 C ATOM 468 O GLU 95 -5.311 44.984 -1.195 1.00 1.00 O ATOM 469 CB GLU 95 -2.121 44.554 -1.179 1.00 1.00 C ATOM 470 N LEU 96 -4.460 45.136 -3.277 1.00 1.00 N ATOM 471 CA LEU 96 -5.486 46.038 -3.760 1.00 1.00 C ATOM 472 C LEU 96 -6.777 45.273 -4.016 1.00 1.00 C ATOM 473 O LEU 96 -7.788 45.864 -4.386 1.00 1.00 O ATOM 474 CB LEU 96 -5.018 46.688 -5.057 1.00 1.00 C ATOM 475 N LEU 97 -6.739 43.953 -3.816 1.00 1.00 N ATOM 476 CA LEU 97 -7.901 43.114 -4.024 1.00 1.00 C ATOM 477 C LEU 97 -8.670 42.951 -2.721 1.00 1.00 C ATOM 478 O LEU 97 -9.831 42.548 -2.730 1.00 1.00 O ATOM 479 CB LEU 97 -7.452 41.743 -4.521 1.00 1.00 C ATOM 480 N GLU 98 -8.020 43.268 -1.599 1.00 1.00 N ATOM 481 CA GLU 98 -8.643 43.157 -0.296 1.00 1.00 C ATOM 482 C GLU 98 -9.916 43.990 -0.251 1.00 1.00 C ATOM 483 O GLU 98 -10.919 43.563 0.316 1.00 1.00 O ATOM 484 CB GLU 98 -7.674 43.658 0.771 1.00 1.00 C ATOM 485 N ARG 99 -9.873 45.180 -0.854 1.00 1.00 N ATOM 486 CA ARG 99 -11.019 46.067 -0.881 1.00 1.00 C ATOM 487 C ARG 99 -12.254 45.309 -1.345 1.00 1.00 C ATOM 488 O ARG 99 -13.351 45.539 -0.841 1.00 1.00 O ATOM 489 CB ARG 99 -10.744 47.220 -1.839 1.00 1.00 C ATOM 490 N ASN 100 -12.073 44.403 -2.311 1.00 1.00 N ATOM 491 CA ASN 100 -13.170 43.618 -2.839 1.00 1.00 C ATOM 492 C ASN 100 -13.680 42.652 -1.778 1.00 1.00 C ATOM 493 O ASN 100 -14.817 42.193 -1.850 1.00 1.00 O ATOM 494 CB ASN 100 -12.688 42.827 -4.050 1.00 1.00 C ATOM 495 N HIS 101 -12.833 42.347 -0.791 1.00 1.00 N ATOM 496 CA HIS 101 -13.200 41.439 0.278 1.00 1.00 C ATOM 497 C HIS 101 -13.797 42.217 1.441 1.00 1.00 C ATOM 498 O HIS 101 -15.002 42.151 1.681 1.00 1.00 O ATOM 499 CB HIS 101 -11.958 40.691 0.755 1.00 1.00 C ATOM 500 N ILE 102 -12.952 42.954 2.165 1.00 1.00 N ATOM 501 CA ILE 102 -13.398 43.740 3.298 1.00 1.00 C ATOM 502 C ILE 102 -14.631 44.551 2.921 1.00 1.00 C ATOM 503 O ILE 102 -15.357 45.018 3.793 1.00 1.00 O ATOM 504 CB ILE 102 -12.282 44.686 3.729 1.00 1.00 C ATOM 505 N GLN 103 -14.859 44.715 1.616 1.00 1.00 N ATOM 506 CA GLN 103 -15.999 45.466 1.128 1.00 1.00 C ATOM 507 C GLN 103 -17.226 45.164 1.975 1.00 1.00 C ATOM 508 O GLN 103 -18.032 46.052 2.241 1.00 1.00 O ATOM 509 CB GLN 103 -16.276 45.080 -0.321 1.00 1.00 C ATOM 510 N ARG 104 -17.366 43.906 2.397 1.00 1.00 N ATOM 511 CA ARG 104 -18.491 43.490 3.210 1.00 1.00 C ATOM 512 C ARG 104 -18.763 44.524 4.294 1.00 1.00 C ATOM 513 O ARG 104 -19.836 44.529 4.895 1.00 1.00 O ATOM 514 CB ARG 104 -18.178 42.146 3.860 1.00 1.00 C ATOM 515 N GLN 105 -17.786 45.399 4.542 1.00 1.00 N ATOM 516 CA GLN 105 -17.921 46.433 5.549 1.00 1.00 C ATOM 517 C GLN 105 -18.904 47.496 5.080 1.00 1.00 C ATOM 518 O GLN 105 -19.221 48.423 5.822 1.00 1.00 O ATOM 519 CB GLN 105 -16.562 47.075 5.800 1.00 1.00 C ATOM 520 N ALA 106 -19.386 47.359 3.842 1.00 1.00 N ATOM 521 CA ALA 106 -20.328 48.305 3.278 1.00 1.00 C ATOM 522 C ALA 106 -21.441 48.592 4.275 1.00 1.00 C ATOM 523 O ALA 106 -22.069 49.647 4.219 1.00 1.00 O ATOM 524 CB ALA 106 -20.930 47.720 2.004 1.00 1.00 C ATOM 525 N SER 107 -21.683 47.651 5.192 1.00 1.00 N ATOM 526 CA SER 107 -22.715 47.804 6.195 1.00 1.00 C ATOM 527 C SER 107 -22.154 48.518 7.417 1.00 1.00 C ATOM 528 O SER 107 -22.781 48.524 8.475 1.00 1.00 O ATOM 529 CB SER 107 -23.229 46.429 6.607 1.00 1.00 C ATOM 530 N GLY 108 -20.971 49.119 7.268 1.00 1.00 N ATOM 531 CA GLY 108 -20.332 49.831 8.357 1.00 1.00 C ATOM 532 C GLY 108 -19.693 48.844 9.323 1.00 1.00 C ATOM 533 O GLY 108 -19.175 49.240 10.365 1.00 1.00 O ATOM 534 N GLN 109 -19.732 47.555 8.975 1.00 1.00 N ATOM 535 CA GLN 109 -19.160 46.520 9.810 1.00 1.00 C ATOM 536 C GLN 109 -17.723 46.243 9.391 1.00 1.00 C ATOM 537 O GLN 109 -17.462 45.940 8.229 1.00 1.00 O ATOM 538 CB GLN 109 -19.983 45.243 9.667 1.00 1.00 C ATOM 539 N VAL 110 -16.793 46.347 10.342 1.00 1.00 N ATOM 540 CA VAL 110 -15.390 46.108 10.070 1.00 1.00 C ATOM 541 C VAL 110 -15.112 44.612 10.028 1.00 1.00 C ATOM 542 O VAL 110 -15.691 43.850 10.798 1.00 1.00 O ATOM 543 CB VAL 110 -14.545 46.749 11.166 1.00 1.00 C ATOM 544 N ASP 111 -14.223 44.195 9.124 1.00 1.00 N ATOM 545 CA ASP 111 -13.872 42.796 8.985 1.00 1.00 C ATOM 546 C ASP 111 -12.641 42.480 9.822 1.00 1.00 C ATOM 547 O ASP 111 -12.506 41.370 10.336 1.00 1.00 O ATOM 548 CB ASP 111 -13.577 42.491 7.520 1.00 1.00 C ATOM 549 N HIS 112 -11.744 43.458 9.961 1.00 1.00 N ATOM 550 CA HIS 112 -10.531 43.282 10.735 1.00 1.00 C ATOM 551 C HIS 112 -10.008 44.632 11.202 1.00 1.00 C ATOM 552 O HIS 112 -10.091 45.617 10.471 1.00 1.00 O ATOM 553 CB HIS 112 -9.474 42.604 9.868 1.00 1.00 C ATOM 554 N LEU 113 -9.468 44.675 12.422 1.00 1.00 N ATOM 555 CA LEU 113 -8.934 45.900 12.981 1.00 1.00 C ATOM 556 C LEU 113 -7.412 45.868 12.954 1.00 1.00 C ATOM 557 O LEU 113 -6.810 44.811 13.127 1.00 1.00 O ATOM 558 CB LEU 113 -9.411 46.050 14.421 1.00 1.00 C ATOM 559 N TRP 114 -6.793 47.030 12.737 1.00 1.00 N ATOM 560 CA TRP 114 -5.349 47.132 12.688 1.00 1.00 C ATOM 561 C TRP 114 -4.921 48.587 12.818 1.00 1.00 C ATOM 562 O TRP 114 -5.746 49.490 12.698 1.00 1.00 O ATOM 563 CB TRP 114 -4.846 46.574 11.361 1.00 1.00 C ATOM 564 N GLY 115 -3.629 48.810 13.067 1.00 1.00 N ATOM 565 CA GLY 115 -3.098 50.150 13.213 1.00 1.00 C ATOM 566 C GLY 115 -3.097 50.862 11.868 1.00 1.00 C ATOM 567 O GLY 115 -3.497 50.288 10.860 1.00 1.00 O ATOM 568 N THR 116 -2.643 52.119 11.859 1.00 1.00 N ATOM 569 CA THR 116 -2.592 52.904 10.642 1.00 1.00 C ATOM 570 C THR 116 -1.197 52.835 10.034 1.00 1.00 C ATOM 571 O THR 116 -0.290 53.534 10.479 1.00 1.00 O ATOM 572 CB THR 116 -2.933 54.356 10.961 1.00 1.00 C ATOM 573 N VAL 117 -1.032 51.990 9.014 1.00 1.00 N ATOM 574 CA VAL 117 0.247 51.833 8.350 1.00 1.00 C ATOM 575 C VAL 117 0.304 52.715 7.111 1.00 1.00 C ATOM 576 O VAL 117 -0.511 52.566 6.204 1.00 1.00 O ATOM 577 CB VAL 117 0.426 50.376 7.940 1.00 1.00 C ATOM 578 N ILE 118 1.271 53.634 7.076 1.00 1.00 N ATOM 579 CA ILE 118 1.431 54.534 5.952 1.00 1.00 C ATOM 580 C ILE 118 2.891 54.588 5.528 1.00 1.00 C ATOM 581 O ILE 118 3.751 54.009 6.187 1.00 1.00 O ATOM 582 CB ILE 118 0.970 55.932 6.354 1.00 1.00 C ATOM 583 N ASP 119 3.167 55.284 4.422 1.00 1.00 N ATOM 584 CA ASP 119 4.518 55.411 3.915 1.00 1.00 C ATOM 585 C ASP 119 5.344 56.295 4.839 1.00 1.00 C ATOM 586 O ASP 119 4.969 57.432 5.112 1.00 1.00 O ATOM 587 CB ASP 119 4.480 56.031 2.522 1.00 1.00 C ATOM 588 N MET 120 6.472 55.767 5.319 1.00 1.00 N ATOM 589 CA MET 120 7.345 56.505 6.208 1.00 1.00 C ATOM 590 C MET 120 7.261 57.994 5.906 1.00 1.00 C ATOM 591 O MET 120 6.884 58.785 6.767 1.00 1.00 O ATOM 592 CB MET 120 8.782 56.030 6.018 1.00 1.00 C ATOM 593 N THR 121 7.617 58.375 4.677 1.00 1.00 N ATOM 594 CA THR 121 7.583 59.764 4.264 1.00 1.00 C ATOM 595 C THR 121 6.141 60.217 4.076 1.00 1.00 C ATOM 596 O THR 121 5.836 61.398 4.229 1.00 1.00 O ATOM 597 CB THR 121 8.336 59.920 2.949 1.00 1.00 C ATOM 598 N GLU 122 5.256 59.274 3.746 1.00 1.00 N ATOM 599 CA GLU 122 3.854 59.578 3.539 1.00 1.00 C ATOM 600 C GLU 122 3.121 59.592 4.872 1.00 1.00 C ATOM 601 O GLU 122 2.295 60.470 5.117 1.00 1.00 O ATOM 602 CB GLU 122 3.236 58.520 2.633 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 231 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.69 51.1 92 100.0 92 ARMSMC SECONDARY STRUCTURE . . 74.80 53.3 60 100.0 60 ARMSMC SURFACE . . . . . . . . 67.49 54.9 82 100.0 82 ARMSMC BURIED . . . . . . . . 112.27 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.12 (Number of atoms: 47) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.12 47 100.0 47 CRMSCA CRN = ALL/NP . . . . . 0.2366 CRMSCA SECONDARY STRUCTURE . . 10.86 30 100.0 30 CRMSCA SURFACE . . . . . . . . 10.88 42 100.0 42 CRMSCA BURIED . . . . . . . . 13.00 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.14 231 100.0 231 CRMSMC SECONDARY STRUCTURE . . 11.00 149 100.0 149 CRMSMC SURFACE . . . . . . . . 10.88 206 100.0 206 CRMSMC BURIED . . . . . . . . 13.07 25 100.0 25 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.28 43 21.4 201 CRMSSC RELIABLE SIDE CHAINS . 11.28 43 25.7 167 CRMSSC SECONDARY STRUCTURE . . 11.48 29 20.3 143 CRMSSC SURFACE . . . . . . . . 11.01 38 21.6 176 CRMSSC BURIED . . . . . . . . 13.18 5 20.0 25 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.14 231 59.4 389 CRMSALL SECONDARY STRUCTURE . . 11.00 149 56.7 263 CRMSALL SURFACE . . . . . . . . 10.88 206 59.9 344 CRMSALL BURIED . . . . . . . . 13.07 25 55.6 45 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.663 0.813 0.407 47 100.0 47 ERRCA SECONDARY STRUCTURE . . 9.511 0.812 0.406 30 100.0 30 ERRCA SURFACE . . . . . . . . 9.408 0.809 0.404 42 100.0 42 ERRCA BURIED . . . . . . . . 11.804 0.851 0.426 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.685 0.814 0.407 231 100.0 231 ERRMC SECONDARY STRUCTURE . . 9.625 0.814 0.407 149 100.0 149 ERRMC SURFACE . . . . . . . . 9.421 0.809 0.405 206 100.0 206 ERRMC BURIED . . . . . . . . 11.860 0.851 0.426 25 100.0 25 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.739 0.810 0.405 43 21.4 201 ERRSC RELIABLE SIDE CHAINS . 9.739 0.810 0.405 43 25.7 167 ERRSC SECONDARY STRUCTURE . . 9.974 0.814 0.407 29 20.3 143 ERRSC SURFACE . . . . . . . . 9.467 0.806 0.403 38 21.6 176 ERRSC BURIED . . . . . . . . 11.809 0.847 0.424 5 20.0 25 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.685 0.814 0.407 231 59.4 389 ERRALL SECONDARY STRUCTURE . . 9.625 0.814 0.407 149 56.7 263 ERRALL SURFACE . . . . . . . . 9.421 0.809 0.405 206 59.9 344 ERRALL BURIED . . . . . . . . 11.860 0.851 0.426 25 55.6 45 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 21 47 47 DISTCA CA (P) 0.00 0.00 0.00 2.13 44.68 47 DISTCA CA (RMS) 0.00 0.00 0.00 3.11 8.12 DISTCA ALL (N) 0 0 1 7 99 231 389 DISTALL ALL (P) 0.00 0.00 0.26 1.80 25.45 389 DISTALL ALL (RMS) 0.00 0.00 2.88 3.92 8.03 DISTALL END of the results output