####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 46 ( 184), selected 46 , name T0600TS328_1-D2 # Molecule2: number of CA atoms 47 ( 389), selected 46 , name T0600-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600TS328_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 46 76 - 121 2.21 2.21 LCS_AVERAGE: 97.87 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 77 - 121 1.62 2.25 LCS_AVERAGE: 94.82 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 81 - 121 0.99 2.43 LCS_AVERAGE: 81.54 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 46 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 76 G 76 4 25 46 0 3 5 7 8 15 19 24 30 31 33 36 39 42 43 46 46 46 46 46 LCS_GDT D 77 D 77 10 45 46 3 9 14 19 26 31 33 35 41 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 78 R 78 13 45 46 4 14 23 31 40 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT P 79 P 79 27 45 46 4 20 34 40 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT F 80 F 80 28 45 46 11 24 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 81 D 81 41 45 46 11 29 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 82 V 82 41 45 46 9 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT E 83 E 83 41 45 46 9 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Y 84 Y 84 41 45 46 9 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 85 R 85 41 45 46 11 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT I 86 I 86 41 45 46 4 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 87 V 87 41 45 46 4 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 88 R 88 41 45 46 5 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT P 89 P 89 41 45 46 5 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 90 D 90 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT G 91 G 91 41 45 46 5 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 92 Q 92 41 45 46 5 21 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 93 V 93 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 94 R 94 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT E 95 E 95 41 45 46 11 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT L 96 L 96 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT L 97 L 97 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT E 98 E 98 41 45 46 11 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 99 R 99 41 45 46 11 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT N 100 N 100 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT H 101 H 101 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT I 102 I 102 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 103 Q 103 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT R 104 R 104 41 45 46 14 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 105 Q 105 41 45 46 10 29 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT A 106 A 106 41 45 46 9 10 35 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT S 107 S 107 41 45 46 9 12 35 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT G 108 G 108 41 45 46 9 10 22 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT Q 109 Q 109 41 45 46 9 12 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 110 V 110 41 45 46 9 27 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 111 D 111 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT H 112 H 112 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT L 113 L 113 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT W 114 W 114 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT G 115 G 115 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT T 116 T 116 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT V 117 V 117 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT I 118 I 118 41 45 46 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT D 119 D 119 41 45 46 12 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT M 120 M 120 41 45 46 11 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_GDT T 121 T 121 41 45 46 11 22 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 LCS_AVERAGE LCS_A: 91.41 ( 81.54 94.82 97.87 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 31 37 42 43 43 44 44 44 45 45 45 45 45 45 46 46 46 46 46 GDT PERCENT_AT 36.17 65.96 78.72 89.36 91.49 91.49 93.62 93.62 93.62 95.74 95.74 95.74 95.74 95.74 95.74 97.87 97.87 97.87 97.87 97.87 GDT RMS_LOCAL 0.35 0.62 0.77 1.03 1.10 1.10 1.26 1.26 1.26 1.62 1.62 1.62 1.62 1.62 1.62 2.21 2.21 2.21 2.21 2.21 GDT RMS_ALL_AT 2.34 2.34 2.35 2.40 2.36 2.36 2.30 2.30 2.30 2.25 2.25 2.25 2.25 2.25 2.25 2.21 2.21 2.21 2.21 2.21 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 76 G 76 11.120 0 0.675 0.675 11.318 4.048 4.048 LGA D 77 D 77 7.109 4 0.444 0.444 8.900 13.929 6.964 LGA R 78 R 78 4.060 7 0.167 0.167 5.162 40.833 14.848 LGA P 79 P 79 2.332 3 0.114 0.114 2.942 66.905 38.231 LGA F 80 F 80 1.643 7 0.062 0.062 1.925 79.405 28.874 LGA D 81 D 81 0.900 4 0.092 0.092 1.167 88.214 44.107 LGA V 82 V 82 1.235 3 0.055 0.055 1.235 83.690 47.823 LGA E 83 E 83 1.344 5 0.049 0.049 2.012 75.119 33.386 LGA Y 84 Y 84 1.578 8 0.039 0.039 1.578 79.286 26.429 LGA R 85 R 85 1.247 7 0.132 0.132 1.443 81.429 29.610 LGA I 86 I 86 1.007 4 0.078 0.078 1.007 88.214 44.107 LGA V 87 V 87 0.854 3 0.044 0.044 1.334 88.214 50.408 LGA R 88 R 88 0.571 7 0.034 0.034 0.571 95.238 34.632 LGA P 89 P 89 0.786 3 0.016 0.016 0.836 90.476 51.701 LGA D 90 D 90 0.573 4 0.108 0.108 1.398 90.595 45.298 LGA G 91 G 91 0.774 0 0.079 0.079 1.323 88.214 88.214 LGA Q 92 Q 92 1.472 5 0.103 0.103 1.472 90.595 40.265 LGA V 93 V 93 0.262 3 0.087 0.087 0.686 95.238 54.422 LGA R 94 R 94 0.707 7 0.056 0.056 1.245 90.595 32.944 LGA E 95 E 95 1.030 5 0.013 0.013 1.030 88.214 39.206 LGA L 96 L 96 0.433 4 0.047 0.047 0.657 97.619 48.810 LGA L 97 L 97 0.292 4 0.031 0.031 0.397 100.000 50.000 LGA E 98 E 98 0.724 5 0.056 0.056 0.774 90.476 40.212 LGA R 99 R 99 0.744 7 0.041 0.041 0.808 90.476 32.900 LGA N 100 N 100 0.424 4 0.028 0.028 0.582 97.619 48.810 LGA H 101 H 101 0.125 6 0.064 0.064 0.302 100.000 40.000 LGA I 102 I 102 0.470 4 0.026 0.026 0.774 95.238 47.619 LGA Q 103 Q 103 0.379 5 0.117 0.117 0.881 97.619 43.386 LGA R 104 R 104 0.281 7 0.024 0.024 0.682 97.619 35.498 LGA Q 105 Q 105 0.605 5 0.042 0.042 1.404 88.333 39.259 LGA A 106 A 106 2.131 1 0.140 0.140 3.055 63.095 50.476 LGA S 107 S 107 2.086 2 0.149 0.149 2.205 66.786 44.524 LGA G 108 G 108 2.272 0 0.108 0.108 2.374 64.762 64.762 LGA Q 109 Q 109 1.812 5 0.036 0.036 1.816 77.143 34.286 LGA V 110 V 110 1.398 3 0.029 0.029 1.630 77.143 44.082 LGA D 111 D 111 1.101 4 0.121 0.121 1.101 85.952 42.976 LGA H 112 H 112 0.688 6 0.027 0.027 0.953 90.476 36.190 LGA L 113 L 113 0.416 4 0.113 0.113 0.501 97.619 48.810 LGA W 114 W 114 0.390 10 0.109 0.109 0.444 100.000 28.571 LGA G 115 G 115 0.421 0 0.036 0.036 0.450 100.000 100.000 LGA T 116 T 116 0.709 3 0.055 0.055 0.709 95.238 54.422 LGA V 117 V 117 0.629 3 0.063 0.063 0.778 90.476 51.701 LGA I 118 I 118 0.523 4 0.052 0.052 0.574 92.857 46.429 LGA D 119 D 119 0.781 4 0.076 0.076 1.245 88.214 44.107 LGA M 120 M 120 0.942 4 0.197 0.197 1.028 88.214 44.107 LGA T 121 T 121 1.724 3 0.141 0.141 2.103 72.976 41.701 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 46 184 184 100.00 380 184 48.42 47 SUMMARY(RMSD_GDC): 2.213 2.067 2.067 81.370 41.684 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 46 47 4.0 44 1.26 86.702 90.661 3.239 LGA_LOCAL RMSD: 1.259 Number of atoms: 44 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.303 Number of assigned atoms: 46 Std_ASGN_ATOMS RMSD: 2.213 Standard rmsd on all 46 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.960975 * X + 0.236537 * Y + 0.143447 * Z + -36.018372 Y_new = -0.260385 * X + 0.598318 * Y + 0.757770 * Z + -19.292723 Z_new = 0.093414 * X + -0.765549 * Y + 0.636560 * Z + -18.560404 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.264606 -0.093550 -0.877137 [DEG: -15.1608 -5.3600 -50.2562 ] ZXZ: 2.954505 0.880767 3.020171 [DEG: 169.2807 50.4642 173.0431 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600TS328_1-D2 REMARK 2: T0600-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600TS328_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 46 47 4.0 44 1.26 90.661 2.21 REMARK ---------------------------------------------------------- MOLECULE T0600TS328_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0600 REMARK MODEL 1 REMARK PARENT 3h9w_A ATOM 237 N GLY 76 10.948 61.132 17.549 1.00 3.00 N ATOM 238 CA GLY 76 10.647 61.823 18.797 1.00 3.00 C ATOM 239 C GLY 76 9.780 60.970 19.717 1.00 3.00 C ATOM 240 O GLY 76 9.427 61.398 20.815 1.00 3.00 O ATOM 241 N ASP 77 9.446 59.764 19.264 1.00 3.00 N ATOM 242 CA ASP 77 8.624 58.866 20.061 1.00 3.00 C ATOM 243 C ASP 77 7.202 59.359 20.255 1.00 3.00 C ATOM 244 O ASP 77 6.528 58.981 21.212 1.00 3.00 O ATOM 245 N ARG 78 6.737 60.199 19.337 1.00 3.00 N ATOM 246 CA ARG 78 5.391 60.755 19.424 1.00 3.00 C ATOM 247 C ARG 78 4.406 60.053 18.485 1.00 3.00 C ATOM 248 O ARG 78 4.638 59.986 17.281 1.00 3.00 O ATOM 249 N PRO 79 3.312 59.529 19.032 1.00 3.00 N ATOM 250 CA PRO 79 2.314 58.858 18.200 1.00 3.00 C ATOM 251 C PRO 79 1.801 59.854 17.191 1.00 3.00 C ATOM 252 O PRO 79 1.707 61.041 17.480 1.00 3.00 O ATOM 253 N PHE 80 1.464 59.376 16.003 1.00 3.00 N ATOM 254 CA PHE 80 0.982 60.276 14.970 1.00 3.00 C ATOM 255 C PHE 80 0.093 59.542 13.986 1.00 3.00 C ATOM 256 O PHE 80 -0.070 58.325 14.063 1.00 3.00 O ATOM 257 N ASP 81 -0.482 60.299 13.058 1.00 3.00 N ATOM 258 CA ASP 81 -1.338 59.730 12.028 1.00 3.00 C ATOM 259 C ASP 81 -1.262 60.646 10.815 1.00 3.00 C ATOM 260 O ASP 81 -1.013 61.840 10.956 1.00 3.00 O ATOM 261 N VAL 82 -1.459 60.080 9.629 1.00 3.00 N ATOM 262 CA VAL 82 -1.412 60.849 8.392 1.00 3.00 C ATOM 263 C VAL 82 -2.404 60.310 7.379 1.00 3.00 C ATOM 264 O VAL 82 -2.646 59.103 7.307 1.00 3.00 O ATOM 265 N GLU 83 -2.988 61.220 6.607 1.00 3.00 N ATOM 266 CA GLU 83 -3.941 60.864 5.567 1.00 3.00 C ATOM 267 C GLU 83 -3.235 61.084 4.239 1.00 3.00 C ATOM 268 O GLU 83 -2.664 62.148 4.006 1.00 3.00 O ATOM 269 N TYR 84 -3.263 60.079 3.373 1.00 3.00 N ATOM 270 CA TYR 84 -2.618 60.208 2.076 1.00 3.00 C ATOM 271 C TYR 84 -3.203 59.250 1.050 1.00 3.00 C ATOM 272 O TYR 84 -3.972 58.333 1.377 1.00 3.00 O ATOM 273 N ARG 85 -2.832 59.483 -0.203 1.00 3.00 N ATOM 274 CA ARG 85 -3.281 58.664 -1.307 1.00 3.00 C ATOM 275 C ARG 85 -2.264 57.556 -1.524 1.00 3.00 C ATOM 276 O ARG 85 -1.116 57.812 -1.904 1.00 3.00 O ATOM 277 N ILE 86 -2.681 56.324 -1.251 1.00 3.00 N ATOM 278 CA ILE 86 -1.814 55.168 -1.426 1.00 3.00 C ATOM 279 C ILE 86 -1.948 54.706 -2.865 1.00 3.00 C ATOM 280 O ILE 86 -3.008 54.843 -3.475 1.00 3.00 O ATOM 281 N VAL 87 -0.871 54.157 -3.400 1.00 3.00 N ATOM 282 CA VAL 87 -0.853 53.685 -4.778 1.00 3.00 C ATOM 283 C VAL 87 -1.253 52.222 -4.884 1.00 3.00 C ATOM 284 O VAL 87 -0.614 51.352 -4.293 1.00 3.00 O ATOM 285 N ARG 88 -2.317 51.957 -5.632 1.00 3.00 N ATOM 286 CA ARG 88 -2.781 50.595 -5.848 1.00 3.00 C ATOM 287 C ARG 88 -1.878 50.023 -6.938 1.00 3.00 C ATOM 288 O ARG 88 -1.347 50.781 -7.756 1.00 3.00 O ATOM 289 N PRO 89 -1.679 48.708 -6.967 1.00 3.00 N ATOM 290 CA PRO 89 -0.811 48.154 -8.003 1.00 3.00 C ATOM 291 C PRO 89 -1.320 48.469 -9.407 1.00 3.00 C ATOM 292 O PRO 89 -0.520 48.631 -10.330 1.00 3.00 O ATOM 293 N ASP 90 -2.638 48.567 -9.580 1.00 3.00 N ATOM 294 CA ASP 90 -3.169 48.858 -10.913 1.00 3.00 C ATOM 295 C ASP 90 -3.011 50.320 -11.334 1.00 3.00 C ATOM 296 O ASP 90 -3.462 50.718 -12.409 1.00 3.00 O ATOM 297 N GLY 91 -2.371 51.119 -10.490 1.00 3.00 N ATOM 298 CA GLY 91 -2.142 52.508 -10.846 1.00 3.00 C ATOM 299 C GLY 91 -3.031 53.574 -10.244 1.00 3.00 C ATOM 300 O GLY 91 -2.630 54.737 -10.208 1.00 3.00 O ATOM 301 N GLN 92 -4.229 53.221 -9.784 1.00 3.00 N ATOM 302 CA GLN 92 -5.085 54.239 -9.196 1.00 3.00 C ATOM 303 C GLN 92 -4.731 54.465 -7.729 1.00 3.00 C ATOM 304 O GLN 92 -4.009 53.670 -7.120 1.00 3.00 O ATOM 305 N VAL 93 -5.237 55.559 -7.171 1.00 3.00 N ATOM 306 CA VAL 93 -4.956 55.926 -5.789 1.00 3.00 C ATOM 307 C VAL 93 -6.102 55.644 -4.830 1.00 3.00 C ATOM 308 O VAL 93 -7.272 55.801 -5.183 1.00 3.00 O ATOM 309 N ARG 94 -5.751 55.229 -3.614 1.00 3.00 N ATOM 310 CA ARG 94 -6.732 54.941 -2.576 1.00 3.00 C ATOM 311 C ARG 94 -6.380 55.761 -1.334 1.00 3.00 C ATOM 312 O ARG 94 -5.253 55.706 -0.842 1.00 3.00 O ATOM 313 N GLU 95 -7.351 56.525 -0.843 1.00 3.00 N ATOM 314 CA GLU 95 -7.160 57.348 0.338 1.00 3.00 C ATOM 315 C GLU 95 -7.047 56.486 1.581 1.00 3.00 C ATOM 316 O GLU 95 -7.961 55.727 1.913 1.00 3.00 O ATOM 317 N LEU 96 -5.927 56.630 2.275 1.00 3.00 N ATOM 318 CA LEU 96 -5.659 55.858 3.475 1.00 3.00 C ATOM 319 C LEU 96 -5.248 56.733 4.654 1.00 3.00 C ATOM 320 O LEU 96 -4.648 57.795 4.485 1.00 3.00 O ATOM 321 N LEU 97 -5.611 56.282 5.849 1.00 3.00 N ATOM 322 CA LEU 97 -5.238 56.956 7.079 1.00 3.00 C ATOM 323 C LEU 97 -4.334 55.951 7.777 1.00 3.00 C ATOM 324 O LEU 97 -4.737 54.819 8.030 1.00 3.00 O ATOM 325 N GLU 98 -3.106 56.363 8.059 1.00 3.00 N ATOM 326 CA GLU 98 -2.148 55.502 8.732 1.00 3.00 C ATOM 327 C GLU 98 -2.051 56.054 10.158 1.00 3.00 C ATOM 328 O GLU 98 -1.790 57.245 10.350 1.00 3.00 O ATOM 329 N ARG 99 -2.300 55.194 11.144 1.00 3.00 N ATOM 330 CA ARG 99 -2.262 55.571 12.556 1.00 3.00 C ATOM 331 C ARG 99 -1.128 54.811 13.202 1.00 3.00 C ATOM 332 O ARG 99 -1.083 53.583 13.140 1.00 3.00 O ATOM 333 N ASN 100 -0.228 55.554 13.838 1.00 3.00 N ATOM 334 CA ASN 100 0.972 54.974 14.418 1.00 3.00 C ATOM 335 C ASN 100 1.219 55.182 15.898 1.00 3.00 C ATOM 336 O ASN 100 1.162 56.304 16.404 1.00 3.00 O ATOM 337 N HIS 101 1.516 54.082 16.580 1.00 3.00 N ATOM 338 CA HIS 101 1.858 54.123 17.990 1.00 3.00 C ATOM 339 C HIS 101 3.344 53.774 18.043 1.00 3.00 C ATOM 340 O HIS 101 3.770 52.804 17.415 1.00 3.00 O ATOM 341 N ILE 102 4.127 54.562 18.775 1.00 3.00 N ATOM 342 CA ILE 102 5.568 54.322 18.893 1.00 3.00 C ATOM 343 C ILE 102 5.873 53.548 20.171 1.00 3.00 C ATOM 344 O ILE 102 5.482 53.962 21.257 1.00 3.00 O ATOM 345 N GLN 103 6.574 52.427 20.026 1.00 3.00 N ATOM 346 CA GLN 103 6.937 51.580 21.160 1.00 3.00 C ATOM 347 C GLN 103 8.410 51.756 21.528 1.00 3.00 C ATOM 348 O GLN 103 9.278 51.741 20.655 1.00 3.00 O ATOM 349 N ARG 104 8.682 51.918 22.820 1.00 3.00 N ATOM 350 CA ARG 104 10.048 52.086 23.312 1.00 3.00 C ATOM 351 C ARG 104 10.473 50.845 24.088 1.00 3.00 C ATOM 352 O ARG 104 9.640 50.183 24.707 1.00 3.00 O ATOM 353 N GLN 105 11.767 50.534 24.050 1.00 3.00 N ATOM 354 CA GLN 105 12.293 49.367 24.753 1.00 3.00 C ATOM 355 C GLN 105 12.588 49.690 26.212 1.00 3.00 C ATOM 356 O GLN 105 12.369 50.814 26.665 1.00 3.00 O ATOM 357 N ALA 106 13.103 48.702 26.938 1.00 3.00 N ATOM 358 CA ALA 106 13.420 48.863 28.355 1.00 3.00 C ATOM 359 C ALA 106 14.382 49.999 28.675 1.00 3.00 C ATOM 360 O ALA 106 14.364 50.528 29.785 1.00 3.00 O ATOM 361 N SER 107 15.224 50.375 27.718 1.00 3.00 N ATOM 362 CA SER 107 16.170 51.460 27.953 1.00 3.00 C ATOM 363 C SER 107 15.593 52.813 27.549 1.00 3.00 C ATOM 364 O SER 107 16.265 53.842 27.640 1.00 3.00 O ATOM 365 N GLY 108 14.341 52.808 27.101 1.00 3.00 N ATOM 366 CA GLY 108 13.693 54.047 26.713 1.00 3.00 C ATOM 367 C GLY 108 13.906 54.481 25.276 1.00 3.00 C ATOM 368 O GLY 108 13.521 55.588 24.902 1.00 3.00 O ATOM 369 N GLN 109 14.513 53.621 24.466 1.00 3.00 N ATOM 370 CA GLN 109 14.754 53.958 23.071 1.00 3.00 C ATOM 371 C GLN 109 13.675 53.385 22.158 1.00 3.00 C ATOM 372 O GLN 109 13.098 52.334 22.445 1.00 3.00 O ATOM 373 N VAL 110 13.399 54.090 21.064 1.00 3.00 N ATOM 374 CA VAL 110 12.395 53.654 20.094 1.00 3.00 C ATOM 375 C VAL 110 12.757 52.258 19.600 1.00 3.00 C ATOM 376 O VAL 110 13.867 52.024 19.123 1.00 3.00 O ATOM 377 N ASP 111 11.811 51.333 19.709 1.00 3.00 N ATOM 378 CA ASP 111 12.045 49.955 19.311 1.00 3.00 C ATOM 379 C ASP 111 11.212 49.509 18.114 1.00 3.00 C ATOM 380 O ASP 111 11.671 48.728 17.281 1.00 3.00 O ATOM 381 N HIS 112 9.985 50.001 18.023 1.00 3.00 N ATOM 382 CA HIS 112 9.137 49.613 16.916 1.00 3.00 C ATOM 383 C HIS 112 7.980 50.564 16.729 1.00 3.00 C ATOM 384 O HIS 112 7.735 51.442 17.556 1.00 3.00 O ATOM 385 N LEU 113 7.281 50.379 15.615 1.00 3.00 N ATOM 386 CA LEU 113 6.111 51.174 15.271 1.00 3.00 C ATOM 387 C LEU 113 4.999 50.159 15.026 1.00 3.00 C ATOM 388 O LEU 113 5.194 49.187 14.300 1.00 3.00 O ATOM 389 N TRP 114 3.841 50.377 15.639 1.00 3.00 N ATOM 390 CA TRP 114 2.711 49.466 15.490 1.00 3.00 C ATOM 391 C TRP 114 1.456 50.282 15.219 1.00 3.00 C ATOM 392 O TRP 114 1.245 51.323 15.836 1.00 3.00 O ATOM 393 N GLY 115 0.612 49.812 14.314 1.00 3.00 N ATOM 394 CA GLY 115 -0.590 50.567 14.045 1.00 3.00 C ATOM 395 C GLY 115 -1.529 49.916 13.066 1.00 3.00 C ATOM 396 O GLY 115 -1.510 48.698 12.875 1.00 3.00 O ATOM 397 N THR 116 -2.351 50.744 12.437 1.00 3.00 N ATOM 398 CA THR 116 -3.325 50.268 11.467 1.00 3.00 C ATOM 399 C THR 116 -3.408 51.223 10.287 1.00 3.00 C ATOM 400 O THR 116 -3.172 52.419 10.430 1.00 3.00 O ATOM 401 N VAL 117 -3.755 50.678 9.128 1.00 3.00 N ATOM 402 CA VAL 117 -3.980 51.477 7.933 1.00 3.00 C ATOM 403 C VAL 117 -5.471 51.313 7.692 1.00 3.00 C ATOM 404 O VAL 117 -6.002 50.206 7.783 1.00 3.00 O ATOM 405 N ILE 118 -6.140 52.421 7.395 1.00 3.00 N ATOM 406 CA ILE 118 -7.580 52.420 7.170 1.00 3.00 C ATOM 407 C ILE 118 -7.930 53.008 5.812 1.00 3.00 C ATOM 408 O ILE 118 -7.360 54.021 5.405 1.00 3.00 O ATOM 409 N ASP 119 -8.880 52.378 5.130 1.00 3.00 N ATOM 410 CA ASP 119 -9.361 52.859 3.839 1.00 3.00 C ATOM 411 C ASP 119 -10.328 53.986 4.198 1.00 3.00 C ATOM 412 O ASP 119 -11.335 53.746 4.868 1.00 3.00 O ATOM 413 N MET 120 -10.017 55.214 3.792 1.00 3.00 N ATOM 414 CA MET 120 -10.911 56.331 4.095 1.00 3.00 C ATOM 415 C MET 120 -11.503 56.928 2.829 1.00 3.00 C ATOM 416 O MET 120 -11.745 58.132 2.740 1.00 3.00 O ATOM 417 N THR 121 -11.742 56.053 1.859 1.00 3.00 N ATOM 418 CA THR 121 -12.328 56.417 0.577 1.00 3.00 C ATOM 419 C THR 121 -13.647 57.161 0.744 1.00 3.00 C ATOM 420 O THR 121 -13.909 58.143 0.050 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 184 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 31.10 86.7 90 97.8 92 ARMSMC SECONDARY STRUCTURE . . 16.68 91.7 60 100.0 60 ARMSMC SURFACE . . . . . . . . 32.68 85.0 80 97.6 82 ARMSMC BURIED . . . . . . . . 12.72 100.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 37 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.21 (Number of atoms: 46) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.21 46 97.9 47 CRMSCA CRN = ALL/NP . . . . . 0.0481 CRMSCA SECONDARY STRUCTURE . . 0.95 30 100.0 30 CRMSCA SURFACE . . . . . . . . 2.33 41 97.6 42 CRMSCA BURIED . . . . . . . . 0.61 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.07 184 79.7 231 CRMSMC SECONDARY STRUCTURE . . 0.95 120 80.5 149 CRMSMC SURFACE . . . . . . . . 2.18 164 79.6 206 CRMSMC BURIED . . . . . . . . 0.66 20 80.0 25 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 201 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 167 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 143 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 176 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 25 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.07 184 47.3 389 CRMSALL SECONDARY STRUCTURE . . 0.95 120 45.6 263 CRMSALL SURFACE . . . . . . . . 2.18 164 47.7 344 CRMSALL BURIED . . . . . . . . 0.66 20 44.4 45 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.956 0.467 0.521 46 97.9 47 ERRCA SECONDARY STRUCTURE . . 2.129 0.564 0.635 30 100.0 30 ERRCA SURFACE . . . . . . . . 1.902 0.443 0.497 41 97.6 42 ERRCA BURIED . . . . . . . . 2.398 0.668 0.716 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.955 0.476 0.527 184 79.7 231 ERRMC SECONDARY STRUCTURE . . 2.139 0.570 0.641 120 80.5 149 ERRMC SURFACE . . . . . . . . 1.902 0.453 0.504 164 79.6 206 ERRMC BURIED . . . . . . . . 2.388 0.668 0.719 20 80.0 25 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 201 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 167 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 143 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 176 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 25 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.955 0.476 0.527 184 47.3 389 ERRALL SECONDARY STRUCTURE . . 2.139 0.570 0.641 120 45.6 263 ERRALL SURFACE . . . . . . . . 1.902 0.453 0.504 164 47.7 344 ERRALL BURIED . . . . . . . . 2.388 0.668 0.719 20 44.4 45 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 22 39 42 44 45 46 47 DISTCA CA (P) 46.81 82.98 89.36 93.62 95.74 47 DISTCA CA (RMS) 0.70 1.06 1.26 1.40 1.66 DISTCA ALL (N) 94 154 167 178 182 184 389 DISTALL ALL (P) 24.16 39.59 42.93 45.76 46.79 389 DISTALL ALL (RMS) 0.71 1.03 1.21 1.47 1.78 DISTALL END of the results output