####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 59 ( 236), selected 59 , name T0600TS328_1-D1 # Molecule2: number of CA atoms 59 ( 484), selected 59 , name T0600-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0600TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 59 17 - 75 2.24 2.24 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 17 - 48 1.98 2.68 LCS_AVERAGE: 49.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 58 - 75 0.88 3.85 LCS_AVERAGE: 23.67 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 59 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 17 G 17 17 32 59 9 24 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT I 18 I 18 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT G 19 G 19 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 20 S 20 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT W 21 W 21 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 22 V 22 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 23 L 23 17 32 59 9 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 24 H 24 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT M 25 M 25 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 26 E 26 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 27 S 27 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT G 28 G 28 17 32 59 11 25 32 40 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 29 R 29 17 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 30 L 30 17 32 59 9 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 31 E 31 17 32 59 3 18 29 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT W 32 W 32 17 32 59 9 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 33 S 33 17 32 59 5 23 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT Q 34 Q 34 4 32 59 3 3 5 36 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 35 A 35 10 32 59 6 23 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 36 V 36 10 32 59 6 10 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 37 H 37 10 32 59 6 8 16 40 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 38 D 38 10 32 59 6 8 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT I 39 I 39 10 32 59 6 8 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT F 40 F 40 10 32 59 6 8 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT G 41 G 41 10 32 59 4 16 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT T 42 T 42 10 32 59 5 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 43 D 43 10 32 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT S 44 S 44 10 32 59 4 7 23 37 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 45 A 45 9 32 59 4 7 9 14 25 41 50 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT T 46 T 46 9 32 59 4 5 9 12 17 25 45 54 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT F 47 F 47 5 32 59 3 4 5 10 16 28 46 54 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 48 D 48 5 32 59 3 6 14 26 39 45 51 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 49 A 49 3 19 59 3 3 6 9 18 36 50 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT T 50 T 50 5 26 59 3 5 8 22 35 45 50 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 51 E 51 5 26 59 3 5 5 26 43 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 52 D 52 5 26 59 4 17 22 33 45 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 53 A 53 5 26 59 3 5 6 17 36 50 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT Y 54 Y 54 13 26 59 5 17 30 39 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT F 55 F 55 13 26 59 10 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT Q 56 Q 56 13 26 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 57 R 57 17 26 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 58 V 58 18 26 59 8 24 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 59 H 59 18 26 59 8 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT P 60 P 60 18 26 59 9 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 61 D 61 18 26 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 62 D 62 18 26 59 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 63 R 63 18 26 59 9 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT A 64 A 64 18 26 59 5 10 28 40 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 65 R 65 18 26 59 10 24 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 66 V 66 18 26 59 10 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 67 R 67 18 26 59 10 17 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 68 R 68 18 26 59 10 17 26 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT E 69 E 69 18 26 59 10 18 29 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 70 L 70 18 26 59 10 23 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT D 71 D 71 18 26 59 10 17 23 38 46 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT R 72 R 72 18 26 59 10 11 22 34 45 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT H 73 H 73 18 26 59 10 17 27 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT V 74 V 74 18 26 59 10 17 26 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_GDT L 75 L 75 18 26 59 3 17 23 38 46 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 LCS_AVERAGE LCS_A: 57.68 ( 23.67 49.38 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 25 32 41 47 52 53 57 59 59 59 59 59 59 59 59 59 59 59 59 GDT PERCENT_AT 18.64 42.37 54.24 69.49 79.66 88.14 89.83 96.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.68 0.87 1.25 1.43 1.66 1.72 2.06 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 GDT RMS_ALL_AT 3.71 2.31 2.28 2.29 2.26 2.31 2.31 2.25 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 17 G 17 0.869 0 0.463 0.463 3.293 80.357 80.357 LGA I 18 I 18 0.507 4 0.105 0.105 0.674 95.238 47.619 LGA G 19 G 19 0.166 0 0.102 0.102 0.707 97.619 97.619 LGA S 20 S 20 0.267 2 0.031 0.031 0.332 100.000 66.667 LGA W 21 W 21 0.565 10 0.052 0.052 0.566 92.857 26.531 LGA V 22 V 22 0.542 3 0.117 0.117 0.597 92.857 53.061 LGA L 23 L 23 0.880 4 0.017 0.017 0.898 90.476 45.238 LGA H 24 H 24 0.923 6 0.060 0.060 1.116 85.952 34.381 LGA M 25 M 25 1.639 4 0.076 0.076 2.100 72.976 36.488 LGA E 26 E 26 1.242 5 0.081 0.081 1.568 79.286 35.238 LGA S 27 S 27 1.114 2 0.045 0.045 1.508 79.286 52.857 LGA G 28 G 28 1.755 0 0.130 0.130 1.755 77.143 77.143 LGA R 29 R 29 1.162 7 0.052 0.052 1.273 85.952 31.255 LGA L 30 L 30 0.983 4 0.101 0.101 1.527 88.452 44.226 LGA E 31 E 31 1.712 5 0.121 0.121 1.712 86.071 38.254 LGA W 32 W 32 0.636 10 0.216 0.216 1.227 88.214 25.204 LGA S 33 S 33 1.404 2 0.102 0.102 2.530 77.619 51.746 LGA Q 34 Q 34 2.563 5 0.322 0.322 3.967 61.667 27.407 LGA A 35 A 35 1.502 1 0.198 0.198 1.659 75.000 60.000 LGA V 36 V 36 2.042 3 0.093 0.093 2.204 66.786 38.163 LGA H 37 H 37 2.441 6 0.026 0.026 2.689 62.857 25.143 LGA D 38 D 38 2.105 4 0.019 0.019 2.228 64.762 32.381 LGA I 39 I 39 2.098 4 0.041 0.041 2.315 64.762 32.381 LGA F 40 F 40 2.059 7 0.102 0.102 2.059 70.833 25.758 LGA G 41 G 41 1.628 0 0.266 0.266 1.939 75.000 75.000 LGA T 42 T 42 1.022 3 0.099 0.099 1.474 83.690 47.823 LGA D 43 D 43 1.136 4 0.123 0.123 2.450 77.381 38.690 LGA S 44 S 44 2.321 2 0.070 0.070 3.784 57.738 38.492 LGA A 45 A 45 4.660 1 0.047 0.047 5.732 30.595 24.476 LGA T 46 T 46 5.163 3 0.128 0.128 5.711 26.310 15.034 LGA F 47 F 47 5.398 7 0.101 0.101 5.398 28.810 10.476 LGA D 48 D 48 3.975 4 0.619 0.619 5.487 34.524 17.262 LGA A 49 A 49 4.618 1 0.198 0.198 4.618 35.833 28.667 LGA T 50 T 50 4.401 3 0.655 0.655 4.401 41.905 23.946 LGA E 51 E 51 3.395 5 0.106 0.106 3.395 53.571 23.810 LGA D 52 D 52 3.326 4 0.093 0.093 3.420 53.690 26.845 LGA A 53 A 53 3.652 1 0.061 0.061 3.652 48.452 38.762 LGA Y 54 Y 54 2.278 8 0.069 0.069 2.278 64.762 21.587 LGA F 55 F 55 1.092 7 0.055 0.055 1.431 85.952 31.255 LGA Q 56 Q 56 1.036 5 0.110 0.110 1.108 83.690 37.196 LGA R 57 R 57 0.515 7 0.372 0.372 1.620 88.452 32.165 LGA V 58 V 58 0.962 3 0.081 0.081 0.972 90.476 51.701 LGA H 59 H 59 0.809 6 0.028 0.028 0.809 90.476 36.190 LGA P 60 P 60 0.864 3 0.032 0.032 0.875 90.476 51.701 LGA D 61 D 61 0.789 4 0.013 0.013 0.789 90.476 45.238 LGA D 62 D 62 0.379 4 0.076 0.076 0.548 97.619 48.810 LGA R 63 R 63 0.504 7 0.094 0.094 1.591 86.190 31.342 LGA A 64 A 64 2.041 1 0.143 0.143 2.712 69.048 55.238 LGA R 65 R 65 0.712 7 0.046 0.046 0.991 92.857 33.766 LGA V 66 V 66 0.346 3 0.050 0.050 0.495 100.000 57.143 LGA R 67 R 67 1.549 7 0.059 0.059 1.902 77.262 28.095 LGA R 68 R 68 2.264 7 0.033 0.033 2.541 64.881 23.593 LGA E 69 E 69 1.619 5 0.053 0.053 1.787 75.000 33.333 LGA L 70 L 70 0.887 4 0.110 0.110 2.171 79.643 39.821 LGA D 71 D 71 2.929 4 0.033 0.033 3.515 53.810 26.905 LGA R 72 R 72 3.481 7 0.022 0.022 3.584 48.333 17.576 LGA H 73 H 73 2.086 6 0.053 0.053 2.362 64.762 25.905 LGA V 74 V 74 2.321 3 0.101 0.101 2.513 62.857 35.918 LGA L 75 L 75 3.043 4 0.069 0.069 4.451 46.905 23.452 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 59 236 236 100.00 484 236 48.76 59 SUMMARY(RMSD_GDC): 2.241 2.248 2.248 72.686 38.684 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 59 59 4.0 57 2.06 77.119 74.418 2.636 LGA_LOCAL RMSD: 2.063 Number of atoms: 57 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.249 Number of assigned atoms: 59 Std_ASGN_ATOMS RMSD: 2.241 Standard rmsd on all 59 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.738853 * X + -0.343250 * Y + -0.579893 * Z + 53.193752 Y_new = -0.662814 * X + -0.525396 * Y + -0.533513 * Z + 141.096649 Z_new = -0.121545 * X + 0.778549 * Y + -0.615702 * Z + 60.624386 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.731202 0.121846 2.239922 [DEG: -41.8948 6.9813 128.3381 ] ZXZ: -0.827030 2.234072 -0.154867 [DEG: -47.3853 128.0029 -8.8732 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0600TS328_1-D1 REMARK 2: T0600-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0600TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 59 59 4.0 57 2.06 74.418 2.24 REMARK ---------------------------------------------------------- MOLECULE T0600TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0600 REMARK MODEL 1 REMARK PARENT 3h9w_A ATOM 1 N GLY 17 11.322 85.452 35.336 1.00 3.00 N ATOM 2 CA GLY 17 10.809 84.586 36.438 1.00 3.00 C ATOM 3 C GLY 17 10.973 83.116 36.070 1.00 3.00 C ATOM 4 O GLY 17 11.240 82.278 36.932 1.00 3.00 O ATOM 5 N ILE 18 10.806 82.806 34.787 1.00 3.00 N ATOM 6 CA ILE 18 10.954 81.433 34.313 1.00 3.00 C ATOM 7 C ILE 18 12.381 80.977 34.582 1.00 3.00 C ATOM 8 O ILE 18 13.322 81.761 34.493 1.00 3.00 O ATOM 9 N GLY 19 12.540 79.706 34.921 1.00 3.00 N ATOM 10 CA GLY 19 13.855 79.164 35.211 1.00 3.00 C ATOM 11 C GLY 19 14.245 78.170 34.138 1.00 3.00 C ATOM 12 O GLY 19 13.664 77.088 34.043 1.00 3.00 O ATOM 13 N SER 20 15.232 78.526 33.305 1.00 3.00 N ATOM 14 CA SER 20 15.683 77.636 32.238 1.00 3.00 C ATOM 15 C SER 20 16.586 76.539 32.788 1.00 3.00 C ATOM 16 O SER 20 17.293 76.746 33.776 1.00 3.00 O ATOM 17 N TRP 21 16.542 75.371 32.159 1.00 3.00 N ATOM 18 CA TRP 21 17.385 74.257 32.577 1.00 3.00 C ATOM 19 C TRP 21 17.532 73.249 31.442 1.00 3.00 C ATOM 20 O TRP 21 16.745 73.243 30.490 1.00 3.00 O ATOM 21 N VAL 22 18.545 72.400 31.561 1.00 3.00 N ATOM 22 CA VAL 22 18.824 71.367 30.580 1.00 3.00 C ATOM 23 C VAL 22 19.466 70.200 31.306 1.00 3.00 C ATOM 24 O VAL 22 20.268 70.397 32.227 1.00 3.00 O ATOM 25 N LEU 23 19.101 68.994 30.891 1.00 3.00 N ATOM 26 CA LEU 23 19.618 67.764 31.481 1.00 3.00 C ATOM 27 C LEU 23 20.241 66.865 30.417 1.00 3.00 C ATOM 28 O LEU 23 19.638 66.617 29.372 1.00 3.00 O ATOM 29 N HIS 24 21.447 66.381 30.689 1.00 3.00 N ATOM 30 CA HIS 24 22.135 65.473 29.775 1.00 3.00 C ATOM 31 C HIS 24 21.490 64.116 30.028 1.00 3.00 C ATOM 32 O HIS 24 21.597 63.572 31.121 1.00 3.00 O ATOM 33 N MET 25 20.806 63.584 29.022 1.00 3.00 N ATOM 34 CA MET 25 20.110 62.314 29.148 1.00 3.00 C ATOM 35 C MET 25 20.996 61.141 29.565 1.00 3.00 C ATOM 36 O MET 25 20.607 60.334 30.410 1.00 3.00 O ATOM 37 N GLU 26 22.185 61.053 28.983 1.00 3.00 N ATOM 38 CA GLU 26 23.102 59.957 29.290 1.00 3.00 C ATOM 39 C GLU 26 23.533 59.912 30.752 1.00 3.00 C ATOM 40 O GLU 26 23.467 58.865 31.391 1.00 3.00 O ATOM 41 N SER 27 23.970 61.049 31.281 1.00 3.00 N ATOM 42 CA SER 27 24.423 61.122 32.667 1.00 3.00 C ATOM 43 C SER 27 23.314 61.552 33.626 1.00 3.00 C ATOM 44 O SER 27 23.440 61.402 34.844 1.00 3.00 O ATOM 45 N GLY 28 22.230 62.083 33.067 1.00 3.00 N ATOM 46 CA GLY 28 21.102 62.565 33.856 1.00 3.00 C ATOM 47 C GLY 28 21.551 63.683 34.789 1.00 3.00 C ATOM 48 O GLY 28 21.017 63.849 35.884 1.00 3.00 O ATOM 49 N ARG 29 22.539 64.450 34.347 1.00 3.00 N ATOM 50 CA ARG 29 23.045 65.555 35.145 1.00 3.00 C ATOM 51 C ARG 29 22.602 66.879 34.531 1.00 3.00 C ATOM 52 O ARG 29 22.369 66.966 33.325 1.00 3.00 O ATOM 53 N LEU 30 22.478 67.906 35.363 1.00 3.00 N ATOM 54 CA LEU 30 22.080 69.225 34.887 1.00 3.00 C ATOM 55 C LEU 30 21.969 70.289 35.973 1.00 3.00 C ATOM 56 O LEU 30 21.958 69.960 37.161 1.00 3.00 O ATOM 57 N GLU 31 21.907 71.550 35.549 1.00 3.00 N ATOM 58 CA GLU 31 21.807 72.663 36.474 1.00 3.00 C ATOM 59 C GLU 31 20.817 73.754 36.041 1.00 3.00 C ATOM 60 O GLU 31 20.392 73.814 34.878 1.00 3.00 O ATOM 61 N TRP 32 20.466 74.632 36.966 1.00 3.00 N ATOM 62 CA TRP 32 19.490 75.667 36.667 1.00 3.00 C ATOM 63 C TRP 32 20.186 76.968 36.874 1.00 3.00 C ATOM 64 O TRP 32 21.195 77.010 37.566 1.00 3.00 O ATOM 65 N SER 33 19.654 78.054 36.300 1.00 3.00 N ATOM 66 CA SER 33 20.351 79.329 36.489 1.00 3.00 C ATOM 67 C SER 33 19.365 80.476 36.436 1.00 3.00 C ATOM 68 O SER 33 18.209 80.300 36.082 1.00 3.00 O ATOM 69 N GLN 34 19.821 81.649 36.842 1.00 3.00 N ATOM 70 CA GLN 34 19.056 82.865 36.792 1.00 3.00 C ATOM 71 C GLN 34 17.771 82.924 37.614 1.00 3.00 C ATOM 72 O GLN 34 16.833 83.600 37.213 1.00 3.00 O ATOM 73 N ALA 35 17.718 82.265 38.767 1.00 3.00 N ATOM 74 CA ALA 35 16.489 82.284 39.555 1.00 3.00 C ATOM 75 C ALA 35 16.015 81.112 40.426 1.00 3.00 C ATOM 76 O ALA 35 15.140 81.277 41.280 1.00 3.00 O ATOM 77 N VAL 36 16.589 79.927 40.207 1.00 3.00 N ATOM 78 CA VAL 36 16.197 78.747 40.981 1.00 3.00 C ATOM 79 C VAL 36 16.568 78.922 42.452 1.00 3.00 C ATOM 80 O VAL 36 15.939 78.337 43.343 1.00 3.00 O ATOM 81 N HIS 37 17.586 79.738 42.707 1.00 3.00 N ATOM 82 CA HIS 37 18.042 79.981 44.071 1.00 3.00 C ATOM 83 C HIS 37 17.088 80.934 44.786 1.00 3.00 C ATOM 84 O HIS 37 16.713 80.710 45.943 1.00 3.00 O ATOM 85 N ASP 38 16.677 81.993 44.099 1.00 3.00 N ATOM 86 CA ASP 38 15.752 82.942 44.703 1.00 3.00 C ATOM 87 C ASP 38 14.417 82.254 44.971 1.00 3.00 C ATOM 88 O ASP 38 13.774 82.505 45.991 1.00 3.00 O ATOM 89 N ILE 39 14.008 81.376 44.055 1.00 3.00 N ATOM 90 CA ILE 39 12.743 80.671 44.193 1.00 3.00 C ATOM 91 C ILE 39 12.757 79.548 45.235 1.00 3.00 C ATOM 92 O ILE 39 11.890 79.497 46.112 1.00 3.00 O ATOM 93 N PHE 40 13.727 78.645 45.140 1.00 3.00 N ATOM 94 CA PHE 40 13.786 77.512 46.071 1.00 3.00 C ATOM 95 C PHE 40 14.864 77.555 47.157 1.00 3.00 C ATOM 96 O PHE 40 14.982 76.620 47.956 1.00 3.00 O ATOM 97 N GLY 41 15.652 78.627 47.179 1.00 3.00 N ATOM 98 CA GLY 41 16.672 78.784 48.201 1.00 3.00 C ATOM 99 C GLY 41 17.971 77.994 48.118 1.00 3.00 C ATOM 100 O GLY 41 19.019 78.492 48.531 1.00 3.00 O ATOM 101 N THR 42 17.929 76.770 47.608 1.00 3.00 N ATOM 102 CA THR 42 19.152 75.979 47.525 1.00 3.00 C ATOM 103 C THR 42 20.147 76.704 46.627 1.00 3.00 C ATOM 104 O THR 42 19.753 77.365 45.671 1.00 3.00 O ATOM 105 N ASP 43 21.452 76.601 46.930 1.00 3.00 N ATOM 106 CA ASP 43 22.445 77.274 46.086 1.00 3.00 C ATOM 107 C ASP 43 22.276 76.788 44.648 1.00 3.00 C ATOM 108 O ASP 43 22.051 75.603 44.415 1.00 3.00 O ATOM 109 N SER 44 22.372 77.701 43.691 1.00 3.00 N ATOM 110 CA SER 44 22.231 77.334 42.292 1.00 3.00 C ATOM 111 C SER 44 23.156 76.173 41.938 1.00 3.00 C ATOM 112 O SER 44 22.760 75.233 41.245 1.00 3.00 O ATOM 113 N ALA 45 24.386 76.227 42.436 1.00 3.00 N ATOM 114 CA ALA 45 25.342 75.173 42.133 1.00 3.00 C ATOM 115 C ALA 45 25.020 73.809 42.722 1.00 3.00 C ATOM 116 O ALA 45 25.665 72.819 42.370 1.00 3.00 O ATOM 117 N THR 46 24.027 73.749 43.609 1.00 3.00 N ATOM 118 CA THR 46 23.639 72.494 44.256 1.00 3.00 C ATOM 119 C THR 46 22.781 71.593 43.369 1.00 3.00 C ATOM 120 O THR 46 22.586 70.414 43.670 1.00 3.00 O ATOM 121 N PHE 47 22.252 72.147 42.287 1.00 3.00 N ATOM 122 CA PHE 47 21.430 71.361 41.376 1.00 3.00 C ATOM 123 C PHE 47 22.349 70.609 40.426 1.00 3.00 C ATOM 124 O PHE 47 22.644 71.079 39.330 1.00 3.00 O ATOM 125 N ASP 48 22.798 69.434 40.865 1.00 3.00 N ATOM 126 CA ASP 48 23.722 68.601 40.096 1.00 3.00 C ATOM 127 C ASP 48 23.085 67.595 39.140 1.00 3.00 C ATOM 128 O ASP 48 23.563 67.419 38.019 1.00 3.00 O ATOM 129 N ALA 49 22.022 66.925 39.575 1.00 3.00 N ATOM 130 CA ALA 49 21.366 65.938 38.721 1.00 3.00 C ATOM 131 C ALA 49 19.878 65.790 39.001 1.00 3.00 C ATOM 132 O ALA 49 19.321 66.432 39.896 1.00 3.00 O ATOM 133 N THR 50 19.251 64.904 38.237 1.00 3.00 N ATOM 134 CA THR 50 17.830 64.630 38.380 1.00 3.00 C ATOM 135 C THR 50 17.313 64.097 39.690 1.00 3.00 C ATOM 136 O THR 50 16.232 64.438 40.141 1.00 3.00 O ATOM 137 N GLU 51 18.115 63.193 40.293 1.00 3.00 N ATOM 138 CA GLU 51 17.712 62.581 41.556 1.00 3.00 C ATOM 139 C GLU 51 17.766 63.506 42.779 1.00 3.00 C ATOM 140 O GLU 51 16.892 63.337 43.668 1.00 3.00 O ATOM 141 N ASP 52 18.658 64.384 42.772 1.00 3.00 N ATOM 142 CA ASP 52 18.770 65.387 43.961 1.00 3.00 C ATOM 143 C ASP 52 17.989 66.657 43.846 1.00 3.00 C ATOM 144 O ASP 52 17.134 66.939 44.662 1.00 3.00 O ATOM 145 N ALA 53 18.275 67.384 42.805 1.00 9.00 N ATOM 146 CA ALA 53 17.580 68.812 42.681 1.00 9.00 C ATOM 147 C ALA 53 16.114 68.600 42.295 1.00 9.00 C ATOM 148 O ALA 53 15.285 69.367 42.833 1.00 9.00 O ATOM 149 N TYR 54 15.784 67.606 41.412 1.00 3.00 N ATOM 150 CA TYR 54 14.392 67.468 41.002 1.00 3.00 C ATOM 151 C TYR 54 13.549 66.482 41.741 1.00 3.00 C ATOM 152 O TYR 54 12.439 66.913 42.319 1.00 3.00 O ATOM 153 N PHE 55 13.982 65.279 41.995 1.00 3.00 N ATOM 154 CA PHE 55 13.200 64.312 42.727 1.00 3.00 C ATOM 155 C PHE 55 13.383 64.228 44.208 1.00 3.00 C ATOM 156 O PHE 55 12.486 63.563 44.896 1.00 3.00 O ATOM 157 N GLN 56 14.365 64.856 44.772 1.00 3.00 N ATOM 158 CA GLN 56 14.580 64.823 46.226 1.00 3.00 C ATOM 159 C GLN 56 13.892 66.077 46.758 1.00 3.00 C ATOM 160 O GLN 56 13.173 66.027 47.752 1.00 3.00 O ATOM 161 N ARG 57 14.111 67.197 46.080 1.00 3.00 N ATOM 162 CA ARG 57 13.543 68.479 46.489 1.00 3.00 C ATOM 163 C ARG 57 12.109 68.627 45.999 1.00 3.00 C ATOM 164 O ARG 57 11.766 69.565 45.275 1.00 3.00 O ATOM 165 N VAL 58 11.265 67.700 46.434 1.00 3.00 N ATOM 166 CA VAL 58 9.877 67.671 46.019 1.00 3.00 C ATOM 167 C VAL 58 9.007 67.111 47.142 1.00 3.00 C ATOM 168 O VAL 58 9.478 66.347 47.984 1.00 3.00 O ATOM 169 N HIS 59 7.739 67.501 47.148 1.00 3.00 N ATOM 170 CA HIS 59 6.783 67.036 48.153 1.00 3.00 C ATOM 171 C HIS 59 6.680 65.510 48.063 1.00 3.00 C ATOM 172 O HIS 59 6.691 64.946 46.967 1.00 3.00 O ATOM 173 N PRO 60 6.584 64.816 49.215 1.00 3.00 N ATOM 174 CA PRO 60 6.486 63.352 49.215 1.00 3.00 C ATOM 175 C PRO 60 5.336 62.749 48.406 1.00 3.00 C ATOM 176 O PRO 60 5.497 61.693 47.798 1.00 3.00 O ATOM 177 N ASP 61 4.183 63.410 48.389 1.00 3.00 N ATOM 178 CA ASP 61 3.046 62.890 47.642 1.00 3.00 C ATOM 179 C ASP 61 3.197 63.135 46.143 1.00 3.00 C ATOM 180 O ASP 61 2.493 62.531 45.332 1.00 3.00 O ATOM 181 N ASP 62 4.111 64.026 45.775 1.00 3.00 N ATOM 182 CA ASP 62 4.340 64.312 44.368 1.00 3.00 C ATOM 183 C ASP 62 5.459 63.427 43.839 1.00 3.00 C ATOM 184 O ASP 62 5.440 63.006 42.677 1.00 3.00 O ATOM 185 N ARG 63 6.432 63.124 44.690 1.00 3.00 N ATOM 186 CA ARG 63 7.529 62.260 44.275 1.00 3.00 C ATOM 187 C ARG 63 6.906 60.931 43.875 1.00 3.00 C ATOM 188 O ARG 63 7.451 60.207 43.055 1.00 3.00 O ATOM 189 N ALA 64 5.747 60.638 44.464 1.00 3.00 N ATOM 190 CA ALA 64 5.010 59.397 44.216 1.00 3.00 C ATOM 191 C ALA 64 4.502 59.206 42.787 1.00 3.00 C ATOM 192 O ALA 64 4.067 58.108 42.427 1.00 3.00 O ATOM 193 N ARG 65 4.558 60.252 41.965 1.00 3.00 N ATOM 194 CA ARG 65 4.064 60.121 40.597 1.00 3.00 C ATOM 195 C ARG 65 4.840 60.905 39.548 1.00 3.00 C ATOM 196 O ARG 65 4.978 60.458 38.411 1.00 3.00 O ATOM 197 N VAL 66 5.343 62.073 39.931 1.00 3.00 N ATOM 198 CA VAL 66 6.076 62.931 39.002 1.00 3.00 C ATOM 199 C VAL 66 7.315 62.274 38.399 1.00 3.00 C ATOM 200 O VAL 66 7.536 62.336 37.190 1.00 3.00 O ATOM 201 N ARG 67 8.126 61.649 39.240 1.00 3.00 N ATOM 202 CA ARG 67 9.332 60.999 38.759 1.00 3.00 C ATOM 203 C ARG 67 9.009 59.928 37.717 1.00 3.00 C ATOM 204 O ARG 67 9.574 59.930 36.622 1.00 3.00 O ATOM 205 N ARG 68 8.089 59.025 38.038 1.00 3.00 N ATOM 206 CA ARG 68 7.725 57.962 37.099 1.00 3.00 C ATOM 207 C ARG 68 7.129 58.506 35.804 1.00 3.00 C ATOM 208 O ARG 68 7.434 58.015 34.717 1.00 3.00 O ATOM 209 N GLU 69 6.272 59.512 35.926 1.00 3.00 N ATOM 210 CA GLU 69 5.651 60.116 34.758 1.00 3.00 C ATOM 211 C GLU 69 6.727 60.723 33.850 1.00 3.00 C ATOM 212 O GLU 69 6.810 60.395 32.668 1.00 3.00 O ATOM 213 N LEU 70 7.574 61.585 34.402 1.00 3.00 N ATOM 214 CA LEU 70 8.608 62.215 33.584 1.00 3.00 C ATOM 215 C LEU 70 9.567 61.218 32.942 1.00 3.00 C ATOM 216 O LEU 70 9.963 61.384 31.789 1.00 3.00 O ATOM 217 N ASP 71 9.939 60.183 33.685 1.00 3.00 N ATOM 218 CA ASP 71 10.829 59.162 33.157 1.00 3.00 C ATOM 219 C ASP 71 10.190 58.472 31.952 1.00 3.00 C ATOM 220 O ASP 71 10.801 58.355 30.889 1.00 3.00 O ATOM 221 N ARG 72 8.953 58.025 32.126 1.00 3.00 N ATOM 222 CA ARG 72 8.225 57.338 31.064 1.00 3.00 C ATOM 223 C ARG 72 8.085 58.194 29.808 1.00 3.00 C ATOM 224 O ARG 72 8.328 57.723 28.699 1.00 3.00 O ATOM 225 N HIS 73 7.689 59.451 29.978 1.00 3.00 N ATOM 226 CA HIS 73 7.520 60.340 28.837 1.00 3.00 C ATOM 227 C HIS 73 8.838 60.663 28.149 1.00 3.00 C ATOM 228 O HIS 73 8.907 60.716 26.918 1.00 3.00 O ATOM 229 N VAL 74 9.882 60.880 28.941 1.00 3.00 N ATOM 230 CA VAL 74 11.199 61.188 28.393 1.00 3.00 C ATOM 231 C VAL 74 11.735 60.022 27.561 1.00 3.00 C ATOM 232 O VAL 74 12.203 60.216 26.439 1.00 3.00 O ATOM 233 N LEU 75 11.660 58.815 28.112 1.00 3.00 N ATOM 234 CA LEU 75 12.138 57.628 27.413 1.00 3.00 C ATOM 235 C LEU 75 11.403 57.442 26.088 1.00 3.00 C ATOM 236 O LEU 75 11.968 56.929 25.125 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 236 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 40.11 77.6 116 100.0 116 ARMSMC SECONDARY STRUCTURE . . 33.48 82.4 68 100.0 68 ARMSMC SURFACE . . . . . . . . 38.99 79.3 92 100.0 92 ARMSMC BURIED . . . . . . . . 44.13 70.8 24 100.0 24 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 45 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 30 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 27 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.24 (Number of atoms: 59) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.24 59 100.0 59 CRMSCA CRN = ALL/NP . . . . . 0.0380 CRMSCA SECONDARY STRUCTURE . . 2.02 34 100.0 34 CRMSCA SURFACE . . . . . . . . 2.27 47 100.0 47 CRMSCA BURIED . . . . . . . . 2.12 12 100.0 12 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.25 236 81.1 291 CRMSMC SECONDARY STRUCTURE . . 1.98 136 80.0 170 CRMSMC SURFACE . . . . . . . . 2.30 188 81.0 232 CRMSMC BURIED . . . . . . . . 2.04 48 81.4 59 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 248 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 210 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 177 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 206 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 42 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.25 236 48.8 484 CRMSALL SECONDARY STRUCTURE . . 1.98 136 43.5 313 CRMSALL SURFACE . . . . . . . . 2.30 188 47.7 394 CRMSALL BURIED . . . . . . . . 2.04 48 53.3 90 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.642 0.382 0.402 59 100.0 59 ERRCA SECONDARY STRUCTURE . . 1.511 0.345 0.364 34 100.0 34 ERRCA SURFACE . . . . . . . . 1.554 0.375 0.387 47 100.0 47 ERRCA BURIED . . . . . . . . 1.988 0.409 0.460 12 100.0 12 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.639 0.379 0.403 236 81.1 291 ERRMC SECONDARY STRUCTURE . . 1.529 0.348 0.372 136 80.0 170 ERRMC SURFACE . . . . . . . . 1.548 0.372 0.387 188 81.0 232 ERRMC BURIED . . . . . . . . 1.994 0.410 0.464 48 81.4 59 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 248 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 210 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 177 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 206 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 42 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.639 0.379 0.403 236 48.8 484 ERRALL SECONDARY STRUCTURE . . 1.529 0.348 0.372 136 43.5 313 ERRALL SURFACE . . . . . . . . 1.548 0.372 0.387 188 47.7 394 ERRALL BURIED . . . . . . . . 1.994 0.410 0.464 48 53.3 90 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 23 35 47 58 59 59 59 DISTCA CA (P) 38.98 59.32 79.66 98.31 100.00 59 DISTCA CA (RMS) 0.72 1.05 1.47 2.15 2.24 DISTCA ALL (N) 85 143 189 231 236 236 484 DISTALL ALL (P) 17.56 29.55 39.05 47.73 48.76 484 DISTALL ALL (RMS) 0.68 1.08 1.50 2.13 2.25 DISTALL END of the results output